Multiple sequence alignment - TraesCS3A01G144900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G144900 chr3A 100.000 3066 0 0 1 3066 127355876 127352811 0.000000e+00 5662.0
1 TraesCS3A01G144900 chr3A 92.063 63 5 0 1 63 449125506 449125444 4.210000e-14 89.8
2 TraesCS3A01G144900 chr3A 93.333 60 4 0 1 60 597327163 597327104 4.210000e-14 89.8
3 TraesCS3A01G144900 chr3B 91.697 2782 121 55 58 2763 172702269 172705016 0.000000e+00 3757.0
4 TraesCS3A01G144900 chr3B 90.244 164 15 1 2903 3066 172724407 172724569 2.390000e-51 213.0
5 TraesCS3A01G144900 chr3B 90.446 157 6 2 2751 2898 172724094 172724250 6.710000e-47 198.0
6 TraesCS3A01G144900 chr3B 94.915 59 3 0 1 59 564175289 564175347 3.260000e-15 93.5
7 TraesCS3A01G144900 chr3D 92.573 2666 118 40 58 2693 120630553 120633168 0.000000e+00 3753.0
8 TraesCS3A01G144900 chr3D 92.174 115 6 3 2769 2880 120633200 120633314 3.160000e-35 159.0
9 TraesCS3A01G144900 chr3D 100.000 31 0 0 2658 2688 56712805 56712835 1.190000e-04 58.4
10 TraesCS3A01G144900 chr7A 95.161 62 3 0 1 62 675486187 675486126 7.000000e-17 99.0
11 TraesCS3A01G144900 chr6A 95.000 60 3 0 1 60 311855233 311855174 9.050000e-16 95.3
12 TraesCS3A01G144900 chr6A 92.063 63 4 1 5 67 610804453 610804514 1.510000e-13 87.9
13 TraesCS3A01G144900 chr5A 93.333 60 4 0 1 60 664554194 664554253 4.210000e-14 89.8
14 TraesCS3A01G144900 chr1A 93.220 59 4 0 1 59 341173254 341173312 1.510000e-13 87.9
15 TraesCS3A01G144900 chr2A 90.625 64 6 0 1 64 486472520 486472457 5.450000e-13 86.1
16 TraesCS3A01G144900 chr5B 88.636 44 3 2 2646 2688 440563732 440563774 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G144900 chr3A 127352811 127355876 3065 True 5662 5662 100.0000 1 3066 1 chr3A.!!$R1 3065
1 TraesCS3A01G144900 chr3B 172702269 172705016 2747 False 3757 3757 91.6970 58 2763 1 chr3B.!!$F1 2705
2 TraesCS3A01G144900 chr3D 120630553 120633314 2761 False 1956 3753 92.3735 58 2880 2 chr3D.!!$F2 2822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 423 0.037232 GGTACTGACCACTGACCAGC 60.037 60.0 0.0 0.0 46.12 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2202 0.172578 CTGCCATGCATGTTGGACAG 59.827 55.0 24.58 17.85 38.13 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.128554 ACGATCAAAGTTAAAGCACGTG 57.871 40.909 12.28 12.28 0.00 4.49
22 23 3.805422 ACGATCAAAGTTAAAGCACGTGA 59.195 39.130 22.23 0.00 0.00 4.35
23 24 4.271533 ACGATCAAAGTTAAAGCACGTGAA 59.728 37.500 22.23 0.62 0.00 3.18
24 25 5.049680 ACGATCAAAGTTAAAGCACGTGAAT 60.050 36.000 22.23 3.35 0.00 2.57
25 26 6.146510 ACGATCAAAGTTAAAGCACGTGAATA 59.853 34.615 22.23 5.48 0.00 1.75
26 27 7.012943 CGATCAAAGTTAAAGCACGTGAATAA 58.987 34.615 22.23 11.55 0.00 1.40
27 28 7.532546 CGATCAAAGTTAAAGCACGTGAATAAA 59.467 33.333 22.23 4.69 0.00 1.40
28 29 8.728088 ATCAAAGTTAAAGCACGTGAATAAAG 57.272 30.769 22.23 6.06 0.00 1.85
29 30 7.136119 TCAAAGTTAAAGCACGTGAATAAAGG 58.864 34.615 22.23 5.46 0.00 3.11
30 31 6.870971 AAGTTAAAGCACGTGAATAAAGGA 57.129 33.333 22.23 0.00 0.00 3.36
31 32 6.870971 AGTTAAAGCACGTGAATAAAGGAA 57.129 33.333 22.23 0.00 0.00 3.36
32 33 6.899114 AGTTAAAGCACGTGAATAAAGGAAG 58.101 36.000 22.23 0.00 0.00 3.46
33 34 3.831715 AAGCACGTGAATAAAGGAAGC 57.168 42.857 22.23 0.00 0.00 3.86
34 35 2.778299 AGCACGTGAATAAAGGAAGCA 58.222 42.857 22.23 0.00 0.00 3.91
35 36 2.484264 AGCACGTGAATAAAGGAAGCAC 59.516 45.455 22.23 0.00 0.00 4.40
36 37 2.484264 GCACGTGAATAAAGGAAGCACT 59.516 45.455 22.23 0.00 0.00 4.40
37 38 3.682858 GCACGTGAATAAAGGAAGCACTA 59.317 43.478 22.23 0.00 0.00 2.74
38 39 4.435651 GCACGTGAATAAAGGAAGCACTAC 60.436 45.833 22.23 0.00 0.00 2.73
39 40 4.688879 CACGTGAATAAAGGAAGCACTACA 59.311 41.667 10.90 0.00 0.00 2.74
40 41 5.351465 CACGTGAATAAAGGAAGCACTACAT 59.649 40.000 10.90 0.00 0.00 2.29
41 42 5.938125 ACGTGAATAAAGGAAGCACTACATT 59.062 36.000 0.00 0.00 0.00 2.71
42 43 6.128282 ACGTGAATAAAGGAAGCACTACATTG 60.128 38.462 0.00 0.00 0.00 2.82
43 44 6.128282 CGTGAATAAAGGAAGCACTACATTGT 60.128 38.462 0.00 0.00 0.00 2.71
44 45 7.023575 GTGAATAAAGGAAGCACTACATTGTG 58.976 38.462 0.00 0.00 40.62 3.33
45 46 6.150976 TGAATAAAGGAAGCACTACATTGTGG 59.849 38.462 0.00 0.00 38.31 4.17
46 47 3.788227 AAGGAAGCACTACATTGTGGA 57.212 42.857 7.20 0.00 38.31 4.02
47 48 3.788227 AGGAAGCACTACATTGTGGAA 57.212 42.857 7.20 0.00 38.31 3.53
48 49 4.307032 AGGAAGCACTACATTGTGGAAT 57.693 40.909 7.20 0.00 38.31 3.01
49 50 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
50 51 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
51 52 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
59 60 5.456921 ACATTGTGGAATGGAGGAAGTAT 57.543 39.130 0.00 0.00 43.00 2.12
394 423 0.037232 GGTACTGACCACTGACCAGC 60.037 60.000 0.00 0.00 46.12 4.85
395 424 0.388649 GTACTGACCACTGACCAGCG 60.389 60.000 0.00 0.00 0.00 5.18
512 541 0.322975 TTGACCTCTTCCAGCTCTGC 59.677 55.000 0.00 0.00 0.00 4.26
709 748 4.083537 CCCACATAAAATATACATGCGCGT 60.084 41.667 8.43 0.00 0.00 6.01
941 980 4.040339 TCTGGACACAGTAAGAAAGATGCA 59.960 41.667 0.00 0.00 45.14 3.96
1009 1059 2.500504 CCTCTCCCCCGGCTATAAATAC 59.499 54.545 0.00 0.00 0.00 1.89
