Multiple sequence alignment - TraesCS3A01G146700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G146700 chr3A 100.000 6971 0 0 1449 8419 128302776 128309746 0.000000e+00 12874.0
1 TraesCS3A01G146700 chr3A 100.000 1145 0 0 1 1145 128301328 128302472 0.000000e+00 2115.0
2 TraesCS3A01G146700 chr3A 83.712 1056 157 11 3938 4982 12489804 12490855 0.000000e+00 983.0
3 TraesCS3A01G146700 chr3A 80.400 250 34 8 482 719 740070262 740070016 8.690000e-40 176.0
4 TraesCS3A01G146700 chr3A 92.000 50 4 0 6801 6850 128308035 128308084 4.220000e-08 71.3
5 TraesCS3A01G146700 chr3A 92.000 50 4 0 6708 6757 128308128 128308177 4.220000e-08 71.3
6 TraesCS3A01G146700 chr3D 95.882 2501 84 10 1449 3937 122590213 122592706 0.000000e+00 4030.0
7 TraesCS3A01G146700 chr3D 92.139 1870 62 24 5966 7813 122592698 122594504 0.000000e+00 2560.0
8 TraesCS3A01G146700 chr3D 97.377 305 7 1 841 1145 122589893 122590196 1.250000e-142 518.0
9 TraesCS3A01G146700 chr3D 96.233 292 11 0 1 292 122582504 122582795 5.910000e-131 479.0
10 TraesCS3A01G146700 chr3D 91.525 236 18 2 7868 8103 122594523 122594756 2.930000e-84 324.0
11 TraesCS3A01G146700 chr3D 90.374 187 15 3 8236 8419 122595812 122595998 8.440000e-60 243.0
12 TraesCS3A01G146700 chr3D 93.798 129 7 1 712 840 122585911 122586038 8.620000e-45 193.0
13 TraesCS3A01G146700 chr3D 79.918 244 36 9 482 714 345069262 345069021 5.230000e-37 167.0
14 TraesCS3A01G146700 chr3D 94.253 87 4 1 3649 3734 122592504 122592590 1.910000e-26 132.0
15 TraesCS3A01G146700 chr3D 94.000 50 3 0 6708 6757 122593496 122593545 9.060000e-10 76.8
16 TraesCS3A01G146700 chr3D 93.750 48 3 0 8113 8160 478085106 478085059 1.170000e-08 73.1
17 TraesCS3A01G146700 chr3D 91.111 45 4 0 8113 8157 498469284 498469328 2.540000e-05 62.1
18 TraesCS3A01G146700 chr3B 96.424 2433 71 9 1478 3897 174247794 174250223 0.000000e+00 3997.0
19 TraesCS3A01G146700 chr3B 93.625 1898 69 12 5966 7835 174250312 174252185 0.000000e+00 2787.0
20 TraesCS3A01G146700 chr3B 82.436 2044 340 15 3937 5969 354370913 354372948 0.000000e+00 1768.0
21 TraesCS3A01G146700 chr3B 94.373 391 20 2 707 1097 174247089 174247477 4.350000e-167 599.0
22 TraesCS3A01G146700 chr3B 91.228 285 24 1 1 284 174243583 174243867 3.690000e-103 387.0
23 TraesCS3A01G146700 chr3B 94.898 196 9 1 7919 8113 174252184 174252379 1.060000e-78 305.0
24 TraesCS3A01G146700 chr3B 82.716 243 39 3 475 714 727786347 727786105 6.620000e-51 213.0
25 TraesCS3A01G146700 chr3B 87.166 187 15 4 288 465 174246562 174246748 3.980000e-48 204.0
26 TraesCS3A01G146700 chr3B 96.386 83 2 1 3649 3730 174250061 174250143 1.470000e-27 135.0
27 TraesCS3A01G146700 chr3B 100.000 29 0 0 434 462 95579266 95579294 4.000000e-03 54.7
28 TraesCS3A01G146700 chr7A 92.009 1877 73 20 5966 7813 594698334 594700162 0.000000e+00 2564.0
29 TraesCS3A01G146700 chr7A 95.385 1105 28 9 2586 3682 594675823 594676912 0.000000e+00 1736.0
30 TraesCS3A01G146700 chr7A 96.128 1059 40 1 1532 2589 594667807 594668865 0.000000e+00 1727.0
31 TraesCS3A01G146700 chr7A 90.107 374 12 13 750 1123 594667152 594667500 5.950000e-126 462.0
32 TraesCS3A01G146700 chr7A 94.776 268 13 1 3671 3937 594698075 594698342 4.700000e-112 416.0
33 TraesCS3A01G146700 chr7A 92.818 181 11 2 7934 8113 594701599 594701778 2.330000e-65 261.0
34 TraesCS3A01G146700 chr7A 91.935 186 13 2 8236 8419 594701784 594701969 8.380000e-65 259.0
35 TraesCS3A01G146700 chr7A 94.118 85 4 1 3651 3734 594698142 594698226 2.470000e-25 128.0
36 TraesCS3A01G146700 chr7A 93.333 45 3 0 418 462 713736540 713736584 5.450000e-07 67.6
37 TraesCS3A01G146700 chr2D 92.862 1639 103 5 4335 5969 72570138 72571766 0.000000e+00 2366.0
38 TraesCS3A01G146700 chr2D 92.843 517 34 3 3940 4455 618565473 618565987 0.000000e+00 747.0
39 TraesCS3A01G146700 chr2D 93.596 406 25 1 3930 4335 72489735 72490139 9.350000e-169 604.0
40 TraesCS3A01G146700 chr2D 83.154 279 37 8 3937 4206 646254889 646255166 6.530000e-61 246.0
41 TraesCS3A01G146700 chr6D 88.188 1490 163 10 3938 5419 160568531 160570015 0.000000e+00 1764.0
42 TraesCS3A01G146700 chr6D 86.799 553 73 0 5417 5969 160639085 160639637 1.200000e-172 617.0
43 TraesCS3A01G146700 chr6D 92.369 249 18 1 124 371 12542480 12542232 3.740000e-93 353.0
44 TraesCS3A01G146700 chr4D 88.985 1389 150 3 4583 5970 2839008 2837622 0.000000e+00 1714.0
45 TraesCS3A01G146700 chr4D 86.094 640 87 2 3939 4577 2850497 2849859 0.000000e+00 688.0
46 TraesCS3A01G146700 chr4D 94.915 59 3 0 8113 8171 241032889 241032947 9.000000e-15 93.5
47 TraesCS3A01G146700 chr4B 88.307 1394 154 7 4579 5970 2364580 2363194 0.000000e+00 1663.0
48 TraesCS3A01G146700 chrUn 81.491 2053 342 22 3939 5969 245792 247828 0.000000e+00 1652.0
49 TraesCS3A01G146700 chrUn 92.400 250 16 2 124 371 111229769 111229521 3.740000e-93 353.0
50 TraesCS3A01G146700 chr5A 81.036 1988 353 18 3997 5969 68809903 68807925 0.000000e+00 1561.0
51 TraesCS3A01G146700 chr5A 83.262 233 26 7 482 712 622821144 622821365 1.430000e-47 202.0
52 TraesCS3A01G146700 chr7D 80.625 2049 343 30 3939 5969 439727915 439725903 0.000000e+00 1535.0
53 TraesCS3A01G146700 chr5D 80.391 2045 365 26 3939 5969 10757082 10755060 0.000000e+00 1522.0
54 TraesCS3A01G146700 chr5D 93.952 248 14 1 124 371 377316231 377315985 2.870000e-99 374.0
55 TraesCS3A01G146700 chr5D 93.574 249 15 1 124 371 369701250 369701002 3.710000e-98 370.0
56 TraesCS3A01G146700 chr5D 92.369 249 18 1 124 371 488175374 488175622 3.740000e-93 353.0
57 TraesCS3A01G146700 chr5D 89.450 218 20 3 499 713 364665121 364664904 1.080000e-68 272.0
58 TraesCS3A01G146700 chr5D 92.466 146 8 3 3933 4075 410424013 410424158 1.110000e-48 206.0
59 TraesCS3A01G146700 chr5D 93.333 60 3 1 8178 8237 503312277 503312335 4.190000e-13 87.9
