Multiple sequence alignment - TraesCS3A01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G146300 chr3A 100.000 2267 0 0 1 2267 128163948 128166214 0.000000e+00 4187.0
1 TraesCS3A01G146300 chr3A 84.615 494 31 12 944 1426 130896647 130896188 1.230000e-122 449.0
2 TraesCS3A01G146300 chr3A 77.652 264 37 9 451 700 130897169 130896914 8.440000e-30 141.0
3 TraesCS3A01G146300 chr3B 89.922 1419 61 33 200 1564 173557664 173559054 0.000000e+00 1753.0
4 TraesCS3A01G146300 chr3B 90.066 453 37 5 1817 2265 173561809 173562257 4.200000e-162 580.0
5 TraesCS3A01G146300 chr3B 87.298 433 38 9 944 1365 175953212 175952786 1.580000e-131 479.0
6 TraesCS3A01G146300 chr3B 76.644 441 78 17 1580 2001 789030984 789030550 1.050000e-53 220.0
7 TraesCS3A01G146300 chr3B 75.682 440 85 12 1580 2001 795050249 795049814 1.370000e-47 200.0
8 TraesCS3A01G146300 chr3B 91.603 131 10 1 1702 1831 173559769 173559899 1.790000e-41 180.0
9 TraesCS3A01G146300 chr3B 89.109 101 10 1 1574 1674 173559675 173559774 8.500000e-25 124.0
10 TraesCS3A01G146300 chr3B 86.000 100 10 3 758 853 175953374 175953275 1.110000e-18 104.0
11 TraesCS3A01G146300 chr3B 97.619 42 1 0 1580 1621 805559599 805559558 3.120000e-09 73.1
12 TraesCS3A01G146300 chr3D 89.890 1088 39 21 519 1564 121976890 121977948 0.000000e+00 1334.0
13 TraesCS3A01G146300 chr3D 91.056 682 48 6 1571 2244 121978639 121979315 0.000000e+00 909.0
14 TraesCS3A01G146300 chr3D 94.030 335 13 2 200 534 121976545 121976872 3.360000e-138 501.0
15 TraesCS3A01G146300 chr3D 85.976 164 9 8 612 761 123368358 123368195 1.800000e-36 163.0
16 TraesCS3A01G146300 chr3D 92.683 41 3 0 1580 1620 4954575 4954535 2.430000e-05 60.2
17 TraesCS3A01G146300 chr7A 78.132 439 75 15 1580 2001 26041365 26041799 2.230000e-65 259.0
18 TraesCS3A01G146300 chr7A 76.279 430 69 19 1580 1989 263367323 263367739 4.940000e-47 198.0
19 TraesCS3A01G146300 chr1D 77.727 440 76 15 1580 2001 65852767 65852332 1.340000e-62 250.0
20 TraesCS3A01G146300 chr1D 87.234 188 17 5 13 199 202986586 202986767 8.210000e-50 207.0
21 TraesCS3A01G146300 chr1A 77.778 441 74 13 1580 2001 516074179 516074614 1.340000e-62 250.0
22 TraesCS3A01G146300 chr7B 77.221 439 76 14 1582 2001 456911004 456911437 3.760000e-58 235.0
23 TraesCS3A01G146300 chr7B 77.241 435 75 15 1582 1998 749668408 749668836 1.350000e-57 233.0
24 TraesCS3A01G146300 chr7B 100.000 33 0 0 1580 1612 525595833 525595865 6.760000e-06 62.1
25 TraesCS3A01G146300 chr5A 76.417 441 80 17 1580 2001 673679585 673680020 1.360000e-52 217.0
26 TraesCS3A01G146300 chr2A 84.239 184 23 3 17 199 37100964 37101142 8.320000e-40 174.0
27 TraesCS3A01G146300 chr5D 100.000 33 0 0 1580 1612 388427770 388427738 6.760000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G146300 chr3A 128163948 128166214 2266 False 4187.000000 4187 100.000000 1 2267 1 chr3A.!!$F1 2266
1 TraesCS3A01G146300 chr3A 130896188 130897169 981 True 295.000000 449 81.133500 451 1426 2 chr3A.!!$R1 975
2 TraesCS3A01G146300 chr3B 173557664 173562257 4593 False 659.250000 1753 90.175000 200 2265 4 chr3B.!!$F1 2065
3 TraesCS3A01G146300 chr3B 175952786 175953374 588 True 291.500000 479 86.649000 758 1365 2 chr3B.!!$R4 607
4 TraesCS3A01G146300 chr3D 121976545 121979315 2770 False 914.666667 1334 91.658667 200 2244 3 chr3D.!!$F1 2044


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.034863 TCAATCAAACTACCGCCCCC 60.035 55.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 2532 0.89972 TCCGTTGTACATGGAGGTCC 59.1 55.0 12.12 0.0 35.38 4.46 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.644044 GCAAAATTGCGAAAATGCTACA 57.356 36.364 1.90 0.00 45.11 2.74
