Multiple sequence alignment - TraesCS3A01G147000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G147000 chr3A 100.000 6076 0 0 1 6076 128558091 128564166 0.000000e+00 11221.0
1 TraesCS3A01G147000 chr3A 97.732 1543 26 3 1 1534 128549102 128547560 0.000000e+00 2647.0
2 TraesCS3A01G147000 chr1A 97.847 2462 33 6 2109 4554 389825824 389823367 0.000000e+00 4235.0
3 TraesCS3A01G147000 chr1A 90.731 1532 30 21 4602 6076 389823378 389821902 0.000000e+00 1940.0
4 TraesCS3A01G147000 chr1A 94.095 779 25 8 1 774 389826579 389825817 0.000000e+00 1164.0
5 TraesCS3A01G147000 chr1A 83.737 289 19 12 5639 5901 56982849 56983135 1.310000e-61 248.0
6 TraesCS3A01G147000 chr1A 83.045 289 22 12 5639 5901 212577567 212577854 2.830000e-58 237.0
7 TraesCS3A01G147000 chr1D 93.548 1395 56 13 2109 3479 309978964 309977580 0.000000e+00 2047.0
8 TraesCS3A01G147000 chr1D 90.562 943 37 21 3624 4533 309977462 309976539 0.000000e+00 1201.0
9 TraesCS3A01G147000 chr1D 82.984 1240 72 58 4917 6064 309974891 309973699 0.000000e+00 992.0
10 TraesCS3A01G147000 chr1D 88.276 435 35 10 321 742 309979414 309978983 1.950000e-139 507.0
11 TraesCS3A01G147000 chr1D 91.520 342 20 1 770 1102 427936470 427936129 4.290000e-126 462.0
12 TraesCS3A01G147000 chr1D 87.538 329 20 12 4564 4879 309976539 309976219 1.610000e-95 361.0
13 TraesCS3A01G147000 chr1D 81.967 244 16 2 1154 1396 427930715 427930499 1.350000e-41 182.0
14 TraesCS3A01G147000 chr1D 79.110 292 19 19 1 292 309979660 309979411 4.870000e-36 163.0
15 TraesCS3A01G147000 chr1B 91.218 1412 64 31 3507 4878 419982050 419983441 0.000000e+00 1866.0
16 TraesCS3A01G147000 chr1B 83.242 1271 72 51 4875 6076 419983469 419984667 0.000000e+00 1037.0
17 TraesCS3A01G147000 chr1B 89.520 687 56 5 2109 2784 419978729 419979410 0.000000e+00 856.0
18 TraesCS3A01G147000 chr1B 89.252 642 54 4 770 1396 105291872 105292513 0.000000e+00 789.0
19 TraesCS3A01G147000 chr1B 87.788 434 36 10 338 766 419978305 419978726 5.470000e-135 492.0
20 TraesCS3A01G147000 chr1B 85.337 416 43 7 2910 3312 419979446 419979856 1.220000e-111 414.0
21 TraesCS3A01G147000 chr1B 88.626 211 21 1 1636 1843 38933054 38932844 2.810000e-63 254.0
22 TraesCS3A01G147000 chr1B 88.442 199 22 1 3310 3508 419981794 419981991 7.870000e-59 239.0
23 TraesCS3A01G147000 chr1B 81.197 234 33 6 768 991 678895764 678895532 1.740000e-40 178.0
24 TraesCS3A01G147000 chr1B 85.227 88 13 0 1 88 40946206 40946119 2.330000e-14 91.6
25 TraesCS3A01G147000 chr5D 90.634 726 30 5 1399 2112 387627397 387628096 0.000000e+00 929.0
26 TraesCS3A01G147000 chr5D 86.450 369 35 8 1075 1443 524727709 524728062 2.050000e-104 390.0
27 TraesCS3A01G147000 chr5D 92.664 259 10 1 768 1017 524714117 524714375 1.240000e-96 364.0