60 TraesCS3A01G146700 chr1D 79.706 1498 279 22 3929 5411 203321340 203322827 0.000000e+00 1059.0
61 TraesCS3A01G146700 chr1D 81.948 421 74 2 5550 5969 203340113 203340532 1.040000e-93 355.0
62 TraesCS3A01G146700 chr1D 80.498 241 32 8 487 715 28485237 28485474 4.040000e-38 171.0
63 TraesCS3A01G146700 chr4A 93.173 249 16 1 124 371 669440002 669440250 1.730000e-96 364.0
64 TraesCS3A01G146700 chr2A 91.968 249 19 1 124 371 374735947 374736195 1.740000e-91 348.0
65 TraesCS3A01G146700 chr5B 83.182 220 24 5 499 706 384739894 384739676 1.120000e-43 189.0
66 TraesCS3A01G146700 chr5B 97.436 39 1 0 668 706 676305039 676305077 5.450000e-07 67.6
67 TraesCS3A01G146700 chr6A 91.935 62 5 0 8113 8174 375850404 375850343 4.190000e-13 87.9
68 TraesCS3A01G146700 chr6A 88.889 54 6 0 418 471 556102787 556102734 5.450000e-07 67.6
69 TraesCS3A01G146700 chr6B 95.556 45 2 0 8113 8157 388337554 388337598 1.170000e-08 73.1
70 TraesCS3A01G146700 chr6B 95.238 42 2 0 8113 8154 409328863 409328904 5.450000e-07 67.6
71 TraesCS3A01G146700 chr1B 93.750 48 3 0 8113 8160 683715315 683715268 1.170000e-08 73.1
72 TraesCS3A01G146700 chr1B 100.000 34 0 0 438 471 368995650 368995617 7.050000e-06 63.9
73 TraesCS3A01G146700 chr1A 95.556 45 2 0 8113 8157 94696719 94696763 1.170000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G146700 chr3A 128301328 128309746 8418 False 3782.900000 12874 96.000000 1 8419 4 chr3A.!!$F2 8418
1 TraesCS3A01G146700 chr3A 12489804 12490855 1051 False 983.000000 983 83.712000 3938 4982 1 chr3A.!!$F1 1044
2 TraesCS3A01G146700 chr3D 122582504 122595998 13494 False 950.644444 4030 93.953444 1 8419 9 chr3D.!!$F2 8418
3 TraesCS3A01G146700 chr3B 354370913 354372948 2035 False 1768.000000 1768 82.436000 3937 5969 1 chr3B.!!$F2 2032
4 TraesCS3A01G146700 chr3B 174243583 174252379 8796 False 1202.000000 3997 93.442857 1 8113 7 chr3B.!!$F3 8112
5 TraesCS3A01G146700 chr7A 594675823 594676912 1089 False 1736.000000 1736 95.385000 2586 3682 1 chr7A.!!$F1 1096
6 TraesCS3A01G146700 chr7A 594667152 594668865 1713 False 1094.500000 1727 93.117500 750 2589 2 chr7A.!!$F3 1839
7 TraesCS3A01G146700 chr7A 594698075 594701969 3894 False 725.600000 2564 93.131200 3651 8419 5 chr7A.!!$F4 4768
8 TraesCS3A01G146700 chr2D 72570138 72571766 1628 False 2366.000000 2366 92.862000 4335 5969 1 chr2D.!!$F2 1634
9 TraesCS3A01G146700 chr2D 618565473 618565987 514 False 747.000000 747 92.843000 3940 4455 1 chr2D.!!$F3 515
10 TraesCS3A01G146700 chr6D 160568531 160570015 1484 False 1764.000000 1764 88.188000 3938 5419 1 chr6D.!!$F1 1481
11 TraesCS3A01G146700 chr6D 160639085 160639637 552 False 617.000000 617 86.799000 5417 5969 1 chr6D.!!$F2 552
12 TraesCS3A01G146700 chr4D 2837622 2839008 1386 True 1714.000000 1714 88.985000 4583 5970 1 chr4D.!!$R1 1387
13 TraesCS3A01G146700 chr4D 2849859 2850497 638 True 688.000000 688 86.094000 3939 4577 1 chr4D.!!$R2 638
14 TraesCS3A01G146700 chr4B 2363194 2364580 1386 True 1663.000000 1663 88.307000 4579 5970 1 chr4B.!!$R1 1391
15 TraesCS3A01G146700 chrUn 245792 247828 2036 False 1652.000000 1652 81.491000 3939 5969 1 chrUn.!!$F1 2030
16 TraesCS3A01G146700 chr5A 68807925 68809903 1978 True 1561.000000 1561 81.036000 3997 5969 1 chr5A.!!$R1 1972
17 TraesCS3A01G146700 chr7D 439725903 439727915 2012 True 1535.000000 1535 80.625000 3939 5969 1 chr7D.!!$R1 2030
18 TraesCS3A01G146700 chr5D 10755060 10757082 2022 True 1522.000000 1522 80.391000 3939 5969 1 chr5D.!!$R1 2030
19 TraesCS3A01G146700 chr1D 203321340 203322827 1487 False 1059.000000 1059 79.706000 3929 5411 1 chr1D.!!$F2 1482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 3431 0.041238 TAGCAGGCAGACTAGTGGGT 59.959 55.0 0.00 0.00 0.00 4.51 F
2195 8969 0.112218 TGTGTGAGGTGGGGAATTGG 59.888 55.0 0.00 0.00 0.00 3.16 F
2291 9065 0.768221 AAGGAGCTGTGGACAGGGAA 60.768 55.0 8.82 0.00 43.94 3.97 F
4251 11107 0.250901 TGTCTCTCCTGCCAAAAGGC 60.251 55.0 0.00 0.00 37.24 4.35 F
4480 11338 0.532417 CTCTGCAGCTGGGCATAGAC 60.532 60.0 17.12 0.00 43.97 2.59 F
5204 12066 0.321564 CCACTTCCCATGCGACAAGA 60.322 55.0 0.00 0.00 0.00 3.02 F
5505 12386 0.390492 TGTGACCTGACACTGCAGAG 59.610 55.0 23.35 16.23 40.87 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 8978 1.147824 CTCGCCATCTCTGCCCATT 59.852 57.895 0.00 0.00 0.00 3.16 R
4165 11020 1.069924 CTTCAGAGCACGCTCGACAG 61.070 60.000 13.12 6.69 46.90 3.51 R
4261 11117 1.760192 ATGCCAGGAATGCTCAAGTC 58.240 50.000 0.00 0.00 0.00 3.01 R
5097 11959 0.033781 TGCAAGTTCATGGCAAAGGC 59.966 50.000 0.00 0.00 34.05 4.35 R
5488 12363 1.368950 GCTCTGCAGTGTCAGGTCA 59.631 57.895 14.67 0.00 34.91 4.02 R
6324 13231 2.487762 CAAGGAAAATGAGCGCCACTTA 59.512 45.455 2.29 0.00 0.00 2.24 R
7490 14401 1.692121 CCTTCCCTGGAGCTCAGAGAT 60.692 57.143 17.19 0.00 46.18 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 199 3.909732 TGAAAGGGAGTTTGTTCCACAT 58.090 40.909 0.00 0.00 39.09 3.21
228 230 2.106511 AGAGCTCAAAACAGGGTAGCAA 59.893 45.455 17.77 0.00 35.63 3.91
248 250 6.507023 AGCAAATTGTATGGCAAACTATAGC 58.493 36.000 0.00 0.00 40.91 2.97
286 288 0.391661 ACGGTGTGGATGTGCAGATC 60.392 55.000 15.28 15.28 0.00 2.75
315 3034 4.098914 TGTTGTGAGGACTTATTGCCTT 57.901 40.909 0.00 0.00 33.84 4.35
318 3037 4.365514 TGTGAGGACTTATTGCCTTTCA 57.634 40.909 0.00 0.00 33.84 2.69
320 3039 4.518970 TGTGAGGACTTATTGCCTTTCAAC 59.481 41.667 0.00 0.00 37.53 3.18
325 3044 5.705905 AGGACTTATTGCCTTTCAACTGTAC 59.294 40.000 0.00 0.00 37.53 2.90
328 3047 3.525800 ATTGCCTTTCAACTGTACCCT 57.474 42.857 0.00 0.00 37.53 4.34
329 3048 2.270352 TGCCTTTCAACTGTACCCTG 57.730 50.000 0.00 0.00 0.00 4.45
330 3049 1.493022 TGCCTTTCAACTGTACCCTGT 59.507 47.619 0.00 0.00 0.00 4.00
331 3050 1.880027 GCCTTTCAACTGTACCCTGTG 59.120 52.381 0.00 0.00 0.00 3.66