30 31 4.385379 GCAAAATTGCGAAAATGCTACAC 58.615 39.130 1.90 0.00 45.11 2.90
31 32 4.666402 GCAAAATTGCGAAAATGCTACACC 60.666 41.667 1.90 0.00 45.11 4.16
32 33 4.519540 AAATTGCGAAAATGCTACACCT 57.480 36.364 0.00 0.00 35.36 4.00
33 34 5.637006 AAATTGCGAAAATGCTACACCTA 57.363 34.783 0.00 0.00 35.36 3.08
34 35 4.616181 ATTGCGAAAATGCTACACCTAC 57.384 40.909 0.00 0.00 35.36 3.18
35 36 1.996898 TGCGAAAATGCTACACCTACG 59.003 47.619 0.00 0.00 35.36 3.51
36 37 2.264813 GCGAAAATGCTACACCTACGA 58.735 47.619 0.00 0.00 0.00 3.43
37 38 2.669434 GCGAAAATGCTACACCTACGAA 59.331 45.455 0.00 0.00 0.00 3.85
38 39 3.241995 GCGAAAATGCTACACCTACGAAG 60.242 47.826 0.00 0.00 0.00 3.79
39 40 4.171005 CGAAAATGCTACACCTACGAAGA 58.829 43.478 0.00 0.00 0.00 2.87
40 41 4.265556 CGAAAATGCTACACCTACGAAGAG 59.734 45.833 0.00 0.00 0.00 2.85
41 42 3.802948 AATGCTACACCTACGAAGAGG 57.197 47.619 0.00 0.00 42.89 3.69
47 48 4.913126 CCTACGAAGAGGTGCCAC 57.087 61.111 0.00 0.00 0.00 5.01
48 49 1.153823 CCTACGAAGAGGTGCCACG 60.154 63.158 0.00 0.00 0.00 4.94
49 50 1.585006 CTACGAAGAGGTGCCACGT 59.415 57.895 0.00 0.00 40.23 4.49
50 51 0.806868 CTACGAAGAGGTGCCACGTA 59.193 55.000 0.00 0.00 38.18 3.57
51 52 0.523072 TACGAAGAGGTGCCACGTAC 59.477 55.000 0.00 0.00 38.18 3.67
52 53 1.445582 CGAAGAGGTGCCACGTACC 60.446 63.158 0.00 0.00 38.59 3.34
53 54 1.079336 GAAGAGGTGCCACGTACCC 60.079 63.158 2.29 0.00 39.11 3.69
54 55 1.535687 AAGAGGTGCCACGTACCCT 60.536 57.895 2.29 0.00 39.11 4.34
55 56 0.251922 AAGAGGTGCCACGTACCCTA 60.252 55.000 2.29 0.00 39.11 3.53
56 57 0.969409 AGAGGTGCCACGTACCCTAC 60.969 60.000 2.29 0.00 39.11 3.18
67 68 3.848272 CGTACCCTACGTAACTTTCCA 57.152 47.619 0.00 0.00 46.41 3.53
68 69 4.173036 CGTACCCTACGTAACTTTCCAA 57.827 45.455 0.00 0.00 46.41 3.53
69 70 4.555262 CGTACCCTACGTAACTTTCCAAA 58.445 43.478 0.00 0.00 46.41 3.28
70 71 4.987912 CGTACCCTACGTAACTTTCCAAAA 59.012 41.667 0.00 0.00 46.41 2.44
71 72 5.107491 CGTACCCTACGTAACTTTCCAAAAC 60.107 44.000 0.00 0.00 46.41 2.43
72 73 4.779696 ACCCTACGTAACTTTCCAAAACA 58.220 39.130 0.00 0.00 0.00 2.83
73 74 5.379187 ACCCTACGTAACTTTCCAAAACAT 58.621 37.500 0.00 0.00 0.00 2.71
74 75 5.471116 ACCCTACGTAACTTTCCAAAACATC 59.529 40.000 0.00 0.00 0.00 3.06
75 76 5.470777 CCCTACGTAACTTTCCAAAACATCA 59.529 40.000 0.00 0.00 0.00 3.07
76 77 6.016943 CCCTACGTAACTTTCCAAAACATCAA 60.017 38.462 0.00 0.00 0.00 2.57
77 78 7.308951 CCCTACGTAACTTTCCAAAACATCAAT 60.309 37.037 0.00 0.00 0.00 2.57
78 79 7.749126 CCTACGTAACTTTCCAAAACATCAATC 59.251 37.037 0.00 0.00 0.00 2.67
79 80 7.033530 ACGTAACTTTCCAAAACATCAATCA 57.966 32.000 0.00 0.00 0.00 2.57
80 81 7.484975 ACGTAACTTTCCAAAACATCAATCAA 58.515 30.769 0.00 0.00 0.00 2.57
81 82 7.976734 ACGTAACTTTCCAAAACATCAATCAAA 59.023 29.630 0.00 0.00 0.00 2.69
82 83 8.265998 CGTAACTTTCCAAAACATCAATCAAAC 58.734 33.333 0.00 0.00 0.00 2.93
83 84 9.313118 GTAACTTTCCAAAACATCAATCAAACT 57.687 29.630 0.00 0.00 0.00 2.66
85 86 8.871686 ACTTTCCAAAACATCAATCAAACTAC 57.128 30.769 0.00 0.00 0.00 2.73
86 87 7.926018 ACTTTCCAAAACATCAATCAAACTACC 59.074 33.333 0.00 0.00 0.00 3.18
87 88 6.007936 TCCAAAACATCAATCAAACTACCG 57.992 37.500 0.00 0.00 0.00 4.02
88 89 4.621034 CCAAAACATCAATCAAACTACCGC 59.379 41.667 0.00 0.00 0.00 5.68
89 90 4.434713 AAACATCAATCAAACTACCGCC 57.565 40.909 0.00 0.00 0.00 6.13
90 91 2.365582 ACATCAATCAAACTACCGCCC 58.634 47.619 0.00 0.00 0.00 6.13
91 92 1.676006 CATCAATCAAACTACCGCCCC 59.324 52.381 0.00 0.00 0.00 5.80
92 93 0.034863 TCAATCAAACTACCGCCCCC 60.035 55.000 0.00 0.00 0.00 5.40
110 111 1.839894 CCTGATTCTAGGGTGGGCC 59.160 63.158 0.00 0.00 34.06 5.80