1044 1094 2.025037 TGATATGGAACCAAGCCAAGCT 60.025 45.455 0.00 0.00 42.56 3.74
1100 1154 1.535462 CCCGCACTGAAAACCTTAGTG 59.465 52.381 0.00 0.00 43.49 2.74
1131 1188 0.457851 CTTCCTGTGTAGCTCGAGGG 59.542 60.000 15.58 4.87 0.00 4.30
1149 1206 1.202475 GGGAGAGAGAATCCAACGAGC 60.202 57.143 0.00 0.00 38.70 5.03
1180 1238 4.400961 AAGCCGCAGCAGGAGGTC 62.401 66.667 7.39 0.00 43.56 3.85
1189 1247 1.133407 CAGCAGGAGGTCTACTTCGTC 59.867 57.143 0.00 0.00 0.00 4.20
1222 1280 1.822613 CCCTGTCTACGAGCGCCTA 60.823 63.158 2.29 0.00 0.00 3.93
1255 1313 4.506654 CGGTCTGTATACCTTGCACATAAC 59.493 45.833 0.00 0.00 37.39 1.89
1278 1338 8.558973 AACTATAATGGCTTGCATCTTCTATC 57.441 34.615 0.00 0.00 0.00 2.08
1293 1353 6.036577 TCTTCTATCCAATATATGTGCGCA 57.963 37.500 5.66 5.66 0.00 6.09
1316 1376 3.399440 TTTGATGGATGGTTTGTTGGC 57.601 42.857 0.00 0.00 0.00 4.52
1503 1563 1.512926 CCGCCTATAACCTCACATGC 58.487 55.000 0.00 0.00 0.00 4.06
1504 1564 1.202639 CCGCCTATAACCTCACATGCA 60.203 52.381 0.00 0.00 0.00 3.96
1505 1565 2.550855 CCGCCTATAACCTCACATGCAT 60.551 50.000 0.00 0.00 0.00 3.96
1525 1585 4.567116 GCATCATGGATGTACATGGATCCT 60.567 45.833 14.43 0.00 46.33 3.24
1526 1586 4.897509 TCATGGATGTACATGGATCCTC 57.102 45.455 14.43 0.00 46.33 3.71
1527 1587 4.233729 TCATGGATGTACATGGATCCTCA 58.766 43.478 14.43 5.11 46.33 3.86
1528 1588 4.848086 TCATGGATGTACATGGATCCTCAT 59.152 41.667 14.43 9.51 46.33 2.90
1529 1589 6.024893 TCATGGATGTACATGGATCCTCATA 58.975 40.000 14.43 0.00 46.33 2.15
1530 1590 5.745312 TGGATGTACATGGATCCTCATAC 57.255 43.478 14.43 12.23 39.23 2.39
1531 1591 5.154418 TGGATGTACATGGATCCTCATACA 58.846 41.667 14.43 17.07 39.23 2.29
1532 1592 5.786975 TGGATGTACATGGATCCTCATACAT 59.213 40.000 23.86 23.86 39.23 2.29
1537 1597 4.281898 CATGGATCCTCATACATGCTCA 57.718 45.455 14.23 0.00 43.20 4.26
1538 1598 3.758755 TGGATCCTCATACATGCTCAC 57.241 47.619 14.23 0.00 0.00 3.51
1539 1599 2.369860 TGGATCCTCATACATGCTCACC 59.630 50.000 14.23 0.00 0.00 4.02
1540 1600 2.636893 GGATCCTCATACATGCTCACCT 59.363 50.000 3.84 0.00 0.00 4.00
1541 1601 3.306641 GGATCCTCATACATGCTCACCTC 60.307 52.174 3.84 0.00 0.00 3.85
1555 1615 4.711846 TGCTCACCTCTACTGTACATGAAT 59.288 41.667 0.00 0.00 0.00 2.57
1574 1635 6.627087 TGAATCTTCTCTTACACCCTGATT 57.373 37.500 0.00 0.00 0.00 2.57
1578 1639 3.334583 TCTCTTACACCCTGATTGCAC 57.665 47.619 0.00 0.00 0.00 4.57
1580 1641 2.744202 CTCTTACACCCTGATTGCACAC 59.256 50.000 0.00 0.00 0.00 3.82
1585 1646 1.471287 CACCCTGATTGCACACATGAG 59.529 52.381 0.00 0.00 0.00 2.90
1588 1649 1.081094 CTGATTGCACACATGAGCGA 58.919 50.000 0.00 0.45 34.29 4.93
1589 1650 0.798159 TGATTGCACACATGAGCGAC 59.202 50.000 0.00 0.00 34.29 5.19
1591 1652 1.466167 GATTGCACACATGAGCGACTT 59.534 47.619 0.00 0.00 34.29 3.01
1612 1673 6.702329 ACTTAACTATATACTGATGCAGGCC 58.298 40.000 0.00 0.00 35.51 5.19
1870 1932 3.012518 CCCATGGCTTTGTTGACTCTAG 58.987 50.000 6.09 0.00 0.00 2.43
1908 1971 9.719279 GCTTAGCTACTATCTTTATATACCACG 57.281 37.037 0.00 0.00 0.00 4.94
1933 2005 8.014517 CGTACTACTACTTAATTAGCACTAGCC 58.985 40.741 0.00 0.00 43.56 3.93
2107 2187 6.669977 GCGGTAGTATTTTATAAGCTCATGCG 60.670 42.308 0.00 0.00 45.42 4.73
2122 2202 1.321743 CATGCGTGTACTCTCTTTCGC 59.678 52.381 0.00 0.00 43.14 4.70
2163 2243 2.026729 TGTGTGTCTGACTTTTGGGTCA 60.027 45.455 9.51 0.00 42.96 4.02
2178 2258 7.342799 ACTTTTGGGTCATGTTTCTATATGCAT 59.657 33.333 3.79 3.79 0.00 3.96
2179 2259 6.638096 TTGGGTCATGTTTCTATATGCATG 57.362 37.500 10.16 0.00 39.81 4.06
2180 2260 5.072055 TGGGTCATGTTTCTATATGCATGG 58.928 41.667 10.16 0.00 39.17 3.66
2181 2261 4.460382 GGGTCATGTTTCTATATGCATGGG 59.540 45.833 10.16 0.00 39.17 4.00
2182 2262 5.072741 GGTCATGTTTCTATATGCATGGGT 58.927 41.667 10.16 0.00 39.17 4.51
2183 2263 6.237901 GGTCATGTTTCTATATGCATGGGTA 58.762 40.000 10.16 0.00 39.17 3.69
2189 2275 4.760530 TCTATATGCATGGGTAGATGGC 57.239 45.455 10.16 0.00 0.00 4.40
2194 2280 1.694150 TGCATGGGTAGATGGCTAGAC 59.306 52.381 0.00 0.00 0.00 2.59
2250 2336 3.636764 GGTCTTGGGTTGACTTGTGAAAT 59.363 43.478 0.00 0.00 35.04 2.17
2293 2379 3.503748 GGAGGTTTTGTTGATGAGTGGAG 59.496 47.826 0.00 0.00 0.00 3.86
2354 2440 0.888619 TGCGAGTTTCCGAGATGAGT 59.111 50.000 0.00 0.00 0.00 3.41
2364 2450 3.964411 TCCGAGATGAGTAAACCTCTCA 58.036 45.455 0.00 0.00 44.37 3.27
2384 2470 5.591472 TCTCATGGAAACCTGCAATGATAAG 59.409 40.000 0.00 0.00 0.00 1.73
2461 2551 3.792047 CGATGCAGTGCGTGTGGG 61.792 66.667 16.17 0.00 0.00 4.61
2475 2565 1.197721 GTGTGGGAGCACTTTGATTCG 59.802 52.381 0.00 0.00 36.51 3.34
2570 2660 1.428219 CCGACACGTATCGCTCTGT 59.572 57.895 11.48 0.00 40.87 3.41
2588 2678 1.597854 TCTGACAAAGCTGCCACCG 60.598 57.895 0.00 0.00 0.00 4.94
2613 2703 2.822399 CACTGTAGGATCCCCGCC 59.178 66.667 8.55 0.00 37.58 6.13
2656 2747 2.240493 AAAGTGCGTGTCTAGTGCTT 57.760 45.000 0.00 0.00 0.00 3.91
2673 2764 9.574516 TCTAGTGCTTATCTAGATGTGACATAA 57.425 33.333 15.79 0.00 38.91 1.90
2713 2804 7.461182 TTCTATTTAGTGACCCCATTGTTTG 57.539 36.000 0.00 0.00 0.00 2.93
2717 2808 3.817709 AGTGACCCCATTGTTTGTTTG 57.182 42.857 0.00 0.00 0.00 2.93
2746 2837 8.367943 ACGTTGTTGTGTTTATTCATGTACTA 57.632 30.769 0.00 0.00 0.00 1.82