28 TraesCS3A01G147000 chr5D 86.081 273 10 6 842 1104 387626843 387627097 1.000000e-67 268.0
29 TraesCS3A01G147000 chr5D 90.449 178 5 4 1266 1443 387627168 387627333 2.200000e-54 224.0
30 TraesCS3A01G147000 chr5D 91.275 149 9 2 4061 4205 384741941 384742089 3.710000e-47 200.0
31 TraesCS3A01G147000 chr5D 86.923 130 17 0 1913 2042 10356502 10356631 4.910000e-31 147.0
32 TraesCS3A01G147000 chr5D 98.571 70 0 1 1185 1253 387627113 387627182 8.270000e-24 122.0
33 TraesCS3A01G147000 chr5D 91.667 48 4 0 4240 4287 384742152 384742199 3.930000e-07 67.6
34 TraesCS3A01G147000 chr6A 90.297 639 47 6 769 1396 7716644 7717278 0.000000e+00 822.0
35 TraesCS3A01G147000 chr6A 83.737 289 19 13 5639 5901 214069018 214069304 1.310000e-61 248.0
36 TraesCS3A01G147000 chr7B 88.000 650 50 11 767 1396 744834988 744835629 0.000000e+00 743.0
37 TraesCS3A01G147000 chr7B 87.538 650 53 11 767 1396 744802716 744803357 0.000000e+00 726.0
38 TraesCS3A01G147000 chr7B 89.372 207 13 6 1644 1844 158308778 158308981 1.010000e-62 252.0
39 TraesCS3A01G147000 chr7B 90.556 180 16 1 1934 2113 744803348 744803526 2.830000e-58 237.0
40 TraesCS3A01G147000 chr7B 90.000 180 17 1 1934 2113 744835620 744835798 1.320000e-56 231.0
41 TraesCS3A01G147000 chr7B 80.769 234 34 6 768 991 158307912 158308144 8.100000e-39 172.0
42 TraesCS3A01G147000 chr7B 78.261 230 44 6 764 991 39919406 39919631 6.350000e-30 143.0
43 TraesCS3A01G147000 chr5B 82.597 385 27 21 3921 4287 461609950 461610312 2.750000e-78 303.0
44 TraesCS3A01G147000 chr5B 87.417 151 11 8 4142 4287 461703023 461703170 3.770000e-37 167.0
45 TraesCS3A01G147000 chr4A 85.417 288 14 14 5640 5901 362910403 362910688 2.160000e-69 274.0
46 TraesCS3A01G147000 chr2B 89.151 212 20 1 1636 1844 108199734 108199523 1.680000e-65 261.0
47 TraesCS3A01G147000 chr2B 88.152 211 22 1 1637 1844 711257831 711257621 1.310000e-61 248.0
48 TraesCS3A01G147000 chr2B 88.725 204 20 1 1644 1844 384042506 384042303 4.700000e-61 246.0
49 TraesCS3A01G147000 chr3B 89.216 204 19 1 1644 1844 811736841 811736638 1.010000e-62 252.0
50 TraesCS3A01G147000 chr3B 83.333 306 16 18 5621 5901 511678847 511679142 3.640000e-62 250.0
51 TraesCS3A01G147000 chr3B 88.208 212 22 2 1636 1844 517204516 517204305 3.640000e-62 250.0
52 TraesCS3A01G147000 chr3B 83.737 289 19 11 5639 5901 727664742 727664456 1.310000e-61 248.0
53 TraesCS3A01G147000 chr3B 86.607 224 28 2 1890 2112 77854784 77855006 4.700000e-61 246.0
54 TraesCS3A01G147000 chr3B 82.479 234 30 6 768 991 811737715 811737483 1.730000e-45 195.0
55 TraesCS3A01G147000 chr7D 88.208 212 22 1 1636 1844 31395779 31395568 3.640000e-62 250.0
56 TraesCS3A01G147000 chr2A 83.391 289 20 13 5639 5901 165942552 165942266 6.080000e-60 243.0