126 127 2.338257 CCCGTGCGGCAAACAAAT 59.662 55.556 3.23 0.00 0.00 2.32
127 128 1.581954 CCCGTGCGGCAAACAAATA 59.418 52.632 3.23 0.00 0.00 1.40
128 129 0.731174 CCCGTGCGGCAAACAAATAC 60.731 55.000 3.23 0.00 0.00 1.89
129 130 0.039978 CCGTGCGGCAAACAAATACA 60.040 50.000 3.23 0.00 0.00 2.29
130 131 1.600663 CCGTGCGGCAAACAAATACAA 60.601 47.619 3.23 0.00 0.00 2.41
131 132 2.120232 CGTGCGGCAAACAAATACAAA 58.880 42.857 3.23 0.00 0.00 2.83
132 133 2.728839 CGTGCGGCAAACAAATACAAAT 59.271 40.909 3.23 0.00 0.00 2.32
133 134 3.181545 CGTGCGGCAAACAAATACAAATC 60.182 43.478 3.23 0.00 0.00 2.17
134 135 3.738282 GTGCGGCAAACAAATACAAATCA 59.262 39.130 3.23 0.00 0.00 2.57
135 136 4.210120 GTGCGGCAAACAAATACAAATCAA 59.790 37.500 3.23 0.00 0.00 2.57
136 137 4.811024 TGCGGCAAACAAATACAAATCAAA 59.189 33.333 0.00 0.00 0.00 2.69
137 138 5.294306 TGCGGCAAACAAATACAAATCAAAA 59.706 32.000 0.00 0.00 0.00 2.44
138 139 5.845433 GCGGCAAACAAATACAAATCAAAAG 59.155 36.000 0.00 0.00 0.00 2.27
139 140 5.845433 CGGCAAACAAATACAAATCAAAAGC 59.155 36.000 0.00 0.00 0.00 3.51
140 141 6.292811 CGGCAAACAAATACAAATCAAAAGCT 60.293 34.615 0.00 0.00 0.00 3.74
141 142 6.852345 GGCAAACAAATACAAATCAAAAGCTG 59.148 34.615 0.00 0.00 0.00 4.24
142 143 6.357766 GCAAACAAATACAAATCAAAAGCTGC 59.642 34.615 0.00 0.00 0.00 5.25
143 144 6.544038 AACAAATACAAATCAAAAGCTGCC 57.456 33.333 0.00 0.00 0.00 4.85
144 145 5.609423 ACAAATACAAATCAAAAGCTGCCA 58.391 33.333 0.00 0.00 0.00 4.92
145 146 5.697633 ACAAATACAAATCAAAAGCTGCCAG 59.302 36.000 0.00 0.00 0.00 4.85
146 147 5.726980 AATACAAATCAAAAGCTGCCAGA 57.273 34.783 0.00 0.00 0.00 3.86
147 148 5.927281 ATACAAATCAAAAGCTGCCAGAT 57.073 34.783 0.00 0.00 0.00 2.90
148 149 4.184079 ACAAATCAAAAGCTGCCAGATC 57.816 40.909 0.00 0.00 0.00 2.75
149 150 3.575256 ACAAATCAAAAGCTGCCAGATCA 59.425 39.130 0.00 0.00 0.00 2.92
150 151 4.174009 CAAATCAAAAGCTGCCAGATCAG 58.826 43.478 0.00 0.00 37.15 2.90
159 160 2.283298 CTGCCAGATCAGCAATTACGT 58.717 47.619 11.11 0.00 40.35 3.57
160 161 2.279741 TGCCAGATCAGCAATTACGTC 58.720 47.619 7.89 0.00 37.28 4.34
161 162 2.279741 GCCAGATCAGCAATTACGTCA 58.720 47.619 0.00 0.00 0.00 4.35
162 163 2.677836 GCCAGATCAGCAATTACGTCAA 59.322 45.455 0.00 0.00 0.00 3.18
163 164 3.242543 GCCAGATCAGCAATTACGTCAAG 60.243 47.826 0.00 0.00 0.00 3.02
164 165 4.183865 CCAGATCAGCAATTACGTCAAGA 58.816 43.478 0.00 0.00 0.00 3.02
165 166 4.631377 CCAGATCAGCAATTACGTCAAGAA 59.369 41.667 0.00 0.00 0.00 2.52
166 167 5.446473 CCAGATCAGCAATTACGTCAAGAAC 60.446 44.000 0.00 0.00 0.00 3.01
186 187 4.900635 ACGTAATAATCCGTTCGTAGGT 57.099 40.909 0.00 0.00 32.50 3.08
187 188 4.601019 ACGTAATAATCCGTTCGTAGGTG 58.399 43.478 0.00 0.00 32.50 4.00
188 189 4.096382 ACGTAATAATCCGTTCGTAGGTGT 59.904 41.667 0.00 0.00 32.50 4.16
189 190 5.295787 ACGTAATAATCCGTTCGTAGGTGTA 59.704 40.000 0.00 0.00 32.50 2.90
190 191 5.848036 CGTAATAATCCGTTCGTAGGTGTAG 59.152 44.000 0.00 0.00 0.00 2.74
191 192 2.573941 AATCCGTTCGTAGGTGTAGC 57.426 50.000 0.00 0.00 0.00 3.58
192 193 1.466856 ATCCGTTCGTAGGTGTAGCA 58.533 50.000 0.00 0.00 0.00 3.49
193 194 1.246649 TCCGTTCGTAGGTGTAGCAA 58.753 50.000 0.00 0.00 0.00 3.91
194 195 1.612950 TCCGTTCGTAGGTGTAGCAAA 59.387 47.619 0.00 0.00 0.00 3.68
195 196 1.990563 CCGTTCGTAGGTGTAGCAAAG 59.009 52.381 0.00 0.00 0.00 2.77
196 197 1.389106 CGTTCGTAGGTGTAGCAAAGC 59.611 52.381 0.00 0.00 0.00 3.51
197 198 1.730612 GTTCGTAGGTGTAGCAAAGCC 59.269 52.381 0.00 0.00 0.00 4.35
198 199 0.248289 TCGTAGGTGTAGCAAAGCCC 59.752 55.000 0.00 0.00 0.00 5.19
208 209 0.603439 AGCAAAGCCCGCAAAATTGG 60.603 50.000 0.00 0.00 0.00 3.16