344 3064 5.556915 TGTACCCTGTGAGTTTGGAATAAG 58.443 41.667 0.00 0.00 0.00 1.73
493 3242 3.213264 CCATGGGCAAGGCATGAC 58.787 61.111 2.85 0.00 35.73 3.06
494 3243 1.683025 CCATGGGCAAGGCATGACA 60.683 57.895 2.85 0.00 39.66 3.58
495 3244 1.672854 CCATGGGCAAGGCATGACAG 61.673 60.000 2.85 0.00 39.66 3.51
496 3245 1.380785 ATGGGCAAGGCATGACAGG 60.381 57.895 0.00 0.00 39.66 4.00
497 3246 1.866483 ATGGGCAAGGCATGACAGGA 61.866 55.000 0.00 0.00 39.66 3.86
498 3247 1.751927 GGGCAAGGCATGACAGGAG 60.752 63.158 0.00 0.00 39.66 3.69
499 3248 2.413142 GGCAAGGCATGACAGGAGC 61.413 63.158 0.00 0.00 36.87 4.70
500 3249 1.378250 GCAAGGCATGACAGGAGCT 60.378 57.895 0.00 0.00 0.00 4.09
501 3250 0.107508 GCAAGGCATGACAGGAGCTA 60.108 55.000 0.00 0.00 0.00 3.32
502 3251 1.679944 GCAAGGCATGACAGGAGCTAA 60.680 52.381 0.00 0.00 0.00 3.09
503 3252 2.715046 CAAGGCATGACAGGAGCTAAA 58.285 47.619 0.00 0.00 0.00 1.85
504 3253 3.285484 CAAGGCATGACAGGAGCTAAAT 58.715 45.455 0.00 0.00 0.00 1.40
505 3254 2.928334 AGGCATGACAGGAGCTAAATG 58.072 47.619 0.00 0.00 0.00 2.32
506 3255 1.952296 GGCATGACAGGAGCTAAATGG 59.048 52.381 0.00 0.00 0.00 3.16
507 3256 1.952296 GCATGACAGGAGCTAAATGGG 59.048 52.381 0.00 0.00 0.00 4.00
508 3257 1.952296 CATGACAGGAGCTAAATGGGC 59.048 52.381 0.00 0.00 0.00 5.36
509 3258 0.255890 TGACAGGAGCTAAATGGGCC 59.744 55.000 0.00 0.00 0.00 5.80
510 3259 0.255890 GACAGGAGCTAAATGGGCCA 59.744 55.000 9.61 9.61 0.00 5.36
511 3260 0.257039 ACAGGAGCTAAATGGGCCAG 59.743 55.000 13.78 0.00 0.00 4.85
512 3261 0.466922 CAGGAGCTAAATGGGCCAGG 60.467 60.000 13.78 3.22 0.00 4.45
513 3262 1.829970 GGAGCTAAATGGGCCAGGC 60.830 63.158 13.78 13.46 0.00 4.85
547 3303 4.064768 CCTGGGCCATGCTTGGGA 62.065 66.667 19.47 0.00 43.84 4.37
589 3345 0.533308 AGCACGACACGGCCTTTTTA 60.533 50.000 0.00 0.00 0.00 1.52
674 3431 0.041238 TAGCAGGCAGACTAGTGGGT 59.959 55.000 0.00 0.00 0.00 4.51
748 3668 2.492881 TGGCCAGCTATGTTCACAAATG 59.507 45.455 0.00 0.00 0.00 2.32
898 7672 6.127338 CCAAAATTTTAGAATCCCTCTCCACC 60.127 42.308 2.44 0.00 35.41 4.61
970 7744 1.347062 GCTCCAACCAAATTCCCCAA 58.653 50.000 0.00 0.00 0.00 4.12
977 7751 0.617535 CCAAATTCCCCAACCCTCCC 60.618 60.000 0.00 0.00 0.00 4.30
1117 7891 1.621377 GCCTCCTCCTCCTCCTACA 59.379 63.158 0.00 0.00 0.00 2.74
1572 8346 1.789576 GCTTTCCTTCCACCTCCCCA 61.790 60.000 0.00 0.00 0.00 4.96
1805 8579 1.818363 GGAATTCGGGGAGAACGCC 60.818 63.158 0.00 0.00 42.39 5.68
1859 8633 2.266055 GTGAGGGACCGGCTTCAG 59.734 66.667 0.00 0.00 0.00 3.02
2147 8921 3.702048 TCGCAGGTGGGTAGCCAC 61.702 66.667 31.76 31.76 39.72 5.01
2195 8969 0.112218 TGTGTGAGGTGGGGAATTGG 59.888 55.000 0.00 0.00 0.00 3.16
2204 8978 1.005450 GTGGGGAATTGGGAGCAGTTA 59.995 52.381 0.00 0.00 0.00 2.24
2227 9001 2.467826 GCAGAGATGGCGAGGTTGC 61.468 63.158 0.00 0.00 0.00 4.17
2291 9065 0.768221 AAGGAGCTGTGGACAGGGAA 60.768 55.000 8.82 0.00 43.94 3.97
2312 9086 2.879103 TTTTCCCTCATCGGCTTCTT 57.121 45.000 0.00 0.00 0.00 2.52
2327 9101 2.620585 GCTTCTTGAGTTGGTTCTTGCT 59.379 45.455 0.00 0.00 0.00 3.91
2388 9162 3.758554 GCAGCTCATTCTGGTTTTCCTTA 59.241 43.478 0.00 0.00 41.38 2.69
2473 9248 4.496673 CCTTCTCGTACCTTTCTCGATGAG 60.497 50.000 0.00 0.00 33.26 2.90
2476 9251 2.097629 TCGTACCTTTCTCGATGAGCTG 59.902 50.000 0.00 0.00 0.00 4.24
2823 9598 0.885879 TCATACAGGCGAGACACGTT 59.114 50.000 0.00 0.00 44.60 3.99
2873 9648 4.817318 ACTTCAATTCTCAGAGGAGGAC 57.183 45.455 0.00 0.00 41.69 3.85
3192 9970 5.250235 AGATGATGCTTCTGATGCAAAAG 57.750 39.130 20.10 0.00 44.01 2.27
3345 10123 8.208575 AGAGTATCCTTTTTAGTCCTCAGTTT 57.791 34.615 0.00 0.00 33.66 2.66
3373 10151 4.865905 TCTTCCAGCCCTGCAATTATTTA 58.134 39.130 0.00 0.00 0.00 1.40
3374 10152 4.889409 TCTTCCAGCCCTGCAATTATTTAG 59.111 41.667 0.00 0.00 0.00 1.85
3376 10154 4.207165 TCCAGCCCTGCAATTATTTAGTC 58.793 43.478 0.00 0.00 0.00 2.59
3377 10155 3.319122 CCAGCCCTGCAATTATTTAGTCC 59.681 47.826 0.00 0.00 0.00 3.85
3378 10156 4.210331 CAGCCCTGCAATTATTTAGTCCT 58.790 43.478 0.00 0.00 0.00 3.85
3379 10157 4.276926 CAGCCCTGCAATTATTTAGTCCTC 59.723 45.833 0.00 0.00 0.00 3.71
3380 10158 4.079787 AGCCCTGCAATTATTTAGTCCTCA 60.080 41.667 0.00 0.00 0.00 3.86
3381 10159 4.276926 GCCCTGCAATTATTTAGTCCTCAG 59.723 45.833 0.00 0.00 0.00 3.35
3382 10160 5.440610 CCCTGCAATTATTTAGTCCTCAGT 58.559 41.667 0.00 0.00 0.00 3.41
3383 10161 5.297776 CCCTGCAATTATTTAGTCCTCAGTG 59.702 44.000 0.00 0.00 0.00 3.66
3512 10300 0.961753 CCAAACTTGGCCCAGACTTC 59.038 55.000 11.55 0.00 42.21 3.01
3611 10399 6.481644 GGGATTCATTTCAGTCTGACAGTATC 59.518 42.308 10.88 4.63 0.00 2.24
3678 10466 8.220434 GTGTTTTGAATGCATTGTAACCATTAC 58.780 33.333 18.59 9.26 36.67 1.89
3754 10543 5.781210 TGGTCTGTGTTTTGAATGCATTA 57.219 34.783 12.97 0.00 0.00 1.90
3809 10598 2.551459 AGCTCTGTTGATGCTTGTGAAC 59.449 45.455 0.00 0.00 32.61 3.18
3854 10643 7.871463 AGTAGTTTTGTAAGGTACAGTGATGAC 59.129 37.037 0.00 0.00 40.24 3.06
3928 10774 7.655732 AGAAAATTGTAAAAGCAACATACCCAC 59.344 33.333 0.00 0.00 0.00 4.61
3929 10775 6.412362 AATTGTAAAAGCAACATACCCACA 57.588 33.333 0.00 0.00 0.00 4.17
3930 10776 5.854010 TTGTAAAAGCAACATACCCACAA 57.146 34.783 0.00 0.00 0.00 3.33
3931 10777 5.854010 TGTAAAAGCAACATACCCACAAA 57.146 34.783 0.00 0.00 0.00 2.83
3932 10778 6.412362 TGTAAAAGCAACATACCCACAAAT 57.588 33.333 0.00 0.00 0.00 2.32
3933 10779 6.821388 TGTAAAAGCAACATACCCACAAATT 58.179 32.000 0.00 0.00 0.00 1.82
3934 10780 6.703607 TGTAAAAGCAACATACCCACAAATTG 59.296 34.615 0.00 0.00 0.00 2.32
3935 10781 5.543507 AAAGCAACATACCCACAAATTGA 57.456 34.783 0.00 0.00 0.00 2.57
3936 10782 5.743636 AAGCAACATACCCACAAATTGAT 57.256 34.783 0.00 0.00 0.00 2.57
4039 10887 2.415168 ACATGAAGGTGATGTTAACGCG 59.585 45.455 3.53 3.53 29.39 6.01
4127 10982 2.691409 AGCCAACGCTATTCTTGCTA 57.309 45.000 0.00 0.00 46.08 3.49