57 TraesCS3A01G147000 chr4B 88.119 202 20 1 1841 2042 525168069 525167872 2.830000e-58 237.0
58 TraesCS3A01G147000 chr4B 79.927 274 44 8 1841 2104 635629231 635628959 2.240000e-44 191.0
59 TraesCS3A01G147000 chr4D 80.142 282 45 7 1841 2112 495832508 495832228 3.710000e-47 200.0
60 TraesCS3A01G147000 chr4D 86.207 87 10 2 1848 1933 486397910 486397825 6.480000e-15 93.5
61 TraesCS3A01G147000 chr6B 87.582 153 19 0 1890 2042 711371574 711371422 1.740000e-40 178.0
62 TraesCS3A01G147000 chr2D 88.172 93 3 1 5639 5723 633473431 633473523 3.000000e-18 104.0
63 TraesCS3A01G147000 chr2D 87.805 82 2 1 5639 5712 633467100 633467019 8.390000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G147000 chr3A 128558091 128564166 6075 False 11221.000000 11221 100.000000 1 6076 1 chr3A.!!$F1 6075
1 TraesCS3A01G147000 chr3A 128547560 128549102 1542 True 2647.000000 2647 97.732000 1 1534 1 chr3A.!!$R1 1533
2 TraesCS3A01G147000 chr1A 389821902 389826579 4677 True 2446.333333 4235 94.224333 1 6076 3 chr1A.!!$R1 6075
3 TraesCS3A01G147000 chr1D 309973699 309979660 5961 True 878.500000 2047 87.003000 1 6064 6 chr1D.!!$R3 6063
4 TraesCS3A01G147000 chr1B 419978305 419984667 6362 False 817.333333 1866 87.591167 338 6076 6 chr1B.!!$F2 5738
5 TraesCS3A01G147000 chr1B 105291872 105292513 641 False 789.000000 789 89.252000 770 1396 1 chr1B.!!$F1 626
6 TraesCS3A01G147000 chr5D 387626843 387628096 1253 False 385.750000 929 91.433750 842 2112 4 chr5D.!!$F5 1270
7 TraesCS3A01G147000 chr6A 7716644 7717278 634 False 822.000000 822 90.297000 769 1396 1 chr6A.!!$F1 627
8 TraesCS3A01G147000 chr7B 744834988 744835798 810 False 487.000000 743 89.000000 767 2113 2 chr7B.!!$F4 1346
9 TraesCS3A01G147000 chr7B 744802716 744803526 810 False 481.500000 726 89.047000 767 2113 2 chr7B.!!$F3 1346
10 TraesCS3A01G147000 chr7B 158307912 158308981 1069 False 212.000000 252 85.070500 768 1844 2 chr7B.!!$F2 1076
11 TraesCS3A01G147000 chr3B 811736638 811737715 1077 True 223.500000 252 85.847500 768 1844 2 chr3B.!!$R3 1076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 682 0.242017 GCTTGTGACCATGAAGGCAC 59.758 55.0 1.25 1.25 43.14 5.01 F
1400 1598 0.333312 GTCTCCCTCTGTCTCCCTCA 59.667 60.0 0.00 0.00 0.00 3.86 F
2361 2717 0.321671 TAGGACTGCCACTGTGAAGC 59.678 55.0 9.86 5.71 36.29 3.86 F
3548 5937 1.059098 ACCTGAGATGCAACCTCACA 58.941 50.0 15.55 2.53 35.89 3.58 F
4810 7262 1.315257 AAACACCATCATCGCCTGCC 61.315 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 2699 1.072159 GCTTCACAGTGGCAGTCCT 59.928 57.895 0.0 0.0 0.00 3.85 R
3181 3570 1.760029 TGTGGATGCCGCTGTAATCTA 59.240 47.619 0.0 0.0 34.70 1.98 R
3907 6304 0.317160 ACCGCTTCGAGATGAACACA 59.683 50.000 0.0 0.0 31.87 3.72 R