2763 2854 5.902681 TGTACTATACTTTGCTTGCGAGAT 58.097 37.500 4.70 0.00 0.00 2.75
2764 2855 5.748630 TGTACTATACTTTGCTTGCGAGATG 59.251 40.000 4.70 0.00 0.00 2.90
2765 2856 4.759782 ACTATACTTTGCTTGCGAGATGT 58.240 39.130 4.70 0.00 0.00 3.06
2766 2857 4.568359 ACTATACTTTGCTTGCGAGATGTG 59.432 41.667 4.70 0.00 0.00 3.21
2767 2858 1.597742 ACTTTGCTTGCGAGATGTGT 58.402 45.000 4.70 0.00 0.00 3.72
2782 2873 2.828095 TGTTGGTTGCTGCAGCGT 60.828 55.556 32.11 0.00 45.83 5.07
2784 2875 3.286751 TTGGTTGCTGCAGCGTCC 61.287 61.111 31.74 31.74 45.83 4.79
2795 2887 0.389426 GCAGCGTCCTCGTTTTCCTA 60.389 55.000 0.00 0.00 39.49 2.94
2801 2893 2.428171 CGTCCTCGTTTTCCTATACCCA 59.572 50.000 0.00 0.00 0.00 4.51
2808 2900 4.773674 TCGTTTTCCTATACCCACTTCTCA 59.226 41.667 0.00 0.00 0.00 3.27
2809 2901 4.868734 CGTTTTCCTATACCCACTTCTCAC 59.131 45.833 0.00 0.00 0.00 3.51
2810 2902 5.337330 CGTTTTCCTATACCCACTTCTCACT 60.337 44.000 0.00 0.00 0.00 3.41
2857 2950 9.032624 ACAATCCCGTAGCATAGTATTACTAAT 57.967 33.333 7.61 0.90 33.89 1.73
2902 2995 9.945904 AAAGGTTTTTGATCTCTTACTAGTAGG 57.054 33.333 5.68 5.68 0.00 3.18
2903 2996 7.557724 AGGTTTTTGATCTCTTACTAGTAGGC 58.442 38.462 7.14 0.00 0.00 3.93
2904 2997 7.180408 AGGTTTTTGATCTCTTACTAGTAGGCA 59.820 37.037 7.14 0.00 0.00 4.75
2905 2998 7.822822 GGTTTTTGATCTCTTACTAGTAGGCAA 59.177 37.037 7.14 3.46 0.00 4.52
2906 2999 8.874816 GTTTTTGATCTCTTACTAGTAGGCAAG 58.125 37.037 7.14 2.21 0.00 4.01
2907 3000 7.956328 TTTGATCTCTTACTAGTAGGCAAGA 57.044 36.000 7.14 13.07 0.00 3.02
2908 3001 8.540507 TTTGATCTCTTACTAGTAGGCAAGAT 57.459 34.615 13.09 13.09 0.00 2.40
2909 3002 7.517614 TGATCTCTTACTAGTAGGCAAGATG 57.482 40.000 16.37 7.91 0.00 2.90
2910 3003 7.290813 TGATCTCTTACTAGTAGGCAAGATGA 58.709 38.462 16.37 8.90 0.00 2.92
2911 3004 6.945938 TCTCTTACTAGTAGGCAAGATGAC 57.054 41.667 13.76 0.00 0.00 3.06
2912 3005 5.828859 TCTCTTACTAGTAGGCAAGATGACC 59.171 44.000 13.76 0.00 0.00 4.02
2913 3006 5.516044 TCTTACTAGTAGGCAAGATGACCA 58.484 41.667 7.14 0.00 0.00 4.02
2914 3007 6.136857 TCTTACTAGTAGGCAAGATGACCAT 58.863 40.000 7.14 0.00 0.00 3.55
2915 3008 4.679373 ACTAGTAGGCAAGATGACCATG 57.321 45.455 1.45 0.00 0.00 3.66
2916 3009 2.338577 AGTAGGCAAGATGACCATGC 57.661 50.000 0.00 0.00 39.33 4.06
2917 3010 0.940126 GTAGGCAAGATGACCATGCG 59.060 55.000 0.00 0.00 40.94 4.73
2918 3011 0.815213 TAGGCAAGATGACCATGCGC 60.815 55.000 0.00 0.00 40.94 6.09
2919 3012 2.410469 GCAAGATGACCATGCGCC 59.590 61.111 4.18 0.00 0.00 6.53
2920 3013 2.711311 CAAGATGACCATGCGCCG 59.289 61.111 4.18 0.00 0.00 6.46
2921 3014 2.108514 CAAGATGACCATGCGCCGT 61.109 57.895 4.18 0.00 0.00 5.68
2922 3015 0.809636 CAAGATGACCATGCGCCGTA 60.810 55.000 4.18 0.00 0.00 4.02
2923 3016 0.530650 AAGATGACCATGCGCCGTAG 60.531 55.000 4.18 0.00 0.00 3.51
2939 3032 2.503331 CGTAGGATAATGCATTGCCCA 58.497 47.619 22.27 9.42 0.00 5.36
2940 3033 2.226437 CGTAGGATAATGCATTGCCCAC 59.774 50.000 22.27 18.64 0.00 4.61
2941 3034 2.457813 AGGATAATGCATTGCCCACA 57.542 45.000 22.27 0.50 0.00 4.17
2942 3035 2.966915 AGGATAATGCATTGCCCACAT 58.033 42.857 22.27 6.00 0.00 3.21
2943 3036 2.631062 AGGATAATGCATTGCCCACATG 59.369 45.455 22.27 0.00 0.00 3.21
2944 3037 2.289195 GGATAATGCATTGCCCACATGG 60.289 50.000 22.27 0.00 37.09 3.66
2945 3038 2.156102 TAATGCATTGCCCACATGGA 57.844 45.000 22.27 0.00 37.39 3.41
2946 3039 1.277579 AATGCATTGCCCACATGGAA 58.722 45.000 12.09 0.00 37.39 3.53
2947 3040 0.538118 ATGCATTGCCCACATGGAAC 59.462 50.000 6.12 0.00 37.39 3.62
2966 3059 2.606717 CACGTACGTGTGCTAGAAGA 57.393 50.000 34.48 0.00 40.91 2.87
2967 3060 2.924903 CACGTACGTGTGCTAGAAGAA 58.075 47.619 34.48 0.00 40.91 2.52
2968 3061 2.909244 CACGTACGTGTGCTAGAAGAAG 59.091 50.000 34.48 9.44 40.91 2.85
2969 3062 2.810274 ACGTACGTGTGCTAGAAGAAGA 59.190 45.455 22.14 0.00 0.00 2.87
2970 3063 3.251729 ACGTACGTGTGCTAGAAGAAGAA 59.748 43.478 22.14 0.00 0.00 2.52
2971 3064 4.224433 CGTACGTGTGCTAGAAGAAGAAA 58.776 43.478 7.22 0.00 0.00 2.52
2972 3065 4.678287 CGTACGTGTGCTAGAAGAAGAAAA 59.322 41.667 7.22 0.00 0.00 2.29
2973 3066 5.387137 CGTACGTGTGCTAGAAGAAGAAAAC 60.387 44.000 7.22 0.00 0.00 2.43
2974 3067 4.439057 ACGTGTGCTAGAAGAAGAAAACA 58.561 39.130 0.00 0.00 0.00 2.83
2975 3068 4.873827 ACGTGTGCTAGAAGAAGAAAACAA 59.126 37.500 0.00 0.00 0.00 2.83
2976 3069 5.006746 ACGTGTGCTAGAAGAAGAAAACAAG 59.993 40.000 0.00 0.00 0.00 3.16
2977 3070 5.208503 GTGTGCTAGAAGAAGAAAACAAGC 58.791 41.667 0.00 0.00 0.00 4.01
2978 3071 4.881273 TGTGCTAGAAGAAGAAAACAAGCA 59.119 37.500 0.00 0.00 36.45 3.91
2979 3072 5.356751 TGTGCTAGAAGAAGAAAACAAGCAA 59.643 36.000 0.00 0.00 40.12 3.91
2980 3073 5.911838 GTGCTAGAAGAAGAAAACAAGCAAG 59.088 40.000 0.00 0.00 40.12 4.01
2981 3074 5.009010 TGCTAGAAGAAGAAAACAAGCAAGG 59.991 40.000 0.00 0.00 35.91 3.61
2982 3075 4.926140 AGAAGAAGAAAACAAGCAAGGG 57.074 40.909 0.00 0.00 0.00 3.95
2983 3076 3.638627 AGAAGAAGAAAACAAGCAAGGGG 59.361 43.478 0.00 0.00 0.00 4.79
2984 3077 3.312736 AGAAGAAAACAAGCAAGGGGA 57.687 42.857 0.00 0.00 0.00 4.81
2985 3078 3.225940 AGAAGAAAACAAGCAAGGGGAG 58.774 45.455 0.00 0.00 0.00 4.30