4158 11013 1.467920 AAAGCATCTGCCCAAGCTAC 58.532 50.000 0.00 0.00 43.38 3.58
4165 11020 1.168714 CTGCCCAAGCTACAAGGTTC 58.831 55.000 0.00 0.00 40.80 3.62
4174 11030 1.618861 CTACAAGGTTCTGTCGAGCG 58.381 55.000 0.00 0.00 0.00 5.03
4251 11107 0.250901 TGTCTCTCCTGCCAAAAGGC 60.251 55.000 0.00 0.00 37.24 4.35
4261 11117 1.619827 TGCCAAAAGGCTCCATCAAAG 59.380 47.619 8.11 0.00 35.66 2.77
4480 11338 0.532417 CTCTGCAGCTGGGCATAGAC 60.532 60.000 17.12 0.00 43.97 2.59
4635 11496 2.158943 AGCTGGCGTATAGTTCTTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
4644 11505 6.183360 GCGTATAGTTCTTTCCCCTAAAGGTA 60.183 42.308 0.00 0.00 44.10 3.08
4886 11748 1.909302 AGTGTCGGGAAGGATGTCATT 59.091 47.619 0.00 0.00 0.00 2.57
4931 11793 3.620488 GTCATACCAGAAGGCAATTCCA 58.380 45.455 0.00 0.00 38.84 3.53
5054 11916 6.139671 AGAGATTTCCTTCTGGCAGTATCTA 58.860 40.000 15.27 0.00 0.00 1.98
5097 11959 2.437413 GGGCTTCCTCCTGTTGTAAAG 58.563 52.381 0.00 0.00 0.00 1.85
5204 12066 0.321564 CCACTTCCCATGCGACAAGA 60.322 55.000 0.00 0.00 0.00 3.02
5488 12363 0.698238 TATGTGCAAGGGAAGGCTGT 59.302 50.000 0.00 0.00 0.00 4.40
5505 12386 0.390492 TGTGACCTGACACTGCAGAG 59.610 55.000 23.35 16.23 40.87 3.35
5512 12393 3.559657 GACACTGCAGAGCGTCGGT 62.560 63.158 23.35 0.00 0.00 4.69
5521 12402 2.288273 GCAGAGCGTCGGTAATATCCTT 60.288 50.000 0.00 0.00 0.00 3.36
5614 12495 8.650143 AATTCACTAAAAGCCTTTAGAATCCA 57.350 30.769 19.39 1.93 44.70 3.41
5825 12707 3.764237 TGTCTTAACCCACTCCTTGAC 57.236 47.619 0.00 0.00 0.00 3.18
6014 12901 9.906660 GAAAAACCAGTATCACATCATTGTAAA 57.093 29.630 0.00 0.00 33.76 2.01
6193 13082 2.778299 CCAAACTGCAGGCTACAACTA 58.222 47.619 19.93 0.00 0.00 2.24
6300 13189 5.877012 GTGAGATAGGAGCATCACAAAGAAA 59.123 40.000 0.00 0.00 41.32 2.52
6317 13206 2.852449 AGAAATGGTGCTCATTCCCCTA 59.148 45.455 6.38 0.00 44.68 3.53
6401 13311 6.539649 TTGTAGAGCACATTGTTGTAACTC 57.460 37.500 0.00 0.00 38.00 3.01
6526 13436 6.544038 TTGTTGAGTCATGTATCTGTGTTG 57.456 37.500 0.00 0.00 0.00 3.33
6527 13437 4.452114 TGTTGAGTCATGTATCTGTGTTGC 59.548 41.667 0.00 0.00 0.00 4.17
6528 13438 4.541973 TGAGTCATGTATCTGTGTTGCT 57.458 40.909 0.00 0.00 0.00 3.91
6529 13439 4.898320 TGAGTCATGTATCTGTGTTGCTT 58.102 39.130 0.00 0.00 0.00 3.91
6530 13440 6.036577 TGAGTCATGTATCTGTGTTGCTTA 57.963 37.500 0.00 0.00 0.00 3.09
6531 13441 6.643388 TGAGTCATGTATCTGTGTTGCTTAT 58.357 36.000 0.00 0.00 0.00 1.73
6532 13442 7.781056 TGAGTCATGTATCTGTGTTGCTTATA 58.219 34.615 0.00 0.00 0.00 0.98
6533 13443 8.257306 TGAGTCATGTATCTGTGTTGCTTATAA 58.743 33.333 0.00 0.00 0.00 0.98
6589 13499 9.896645 AAAGCTGAAGAAGATGACAGAAATATA 57.103 29.630 0.00 0.00 32.90 0.86
6643 13553 0.108138 ACTATCCTGCCGAACAGCAC 60.108 55.000 0.29 0.00 45.78 4.40
6775 13685 8.695456 TGACTGCTCAATAACTTACATCTATGA 58.305 33.333 0.00 0.00 0.00 2.15
6779 13689 9.702494 TGCTCAATAACTTACATCTATGATGAG 57.298 33.333 13.63 4.99 34.15 2.90
6829 13739 5.876357 TGCTCAATAACTTACAGGGAGTTT 58.124 37.500 0.00 0.00 38.28 2.66
6876 13786 7.923414 AAATTTTGTAGGTACATGGACTCTC 57.077 36.000 8.27 0.00 35.89 3.20
7070 13980 1.188219 ACACGAGGAGCAGACACCAT 61.188 55.000 0.00 0.00 0.00 3.55
7490 14401 4.692625 CGATTTTCTTCAGAAGCTTGGAGA 59.307 41.667 2.10 0.00 35.21 3.71
7544 14455 5.013079 TCAGTATGGAAGTGTCCTGATTGTT 59.987 40.000 0.00 0.00 45.22 2.83
7615 14526 4.193826 TCTGTTTCAGCTGTATGTCCTC 57.806 45.455 14.67 0.00 0.00 3.71
7676 14588 5.607477 TCTACGGTGATGACACTTCTTTTT 58.393 37.500 0.00 0.00 45.32 1.94
7698 14619 0.038709 CTGAGCTAGCGGGACATAGC 60.039 60.000 9.55 0.00 43.85 2.97
7822 14743 6.373216 CGACCAAAATCCAGTCCAAAAGTATA 59.627 38.462 0.00 0.00 0.00 1.47
7840 14761 6.591750 AGTATATTTAGCGAGGCTATGTGT 57.408 37.500 0.00 0.00 41.01 3.72
7843 14764 3.438297 TTTAGCGAGGCTATGTGTCTC 57.562 47.619 0.00 0.00 41.01 3.36
7848 14769 1.394618 GAGGCTATGTGTCTCGGAGT 58.605 55.000 4.69 0.00 37.69 3.85
7849 14770 1.751924 GAGGCTATGTGTCTCGGAGTT 59.248 52.381 4.69 0.00 37.69 3.01
7850 14771 2.166664 GAGGCTATGTGTCTCGGAGTTT 59.833 50.000 4.69 0.00 37.69 2.66
7851 14772 3.362706 AGGCTATGTGTCTCGGAGTTTA 58.637 45.455 4.69 0.00 0.00 2.01
7852 14773 3.961408 AGGCTATGTGTCTCGGAGTTTAT 59.039 43.478 4.69 0.00 0.00 1.40
7853 14774 5.138276 AGGCTATGTGTCTCGGAGTTTATA 58.862 41.667 4.69 0.59 0.00 0.98
7854 14775 5.241949 AGGCTATGTGTCTCGGAGTTTATAG 59.758 44.000 4.69 9.87 0.00 1.31
7855 14776 5.009811 GGCTATGTGTCTCGGAGTTTATAGT 59.990 44.000 4.69 0.00 0.00 2.12
7856 14777 6.144175 GCTATGTGTCTCGGAGTTTATAGTC 58.856 44.000 4.69 3.70 0.00 2.59
7857 14778 4.978083 TGTGTCTCGGAGTTTATAGTCC 57.022 45.455 4.69 0.00 40.04 3.85
7858 14779 4.597004 TGTGTCTCGGAGTTTATAGTCCT 58.403 43.478 4.69 0.00 41.09 3.85
7859 14780 5.014858 TGTGTCTCGGAGTTTATAGTCCTT 58.985 41.667 4.69 0.00 41.09 3.36
7860 14781 5.125097 TGTGTCTCGGAGTTTATAGTCCTTC 59.875 44.000 4.69 0.00 41.09 3.46
7861 14782 4.334759 TGTCTCGGAGTTTATAGTCCTTCG 59.665 45.833 4.69 0.00 41.09 3.79
7862 14783 4.335037 GTCTCGGAGTTTATAGTCCTTCGT 59.665 45.833 4.69 0.00 41.09 3.85
7863 14784 4.946157 TCTCGGAGTTTATAGTCCTTCGTT 59.054 41.667 4.69 0.00 41.09 3.85
7864 14785 5.416952 TCTCGGAGTTTATAGTCCTTCGTTT 59.583 40.000 4.69 0.00 41.09 3.60
7865 14786 5.404946 TCGGAGTTTATAGTCCTTCGTTTG 58.595 41.667 5.62 0.00 41.09 2.93
7866 14787 5.183713 TCGGAGTTTATAGTCCTTCGTTTGA 59.816 40.000 5.62 0.00 41.09 2.69
7882 14803 6.780706 TCGTTTGAAGATAAAGGAACACTC 57.219 37.500 0.00 0.00 33.16 3.51
7885 14806 6.292703 CGTTTGAAGATAAAGGAACACTCGTT 60.293 38.462 0.00 0.00 38.33 3.85
7890 14811 6.969828 AGATAAAGGAACACTCGTTGAATC 57.030 37.500 0.00 0.00 34.75 2.52
7891 14812 6.464222 AGATAAAGGAACACTCGTTGAATCA 58.536 36.000 0.00 0.00 34.75 2.57
7895 14816 4.899502 AGGAACACTCGTTGAATCATTCT 58.100 39.130 0.00 0.00 34.75 2.40