4820 7272 0.889306 CGGGATTTTTAACCGGCCAA 59.111 50.000 0.0 0.0 43.69 4.52 R
5802 9698 1.153862 GCGTCTCTGGCTCTCTGTG 60.154 63.158 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
664 682 0.242017 GCTTGTGACCATGAAGGCAC 59.758 55.000 1.25 1.25 43.14 5.01
669 687 0.396435 TGACCATGAAGGCACGAAGT 59.604 50.000 0.00 0.00 43.14 3.01
685 703 2.124903 GAAGTTGACGCTGTTTCGAGA 58.875 47.619 0.00 0.00 0.00 4.04
795 813 5.452078 CCAGTTCTTTTGGCTCAATTGTA 57.548 39.130 5.13 0.00 0.00 2.41
1022 1090 4.373116 GACCCGAGCGCAACTCCA 62.373 66.667 11.47 0.00 43.01 3.86
1400 1598 0.333312 GTCTCCCTCTGTCTCCCTCA 59.667 60.000 0.00 0.00 0.00 3.86
1631 1914 8.713971 TGTATGGACAATCTGTAAGGAATGTAT 58.286 33.333 0.00 0.00 30.68 2.29
1708 2045 2.169146 GCAATTTGGGATGCTGCGC 61.169 57.895 0.00 0.00 39.46 6.09
1794 2133 1.278127 ACCACTTTGTCCGATGTAGGG 59.722 52.381 0.00 0.00 0.00 3.53
1799 2138 1.904771 TGTCCGATGTAGGGCAAGG 59.095 57.895 0.00 0.00 43.84 3.61
1891 2234 2.156891 GCAGCTCGTTTTCGTGTTCATA 59.843 45.455 0.00 0.00 44.46 2.15
1900 2243 7.671827 TCGTTTTCGTGTTCATATTAGACATG 58.328 34.615 0.00 0.00 44.46 3.21
1917 2260 6.481954 AGACATGAAACTGACCGAAATAAC 57.518 37.500 0.00 0.00 0.00 1.89
1920 2263 7.545965 AGACATGAAACTGACCGAAATAACTAG 59.454 37.037 0.00 0.00 0.00 2.57
1922 2265 4.933400 TGAAACTGACCGAAATAACTAGGC 59.067 41.667 0.00 0.00 0.00 3.93
1960 2303 3.881688 CTCACTTCAATCTAGGGGCATTG 59.118 47.826 0.00 0.00 0.00 2.82
2006 2349 7.791029 TCATACAACAATCACAGGCTAGAATA 58.209 34.615 0.00 0.00 0.00 1.75
2025 2368 7.736447 AGAATAACAGAAAAGAACTGGACAG 57.264 36.000 0.00 0.00 39.38 3.51
2034 2377 2.787994 AGAACTGGACAGGCAATTCTG 58.212 47.619 4.14 0.00 40.40 3.02
2247 2603 8.866970 AATATTGCTTCAAATTTGTCCCAATT 57.133 26.923 23.81 13.73 0.00 2.32
2343 2699 4.081972 ACAAATGTGTGGCTTTGTTGTGTA 60.082 37.500 0.00 0.00 41.51 2.90
2361 2717 0.321671 TAGGACTGCCACTGTGAAGC 59.678 55.000 9.86 5.71 36.29 3.86
3093 3481 3.031736 ACTACCCTATGCATGTCGTCTT 58.968 45.455 10.16 0.00 0.00 3.01
3159 3548 3.402110 TGCAACTGTACCTGATTCAGTG 58.598 45.455 12.54 6.74 41.37 3.66
3334 5663 4.470664 ACTTGTTGTAATCACCCGGGTATA 59.529 41.667 29.72 18.79 0.00 1.47
3363 5692 2.723124 ATAAAAGTTTGGTGCTGCCG 57.277 45.000 0.00 0.00 41.21 5.69
3548 5937 1.059098 ACCTGAGATGCAACCTCACA 58.941 50.000 15.55 2.53 35.89 3.58
3589 5978 1.701847 ACCCTGCTTCAGACACTTCAT 59.298 47.619 0.00 0.00 32.44 2.57
3599 5988 6.369890 GCTTCAGACACTTCATTCTGTTGATA 59.630 38.462 0.00 0.00 40.25 2.15
3660 6049 1.996191 GACGCTTCAGTCTGTTGATCC 59.004 52.381 0.00 0.00 38.09 3.36
3907 6304 2.003548 GGAGCCCTTCACCCTGGAT 61.004 63.158 0.00 0.00 0.00 3.41
4147 6549 2.044946 GGCAAGATCAGGGCCGTT 60.045 61.111 0.00 0.00 38.04 4.44
4590 7027 2.813226 TTTTCCCACGCCTCCGATGG 62.813 60.000 0.00 0.00 38.29 3.51