223 224 3.931907 AATTGGCATCAGCTACACCTA 57.068 42.857 0.00 0.00 41.70 3.08
359 360 2.211806 CACGTTTCCGTCCCTACAAAA 58.788 47.619 0.00 0.00 46.28 2.44
360 361 2.613133 CACGTTTCCGTCCCTACAAAAA 59.387 45.455 0.00 0.00 46.28 1.94
385 386 2.128035 GTCCTCGACAATATCCGCAAG 58.872 52.381 0.00 0.00 32.09 4.01
415 416 2.354103 CCTCGACAAGAAAGCTGGATCA 60.354 50.000 0.00 0.00 0.00 2.92
423 424 3.871485 AGAAAGCTGGATCAAGCACTAG 58.129 45.455 24.11 0.00 46.08 2.57
447 448 2.446341 CGAGAAACGCAAGGTCTCC 58.554 57.895 0.00 0.00 44.91 3.71
656 713 0.097499 CGTCGTTGACATGCATGCAT 59.903 50.000 27.46 27.46 37.08 3.96
779 895 2.357517 CACACGGGCCACAGAGTC 60.358 66.667 4.39 0.00 0.00 3.36
808 924 0.390340 TCAGCTGCATTCCTCGTGAC 60.390 55.000 9.47 0.00 0.00 3.67
840 959 4.623002 GAACTCTCCGTCTGATATTTCCC 58.377 47.826 0.00 0.00 0.00 3.97
953 1085 3.490759 GACGCAGCCACATCACCG 61.491 66.667 0.00 0.00 0.00 4.94
961 1093 4.033776 CACATCACCGCCACCCCT 62.034 66.667 0.00 0.00 0.00 4.79
979 1111 1.134068 CCTTACAAAGCCTCCTAGCCC 60.134 57.143 0.00 0.00 0.00 5.19
998 1130 0.582482 CGATCTCGAGGTAGGACGTG 59.418 60.000 13.56 0.00 43.02 4.49
1328 1483 2.749682 AGCCGTGCTCATGAACCA 59.250 55.556 0.00 0.00 30.62 3.67
1329 1484 1.300963 AGCCGTGCTCATGAACCAT 59.699 52.632 0.00 0.00 30.62 3.55
1330 1485 1.028330 AGCCGTGCTCATGAACCATG 61.028 55.000 0.00 2.72 42.60 3.66
1378 1540 4.361420 CTGAGAGATGATGTGCTACTGTG 58.639 47.826 0.00 0.00 0.00 3.66
1564 1733 2.105649 TGGTGGCTGATGTGTGAAACTA 59.894 45.455 0.00 0.00 38.04 2.24
1565 1734 2.744202 GGTGGCTGATGTGTGAAACTAG 59.256 50.000 0.00 0.00 38.04 2.57
1566 1735 3.403038 GTGGCTGATGTGTGAAACTAGT 58.597 45.455 0.00 0.00 38.04 2.57
1567 1736 3.815401 GTGGCTGATGTGTGAAACTAGTT 59.185 43.478 1.12 1.12 38.04 2.24
1571 1740 7.333423 GTGGCTGATGTGTGAAACTAGTTATTA 59.667 37.037 8.92 0.00 38.04 0.98
1572 1741 7.880713 TGGCTGATGTGTGAAACTAGTTATTAA 59.119 33.333 8.92 0.00 38.04 1.40
1634 2492 7.551974 ACAATTCCAACAAATTTCACATTGTCA 59.448 29.630 0.00 0.00 38.75 3.58
1649 2507 4.889409 ACATTGTCAAATATTCTCCGCCAT 59.111 37.500 0.00 0.00 0.00 4.40
1653 2511 4.576053 TGTCAAATATTCTCCGCCATCTTG 59.424 41.667 0.00 0.00 0.00 3.02
1674 2532 2.830772 ATTCGTCCATGCATCAAACG 57.169 45.000 15.38 15.38 34.80 3.60
1675 2533 0.801872 TTCGTCCATGCATCAAACGG 59.198 50.000 19.23 8.92 34.30 4.44
1676 2534 0.036858 TCGTCCATGCATCAAACGGA 60.037 50.000 19.23 10.87 34.30 4.69
1677 2535 0.096976 CGTCCATGCATCAAACGGAC 59.903 55.000 18.70 18.70 42.25 4.79
1678 2536 0.451783 GTCCATGCATCAAACGGACC 59.548 55.000 18.15 4.94 40.25 4.46
1679 2537 0.327924 TCCATGCATCAAACGGACCT 59.672 50.000 0.00 0.00 0.00 3.85
1680 2538 0.734889 CCATGCATCAAACGGACCTC 59.265 55.000 0.00 0.00 0.00 3.85
1708 2566 3.323979 ACAACGGACTTGAGTTCATACCT 59.676 43.478 0.00 0.00 33.59 3.08
1727 2585 4.605183 ACCTTGAGTACTGATGCTACTCT 58.395 43.478 0.00 0.00 40.54 3.24
1732 2590 5.689835 TGAGTACTGATGCTACTCTCAGAT 58.310 41.667 0.00 0.00 41.13 2.90
1744 2602 2.894126 ACTCTCAGATTCCACGTGACTT 59.106 45.455 19.30 0.00 0.00 3.01
1855 4637 1.005975 GCAACGCTATCGCACACTAAG 60.006 52.381 0.00 0.00 39.84 2.18
1865 4647 1.657594 CGCACACTAAGCACTGATCTG 59.342 52.381 0.00 0.00 0.00 2.90
1868 4650 1.625315 ACACTAAGCACTGATCTGCCA 59.375 47.619 3.46 0.00 37.96 4.92
1875 4657 2.157738 GCACTGATCTGCCAGAAAGTT 58.842 47.619 9.93 0.00 37.59 2.66
1878 4660 4.397417 GCACTGATCTGCCAGAAAGTTAAT 59.603 41.667 9.93 0.00 37.59 1.40
1883 4665 7.885399 ACTGATCTGCCAGAAAGTTAATAACTT 59.115 33.333 12.24 12.24 43.73 2.66
2009 4791 6.126863 TCCTGAGTCAAATTCTTGGTACAT 57.873 37.500 0.00 0.00 39.30 2.29
2011 4793 5.939883 CCTGAGTCAAATTCTTGGTACATGA 59.060 40.000 0.00 0.00 40.83 3.07