7903 14824 2.095768 CGTTGAATCATTCTGCCGTGTT 60.096 45.455 0.00 0.00 0.00 3.32
7904 14825 3.236816 GTTGAATCATTCTGCCGTGTTG 58.763 45.455 0.00 0.00 0.00 3.33
7932 14853 0.441533 CTTCACTGTGCTCGCATGAC 59.558 55.000 2.12 0.00 0.00 3.06
7980 16255 1.349688 TGACTACCGTTTGGCAATCCT 59.650 47.619 0.00 0.00 39.70 3.24
8105 16381 0.767375 TTGCAGAAGCTCTCAAGGGT 59.233 50.000 0.00 0.00 42.74 4.34
8113 16389 2.175202 AGCTCTCAAGGGTGTGACTAG 58.825 52.381 0.00 0.00 0.00 2.57
8114 16390 2.171840 GCTCTCAAGGGTGTGACTAGA 58.828 52.381 0.00 0.00 0.00 2.43
8115 16391 2.563179 GCTCTCAAGGGTGTGACTAGAA 59.437 50.000 0.00 0.00 0.00 2.10
8116 16392 3.006967 GCTCTCAAGGGTGTGACTAGAAA 59.993 47.826 0.00 0.00 0.00 2.52
8117 16393 4.503296 GCTCTCAAGGGTGTGACTAGAAAA 60.503 45.833 0.00 0.00 0.00 2.29
8118 16394 4.957296 TCTCAAGGGTGTGACTAGAAAAC 58.043 43.478 0.00 0.00 0.00 2.43
8120 16396 2.806244 CAAGGGTGTGACTAGAAAACGG 59.194 50.000 0.00 0.00 0.00 4.44
8121 16397 2.322658 AGGGTGTGACTAGAAAACGGA 58.677 47.619 0.00 0.00 0.00 4.69
8122 16398 2.904434 AGGGTGTGACTAGAAAACGGAT 59.096 45.455 0.00 0.00 0.00 4.18
8123 16399 3.000727 GGGTGTGACTAGAAAACGGATG 58.999 50.000 0.00 0.00 0.00 3.51
8124 16400 2.415512 GGTGTGACTAGAAAACGGATGC 59.584 50.000 0.00 0.00 0.00 3.91
8125 16401 2.092211 GTGTGACTAGAAAACGGATGCG 59.908 50.000 4.58 4.58 0.00 4.73
8127 16403 1.067142 TGACTAGAAAACGGATGCGCT 60.067 47.619 9.73 0.00 0.00 5.92
8128 16404 2.164827 TGACTAGAAAACGGATGCGCTA 59.835 45.455 9.73 0.00 0.00 4.26
8129 16405 3.184541 GACTAGAAAACGGATGCGCTAA 58.815 45.455 9.73 0.00 0.00 3.09
8130 16406 3.793559 ACTAGAAAACGGATGCGCTAAT 58.206 40.909 9.73 0.00 0.00 1.73
8132 16408 1.064060 AGAAAACGGATGCGCTAATGC 59.936 47.619 9.73 0.00 0.00 3.56
8142 16418 2.485122 GCTAATGCGCAACGGCTT 59.515 55.556 17.11 6.25 38.10 4.35
8143 16419 1.154035 GCTAATGCGCAACGGCTTT 60.154 52.632 17.11 5.37 38.10 3.51
8145 16421 0.857311 CTAATGCGCAACGGCTTTCG 60.857 55.000 17.11 0.00 45.88 3.46
8157 16433 2.334838 CGGCTTTCGTACTAGTTGCTT 58.665 47.619 0.00 0.00 0.00 3.91
8158 16434 3.504863 CGGCTTTCGTACTAGTTGCTTA 58.495 45.455 0.00 0.00 0.00 3.09
8159 16435 3.922240 CGGCTTTCGTACTAGTTGCTTAA 59.078 43.478 0.00 0.00 0.00 1.85
8160 16436 4.565564 CGGCTTTCGTACTAGTTGCTTAAT 59.434 41.667 0.00 0.00 0.00 1.40
8161 16437 5.276254 CGGCTTTCGTACTAGTTGCTTAATC 60.276 44.000 0.00 0.00 0.00 1.75
8163 16439 5.579511 GCTTTCGTACTAGTTGCTTAATCCA 59.420 40.000 0.00 0.00 0.00 3.41
8164 16440 6.258068 GCTTTCGTACTAGTTGCTTAATCCAT 59.742 38.462 0.00 0.00 0.00 3.41
8165 16441 7.201617 GCTTTCGTACTAGTTGCTTAATCCATT 60.202 37.037 0.00 0.00 0.00 3.16
8166 16442 7.534085 TTCGTACTAGTTGCTTAATCCATTG 57.466 36.000 0.00 0.00 0.00 2.82
8167 16443 5.522460 TCGTACTAGTTGCTTAATCCATTGC 59.478 40.000 0.00 0.00 0.00 3.56
8168 16444 5.523916 CGTACTAGTTGCTTAATCCATTGCT 59.476 40.000 0.00 0.00 0.00 3.91
8170 16446 6.199937 ACTAGTTGCTTAATCCATTGCTTG 57.800 37.500 0.00 0.00 0.00 4.01
8172 16448 5.473066 AGTTGCTTAATCCATTGCTTGTT 57.527 34.783 0.00 0.00 0.00 2.83
8173 16449 5.857268 AGTTGCTTAATCCATTGCTTGTTT 58.143 33.333 0.00 0.00 0.00 2.83
8174 16450 5.697633 AGTTGCTTAATCCATTGCTTGTTTG 59.302 36.000 0.00 0.00 0.00 2.93
8175 16451 4.567971 TGCTTAATCCATTGCTTGTTTGG 58.432 39.130 0.00 0.00 0.00 3.28
8176 16452 4.040217 TGCTTAATCCATTGCTTGTTTGGT 59.960 37.500 0.00 0.00 0.00 3.67
8177 16453 4.996758 GCTTAATCCATTGCTTGTTTGGTT 59.003 37.500 0.00 0.00 0.00 3.67
8178 16454 5.120674 GCTTAATCCATTGCTTGTTTGGTTC 59.879 40.000 0.00 0.00 0.00 3.62
8179 16455 4.686191 AATCCATTGCTTGTTTGGTTCA 57.314 36.364 0.00 0.00 0.00 3.18
8180 16456 3.451141 TCCATTGCTTGTTTGGTTCAC 57.549 42.857 0.00 0.00 0.00 3.18
8182 16458 2.481104 CCATTGCTTGTTTGGTTCACGT 60.481 45.455 0.00 0.00 0.00 4.49
8185 16461 1.400142 TGCTTGTTTGGTTCACGTCAG 59.600 47.619 0.00 0.00 0.00 3.51
8186 16462 1.859998 GCTTGTTTGGTTCACGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
8188 16464 1.454201 TGTTTGGTTCACGTCAGCAA 58.546 45.000 5.05 5.05 0.00 3.91
8189 16465 1.131504 TGTTTGGTTCACGTCAGCAAC 59.868 47.619 8.12 5.55 31.49 4.17
8190 16466 1.131504 GTTTGGTTCACGTCAGCAACA 59.868 47.619 8.12 0.00 31.49 3.33
8192 16468 2.535012 TGGTTCACGTCAGCAACATA 57.465 45.000 0.00 0.00 0.00 2.29
8193 16469 3.052455 TGGTTCACGTCAGCAACATAT 57.948 42.857 0.00 0.00 0.00 1.78
8194 16470 3.407698 TGGTTCACGTCAGCAACATATT 58.592 40.909 0.00 0.00 0.00 1.28
8195 16471 3.818210 TGGTTCACGTCAGCAACATATTT 59.182 39.130 0.00 0.00 0.00 1.40
8197 16473 5.219633 GGTTCACGTCAGCAACATATTTTT 58.780 37.500 0.00 0.00 0.00 1.94
8198 16474 6.017026 TGGTTCACGTCAGCAACATATTTTTA 60.017 34.615 0.00 0.00 0.00 1.52
8199 16475 7.027161 GGTTCACGTCAGCAACATATTTTTAT 58.973 34.615 0.00 0.00 0.00 1.40
8200 16476 7.008266 GGTTCACGTCAGCAACATATTTTTATG 59.992 37.037 0.00 0.00 0.00 1.90
8201 16477 6.027131 TCACGTCAGCAACATATTTTTATGC 58.973 36.000 0.00 0.00 37.28 3.14
8211 16487 8.909671 GCAACATATTTTTATGCTGATCTTAGC 58.090 33.333 0.00 0.00 43.95 3.09
8242 17440 1.476891 TGAGCTATTTTCGAGCGACCT 59.523 47.619 0.00 0.00 44.98 3.85
8243 17441 2.094182 TGAGCTATTTTCGAGCGACCTT 60.094 45.455 0.00 0.00 44.98 3.50
8247 17445 1.892209 ATTTTCGAGCGACCTTTGGT 58.108 45.000 0.00 0.00 39.44 3.67
8248 17446 0.941542 TTTTCGAGCGACCTTTGGTG 59.058 50.000 0.00 0.00 35.25 4.17
8251 17449 0.038892 TCGAGCGACCTTTGGTGTAC 60.039 55.000 0.00 0.00 35.25 2.90
8322 17523 6.721442 ATTTTCGAAAACGTTCTAAAACCG 57.279 33.333 24.68 0.00 39.69 4.44
8330 17531 7.149303 CGAAAACGTTCTAAAACCGTAAATTCC 60.149 37.037 0.00 0.00 31.27 3.01
8338 17539 4.499037 AAACCGTAAATTCCAGCACTTC 57.501 40.909 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 6.624352 AATTGTCATGCTTGCGAACTATAT 57.376 33.333 0.00 0.00 0.00 0.86
197 199 8.161425 ACCCTGTTTTGAGCTCTACTAATTTTA 58.839 33.333 16.19 0.00 0.00 1.52