4591 7028 4.770362 TCCCACGCCTCCGATGGA 62.770 66.667 0.00 1.79 37.64 3.41
4593 7030 4.873129 CCACGCCTCCGATGGACG 62.873 72.222 0.00 4.06 37.64 4.79
4594 7031 3.822192 CACGCCTCCGATGGACGA 61.822 66.667 13.54 0.00 45.77 4.20
4595 7032 3.518998 ACGCCTCCGATGGACGAG 61.519 66.667 13.54 0.00 45.77 4.18
4610 7047 2.766229 GAGGGAGGGAGGTGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
4770 7212 1.444119 GCCTTCGTTGCCACACTCAA 61.444 55.000 0.00 0.00 0.00 3.02
4779 7221 4.616604 CGTTGCCACACTCAATCATGAAAT 60.617 41.667 0.00 0.00 34.49 2.17
4810 7262 1.315257 AAACACCATCATCGCCTGCC 61.315 55.000 0.00 0.00 0.00 4.85
4822 7274 2.187946 CCTGCCGTAGCTCCCTTG 59.812 66.667 0.00 0.00 40.80 3.61
4911 8666 8.517062 AAACTCCTACTAGTTGATACGTACAT 57.483 34.615 0.00 0.00 39.62 2.29
5438 9282 3.906649 CGCACGCTCGACATGCTC 61.907 66.667 8.64 0.00 34.61 4.26
5439 9283 3.906649 GCACGCTCGACATGCTCG 61.907 66.667 10.28 10.28 44.44 5.03
5758 9653 1.653151 GAAACGGAGACATAGGCCAC 58.347 55.000 5.01 0.00 0.00 5.01
5842 9750 4.801891 CACAAGCATGAGTAACAAGCAAT 58.198 39.130 0.00 0.00 44.34 3.56
5935 9864 0.172352 CTGTCGTCAAGCTCCTCCTC 59.828 60.000 0.00 0.00 0.00 3.71
5936 9865 1.137825 GTCGTCAAGCTCCTCCTCG 59.862 63.158 0.00 0.00 0.00 4.63
5937 9866 2.202676 CGTCAAGCTCCTCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
5938 9867 2.973899 GTCAAGCTCCTCCTCGCA 59.026 61.111 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
664 682 0.850217 TCGAAACAGCGTCAACTTCG 59.150 50.000 0.00 0.00 40.07 3.79
669 687 2.502213 TCTTCTCGAAACAGCGTCAA 57.498 45.000 0.00 0.00 0.00 3.18
685 703 3.271729 CTCATGCTCAGCTGTGATTCTT 58.728 45.455 19.61 0.00 30.18 2.52
795 813 0.996583 TCCCCGGGCAGTAATTCTTT 59.003 50.000 17.73 0.00 0.00 2.52
1022 1090 2.905996 TTTGCGGGCACAGGAGGAT 61.906 57.895 0.00 0.00 0.00 3.24
1400 1598 8.481492 TTTACTGCATCCATCAATCCATATTT 57.519 30.769 0.00 0.00 0.00 1.40
1606 1889 9.561069 AATACATTCCTTACAGATTGTCCATAC 57.439 33.333 0.00 0.00 33.60 2.39
1608 1891 9.125026 GAAATACATTCCTTACAGATTGTCCAT 57.875 33.333 0.00 0.00 33.60 3.41
1609 1892 8.328758 AGAAATACATTCCTTACAGATTGTCCA 58.671 33.333 0.00 0.00 38.94 4.02
1610 1893 8.738645 AGAAATACATTCCTTACAGATTGTCC 57.261 34.615 0.00 0.00 38.94 4.02
1826 2165 1.665137 ACAATAGTTTCCCCCGGAGT 58.335 50.000 0.73 0.00 31.21 3.85
1891 2234 8.665685 GTTATTTCGGTCAGTTTCATGTCTAAT 58.334 33.333 0.00 0.00 0.00 1.73
1900 2243 4.032558 CGCCTAGTTATTTCGGTCAGTTTC 59.967 45.833 0.00 0.00 0.00 2.78
1917 2260 4.442706 AGTGATGAATTGGTAACGCCTAG 58.557 43.478 0.00 0.00 42.51 3.02
1920 2263 3.006940 TGAGTGATGAATTGGTAACGCC 58.993 45.455 0.00 0.00 42.51 5.68
1922 2265 5.408299 TGAAGTGAGTGATGAATTGGTAACG 59.592 40.000 0.00 0.00 42.51 3.18