2014 4796 6.998074 TGAGTCAAATTCTTGGTACATGACTT 59.002 34.615 0.00 0.00 46.81 3.01
2027 4809 7.952671 TGGTACATGACTTCAGGATATTACTC 58.047 38.462 0.00 0.00 0.00 2.59
2083 4865 2.787473 TCATGCTTTTCCCAGATCGT 57.213 45.000 0.00 0.00 0.00 3.73
2092 4874 0.554305 TCCCAGATCGTGGCCTAGTA 59.446 55.000 3.32 0.00 46.45 1.82
2127 4909 4.357097 ACCTTTCCTTCCCTTAGAAACCAT 59.643 41.667 0.00 0.00 32.88 3.55
2130 4912 3.537337 TCCTTCCCTTAGAAACCATGGA 58.463 45.455 21.47 0.00 32.88 3.41
2147 4929 3.576078 TGGATGTTGAGAGTGTGGTTT 57.424 42.857 0.00 0.00 0.00 3.27
2209 4994 3.055385 TCCTCTTATGGTTGGGAGTTTCG 60.055 47.826 0.00 0.00 0.00 3.46
2249 5034 4.082733 TCTCATTCCTCACAGTTAGTCGTG 60.083 45.833 0.00 0.00 34.34 4.35
2250 5035 3.572682 TCATTCCTCACAGTTAGTCGTGT 59.427 43.478 0.00 0.00 34.66 4.49
2260 5045 7.637229 TCACAGTTAGTCGTGTAGAATATAGC 58.363 38.462 0.00 0.00 34.66 2.97
2265 5050 9.733219 AGTTAGTCGTGTAGAATATAGCTTTTC 57.267 33.333 0.00 0.00 0.00 2.29
2266 5051 9.733219 GTTAGTCGTGTAGAATATAGCTTTTCT 57.267 33.333 0.00 1.22 36.26 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.685628 AGGTGTAGCATTTTCGCAATTTTG 59.314 37.500 0.00 0.00 0.00 2.44
10 11 4.881920 AGGTGTAGCATTTTCGCAATTTT 58.118 34.783 0.00 0.00 0.00 1.82
11 12 4.519540 AGGTGTAGCATTTTCGCAATTT 57.480 36.364 0.00 0.00 0.00 1.82
12 13 4.436852 CGTAGGTGTAGCATTTTCGCAATT 60.437 41.667 0.00 0.00 0.00 2.32
13 14 3.063452 CGTAGGTGTAGCATTTTCGCAAT 59.937 43.478 0.00 0.00 0.00 3.56
14 15 2.413796 CGTAGGTGTAGCATTTTCGCAA 59.586 45.455 0.00 0.00 0.00 4.85
15 16 1.996898 CGTAGGTGTAGCATTTTCGCA 59.003 47.619 0.00 0.00 0.00 5.10
16 17 2.264813 TCGTAGGTGTAGCATTTTCGC 58.735 47.619 0.00 0.00 0.00 4.70
17 18 4.171005 TCTTCGTAGGTGTAGCATTTTCG 58.829 43.478 0.00 0.00 0.00 3.46
18 19 4.567159 CCTCTTCGTAGGTGTAGCATTTTC 59.433 45.833 0.00 0.00 31.46 2.29
19 20 4.504858 CCTCTTCGTAGGTGTAGCATTTT 58.495 43.478 0.00 0.00 31.46 1.82
20 21 4.124851 CCTCTTCGTAGGTGTAGCATTT 57.875 45.455 0.00 0.00 31.46 2.32
21 22 3.802948 CCTCTTCGTAGGTGTAGCATT 57.197 47.619 0.00 0.00 31.46 3.56
30 31 1.153823 CGTGGCACCTCTTCGTAGG 60.154 63.158 12.86 0.00 42.82 3.18
31 32 0.806868 TACGTGGCACCTCTTCGTAG 59.193 55.000 12.86 0.00 36.24 3.51
32 33 0.523072 GTACGTGGCACCTCTTCGTA 59.477 55.000 12.86 6.87 36.24 3.43
33 34 1.288127 GTACGTGGCACCTCTTCGT 59.712 57.895 12.86 7.95 38.30 3.85
34 35 1.445582 GGTACGTGGCACCTCTTCG 60.446 63.158 12.86 1.19 32.98 3.79
35 36 1.079336 GGGTACGTGGCACCTCTTC 60.079 63.158 12.86 0.00 36.25 2.87
36 37 0.251922 TAGGGTACGTGGCACCTCTT 60.252 55.000 12.86 0.00 36.25 2.85
37 38 0.969409 GTAGGGTACGTGGCACCTCT 60.969 60.000 12.86 6.01 36.25 3.69
38 39 1.514553 GTAGGGTACGTGGCACCTC 59.485 63.158 12.86 0.00 36.25 3.85
39 40 2.345760 CGTAGGGTACGTGGCACCT 61.346 63.158 12.86 5.37 46.41 4.00
40 41 2.182537 CGTAGGGTACGTGGCACC 59.817 66.667 12.86 0.00 46.41 5.01
48 49 5.757808 TGTTTTGGAAAGTTACGTAGGGTAC 59.242 40.000 0.00 0.00 0.00 3.34
49 50 5.923204 TGTTTTGGAAAGTTACGTAGGGTA 58.077 37.500 0.00 0.00 0.00 3.69
50 51 4.779696 TGTTTTGGAAAGTTACGTAGGGT 58.220 39.130 0.00 0.00 0.00 4.34
51 52 5.470777 TGATGTTTTGGAAAGTTACGTAGGG 59.529 40.000 0.00 0.00 0.00 3.53
52 53 6.548441 TGATGTTTTGGAAAGTTACGTAGG 57.452 37.500 0.00 0.00 0.00 3.18
53 54 8.286800 TGATTGATGTTTTGGAAAGTTACGTAG 58.713 33.333 0.00 0.00 0.00 3.51
54 55 8.155821 TGATTGATGTTTTGGAAAGTTACGTA 57.844 30.769 0.00 0.00 0.00 3.57
55 56 7.033530 TGATTGATGTTTTGGAAAGTTACGT 57.966 32.000 0.00 0.00 0.00 3.57
56 57 7.922505 TTGATTGATGTTTTGGAAAGTTACG 57.077 32.000 0.00 0.00 0.00 3.18
57 58 9.313118 AGTTTGATTGATGTTTTGGAAAGTTAC 57.687 29.630 0.00 0.00 0.00 2.50