2986 3079 3.117512 AGAAGAAAACAAGCAAGGGGAGA 60.118 43.478 0.00 0.00 0.00 3.71
2987 3080 3.312736 AGAAAACAAGCAAGGGGAGAA 57.687 42.857 0.00 0.00 0.00 2.87
2988 3081 3.642141 AGAAAACAAGCAAGGGGAGAAA 58.358 40.909 0.00 0.00 0.00 2.52
2989 3082 4.030216 AGAAAACAAGCAAGGGGAGAAAA 58.970 39.130 0.00 0.00 0.00 2.29
2990 3083 4.655649 AGAAAACAAGCAAGGGGAGAAAAT 59.344 37.500 0.00 0.00 0.00 1.82
2991 3084 5.838521 AGAAAACAAGCAAGGGGAGAAAATA 59.161 36.000 0.00 0.00 0.00 1.40
2992 3085 6.326323 AGAAAACAAGCAAGGGGAGAAAATAA 59.674 34.615 0.00 0.00 0.00 1.40
2993 3086 5.468540 AACAAGCAAGGGGAGAAAATAAC 57.531 39.130 0.00 0.00 0.00 1.89
2994 3087 4.740902 ACAAGCAAGGGGAGAAAATAACT 58.259 39.130 0.00 0.00 0.00 2.24
2995 3088 5.887754 ACAAGCAAGGGGAGAAAATAACTA 58.112 37.500 0.00 0.00 0.00 2.24
2996 3089 6.311735 ACAAGCAAGGGGAGAAAATAACTAA 58.688 36.000 0.00 0.00 0.00 2.24
2997 3090 6.780522 ACAAGCAAGGGGAGAAAATAACTAAA 59.219 34.615 0.00 0.00 0.00 1.85
2998 3091 7.289084 ACAAGCAAGGGGAGAAAATAACTAAAA 59.711 33.333 0.00 0.00 0.00 1.52
2999 3092 7.228314 AGCAAGGGGAGAAAATAACTAAAAC 57.772 36.000 0.00 0.00 0.00 2.43
3000 3093 6.780522 AGCAAGGGGAGAAAATAACTAAAACA 59.219 34.615 0.00 0.00 0.00 2.83
3001 3094 7.454694 AGCAAGGGGAGAAAATAACTAAAACAT 59.545 33.333 0.00 0.00 0.00 2.71
3002 3095 7.545615 GCAAGGGGAGAAAATAACTAAAACATG 59.454 37.037 0.00 0.00 0.00 3.21
3003 3096 7.718334 AGGGGAGAAAATAACTAAAACATGG 57.282 36.000 0.00 0.00 0.00 3.66
3004 3097 6.154534 AGGGGAGAAAATAACTAAAACATGGC 59.845 38.462 0.00 0.00 0.00 4.40
3005 3098 6.033966 GGGAGAAAATAACTAAAACATGGCG 58.966 40.000 0.00 0.00 0.00 5.69
3006 3099 5.515270 GGAGAAAATAACTAAAACATGGCGC 59.485 40.000 0.00 0.00 0.00 6.53
3007 3100 6.267496 AGAAAATAACTAAAACATGGCGCT 57.733 33.333 7.64 0.00 0.00 5.92
3008 3101 6.092748 AGAAAATAACTAAAACATGGCGCTG 58.907 36.000 7.64 0.00 0.00 5.18
3009 3102 4.370364 AATAACTAAAACATGGCGCTGG 57.630 40.909 7.64 0.00 0.00 4.85
3010 3103 0.243636 AACTAAAACATGGCGCTGGC 59.756 50.000 7.64 0.00 38.90 4.85
3011 3104 0.893270 ACTAAAACATGGCGCTGGCA 60.893 50.000 7.64 7.20 43.52 4.92
3012 3105 0.456653 CTAAAACATGGCGCTGGCAC 60.457 55.000 7.64 0.00 41.84 5.01
3013 3106 0.893270 TAAAACATGGCGCTGGCACT 60.893 50.000 7.64 0.00 41.84 4.40
3014 3107 0.893270 AAAACATGGCGCTGGCACTA 60.893 50.000 7.64 0.00 41.84 2.74
3015 3108 1.586154 AAACATGGCGCTGGCACTAC 61.586 55.000 7.64 0.00 41.84 2.73
3016 3109 2.436469 CATGGCGCTGGCACTACA 60.436 61.111 7.64 0.00 41.84 2.74
3017 3110 2.124983 ATGGCGCTGGCACTACAG 60.125 61.111 7.64 0.00 41.84 2.74
3018 3111 2.959484 ATGGCGCTGGCACTACAGT 61.959 57.895 7.64 0.00 41.84 3.55
3019 3112 2.358737 GGCGCTGGCACTACAGTT 60.359 61.111 7.64 0.00 42.47 3.16
3020 3113 1.966451 GGCGCTGGCACTACAGTTT 60.966 57.895 7.64 0.00 42.47 2.66
3021 3114 1.497722 GCGCTGGCACTACAGTTTC 59.502 57.895 0.00 0.00 40.59 2.78
3022 3115 1.227999 GCGCTGGCACTACAGTTTCA 61.228 55.000 0.00 0.00 40.59 2.69
3023 3116 0.792640 CGCTGGCACTACAGTTTCAG 59.207 55.000 0.00 5.01 40.59 3.02
3024 3117 1.160137 GCTGGCACTACAGTTTCAGG 58.840 55.000 9.43 0.00 40.59 3.86
3025 3118 1.270839 GCTGGCACTACAGTTTCAGGA 60.271 52.381 9.43 0.00 40.59 3.86
3026 3119 2.616510 GCTGGCACTACAGTTTCAGGAT 60.617 50.000 9.43 0.00 40.59 3.24
3027 3120 3.005554 CTGGCACTACAGTTTCAGGATG 58.994 50.000 0.00 0.00 33.81 3.51
3028 3121 2.371841 TGGCACTACAGTTTCAGGATGT 59.628 45.455 0.00 0.00 37.40 3.06
3029 3122 3.580895 TGGCACTACAGTTTCAGGATGTA 59.419 43.478 0.00 0.00 37.40 2.29
3030 3123 4.225042 TGGCACTACAGTTTCAGGATGTAT 59.775 41.667 0.00 0.00 37.40 2.29
3031 3124 4.811557 GGCACTACAGTTTCAGGATGTATC 59.188 45.833 0.00 0.00 37.40 2.24
3032 3125 5.395768 GGCACTACAGTTTCAGGATGTATCT 60.396 44.000 0.00 0.00 37.40 1.98
3033 3126 6.183360 GGCACTACAGTTTCAGGATGTATCTA 60.183 42.308 0.00 0.00 37.40 1.98
3034 3127 6.920758 GCACTACAGTTTCAGGATGTATCTAG 59.079 42.308 0.00 0.00 37.40 2.43
3035 3128 7.416890 GCACTACAGTTTCAGGATGTATCTAGT 60.417 40.741 0.00 0.00 37.40 2.57
3036 3129 9.121658 CACTACAGTTTCAGGATGTATCTAGTA 57.878 37.037 0.00 0.00 37.40 1.82
3037 3130 9.122779 ACTACAGTTTCAGGATGTATCTAGTAC 57.877 37.037 0.00 0.00 37.40 2.73
3038 3131 9.344772 CTACAGTTTCAGGATGTATCTAGTACT 57.655 37.037 0.00 0.00 37.40 2.73
3039 3132 8.001881 ACAGTTTCAGGATGTATCTAGTACTG 57.998 38.462 5.39 0.00 37.40 2.74
3040 3133 7.834681 ACAGTTTCAGGATGTATCTAGTACTGA 59.165 37.037 5.39 1.42 37.40 3.41
3041 3134 8.687242 CAGTTTCAGGATGTATCTAGTACTGAA 58.313 37.037 5.39 1.71 40.48 3.02
3042 3135 8.688151 AGTTTCAGGATGTATCTAGTACTGAAC 58.312 37.037 5.39 0.00 41.49 3.18
3043 3136 8.467598 GTTTCAGGATGTATCTAGTACTGAACA 58.532 37.037 5.39 4.87 41.49 3.18
3044 3137 7.569639 TCAGGATGTATCTAGTACTGAACAC 57.430 40.000 5.39 4.95 37.40 3.32
3045 3138 6.546403 TCAGGATGTATCTAGTACTGAACACC 59.454 42.308 5.39 8.35 37.40 4.16
3046 3139 5.834204 AGGATGTATCTAGTACTGAACACCC 59.166 44.000 5.39 4.94 34.27 4.61
3047 3140 5.597182 GGATGTATCTAGTACTGAACACCCA 59.403 44.000 5.39 0.00 34.27 4.51
3048 3141 6.267928 GGATGTATCTAGTACTGAACACCCAT 59.732 42.308 5.39 0.00 34.27 4.00
3049 3142 7.450634 GGATGTATCTAGTACTGAACACCCATA 59.549 40.741 5.39 0.00 34.27 2.74