1960 2303 4.035558 TGAGTTGTCTGTTGAAATGTCTGC 59.964 41.667 0.00 0.00 0.00 4.26
2006 2349 2.952310 GCCTGTCCAGTTCTTTTCTGTT 59.048 45.455 0.00 0.00 0.00 3.16
2247 2603 4.345257 GGGGATACTAGTGCTCTGAATCAA 59.655 45.833 5.39 0.00 0.00 2.57
2343 2699 1.072159 GCTTCACAGTGGCAGTCCT 59.928 57.895 0.00 0.00 0.00 3.85
2361 2717 8.027771 AGAGCTCAAAATTCTTCAGCTAATTTG 58.972 33.333 17.77 0.00 40.58 2.32
3181 3570 1.760029 TGTGGATGCCGCTGTAATCTA 59.240 47.619 0.00 0.00 34.70 1.98
3334 5663 7.491048 CAGCACCAAACTTTTATAAACAGTTGT 59.509 33.333 18.29 13.23 31.00 3.32
3363 5692 3.137533 ACTTCAAGACTTGAGCTCTTGC 58.862 45.455 17.06 1.87 42.99 4.01
3548 5937 7.121759 CAGGGTCAGAATTTGAATAGATTGTGT 59.878 37.037 0.00 0.00 37.61 3.72
3589 5978 7.629157 TGAAGGTGGAACATATATCAACAGAA 58.371 34.615 0.00 0.00 44.52 3.02
3599 5988 8.814931 TGAATTTGAATTGAAGGTGGAACATAT 58.185 29.630 0.00 0.00 44.52 1.78
3907 6304 0.317160 ACCGCTTCGAGATGAACACA 59.683 50.000 0.00 0.00 31.87 3.72
3976 6373 4.196778 TTGGAGTTGGTGCCCGCA 62.197 61.111 0.00 0.00 0.00 5.69
4147 6549 2.961768 TCGATGAGCGACTGCACA 59.038 55.556 0.00 0.00 45.59 4.57
4590 7027 1.755008 CTCACCTCCCTCCCTCGTC 60.755 68.421 0.00 0.00 0.00 4.20
4591 7028 2.360980 CTCACCTCCCTCCCTCGT 59.639 66.667 0.00 0.00 0.00 4.18
4593 7030 2.766229 GCCTCACCTCCCTCCCTC 60.766 72.222 0.00 0.00 0.00 4.30
4594 7031 4.423209 GGCCTCACCTCCCTCCCT 62.423 72.222 0.00 0.00 34.51 4.20
4763 7205 4.333649 CGTGCCTATTTCATGATTGAGTGT 59.666 41.667 0.00 0.00 32.27 3.55
4770 7212 2.158769 TGCCTCGTGCCTATTTCATGAT 60.159 45.455 0.00 0.00 40.16 2.45
4779 7221 1.302192 GGTGTTTGCCTCGTGCCTA 60.302 57.895 0.00 0.00 40.16 3.93
4810 7262 4.530857 CCGGCCAAGGGAGCTACG 62.531 72.222 2.24 0.00 0.00 3.51
4820 7272 0.889306 CGGGATTTTTAACCGGCCAA 59.111 50.000 0.00 0.00 43.69 4.52
5433 9277 1.145598 CCCTGAGCATGTCGAGCAT 59.854 57.895 0.00 0.00 38.60 3.79
5434 9278 1.984026 TCCCTGAGCATGTCGAGCA 60.984 57.895 0.00 0.00 0.00 4.26
5435 9279 1.520342 GTCCCTGAGCATGTCGAGC 60.520 63.158 0.00 0.00 0.00 5.03
5436 9280 1.226802 CGTCCCTGAGCATGTCGAG 60.227 63.158 0.00 0.00 0.00 4.04
5437 9281 2.710902 CCGTCCCTGAGCATGTCGA 61.711 63.158 0.00 0.00 0.00 4.20
5438 9282 2.202797 CCGTCCCTGAGCATGTCG 60.203 66.667 0.00 0.00 0.00 4.35
5439 9283 2.187946 CCCGTCCCTGAGCATGTC 59.812 66.667 0.00 0.00 0.00 3.06
5802 9698 1.153862 GCGTCTCTGGCTCTCTGTG 60.154 63.158 0.00 0.00 0.00 3.66
5842 9750 3.397282 TGGGTTGCATGTATCCATCCATA 59.603 43.478 12.30 0.00 0.00 2.74
5901 9830 2.283966 CAGGAGACCCGTCACCCT 60.284 66.667 7.59 5.54 40.59 4.34
5937 9866 3.190738 TTGGAGGCCGGTCAAGGTG 62.191 63.158 9.71 0.00 0.00 4.00
5938 9867 2.852075 TTGGAGGCCGGTCAAGGT 60.852 61.111 9.71 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.