228 230 8.646907 GGTACGGCTATAGTTTGCCATACAATT 61.647 40.741 11.37 0.00 46.11 2.32
315 3034 4.196193 CAAACTCACAGGGTACAGTTGAA 58.804 43.478 0.00 0.00 0.00 2.69
318 3037 2.775384 TCCAAACTCACAGGGTACAGTT 59.225 45.455 0.00 0.00 0.00 3.16
320 3039 3.485463 TTCCAAACTCACAGGGTACAG 57.515 47.619 0.00 0.00 0.00 2.74
325 3044 4.911390 AGTCTTATTCCAAACTCACAGGG 58.089 43.478 0.00 0.00 0.00 4.45
328 3047 4.349636 TGGGAGTCTTATTCCAAACTCACA 59.650 41.667 2.34 2.34 46.87 3.58
329 3048 4.906618 TGGGAGTCTTATTCCAAACTCAC 58.093 43.478 4.02 0.58 41.53 3.51
330 3049 5.779241 ATGGGAGTCTTATTCCAAACTCA 57.221 39.130 4.02 0.00 39.90 3.41
331 3050 7.509546 TCATATGGGAGTCTTATTCCAAACTC 58.490 38.462 2.13 0.00 37.90 3.01
344 3064 5.499139 TTTTGCGAAATCATATGGGAGTC 57.501 39.130 2.13 0.00 0.00 3.36
432 3181 2.344500 CCCGTTTAGCCCGTGTCA 59.656 61.111 0.00 0.00 0.00 3.58
476 3225 1.672854 CTGTCATGCCTTGCCCATGG 61.673 60.000 4.14 4.14 40.29 3.66
477 3226 1.672854 CCTGTCATGCCTTGCCCATG 61.673 60.000 0.00 0.00 41.03 3.66
478 3227 1.380785 CCTGTCATGCCTTGCCCAT 60.381 57.895 0.00 0.00 0.00 4.00
479 3228 2.036098 CCTGTCATGCCTTGCCCA 59.964 61.111 0.00 0.00 0.00 5.36
480 3229 1.751927 CTCCTGTCATGCCTTGCCC 60.752 63.158 0.00 0.00 0.00 5.36
481 3230 2.413142 GCTCCTGTCATGCCTTGCC 61.413 63.158 0.00 0.00 0.00 4.52
482 3231 0.107508 TAGCTCCTGTCATGCCTTGC 60.108 55.000 0.00 0.00 0.00 4.01
483 3232 2.408271 TTAGCTCCTGTCATGCCTTG 57.592 50.000 0.00 0.00 0.00 3.61
484 3233 3.285484 CATTTAGCTCCTGTCATGCCTT 58.715 45.455 0.00 0.00 0.00 4.35
485 3234 2.422519 CCATTTAGCTCCTGTCATGCCT 60.423 50.000 0.00 0.00 0.00 4.75
486 3235 1.952296 CCATTTAGCTCCTGTCATGCC 59.048 52.381 0.00 0.00 0.00 4.40
487 3236 1.952296 CCCATTTAGCTCCTGTCATGC 59.048 52.381 0.00 0.00 0.00 4.06
488 3237 1.952296 GCCCATTTAGCTCCTGTCATG 59.048 52.381 0.00 0.00 0.00 3.07
489 3238 1.133668 GGCCCATTTAGCTCCTGTCAT 60.134 52.381 0.00 0.00 0.00 3.06
490 3239 0.255890 GGCCCATTTAGCTCCTGTCA 59.744 55.000 0.00 0.00 0.00 3.58
491 3240 0.255890 TGGCCCATTTAGCTCCTGTC 59.744 55.000 0.00 0.00 0.00 3.51
492 3241 0.257039 CTGGCCCATTTAGCTCCTGT 59.743 55.000 0.00 0.00 0.00 4.00
493 3242 0.466922 CCTGGCCCATTTAGCTCCTG 60.467 60.000 0.00 0.00 0.00 3.86
494 3243 1.925888 CCTGGCCCATTTAGCTCCT 59.074 57.895 0.00 0.00 0.00 3.69
495 3244 1.829970 GCCTGGCCCATTTAGCTCC 60.830 63.158 7.66 0.00 0.00 4.70
496 3245 1.829970 GGCCTGGCCCATTTAGCTC 60.830 63.158 27.77 0.00 44.06 4.09
497 3246 2.280079 GGCCTGGCCCATTTAGCT 59.720 61.111 27.77 0.00 44.06 3.32
538 3294 0.178998 CAGCCTAGCATCCCAAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
570 3326 0.533308 TAAAAAGGCCGTGTCGTGCT 60.533 50.000 0.00 0.00 0.00 4.40
664 3421 0.462759 GCATGCCAGACCCACTAGTC 60.463 60.000 6.36 0.00 37.01 2.59
748 3668 3.955543 TTGCCCGGGAAGGAATGGC 62.956 63.158 29.31 5.47 45.00 4.40
898 7672 3.140325 TCTTTTTCTAGTGTGGGCCTG 57.860 47.619 4.53 0.00 0.00 4.85
1102 7876 0.178987 GCGATGTAGGAGGAGGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
1474 8248 1.608717 GGAGGAGAAGAAGAGGCGCA 61.609 60.000 10.83 0.00 0.00 6.09
1547 8321 1.681076 GTGGAAGGAAAGCGGGGTA 59.319 57.895 0.00 0.00 0.00 3.69
1805 8579 1.674221 CGAAACCTCTTCTCAGGGCTG 60.674 57.143 0.00 0.00 37.96 4.85
1809 8583 1.338200 CCCACGAAACCTCTTCTCAGG 60.338 57.143 0.00 0.00 39.80 3.86
1841 8615 3.316573 CTGAAGCCGGTCCCTCACC 62.317 68.421 1.90 0.00 42.69 4.02
1859 8633 1.224592 CACCTGTATGCCCCTGGAC 59.775 63.158 0.00 0.00 0.00 4.02
2147 8921 1.207089 ACATGTATCCTGGACACACCG 59.793 52.381 10.48 7.36 42.61 4.94
2195 8969 1.210478 TCTCTGCCCATTAACTGCTCC 59.790 52.381 0.00 0.00 0.00 4.70
2204 8978 1.147824 CTCGCCATCTCTGCCCATT 59.852 57.895 0.00 0.00 0.00 3.16
2227 9001 1.375523 GGCAACCCACGTACCAGAG 60.376 63.158 0.00 0.00 0.00 3.35
2291 9065 3.372440 AGAAGCCGATGAGGGAAAAAT 57.628 42.857 0.00 0.00 41.48 1.82
2300 9074 1.347707 ACCAACTCAAGAAGCCGATGA 59.652 47.619 0.00 0.00 0.00 2.92
2312 9086 3.071457 TCTCATCAGCAAGAACCAACTCA 59.929 43.478 0.00 0.00 0.00 3.41
2327 9101 2.011947 CGAAGGCAATTGCTCTCATCA 58.988 47.619 28.42 0.00 41.70 3.07
2388 9162 7.906327 ACCATTGCACAATAGTTTTTCCTATT 58.094 30.769 0.00 0.00 37.98 1.73
2859 9634 1.000486 CCCCGTCCTCCTCTGAGAA 60.000 63.158 6.17 0.00 41.42 2.87
2873 9648 1.903877 AACAGACATGAGGAGCCCCG 61.904 60.000 0.00 0.00 37.58 5.73
3192 9970 6.931840 AGAATAATGGAAGCTTCGGAGATAAC 59.068 38.462 19.91 4.39 35.04 1.89
3373 10151 6.191315 ACATGTTACTATCTCACTGAGGACT 58.809 40.000 6.20 0.00 0.00 3.85
3374 10152 6.458232 ACATGTTACTATCTCACTGAGGAC 57.542 41.667 6.20 0.00 0.00 3.85
3376 10154 6.515862 GCCTACATGTTACTATCTCACTGAGG 60.516 46.154 2.30 0.00 0.00 3.86
3377 10155 6.039829 TGCCTACATGTTACTATCTCACTGAG 59.960 42.308 2.30 0.00 0.00 3.35
3378 10156 5.891551 TGCCTACATGTTACTATCTCACTGA 59.108 40.000 2.30 0.00 0.00 3.41
3379 10157 6.149129 TGCCTACATGTTACTATCTCACTG 57.851 41.667 2.30 0.00 0.00 3.66
3380 10158 6.791867 TTGCCTACATGTTACTATCTCACT 57.208 37.500 2.30 0.00 0.00 3.41
3381 10159 8.361139 AGTATTGCCTACATGTTACTATCTCAC 58.639 37.037 2.30 0.00 32.34 3.51
3382 10160 8.478775 AGTATTGCCTACATGTTACTATCTCA 57.521 34.615 2.30 0.00 32.34 3.27
3416 10204 4.639310 TGTTAAGGCGTACAAGACCAAAAA 59.361 37.500 0.00 0.00 0.00 1.94
3467 10255 9.110502 GACCTGATTATTTCCAACCTAAGTAAG 57.889 37.037 0.00 0.00 0.00 2.34
3512 10300 4.127171 TCTTCTGTTTTGAACCTTCCTCG 58.873 43.478 0.00 0.00 0.00 4.63
3611 10399 3.807622 TGGTCTTCTCAGCAAACTTAACG 59.192 43.478 0.00 0.00 0.00 3.18
3678 10466 6.038356 CCAATAGCTCAACAAATAAAGCCTG 58.962 40.000 0.00 0.00 35.32 4.85
3754 10543 7.971368 ACAAATAAAGCCCTGTAATGGTTAT 57.029 32.000 0.00 0.00 0.00 1.89
3900 10746 9.051679 GGGTATGTTGCTTTTACAATTTTCTTT 57.948 29.630 0.00 0.00 0.00 2.52
3913 10759 5.543507 TCAATTTGTGGGTATGTTGCTTT 57.456 34.783 0.00 0.00 0.00 3.51