3050 3143 8.958060 ATGTATCTAGTACTGAACACCCATAT 57.042 34.615 5.39 0.00 34.27 1.78
3051 3144 8.777578 TGTATCTAGTACTGAACACCCATATT 57.222 34.615 5.39 0.00 34.27 1.28
3052 3145 9.209048 TGTATCTAGTACTGAACACCCATATTT 57.791 33.333 5.39 0.00 34.27 1.40
3055 3148 8.375493 TCTAGTACTGAACACCCATATTTTCT 57.625 34.615 5.39 0.00 0.00 2.52
3056 3149 8.258007 TCTAGTACTGAACACCCATATTTTCTG 58.742 37.037 5.39 0.00 0.00 3.02
3057 3150 5.648092 AGTACTGAACACCCATATTTTCTGC 59.352 40.000 0.00 0.00 0.00 4.26
3058 3151 4.406456 ACTGAACACCCATATTTTCTGCA 58.594 39.130 0.00 0.00 0.00 4.41
3059 3152 4.832266 ACTGAACACCCATATTTTCTGCAA 59.168 37.500 0.00 0.00 0.00 4.08
3060 3153 5.481473 ACTGAACACCCATATTTTCTGCAAT 59.519 36.000 0.00 0.00 0.00 3.56
3061 3154 6.014327 ACTGAACACCCATATTTTCTGCAATT 60.014 34.615 0.00 0.00 0.00 2.32
3062 3155 6.767456 TGAACACCCATATTTTCTGCAATTT 58.233 32.000 0.00 0.00 0.00 1.82
3063 3156 6.649973 TGAACACCCATATTTTCTGCAATTTG 59.350 34.615 0.00 0.00 0.00 2.32
3064 3157 5.490159 ACACCCATATTTTCTGCAATTTGG 58.510 37.500 0.00 0.00 35.87 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.805422 TCACGTGCTTTAACTTTGATCGT 59.195 39.130 11.67 0.00 0.00 3.73
1 2 4.383774 TCACGTGCTTTAACTTTGATCG 57.616 40.909 11.67 0.00 0.00 3.69
2 3 8.722342 TTTATTCACGTGCTTTAACTTTGATC 57.278 30.769 11.67 0.00 0.00 2.92
3 4 7.807907 CCTTTATTCACGTGCTTTAACTTTGAT 59.192 33.333 11.67 0.00 0.00 2.57
4 5 7.012515 TCCTTTATTCACGTGCTTTAACTTTGA 59.987 33.333 11.67 0.00 0.00 2.69
5 6 7.136119 TCCTTTATTCACGTGCTTTAACTTTG 58.864 34.615 11.67 0.00 0.00 2.77
6 7 7.266922 TCCTTTATTCACGTGCTTTAACTTT 57.733 32.000 11.67 0.00 0.00 2.66
7 8 6.870971 TCCTTTATTCACGTGCTTTAACTT 57.129 33.333 11.67 0.00 0.00 2.66
8 9 6.567891 GCTTCCTTTATTCACGTGCTTTAACT 60.568 38.462 11.67 0.00 0.00 2.24
9 10 5.567915 GCTTCCTTTATTCACGTGCTTTAAC 59.432 40.000 11.67 0.00 0.00 2.01
10 11 5.239744 TGCTTCCTTTATTCACGTGCTTTAA 59.760 36.000 11.67 5.67 0.00 1.52
11 12 4.757657 TGCTTCCTTTATTCACGTGCTTTA 59.242 37.500 11.67 0.00 0.00 1.85
12 13 3.568007 TGCTTCCTTTATTCACGTGCTTT 59.432 39.130 11.67 0.00 0.00 3.51
13 14 3.058224 GTGCTTCCTTTATTCACGTGCTT 60.058 43.478 11.67 2.75 0.00 3.91
14 15 2.484264 GTGCTTCCTTTATTCACGTGCT 59.516 45.455 11.67 2.95 0.00 4.40
15 16 2.484264 AGTGCTTCCTTTATTCACGTGC 59.516 45.455 11.67 0.00 33.28 5.34
16 17 4.688879 TGTAGTGCTTCCTTTATTCACGTG 59.311 41.667 9.94 9.94 33.28 4.49
17 18 4.890088 TGTAGTGCTTCCTTTATTCACGT 58.110 39.130 0.00 0.00 33.28 4.49
18 19 6.128282 ACAATGTAGTGCTTCCTTTATTCACG 60.128 38.462 0.00 0.00 33.28 4.35
19 20 7.023575 CACAATGTAGTGCTTCCTTTATTCAC 58.976 38.462 0.00 0.00 32.04 3.18
20 21 6.150976 CCACAATGTAGTGCTTCCTTTATTCA 59.849 38.462 0.00 0.00 38.18 2.57
21 22 6.374333 TCCACAATGTAGTGCTTCCTTTATTC 59.626 38.462 0.00 0.00 38.18 1.75
22 23 6.245408 TCCACAATGTAGTGCTTCCTTTATT 58.755 36.000 0.00 0.00 38.18 1.40
23 24 5.815581 TCCACAATGTAGTGCTTCCTTTAT 58.184 37.500 0.00 0.00 38.18 1.40
24 25 5.235850 TCCACAATGTAGTGCTTCCTTTA 57.764 39.130 0.00 0.00 38.18 1.85
25 26 4.098914 TCCACAATGTAGTGCTTCCTTT 57.901 40.909 0.00 0.00 38.18 3.11
26 27 3.788227 TCCACAATGTAGTGCTTCCTT 57.212 42.857 0.00 0.00 38.18 3.36
27 28 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
28 29 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
29 30 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
30 31 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
31 32 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
32 33 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
33 34 4.220693 TCCTCCATTCCACAATGTAGTG 57.779 45.455 0.00 0.00 38.22 2.74
34 35 4.289672 ACTTCCTCCATTCCACAATGTAGT 59.710 41.667 0.00 0.00 38.22 2.73
35 36 4.848357 ACTTCCTCCATTCCACAATGTAG 58.152 43.478 0.00 0.00 38.22 2.74
36 37 4.927267 ACTTCCTCCATTCCACAATGTA 57.073 40.909 0.00 0.00 38.22 2.29
37 38 3.814504 ACTTCCTCCATTCCACAATGT 57.185 42.857 0.00 0.00 38.22 2.71
38 39 7.000472 ACATATACTTCCTCCATTCCACAATG 59.000 38.462 0.00 0.00 39.45 2.82
39 40 7.154191 ACATATACTTCCTCCATTCCACAAT 57.846 36.000 0.00 0.00 0.00 2.71
40 41 6.575244 ACATATACTTCCTCCATTCCACAA 57.425 37.500 0.00 0.00 0.00 3.33
41 42 7.419750 GGTTACATATACTTCCTCCATTCCACA 60.420 40.741 0.00 0.00 0.00 4.17
42 43 6.935208 GGTTACATATACTTCCTCCATTCCAC 59.065 42.308 0.00 0.00 0.00 4.02
43 44 6.849697 AGGTTACATATACTTCCTCCATTCCA 59.150 38.462 0.00 0.00 0.00 3.53
44 45 7.162082 CAGGTTACATATACTTCCTCCATTCC 58.838 42.308 0.00 0.00 0.00 3.01
45 46 7.736893 ACAGGTTACATATACTTCCTCCATTC 58.263 38.462 0.00 0.00 0.00 2.67
46 47 7.471539 CGACAGGTTACATATACTTCCTCCATT 60.472 40.741 0.00 0.00 0.00 3.16
47 48 6.015350 CGACAGGTTACATATACTTCCTCCAT 60.015 42.308 0.00 0.00 0.00 3.41
48 49 5.301045 CGACAGGTTACATATACTTCCTCCA 59.699 44.000 0.00 0.00 0.00 3.86
49 50 5.301298 ACGACAGGTTACATATACTTCCTCC 59.699 44.000 0.00 0.00 0.00 4.30
50 51 6.207213 CACGACAGGTTACATATACTTCCTC 58.793 44.000 0.00 0.00 0.00 3.71
51 52 5.451520 GCACGACAGGTTACATATACTTCCT 60.452 44.000 0.00 0.00 0.00 3.36
52 53 4.743644 GCACGACAGGTTACATATACTTCC 59.256 45.833 0.00 0.00 0.00 3.46
53 54 5.345702 TGCACGACAGGTTACATATACTTC 58.654 41.667 0.00 0.00 0.00 3.01