59 60 9.313118 GTAGTTTGATTGATGTTTTGGAAAGTT 57.687 29.630 0.00 0.00 0.00 2.66
60 61 7.926018 GGTAGTTTGATTGATGTTTTGGAAAGT 59.074 33.333 0.00 0.00 0.00 2.66
61 62 7.114811 CGGTAGTTTGATTGATGTTTTGGAAAG 59.885 37.037 0.00 0.00 0.00 2.62
62 63 6.920758 CGGTAGTTTGATTGATGTTTTGGAAA 59.079 34.615 0.00 0.00 0.00 3.13
63 64 6.442952 CGGTAGTTTGATTGATGTTTTGGAA 58.557 36.000 0.00 0.00 0.00 3.53
64 65 5.563867 GCGGTAGTTTGATTGATGTTTTGGA 60.564 40.000 0.00 0.00 0.00 3.53
65 66 4.621034 GCGGTAGTTTGATTGATGTTTTGG 59.379 41.667 0.00 0.00 0.00 3.28
66 67 4.621034 GGCGGTAGTTTGATTGATGTTTTG 59.379 41.667 0.00 0.00 0.00 2.44
67 68 4.321675 GGGCGGTAGTTTGATTGATGTTTT 60.322 41.667 0.00 0.00 0.00 2.43
68 69 3.192633 GGGCGGTAGTTTGATTGATGTTT 59.807 43.478 0.00 0.00 0.00 2.83
69 70 2.752903 GGGCGGTAGTTTGATTGATGTT 59.247 45.455 0.00 0.00 0.00 2.71
70 71 2.365582 GGGCGGTAGTTTGATTGATGT 58.634 47.619 0.00 0.00 0.00 3.06
71 72 1.676006 GGGGCGGTAGTTTGATTGATG 59.324 52.381 0.00 0.00 0.00 3.07
72 73 1.409661 GGGGGCGGTAGTTTGATTGAT 60.410 52.381 0.00 0.00 0.00 2.57
73 74 0.034863 GGGGGCGGTAGTTTGATTGA 60.035 55.000 0.00 0.00 0.00 2.57
74 75 2.489040 GGGGGCGGTAGTTTGATTG 58.511 57.895 0.00 0.00 0.00 2.67
92 93 1.839894 GGCCCACCCTAGAATCAGG 59.160 63.158 0.00 0.00 35.26 3.86
109 110 0.731174 GTATTTGTTTGCCGCACGGG 60.731 55.000 11.65 0.00 39.58 5.28
110 111 0.039978 TGTATTTGTTTGCCGCACGG 60.040 50.000 4.30 4.30 38.57 4.94
111 112 1.759994 TTGTATTTGTTTGCCGCACG 58.240 45.000 0.00 0.00 0.00 5.34
112 113 3.738282 TGATTTGTATTTGTTTGCCGCAC 59.262 39.130 0.00 0.00 0.00 5.34
113 114 3.982475 TGATTTGTATTTGTTTGCCGCA 58.018 36.364 0.00 0.00 0.00 5.69
114 115 4.981389 TTGATTTGTATTTGTTTGCCGC 57.019 36.364 0.00 0.00 0.00 6.53
115 116 5.845433 GCTTTTGATTTGTATTTGTTTGCCG 59.155 36.000 0.00 0.00 0.00 5.69
116 117 6.852345 CAGCTTTTGATTTGTATTTGTTTGCC 59.148 34.615 0.00 0.00 0.00 4.52
117 118 6.357766 GCAGCTTTTGATTTGTATTTGTTTGC 59.642 34.615 0.00 0.00 0.00 3.68
118 119 6.852345 GGCAGCTTTTGATTTGTATTTGTTTG 59.148 34.615 0.00 0.00 0.00 2.93
119 120 6.541641 TGGCAGCTTTTGATTTGTATTTGTTT 59.458 30.769 0.00 0.00 0.00 2.83
120 121 6.054295 TGGCAGCTTTTGATTTGTATTTGTT 58.946 32.000 0.00 0.00 0.00 2.83
121 122 5.609423 TGGCAGCTTTTGATTTGTATTTGT 58.391 33.333 0.00 0.00 0.00 2.83
122 123 5.927689 TCTGGCAGCTTTTGATTTGTATTTG 59.072 36.000 10.34 0.00 0.00 2.32
123 124 6.100404 TCTGGCAGCTTTTGATTTGTATTT 57.900 33.333 10.34 0.00 0.00 1.40
124 125 5.726980 TCTGGCAGCTTTTGATTTGTATT 57.273 34.783 10.34 0.00 0.00 1.89
125 126 5.419788 TGATCTGGCAGCTTTTGATTTGTAT 59.580 36.000 10.34 0.00 0.00 2.29
126 127 4.766373 TGATCTGGCAGCTTTTGATTTGTA 59.234 37.500 10.34 0.00 0.00 2.41
127 128 3.575256 TGATCTGGCAGCTTTTGATTTGT 59.425 39.130 10.34 0.00 0.00 2.83
128 129 4.174009 CTGATCTGGCAGCTTTTGATTTG 58.826 43.478 10.34 0.00 0.00 2.32
129 130 4.451629 CTGATCTGGCAGCTTTTGATTT 57.548 40.909 10.34 0.00 0.00 2.17
139 140 2.283298 ACGTAATTGCTGATCTGGCAG 58.717 47.619 8.58 8.58 40.90 4.85
140 141 2.279741 GACGTAATTGCTGATCTGGCA 58.720 47.619 9.27 9.27 37.97 4.92
141 142 2.279741 TGACGTAATTGCTGATCTGGC 58.720 47.619 1.46 3.25 0.00 4.85
142 143 4.183865 TCTTGACGTAATTGCTGATCTGG 58.816 43.478 1.46 0.00 0.00 3.86
143 144 5.554636 GTTCTTGACGTAATTGCTGATCTG 58.445 41.667 0.00 0.00 0.00 2.90
144 145 4.327357 CGTTCTTGACGTAATTGCTGATCT 59.673 41.667 0.00 0.00 46.49 2.75
145 146 4.569029 CGTTCTTGACGTAATTGCTGATC 58.431 43.478 0.00 0.00 46.49 2.92
146 147 4.584029 CGTTCTTGACGTAATTGCTGAT 57.416 40.909 0.00 0.00 46.49 2.90
165 166 4.096382 ACACCTACGAACGGATTATTACGT 59.904 41.667 0.00 0.00 46.48 3.57