3976 10822 2.524569 ACTTTGCCCGTTTTGAATGG 57.475 45.000 0.00 0.00 37.31 3.16
4119 10974 7.767261 TGCTTTTGTTTCTAGTTTAGCAAGAA 58.233 30.769 0.00 0.00 34.76 2.52
4127 10982 5.509670 GGGCAGATGCTTTTGTTTCTAGTTT 60.510 40.000 4.59 0.00 41.70 2.66
4158 11013 1.891060 GCACGCTCGACAGAACCTTG 61.891 60.000 0.00 0.00 0.00 3.61
4165 11020 1.069924 CTTCAGAGCACGCTCGACAG 61.070 60.000 13.12 6.69 46.90 3.51
4202 11058 6.173339 ACAACGAGGTTACTGAATTGATCAT 58.827 36.000 0.00 0.00 37.44 2.45
4251 11107 4.096081 GGAATGCTCAAGTCTTTGATGGAG 59.904 45.833 0.00 0.00 42.19 3.86
4261 11117 1.760192 ATGCCAGGAATGCTCAAGTC 58.240 50.000 0.00 0.00 0.00 3.01
4389 11246 0.461961 GTTCGGTCTGCAGGAGCTAT 59.538 55.000 15.13 0.00 42.74 2.97
4480 11338 5.634118 AGTTGTATCCCATAATGGATGTGG 58.366 41.667 4.77 0.00 44.87 4.17
4635 11496 5.086104 TCTACAAGCTGCTTACCTTTAGG 57.914 43.478 15.51 2.56 42.17 2.69
4644 11505 3.937706 CTGCATACTTCTACAAGCTGCTT 59.062 43.478 9.53 9.53 40.14 3.91
4727 11589 1.882912 ATGAAGTCTTGAGCAACGCA 58.117 45.000 0.00 0.00 0.00 5.24
4728 11590 2.977405 AATGAAGTCTTGAGCAACGC 57.023 45.000 0.00 0.00 0.00 4.84
4886 11748 2.478890 GCTCGACTGCGGTAGGCTA 61.479 63.158 0.00 0.00 44.05 3.93
4931 11793 3.737559 TGCAAGTTAGGGAATGGACAT 57.262 42.857 0.00 0.00 0.00 3.06
5054 11916 4.468643 CGTGTTATAATTGGTTTGCACGT 58.531 39.130 10.92 0.00 42.02 4.49
5097 11959 0.033781 TGCAAGTTCATGGCAAAGGC 59.966 50.000 0.00 0.00 34.05 4.35
5204 12066 1.142688 AGGCCAAGGGAGGACAATGT 61.143 55.000 5.01 0.00 40.05 2.71
5488 12363 1.368950 GCTCTGCAGTGTCAGGTCA 59.631 57.895 14.67 0.00 34.91 4.02
5505 12386 1.860676 TGCAAGGATATTACCGACGC 58.139 50.000 0.00 0.00 34.73 5.19
5512 12393 6.719370 AGACCAACAAACTTGCAAGGATATTA 59.281 34.615 29.18 0.00 0.00 0.98
5521 12402 5.590530 ATGTTTAGACCAACAAACTTGCA 57.409 34.783 0.00 0.00 40.07 4.08
5614 12495 3.640029 CCAGCAAGCAGGGATTATCAAAT 59.360 43.478 0.00 0.00 0.00 2.32
5771 12653 8.244802 GCTCTATCGCCTTATCTTTTCATACTA 58.755 37.037 0.00 0.00 0.00 1.82
5956 12839 4.818005 TGCATGATCAATTTGATAGCGTCT 59.182 37.500 11.79 0.00 37.20 4.18
6174 13063 5.376854 AATTAGTTGTAGCCTGCAGTTTG 57.623 39.130 13.81 0.00 0.00 2.93
6193 13082 5.716703 ACAGCAAATCCCTAGCAGTAAAATT 59.283 36.000 0.00 0.00 0.00 1.82
6300 13189 3.756082 TTTTAGGGGAATGAGCACCAT 57.244 42.857 0.00 0.00 36.99 3.55
6324 13231 2.487762 CAAGGAAAATGAGCGCCACTTA 59.512 45.455 2.29 0.00 0.00 2.24
6331 13238 4.156556 TCAAAGGATCAAGGAAAATGAGCG 59.843 41.667 0.00 0.00 34.12 5.03
6476 13386 7.067615 TGAGAACAAATAAAGGCTAACACAACA 59.932 33.333 0.00 0.00 0.00 3.33
6482 13392 8.915654 CAACAATGAGAACAAATAAAGGCTAAC 58.084 33.333 0.00 0.00 0.00 2.34
6530 13440 9.620259 CAGTTTCTCCTTAAGGAATAAGCTTAT 57.380 33.333 24.31 13.37 44.91 1.73
6531 13441 8.822805 TCAGTTTCTCCTTAAGGAATAAGCTTA 58.177 33.333 24.31 16.01 44.91 3.09
6532 13442 7.690256 TCAGTTTCTCCTTAAGGAATAAGCTT 58.310 34.615 24.31 3.48 44.91 3.74
6533 13443 7.259088 TCAGTTTCTCCTTAAGGAATAAGCT 57.741 36.000 24.31 22.25 44.91 3.74
6548 13458 7.920738 TCTTCAGCTTTAACTTTCAGTTTCTC 58.079 34.615 0.00 0.00 39.51 2.87
6643 13553 6.438741 TGGCTCCAAGAGATCCTAATATGTAG 59.561 42.308 0.00 0.00 0.00 2.74
6711 13621 4.532521 ACTCCCTGTAAGTTATTGAGCAGT 59.467 41.667 0.00 0.00 0.00 4.40
6876 13786 4.750021 TCTTCTTGATCACATCCTCCAG 57.250 45.455 0.00 0.00 0.00 3.86
7070 13980 2.917227 TGCTCCTCGTGCCTGTCA 60.917 61.111 0.00 0.00 0.00 3.58
7109 14019 4.379243 CTGCGCTCCCTGTTCCGT 62.379 66.667 9.73 0.00 0.00 4.69
7299 14209 2.433145 CGGCTGCTGCTTCTTCGA 60.433 61.111 15.64 0.00 39.59 3.71
7466 14376 3.189287 TCCAAGCTTCTGAAGAAAATCGC 59.811 43.478 21.06 4.60 33.07 4.58
7490 14401 1.692121 CCTTCCCTGGAGCTCAGAGAT 60.692 57.143 17.19 0.00 46.18 2.75
7698 14619 1.214367 AAAACATATAGTCGCGCCCG 58.786 50.000 0.00 0.00 0.00 6.13
7822 14743 3.551046 CGAGACACATAGCCTCGCTAAAT 60.551 47.826 0.00 0.00 44.62 1.40
7840 14761 4.521146 ACGAAGGACTATAAACTCCGAGA 58.479 43.478 1.33 0.00 0.00 4.04
7843 14764 5.404946 TCAAACGAAGGACTATAAACTCCG 58.595 41.667 0.00 0.00 0.00 4.63
7844 14765 7.095270 TCTTCAAACGAAGGACTATAAACTCC 58.905 38.462 2.58 0.00 40.35 3.85
7845 14766 8.705048 ATCTTCAAACGAAGGACTATAAACTC 57.295 34.615 2.58 0.00 40.35 3.01
7849 14770 9.595823 CCTTTATCTTCAAACGAAGGACTATAA 57.404 33.333 2.58 0.00 40.35 0.98
7850 14771 8.974238 TCCTTTATCTTCAAACGAAGGACTATA 58.026 33.333 2.58 0.00 40.35 1.31
7851 14772 7.848128 TCCTTTATCTTCAAACGAAGGACTAT 58.152 34.615 2.58 0.00 40.35 2.12
7852 14773 7.235935 TCCTTTATCTTCAAACGAAGGACTA 57.764 36.000 2.58 0.00 40.35 2.59
7853 14774 6.110411 TCCTTTATCTTCAAACGAAGGACT 57.890 37.500 2.58 0.00 40.35 3.85
7854 14775 6.204108 TGTTCCTTTATCTTCAAACGAAGGAC 59.796 38.462 2.35 0.56 41.53 3.85
7855 14776 6.204108 GTGTTCCTTTATCTTCAAACGAAGGA 59.796 38.462 2.58 0.00 40.35 3.36
7856 14777 6.204882 AGTGTTCCTTTATCTTCAAACGAAGG 59.795 38.462 2.58 0.00 40.35 3.46
7857 14778 7.190920 AGTGTTCCTTTATCTTCAAACGAAG 57.809 36.000 0.00 0.00 41.16 3.79
7858 14779 6.073980 CGAGTGTTCCTTTATCTTCAAACGAA 60.074 38.462 0.00 0.00 0.00 3.85
7859 14780 5.404366 CGAGTGTTCCTTTATCTTCAAACGA 59.596 40.000 0.00 0.00 0.00 3.85
7860 14781 5.176958 ACGAGTGTTCCTTTATCTTCAAACG 59.823 40.000 0.00 0.00 0.00 3.60
7861 14782 6.541111 ACGAGTGTTCCTTTATCTTCAAAC 57.459 37.500 0.00 0.00 0.00 2.93
7862 14783 6.764085 TCAACGAGTGTTCCTTTATCTTCAAA 59.236 34.615 0.00 0.00 35.72 2.69
7863 14784 6.285224 TCAACGAGTGTTCCTTTATCTTCAA 58.715 36.000 0.00 0.00 35.72 2.69
7864 14785 5.849510 TCAACGAGTGTTCCTTTATCTTCA 58.150 37.500 0.00 0.00 35.72 3.02
7865 14786 6.780706 TTCAACGAGTGTTCCTTTATCTTC 57.219 37.500 0.00 0.00 35.72 2.87
7866 14787 6.934645 TGATTCAACGAGTGTTCCTTTATCTT 59.065 34.615 0.00 0.00 35.72 2.40