54 55 5.333299 TGCACGACAGGTTACATATACTT 57.667 39.130 0.00 0.00 0.00 2.24
55 56 4.994907 TGCACGACAGGTTACATATACT 57.005 40.909 0.00 0.00 0.00 2.12
56 57 4.084537 GCATGCACGACAGGTTACATATAC 60.085 45.833 14.21 0.00 30.99 1.47
59 60 2.276201 GCATGCACGACAGGTTACATA 58.724 47.619 14.21 0.00 30.99 2.29
316 327 4.164664 CAGTACGTACGGCCGCGA 62.165 66.667 28.58 11.43 0.00 5.87
395 424 3.857854 CATGTCGTCGCAGCTGGC 61.858 66.667 17.12 6.97 39.90 4.85
512 541 0.595053 ACGTAGCATGGAATCTCGCG 60.595 55.000 0.00 0.00 0.00 5.87
586 615 3.473147 CTCTGATGGTTGGGCAGAG 57.527 57.895 0.00 0.00 46.51 3.35
659 690 4.397103 CAGTTGCATTGCTGGAGAAGATAA 59.603 41.667 10.49 0.00 0.00 1.75
676 707 2.810439 TTTATGTGGGTTGCAGTTGC 57.190 45.000 0.00 0.00 42.50 4.17
730 769 1.614051 CCCTTGCTTGTCCATGTAGCA 60.614 52.381 0.00 0.00 42.71 3.49
735 774 0.604578 CCAACCCTTGCTTGTCCATG 59.395 55.000 0.00 0.00 0.00 3.66
745 784 2.817844 GCCACTAGTTAACCAACCCTTG 59.182 50.000 0.88 0.00 35.05 3.61
796 835 5.236695 GTCAAGGGAATCTCGCCTATAAAAC 59.763 44.000 0.00 0.00 0.00 2.43
968 1018 1.221840 GGTGGTCACATGCCGATCT 59.778 57.895 3.40 0.00 0.00 2.75
1009 1059 2.019249 CATATCATTGCTATGGGCCGG 58.981 52.381 8.30 0.00 40.92 6.13
1131 1188 1.833860 CGCTCGTTGGATTCTCTCTC 58.166 55.000 0.00 0.00 0.00 3.20
1189 1247 2.996621 GACAGGGTCGAAGTTCATGAAG 59.003 50.000 8.80 0.00 0.00 3.02
1222 1280 0.759436 ATACAGACCGATCGGCCCTT 60.759 55.000 33.62 14.89 39.32 3.95
1255 1313 7.108194 TGGATAGAAGATGCAAGCCATTATAG 58.892 38.462 0.00 0.00 33.29 1.31
1278 1338 4.919206 TCAAAACTGCGCACATATATTGG 58.081 39.130 5.66 0.00 0.00 3.16
1293 1353 4.743348 GCCAACAAACCATCCATCAAAACT 60.743 41.667 0.00 0.00 0.00 2.66
1316 1376 2.328099 GCTTCGTCCTGCACCCAAG 61.328 63.158 0.00 0.00 0.00 3.61
1378 1438 3.713650 AGCTTGGCGAGGAGCTTA 58.286 55.556 3.44 0.00 46.55 3.09
1485 1545 2.238942 TGCATGTGAGGTTATAGGCG 57.761 50.000 0.00 0.00 0.00 5.52
1503 1563 5.175388 AGGATCCATGTACATCCATGATG 57.825 43.478 15.82 2.62 43.99 3.07
1504 1564 4.848086 TGAGGATCCATGTACATCCATGAT 59.152 41.667 15.82 10.11 43.99 2.45
1505 1565 4.233729 TGAGGATCCATGTACATCCATGA 58.766 43.478 15.82 6.26 43.99 3.07
1525 1585 4.281657 ACAGTAGAGGTGAGCATGTATGA 58.718 43.478 0.00 0.00 0.00 2.15
1526 1586 4.662468 ACAGTAGAGGTGAGCATGTATG 57.338 45.455 0.00 0.00 0.00 2.39
1527 1587 5.201243 TGTACAGTAGAGGTGAGCATGTAT 58.799 41.667 0.00 0.00 0.00 2.29
1528 1588 4.595986 TGTACAGTAGAGGTGAGCATGTA 58.404 43.478 0.00 0.00 0.00 2.29
1529 1589 3.431415 TGTACAGTAGAGGTGAGCATGT 58.569 45.455 0.00 0.00 0.00 3.21
1530 1590 4.098501 TCATGTACAGTAGAGGTGAGCATG 59.901 45.833 0.33 0.00 34.77 4.06
1531 1591 4.281657 TCATGTACAGTAGAGGTGAGCAT 58.718 43.478 0.33 0.00 0.00 3.79
1532 1592 3.697166 TCATGTACAGTAGAGGTGAGCA 58.303 45.455 0.33 0.00 0.00 4.26
1533 1593 4.720649 TTCATGTACAGTAGAGGTGAGC 57.279 45.455 0.33 0.00 0.00 4.26
1534 1594 6.707440 AGATTCATGTACAGTAGAGGTGAG 57.293 41.667 0.33 0.00 0.00 3.51
1535 1595 6.892456 AGAAGATTCATGTACAGTAGAGGTGA 59.108 38.462 0.33 0.00 0.00 4.02
1536 1596 7.068103 AGAGAAGATTCATGTACAGTAGAGGTG 59.932 40.741 0.33 0.00 0.00 4.00
1537 1597 7.122715 AGAGAAGATTCATGTACAGTAGAGGT 58.877 38.462 0.33 0.00 0.00 3.85
1538 1598 7.581213 AGAGAAGATTCATGTACAGTAGAGG 57.419 40.000 0.33 0.00 0.00 3.69
1539 1599 9.944663 GTAAGAGAAGATTCATGTACAGTAGAG 57.055 37.037 0.33 0.00 0.00 2.43
1540 1600 9.462606 TGTAAGAGAAGATTCATGTACAGTAGA 57.537 33.333 0.33 0.00 0.00 2.59
1541 1601 9.509855 GTGTAAGAGAAGATTCATGTACAGTAG 57.490 37.037 0.33 0.00 0.00 2.57
1555 1615 3.582647 TGCAATCAGGGTGTAAGAGAAGA 59.417 43.478 0.00 0.00 0.00 2.87
1574 1635 1.798223 GTTAAGTCGCTCATGTGTGCA 59.202 47.619 3.45 0.00 34.50 4.57
1578 1639 8.290325 TCAGTATATAGTTAAGTCGCTCATGTG 58.710 37.037 0.00 0.00 0.00 3.21
1580 1641 9.283420 CATCAGTATATAGTTAAGTCGCTCATG 57.717 37.037 0.00 0.00 0.00 3.07
1585 1646 6.528423 CCTGCATCAGTATATAGTTAAGTCGC 59.472 42.308 0.00 0.00 0.00 5.19
1588 1649 6.270000 TGGCCTGCATCAGTATATAGTTAAGT 59.730 38.462 3.32 0.00 0.00 2.24
1589 1650 6.701340 TGGCCTGCATCAGTATATAGTTAAG 58.299 40.000 3.32 0.00 0.00 1.85
1591 1652 5.337571 GCTGGCCTGCATCAGTATATAGTTA 60.338 44.000 27.96 0.00 33.81 2.24
1905 1968 9.861138 CTAGTGCTAATTAAGTAGTAGTACGTG 57.139 37.037 11.30 0.53 38.41 4.49
1907 1970 8.014517 GGCTAGTGCTAATTAAGTAGTAGTACG 58.985 40.741 11.30 8.90 42.68 3.67
1908 1971 8.014517 CGGCTAGTGCTAATTAAGTAGTAGTAC 58.985 40.741 11.30 0.00 42.68 2.73
1909 1972 7.308229 GCGGCTAGTGCTAATTAAGTAGTAGTA 60.308 40.741 11.30 12.18 42.68 1.82
1910 1973 6.514705 GCGGCTAGTGCTAATTAAGTAGTAGT 60.515 42.308 12.08 12.08 42.68 2.73
1911 1974 5.857517 GCGGCTAGTGCTAATTAAGTAGTAG 59.142 44.000 11.30 6.73 43.24 2.57
1962 2034 5.120399 CCCTAGCTAGTAAGATCGATCGAT 58.880 45.833 29.76 29.76 37.59 3.59
1963 2035 4.020396 ACCCTAGCTAGTAAGATCGATCGA 60.020 45.833 21.86 21.86 0.00 3.59
1964 2036 4.255301 ACCCTAGCTAGTAAGATCGATCG 58.745 47.826 19.33 9.36 0.00 3.69
1965 2037 5.493809 AGACCCTAGCTAGTAAGATCGATC 58.506 45.833 17.91 17.91 0.00 3.69
2005 2080 3.365364 GCAGGGTTCAATCTTCAAAGTCG 60.365 47.826 0.00 0.00 0.00 4.18