166 167 4.601019 ACACCTACGAACGGATTATTACG 58.399 43.478 0.00 0.00 0.00 3.18
167 168 5.626955 GCTACACCTACGAACGGATTATTAC 59.373 44.000 0.00 0.00 0.00 1.89
168 169 5.299028 TGCTACACCTACGAACGGATTATTA 59.701 40.000 0.00 0.00 0.00 0.98
169 170 4.098349 TGCTACACCTACGAACGGATTATT 59.902 41.667 0.00 0.00 0.00 1.40
170 171 3.633525 TGCTACACCTACGAACGGATTAT 59.366 43.478 0.00 0.00 0.00 1.28
171 172 3.016031 TGCTACACCTACGAACGGATTA 58.984 45.455 0.00 0.00 0.00 1.75
172 173 1.820519 TGCTACACCTACGAACGGATT 59.179 47.619 0.00 0.00 0.00 3.01
173 174 1.466856 TGCTACACCTACGAACGGAT 58.533 50.000 0.00 0.00 0.00 4.18
174 175 1.246649 TTGCTACACCTACGAACGGA 58.753 50.000 0.00 0.00 0.00 4.69
175 176 1.990563 CTTTGCTACACCTACGAACGG 59.009 52.381 0.00 0.00 0.00 4.44
176 177 1.389106 GCTTTGCTACACCTACGAACG 59.611 52.381 0.00 0.00 0.00 3.95
177 178 1.730612 GGCTTTGCTACACCTACGAAC 59.269 52.381 0.00 0.00 0.00 3.95
178 179 1.338389 GGGCTTTGCTACACCTACGAA 60.338 52.381 0.00 0.00 0.00 3.85
179 180 0.248289 GGGCTTTGCTACACCTACGA 59.752 55.000 0.00 0.00 0.00 3.43
180 181 1.082117 CGGGCTTTGCTACACCTACG 61.082 60.000 0.00 0.00 0.00 3.51
181 182 1.366854 GCGGGCTTTGCTACACCTAC 61.367 60.000 0.00 0.00 0.00 3.18
182 183 1.078708 GCGGGCTTTGCTACACCTA 60.079 57.895 0.00 0.00 0.00 3.08
183 184 2.359975 GCGGGCTTTGCTACACCT 60.360 61.111 0.00 0.00 0.00 4.00
184 185 1.801309 TTTGCGGGCTTTGCTACACC 61.801 55.000 0.00 0.00 0.00 4.16
185 186 0.031449 TTTTGCGGGCTTTGCTACAC 59.969 50.000 0.00 0.00 0.00 2.90
186 187 0.965439 ATTTTGCGGGCTTTGCTACA 59.035 45.000 0.00 0.00 0.00 2.74
187 188 1.726248 CAATTTTGCGGGCTTTGCTAC 59.274 47.619 0.00 0.00 0.00 3.58
188 189 1.337635 CCAATTTTGCGGGCTTTGCTA 60.338 47.619 0.00 0.00 0.00 3.49
189 190 0.603439 CCAATTTTGCGGGCTTTGCT 60.603 50.000 0.00 0.00 0.00 3.91
190 191 1.868306 CCAATTTTGCGGGCTTTGC 59.132 52.632 0.00 0.00 0.00 3.68
191 192 1.868306 GCCAATTTTGCGGGCTTTG 59.132 52.632 0.00 0.00 44.32 2.77
192 193 4.377370 GCCAATTTTGCGGGCTTT 57.623 50.000 0.00 0.00 44.32 3.51
196 197 1.085501 GCTGATGCCAATTTTGCGGG 61.086 55.000 0.00 0.00 0.00 6.13
197 198 0.108520 AGCTGATGCCAATTTTGCGG 60.109 50.000 0.00 0.00 40.80 5.69
198 199 2.187707 GTAGCTGATGCCAATTTTGCG 58.812 47.619 0.00 0.00 40.80 4.85
208 209 3.134458 GGATTGTAGGTGTAGCTGATGC 58.866 50.000 0.00 0.00 40.05 3.91
223 224 1.139058 GGCTCGTATCAGGTGGATTGT 59.861 52.381 0.00 0.00 37.44 2.71
359 360 3.068307 CGGATATTGTCGAGGACCTCTTT 59.932 47.826 19.39 2.41 0.00 2.52
360 361 2.623889 CGGATATTGTCGAGGACCTCTT 59.376 50.000 19.39 2.08 0.00 2.85
361 362 2.231529 CGGATATTGTCGAGGACCTCT 58.768 52.381 19.39 2.69 0.00 3.69
362 363 1.336056 GCGGATATTGTCGAGGACCTC 60.336 57.143 11.87 11.87 0.00 3.85
363 364 0.674534 GCGGATATTGTCGAGGACCT 59.325 55.000 0.00 0.00 0.00 3.85
364 365 0.387929 TGCGGATATTGTCGAGGACC 59.612 55.000 0.00 0.00 0.00 4.46
385 386 3.662247 TTCTTGTCGAGGACCTCTTTC 57.338 47.619 19.39 9.65 0.00 2.62
415 416 1.195115 TTCTCGCCCATCTAGTGCTT 58.805 50.000 0.00 0.00 0.00 3.91
656 713 2.356553 GCAGTTGACACCCGCGTA 60.357 61.111 4.92 0.00 0.00 4.42
720 796 1.087202 TGTGCCAGTGTGTGTTCGAC 61.087 55.000 0.00 0.00 0.00 4.20
808 924 0.865769 CGGAGAGTTCGGTTGGTTTG 59.134 55.000 0.00 0.00 0.00 2.93
953 1085 0.965866 GAGGCTTTGTAAGGGGTGGC 60.966 60.000 0.00 0.00 0.00 5.01
959 1091 1.134068 GGGCTAGGAGGCTTTGTAAGG 60.134 57.143 0.00 0.00 41.09 2.69
961 1093 0.539986 CGGGCTAGGAGGCTTTGTAA 59.460 55.000 0.00 0.00 41.09 2.41
979 1111 0.582482 CACGTCCTACCTCGAGATCG 59.418 60.000 15.71 10.94 41.45 3.69
998 1130 2.182842 GCCACCATCGTCTCCATGC 61.183 63.158 0.00 0.00 0.00 4.06
1326 1481 5.523552 TCGTAAGTTAGTCATGAATGCATGG 59.476 40.000 13.98 0.00 44.84 3.66