7871 14792 5.765182 AGAATGATTCAACGAGTGTTCCTTT 59.235 36.000 8.03 0.00 35.72 3.11
7879 14800 2.002586 CGGCAGAATGATTCAACGAGT 58.997 47.619 8.03 0.00 39.69 4.18
7882 14803 1.464608 ACACGGCAGAATGATTCAACG 59.535 47.619 8.03 10.59 39.69 4.10
7885 14806 2.777094 TCAACACGGCAGAATGATTCA 58.223 42.857 8.03 0.00 39.69 2.57
7890 14811 2.941064 AGATCATCAACACGGCAGAATG 59.059 45.455 0.00 0.00 40.87 2.67
7891 14812 3.201290 GAGATCATCAACACGGCAGAAT 58.799 45.455 0.00 0.00 0.00 2.40
7895 14816 0.904649 AGGAGATCATCAACACGGCA 59.095 50.000 0.00 0.00 0.00 5.69
7903 14824 2.836372 AGCACAGTGAAGGAGATCATCA 59.164 45.455 4.15 0.00 0.00 3.07
7904 14825 3.456280 GAGCACAGTGAAGGAGATCATC 58.544 50.000 4.15 0.00 0.00 2.92
7932 14853 2.124983 CGGGGACACATGAGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
7980 16255 6.583427 GCATTATCGCATGAATTGATTGCTTA 59.417 34.615 0.00 0.00 34.23 3.09
8075 16351 2.091994 AGCTTCTGCAATAAGGATGGCT 60.092 45.455 9.77 3.73 42.74 4.75
8105 16381 2.333926 CGCATCCGTTTTCTAGTCACA 58.666 47.619 0.00 0.00 0.00 3.58
8113 16389 1.466855 GCATTAGCGCATCCGTTTTC 58.533 50.000 11.47 0.00 36.67 2.29
8114 16390 3.622459 GCATTAGCGCATCCGTTTT 57.378 47.368 11.47 0.00 36.67 2.43
8125 16401 1.133946 GAAAGCCGTTGCGCATTAGC 61.134 55.000 12.75 14.69 44.33 3.09
8127 16403 1.133664 CGAAAGCCGTTGCGCATTA 59.866 52.632 12.75 0.00 44.33 1.90
8128 16404 2.126888 CGAAAGCCGTTGCGCATT 60.127 55.556 12.75 0.00 44.33 3.56
8137 16413 1.992170 AGCAACTAGTACGAAAGCCG 58.008 50.000 0.00 0.00 45.44 5.52
8138 16414 5.006455 GGATTAAGCAACTAGTACGAAAGCC 59.994 44.000 0.00 0.84 0.00 4.35
8139 16415 5.579511 TGGATTAAGCAACTAGTACGAAAGC 59.420 40.000 0.00 0.00 0.00 3.51
8140 16416 7.772332 ATGGATTAAGCAACTAGTACGAAAG 57.228 36.000 0.00 0.00 0.00 2.62
8142 16418 6.036735 GCAATGGATTAAGCAACTAGTACGAA 59.963 38.462 0.00 0.00 0.00 3.85
8143 16419 5.522460 GCAATGGATTAAGCAACTAGTACGA 59.478 40.000 0.00 0.00 0.00 3.43
8145 16421 6.927294 AGCAATGGATTAAGCAACTAGTAC 57.073 37.500 0.00 0.00 0.00 2.73
8147 16423 5.711976 ACAAGCAATGGATTAAGCAACTAGT 59.288 36.000 0.00 0.00 0.00 2.57
8152 16428 4.996122 CCAAACAAGCAATGGATTAAGCAA 59.004 37.500 0.00 0.00 36.27 3.91
8153 16429 4.040217 ACCAAACAAGCAATGGATTAAGCA 59.960 37.500 0.00 0.00 37.66 3.91
8157 16433 5.537188 GTGAACCAAACAAGCAATGGATTA 58.463 37.500 0.00 0.00 37.66 1.75
8158 16434 4.379652 GTGAACCAAACAAGCAATGGATT 58.620 39.130 0.00 0.00 37.66 3.01
8159 16435 3.552684 CGTGAACCAAACAAGCAATGGAT 60.553 43.478 0.00 0.00 37.66 3.41
8160 16436 2.223688 CGTGAACCAAACAAGCAATGGA 60.224 45.455 0.00 0.00 37.66 3.41
8161 16437 2.126467 CGTGAACCAAACAAGCAATGG 58.874 47.619 0.00 0.00 40.16 3.16
8163 16439 2.425312 TGACGTGAACCAAACAAGCAAT 59.575 40.909 0.00 0.00 0.00 3.56
8164 16440 1.813178 TGACGTGAACCAAACAAGCAA 59.187 42.857 0.00 0.00 0.00 3.91
8165 16441 1.400142 CTGACGTGAACCAAACAAGCA 59.600 47.619 0.00 0.00 0.00 3.91
8166 16442 1.859998 GCTGACGTGAACCAAACAAGC 60.860 52.381 0.00 0.00 0.00 4.01
8167 16443 1.400142 TGCTGACGTGAACCAAACAAG 59.600 47.619 0.00 0.00 0.00 3.16
8168 16444 1.454201 TGCTGACGTGAACCAAACAA 58.546 45.000 0.00 0.00 0.00 2.83
8170 16446 1.131504 TGTTGCTGACGTGAACCAAAC 59.868 47.619 0.00 0.00 0.00 2.93
8172 16448 1.674359 ATGTTGCTGACGTGAACCAA 58.326 45.000 0.00 0.00 0.00 3.67
8173 16449 2.535012 TATGTTGCTGACGTGAACCA 57.465 45.000 0.00 0.00 0.00 3.67
8174 16450 4.419522 AAATATGTTGCTGACGTGAACC 57.580 40.909 0.00 0.00 0.00 3.62
8175 16451 7.461416 GCATAAAAATATGTTGCTGACGTGAAC 60.461 37.037 0.00 0.00 0.00 3.18
8176 16452 6.526325 GCATAAAAATATGTTGCTGACGTGAA 59.474 34.615 0.00 0.00 0.00 3.18
8177 16453 6.027131 GCATAAAAATATGTTGCTGACGTGA 58.973 36.000 0.00 0.00 0.00 4.35
8178 16454 6.029607 AGCATAAAAATATGTTGCTGACGTG 58.970 36.000 0.00 0.00 41.79 4.49
8179 16455 6.194796 AGCATAAAAATATGTTGCTGACGT 57.805 33.333 0.00 0.00 41.79 4.34
8185 16461 8.909671 GCTAAGATCAGCATAAAAATATGTTGC 58.090 33.333 7.54 0.00 41.40 4.17
8186 16462 9.955208 TGCTAAGATCAGCATAAAAATATGTTG 57.045 29.630 3.70 6.40 46.41 3.33
8213 16489 6.325596 GCTCGAAAATAGCTCAATCCTTTTT 58.674 36.000 0.00 0.00 37.01 1.94
8214 16490 5.447818 CGCTCGAAAATAGCTCAATCCTTTT 60.448 40.000 0.00 0.00 37.85 2.27
8216 16492 3.557595 CGCTCGAAAATAGCTCAATCCTT 59.442 43.478 0.00 0.00 37.85 3.36
8217 16493 3.126831 CGCTCGAAAATAGCTCAATCCT 58.873 45.455 0.00 0.00 37.85 3.24
8219 16495 3.060205 GGTCGCTCGAAAATAGCTCAATC 60.060 47.826 0.00 0.00 37.85 2.67
8220 16496 2.866762 GGTCGCTCGAAAATAGCTCAAT 59.133 45.455 0.00 0.00 37.85 2.57
8221 16497 2.094182 AGGTCGCTCGAAAATAGCTCAA 60.094 45.455 0.00 0.00 37.85 3.02
8222 16498 1.476891 AGGTCGCTCGAAAATAGCTCA 59.523 47.619 0.00 0.00 37.85 4.26
8223 16499 2.211353 AGGTCGCTCGAAAATAGCTC 57.789 50.000 0.00 0.00 37.85 4.09
8224 16500 2.673368 CAAAGGTCGCTCGAAAATAGCT 59.327 45.455 0.00 0.00 37.85 3.32
8225 16501 2.223044 CCAAAGGTCGCTCGAAAATAGC 60.223 50.000 0.00 0.00 36.60 2.97
8227 16503 2.739913 CACCAAAGGTCGCTCGAAAATA 59.260 45.455 0.00 0.00 31.02 1.40
8228 16504 1.535462 CACCAAAGGTCGCTCGAAAAT 59.465 47.619 0.00 0.00 31.02 1.82
8229 16505 0.941542 CACCAAAGGTCGCTCGAAAA 59.058 50.000 0.00 0.00 31.02 2.29
8230 16506 0.179067 ACACCAAAGGTCGCTCGAAA 60.179 50.000 0.00 0.00 31.02 3.46
8231 16507 0.675083 TACACCAAAGGTCGCTCGAA 59.325 50.000 0.00 0.00 31.02 3.71
8232 16508 0.038892 GTACACCAAAGGTCGCTCGA 60.039 55.000 0.00 0.00 31.02 4.04
8233 16509 1.012486 GGTACACCAAAGGTCGCTCG 61.012 60.000 0.00 0.00 31.02 5.03
8234 16510 0.672711 GGGTACACCAAAGGTCGCTC 60.673 60.000 0.00 0.00 39.85 5.03
8320 17521 4.497473 TTTGAAGTGCTGGAATTTACGG 57.503 40.909 0.00 0.00 0.00 4.02
8322 17523 8.915654 CAAGTATTTTGAAGTGCTGGAATTTAC 58.084 33.333 0.00 0.00 0.00 2.01
8371 17572 7.707035 ACAATTTCTTTACACGGCATTTAACAA 59.293 29.630 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.