2107 2187 2.030185 TGGACAGCGAAAGAGAGTACAC 60.030 50.000 0.00 0.00 0.00 2.90
2122 2202 0.172578 CTGCCATGCATGTTGGACAG 59.827 55.000 24.58 17.85 38.13 3.51
2163 2243 7.114754 CCATCTACCCATGCATATAGAAACAT 58.885 38.462 14.93 1.30 0.00 2.71
2178 2258 2.426651 GCGTCTAGCCATCTACCCA 58.573 57.895 0.00 0.00 40.81 4.51
2189 2275 0.729116 CACCCAAAGCATGCGTCTAG 59.271 55.000 13.01 5.28 0.00 2.43
2194 2280 1.594194 TTAGGCACCCAAAGCATGCG 61.594 55.000 13.01 0.00 40.37 4.73
2250 2336 4.090090 CCTCCTCTTCCTTGTCTTGTAGA 58.910 47.826 0.00 0.00 0.00 2.59
2265 2351 3.652869 TCATCAACAAAACCTCCTCCTCT 59.347 43.478 0.00 0.00 0.00 3.69
2354 2440 3.073798 TGCAGGTTTCCATGAGAGGTTTA 59.926 43.478 0.00 0.00 0.00 2.01
2364 2450 5.263599 TGTCTTATCATTGCAGGTTTCCAT 58.736 37.500 0.00 0.00 0.00 3.41
2461 2551 5.095691 TGAAAACTCGAATCAAAGTGCTC 57.904 39.130 0.00 0.00 0.00 4.26
2475 2565 3.601435 GGTTCTCTAGGCCTGAAAACTC 58.399 50.000 17.99 5.12 0.00 3.01
2570 2660 1.597854 CGGTGGCAGCTTTGTCAGA 60.598 57.895 15.48 0.00 0.00 3.27
2588 2678 2.925162 GATCCTACAGTGCACCGCCC 62.925 65.000 14.63 0.00 0.00 6.13
2693 2784 6.126911 ACAAACAAACAATGGGGTCACTAAAT 60.127 34.615 0.00 0.00 0.00 1.40
2713 2804 9.435802 TGAATAAACACAACAACGTATACAAAC 57.564 29.630 3.32 0.00 0.00 2.93
2746 2837 3.338249 ACACATCTCGCAAGCAAAGTAT 58.662 40.909 0.00 0.00 37.18 2.12
2749 2840 2.313234 CAACACATCTCGCAAGCAAAG 58.687 47.619 0.00 0.00 37.18 2.77
2752 2843 0.534877 ACCAACACATCTCGCAAGCA 60.535 50.000 0.00 0.00 37.18 3.91
2753 2844 0.593128 AACCAACACATCTCGCAAGC 59.407 50.000 0.00 0.00 37.18 4.01
2758 2849 0.110056 GCAGCAACCAACACATCTCG 60.110 55.000 0.00 0.00 0.00 4.04
2763 2854 2.806929 GCTGCAGCAACCAACACA 59.193 55.556 33.36 0.00 41.59 3.72
2764 2855 2.353839 CGCTGCAGCAACCAACAC 60.354 61.111 36.03 5.81 42.21 3.32
2765 2856 2.828095 ACGCTGCAGCAACCAACA 60.828 55.556 36.03 0.00 42.21 3.33
2766 2857 2.050985 GACGCTGCAGCAACCAAC 60.051 61.111 36.03 16.71 42.21 3.77
2767 2858 3.286751 GGACGCTGCAGCAACCAA 61.287 61.111 36.03 0.00 42.21 3.67
2782 2873 3.716431 AGTGGGTATAGGAAAACGAGGA 58.284 45.455 0.00 0.00 0.00 3.71
2784 2875 5.105473 TGAGAAGTGGGTATAGGAAAACGAG 60.105 44.000 0.00 0.00 0.00 4.18
2808 2900 1.893210 GCTCCTCCACTCCACTACAGT 60.893 57.143 0.00 0.00 0.00 3.55
2809 2901 0.820871 GCTCCTCCACTCCACTACAG 59.179 60.000 0.00 0.00 0.00 2.74
2810 2902 0.114364 TGCTCCTCCACTCCACTACA 59.886 55.000 0.00 0.00 0.00 2.74
2879 2972 7.328737 TGCCTACTAGTAAGAGATCAAAAACC 58.671 38.462 3.76 0.00 0.00 3.27
2881 2974 8.812972 TCTTGCCTACTAGTAAGAGATCAAAAA 58.187 33.333 3.76 0.00 0.00 1.94
2882 2975 8.362464 TCTTGCCTACTAGTAAGAGATCAAAA 57.638 34.615 3.76 0.00 0.00 2.44
2883 2976 7.956328 TCTTGCCTACTAGTAAGAGATCAAA 57.044 36.000 3.76 0.00 0.00 2.69
2884 2977 7.780271 TCATCTTGCCTACTAGTAAGAGATCAA 59.220 37.037 10.69 5.70 33.19 2.57
2885 2978 7.229707 GTCATCTTGCCTACTAGTAAGAGATCA 59.770 40.741 10.69 0.04 33.19 2.92
2886 2979 7.308951 GGTCATCTTGCCTACTAGTAAGAGATC 60.309 44.444 10.69 6.22 33.19 2.75
2887 2980 6.492087 GGTCATCTTGCCTACTAGTAAGAGAT 59.508 42.308 10.69 10.02 33.19 2.75
2888 2981 5.828859 GGTCATCTTGCCTACTAGTAAGAGA 59.171 44.000 10.69 8.54 33.19 3.10
2889 2982 5.594725 TGGTCATCTTGCCTACTAGTAAGAG 59.405 44.000 10.69 0.00 33.19 2.85
2890 2983 5.516044 TGGTCATCTTGCCTACTAGTAAGA 58.484 41.667 8.00 8.00 34.09 2.10
2891 2984 5.854010 TGGTCATCTTGCCTACTAGTAAG 57.146 43.478 3.76 0.00 0.00 2.34
2892 2985 5.453339 GCATGGTCATCTTGCCTACTAGTAA 60.453 44.000 3.76 0.00 39.70 2.24
2893 2986 4.039245 GCATGGTCATCTTGCCTACTAGTA 59.961 45.833 1.89 1.89 39.70 1.82
2894 2987 3.181461 GCATGGTCATCTTGCCTACTAGT 60.181 47.826 0.00 0.00 39.70 2.57
2895 2988 3.397482 GCATGGTCATCTTGCCTACTAG 58.603 50.000 0.00 0.00 39.70 2.57
2896 2989 2.224042 CGCATGGTCATCTTGCCTACTA 60.224 50.000 0.00 0.00 41.75 1.82
2897 2990 1.473965 CGCATGGTCATCTTGCCTACT 60.474 52.381 0.00 0.00 41.75 2.57
2898 2991 0.940126 CGCATGGTCATCTTGCCTAC 59.060 55.000 0.00 0.00 41.75 3.18
2899 2992 0.815213 GCGCATGGTCATCTTGCCTA 60.815 55.000 0.30 0.00 41.75 3.93
2900 2993 2.117156 GCGCATGGTCATCTTGCCT 61.117 57.895 0.30 0.00 41.75 4.75
2901 2994 2.410469 GCGCATGGTCATCTTGCC 59.590 61.111 0.30 0.00 41.75 4.52
2902 2995 2.410469 GGCGCATGGTCATCTTGC 59.590 61.111 10.83 0.00 41.47 4.01
2903 2996 0.809636 TACGGCGCATGGTCATCTTG 60.810 55.000 10.83 0.00 0.00 3.02
2904 2997 0.530650 CTACGGCGCATGGTCATCTT 60.531 55.000 10.83 0.00 0.00 2.40
2905 2998 1.068083 CTACGGCGCATGGTCATCT 59.932 57.895 10.83 0.00 0.00 2.90
2906 2999 1.956170 CCTACGGCGCATGGTCATC 60.956 63.158 10.83 0.00 0.00 2.92
2907 3000 1.758440 ATCCTACGGCGCATGGTCAT 61.758 55.000 10.83 0.00 0.00 3.06
2908 3001 1.110518 TATCCTACGGCGCATGGTCA 61.111 55.000 10.83 0.00 0.00 4.02
2909 3002 0.032952 TTATCCTACGGCGCATGGTC 59.967 55.000 10.83 0.00 0.00 4.02
2910 3003 0.685097 ATTATCCTACGGCGCATGGT 59.315 50.000 10.83 6.47 0.00 3.55
2911 3004 1.078709 CATTATCCTACGGCGCATGG 58.921 55.000 10.83 6.97 0.00 3.66
2912 3005 0.443869 GCATTATCCTACGGCGCATG 59.556 55.000 10.83 2.89 0.00 4.06
2913 3006 0.034756 TGCATTATCCTACGGCGCAT 59.965 50.000 10.83 0.00 0.00 4.73