1327 1482 6.588348 TCGTAAGTTAGTCATGAATGCATG 57.412 37.500 7.43 7.43 45.52 4.06
1328 1483 6.203530 CCATCGTAAGTTAGTCATGAATGCAT 59.796 38.462 5.80 0.00 39.48 3.96
1329 1484 5.523552 CCATCGTAAGTTAGTCATGAATGCA 59.476 40.000 5.80 0.00 39.48 3.96
1330 1485 5.753438 TCCATCGTAAGTTAGTCATGAATGC 59.247 40.000 5.80 0.00 39.48 3.56
1378 1540 8.343366 TCGATCTCTGCATATACGGATAATAAC 58.657 37.037 0.00 0.00 0.00 1.89
1478 1645 9.108284 CCAAATTATCATACAGACACACACATA 57.892 33.333 0.00 0.00 0.00 2.29
1479 1646 7.828717 TCCAAATTATCATACAGACACACACAT 59.171 33.333 0.00 0.00 0.00 3.21
1480 1647 7.119116 GTCCAAATTATCATACAGACACACACA 59.881 37.037 0.00 0.00 0.00 3.72
1481 1648 7.464358 GTCCAAATTATCATACAGACACACAC 58.536 38.462 0.00 0.00 0.00 3.82
1482 1649 6.312672 CGTCCAAATTATCATACAGACACACA 59.687 38.462 0.00 0.00 0.00 3.72
1483 1650 6.705782 CGTCCAAATTATCATACAGACACAC 58.294 40.000 0.00 0.00 0.00 3.82
1496 1664 5.560966 AAAGATCAACGCGTCCAAATTAT 57.439 34.783 14.44 0.00 0.00 1.28
1611 2465 8.503458 TTTGACAATGTGAAATTTGTTGGAAT 57.497 26.923 0.00 0.00 36.25 3.01
1612 2466 7.912056 TTTGACAATGTGAAATTTGTTGGAA 57.088 28.000 0.00 0.00 36.25 3.53
1634 2492 6.293626 CGAATTCAAGATGGCGGAGAATATTT 60.294 38.462 6.22 0.00 0.00 1.40
1649 2507 3.608796 TGATGCATGGACGAATTCAAGA 58.391 40.909 2.46 0.00 0.00 3.02
1653 2511 3.100817 CGTTTGATGCATGGACGAATTC 58.899 45.455 16.68 0.00 35.90 2.17
1674 2532 0.899720 TCCGTTGTACATGGAGGTCC 59.100 55.000 12.12 0.00 35.38 4.46
1675 2533 1.549170 AGTCCGTTGTACATGGAGGTC 59.451 52.381 15.59 6.62 41.74 3.85
1676 2534 1.640917 AGTCCGTTGTACATGGAGGT 58.359 50.000 15.59 5.84 41.74 3.85
1677 2535 2.028476 TCAAGTCCGTTGTACATGGAGG 60.028 50.000 15.59 8.41 41.74 4.30
1678 2536 3.254060 CTCAAGTCCGTTGTACATGGAG 58.746 50.000 15.59 6.78 41.74 3.86
1679 2537 2.631062 ACTCAAGTCCGTTGTACATGGA 59.369 45.455 12.12 12.12 38.38 3.41
1680 2538 3.040147 ACTCAAGTCCGTTGTACATGG 57.960 47.619 8.08 8.08 37.43 3.66
1708 2566 5.501156 TCTGAGAGTAGCATCAGTACTCAA 58.499 41.667 11.39 0.98 46.08 3.02
1727 2585 3.511540 AGATGAAGTCACGTGGAATCTGA 59.488 43.478 17.00 0.00 0.00 3.27
1732 2590 1.069978 TGCAGATGAAGTCACGTGGAA 59.930 47.619 17.00 0.00 0.00 3.53
1744 2602 4.769488 AGAAGAGACTACAGTTGCAGATGA 59.231 41.667 7.19 0.00 0.00 2.92
1799 2657 8.017946 GGTGCAAACTAGATTAAAGAGAAACTG 58.982 37.037 0.00 0.00 0.00 3.16
1846 4628 1.396301 GCAGATCAGTGCTTAGTGTGC 59.604 52.381 0.00 0.00 40.54 4.57
1855 4637 1.818642 ACTTTCTGGCAGATCAGTGC 58.181 50.000 22.57 0.00 43.19 4.40
1883 4665 8.812972 ACTCTTATGTGTGACACCTAATAAGAA 58.187 33.333 24.63 15.28 36.92 2.52
1973 4755 2.423892 GACTCAGGATGACTACGAGCAA 59.576 50.000 0.00 0.00 42.56 3.91
2009 4791 6.667848 TGTCCTTGAGTAATATCCTGAAGTCA 59.332 38.462 2.47 0.00 0.00 3.41
2011 4793 6.405953 CGTGTCCTTGAGTAATATCCTGAAGT 60.406 42.308 2.47 0.00 0.00 3.01
2014 4796 4.341235 CCGTGTCCTTGAGTAATATCCTGA 59.659 45.833 0.00 0.00 0.00 3.86
2027 4809 1.877443 CAAGGTAAACCCGTGTCCTTG 59.123 52.381 7.66 7.66 45.47 3.61
2066 4848 1.755179 CCACGATCTGGGAAAAGCAT 58.245 50.000 0.00 0.00 36.18 3.79
2083 4865 8.658840 AAGGTTTTAATTCAAATACTAGGCCA 57.341 30.769 5.01 0.00 0.00 5.36
2092 4874 8.275187 AGGGAAGGAAAGGTTTTAATTCAAAT 57.725 30.769 0.00 0.00 0.00 2.32
2127 4909 3.476552 GAAACCACACTCTCAACATCCA 58.523 45.455 0.00 0.00 0.00 3.41
2130 4912 3.136443 TCTGGAAACCACACTCTCAACAT 59.864 43.478 0.00 0.00 0.00 2.71
2147 4929 0.690192 TCCGGAGCAAAATGTCTGGA 59.310 50.000 0.00 0.00 44.55 3.86
2209 4994 2.038557 TGAGAGGTGTTCCTTGCTTACC 59.961 50.000 0.00 0.00 45.24 2.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.