2914 3007 0.034756 ATGCATTATCCTACGGCGCA 59.965 50.000 10.83 0.00 0.00 6.09
2915 3008 1.135972 CAATGCATTATCCTACGGCGC 60.136 52.381 12.53 0.00 0.00 6.53
2916 3009 1.135972 GCAATGCATTATCCTACGGCG 60.136 52.381 12.53 4.80 0.00 6.46
2917 3010 1.200020 GGCAATGCATTATCCTACGGC 59.800 52.381 12.53 8.54 0.00 5.68
2918 3011 1.812571 GGGCAATGCATTATCCTACGG 59.187 52.381 21.97 7.16 0.00 4.02
2919 3012 2.226437 GTGGGCAATGCATTATCCTACG 59.774 50.000 21.85 8.05 0.00 3.51
2920 3013 3.221771 TGTGGGCAATGCATTATCCTAC 58.778 45.455 26.00 26.00 0.00 3.18
2921 3014 3.591695 TGTGGGCAATGCATTATCCTA 57.408 42.857 22.74 17.16 0.00 2.94
2922 3015 2.457813 TGTGGGCAATGCATTATCCT 57.542 45.000 22.74 0.00 0.00 3.24
2923 3016 2.289195 CCATGTGGGCAATGCATTATCC 60.289 50.000 12.53 16.12 0.00 2.59
2924 3017 2.629137 TCCATGTGGGCAATGCATTATC 59.371 45.455 12.53 6.96 36.21 1.75
2925 3018 2.680251 TCCATGTGGGCAATGCATTAT 58.320 42.857 12.53 0.00 36.21 1.28
2926 3019 2.156102 TCCATGTGGGCAATGCATTA 57.844 45.000 12.53 0.00 36.21 1.90
2927 3020 1.065998 GTTCCATGTGGGCAATGCATT 60.066 47.619 5.99 5.99 36.21 3.56
2928 3021 0.538118 GTTCCATGTGGGCAATGCAT 59.462 50.000 7.79 0.00 36.21 3.96
2929 3022 0.830866 TGTTCCATGTGGGCAATGCA 60.831 50.000 7.79 0.00 36.21 3.96
2930 3023 0.390209 GTGTTCCATGTGGGCAATGC 60.390 55.000 0.00 0.00 36.21 3.56
2931 3024 0.109179 CGTGTTCCATGTGGGCAATG 60.109 55.000 0.00 0.00 36.21 2.82
2932 3025 0.539438 ACGTGTTCCATGTGGGCAAT 60.539 50.000 0.00 0.00 31.87 3.56
2933 3026 0.108774 TACGTGTTCCATGTGGGCAA 59.891 50.000 0.00 0.00 35.12 4.52
2934 3027 0.604243 GTACGTGTTCCATGTGGGCA 60.604 55.000 0.00 0.00 35.12 5.36
2935 3028 1.632046 CGTACGTGTTCCATGTGGGC 61.632 60.000 7.22 0.00 35.12 5.36
2936 3029 0.320073 ACGTACGTGTTCCATGTGGG 60.320 55.000 22.14 0.00 35.12 4.61
2937 3030 0.787787 CACGTACGTGTTCCATGTGG 59.212 55.000 34.48 10.15 40.91 4.17
2948 3041 2.810274 TCTTCTTCTAGCACACGTACGT 59.190 45.455 16.72 16.72 0.00 3.57
2949 3042 3.466712 TCTTCTTCTAGCACACGTACG 57.533 47.619 15.01 15.01 0.00 3.67
2950 3043 5.461078 TGTTTTCTTCTTCTAGCACACGTAC 59.539 40.000 0.00 0.00 0.00 3.67
2951 3044 5.593968 TGTTTTCTTCTTCTAGCACACGTA 58.406 37.500 0.00 0.00 0.00 3.57
2952 3045 4.439057 TGTTTTCTTCTTCTAGCACACGT 58.561 39.130 0.00 0.00 0.00 4.49
2953 3046 5.403897 TTGTTTTCTTCTTCTAGCACACG 57.596 39.130 0.00 0.00 0.00 4.49
2954 3047 5.208503 GCTTGTTTTCTTCTTCTAGCACAC 58.791 41.667 0.00 0.00 0.00 3.82
2955 3048 4.881273 TGCTTGTTTTCTTCTTCTAGCACA 59.119 37.500 0.00 0.00 34.89 4.57
2956 3049 5.424121 TGCTTGTTTTCTTCTTCTAGCAC 57.576 39.130 0.00 0.00 34.89 4.40
2957 3050 5.009010 CCTTGCTTGTTTTCTTCTTCTAGCA 59.991 40.000 0.00 0.00 37.03 3.49
2958 3051 5.456265 CCTTGCTTGTTTTCTTCTTCTAGC 58.544 41.667 0.00 0.00 0.00 3.42
2959 3052 5.048434 CCCCTTGCTTGTTTTCTTCTTCTAG 60.048 44.000 0.00 0.00 0.00 2.43
2960 3053 4.827284 CCCCTTGCTTGTTTTCTTCTTCTA 59.173 41.667 0.00 0.00 0.00 2.10
2961 3054 3.638627 CCCCTTGCTTGTTTTCTTCTTCT 59.361 43.478 0.00 0.00 0.00 2.85
2962 3055 3.636764 TCCCCTTGCTTGTTTTCTTCTTC 59.363 43.478 0.00 0.00 0.00 2.87
2963 3056 3.638627 CTCCCCTTGCTTGTTTTCTTCTT 59.361 43.478 0.00 0.00 0.00 2.52
2964 3057 3.117512 TCTCCCCTTGCTTGTTTTCTTCT 60.118 43.478 0.00 0.00 0.00 2.85
2965 3058 3.222603 TCTCCCCTTGCTTGTTTTCTTC 58.777 45.455 0.00 0.00 0.00 2.87
2966 3059 3.312736 TCTCCCCTTGCTTGTTTTCTT 57.687 42.857 0.00 0.00 0.00 2.52
2967 3060 3.312736 TTCTCCCCTTGCTTGTTTTCT 57.687 42.857 0.00 0.00 0.00 2.52
2968 3061 4.400529 TTTTCTCCCCTTGCTTGTTTTC 57.599 40.909 0.00 0.00 0.00 2.29
2969 3062 6.099701 AGTTATTTTCTCCCCTTGCTTGTTTT 59.900 34.615 0.00 0.00 0.00 2.43
2970 3063 5.602561 AGTTATTTTCTCCCCTTGCTTGTTT 59.397 36.000 0.00 0.00 0.00 2.83
2971 3064 5.147767 AGTTATTTTCTCCCCTTGCTTGTT 58.852 37.500 0.00 0.00 0.00 2.83
2972 3065 4.740902 AGTTATTTTCTCCCCTTGCTTGT 58.259 39.130 0.00 0.00 0.00 3.16
2973 3066 6.834168 TTAGTTATTTTCTCCCCTTGCTTG 57.166 37.500 0.00 0.00 0.00 4.01
2974 3067 7.289084 TGTTTTAGTTATTTTCTCCCCTTGCTT 59.711 33.333 0.00 0.00 0.00 3.91
2975 3068 6.780522 TGTTTTAGTTATTTTCTCCCCTTGCT 59.219 34.615 0.00 0.00 0.00 3.91
2976 3069 6.988522 TGTTTTAGTTATTTTCTCCCCTTGC 58.011 36.000 0.00 0.00 0.00 4.01
2977 3070 8.034804 CCATGTTTTAGTTATTTTCTCCCCTTG 58.965 37.037 0.00 0.00 0.00 3.61
2978 3071 7.310423 GCCATGTTTTAGTTATTTTCTCCCCTT 60.310 37.037 0.00 0.00 0.00 3.95
2979 3072 6.154534 GCCATGTTTTAGTTATTTTCTCCCCT 59.845 38.462 0.00 0.00 0.00 4.79
2980 3073 6.338146 GCCATGTTTTAGTTATTTTCTCCCC 58.662 40.000 0.00 0.00 0.00 4.81
2981 3074 6.033966 CGCCATGTTTTAGTTATTTTCTCCC 58.966 40.000 0.00 0.00 0.00 4.30
2982 3075 5.515270 GCGCCATGTTTTAGTTATTTTCTCC 59.485 40.000 0.00 0.00 0.00 3.71
2983 3076 6.251376 CAGCGCCATGTTTTAGTTATTTTCTC 59.749 38.462 2.29 0.00 0.00 2.87
2984 3077 6.092748 CAGCGCCATGTTTTAGTTATTTTCT 58.907 36.000 2.29 0.00 0.00 2.52
2985 3078 5.288472 CCAGCGCCATGTTTTAGTTATTTTC 59.712 40.000 2.29 0.00 0.00 2.29
2986 3079 5.167845 CCAGCGCCATGTTTTAGTTATTTT 58.832 37.500 2.29 0.00 0.00 1.82
2987 3080 4.743493 CCAGCGCCATGTTTTAGTTATTT 58.257 39.130 2.29 0.00 0.00 1.40
2988 3081 3.428862 GCCAGCGCCATGTTTTAGTTATT 60.429 43.478 2.29 0.00 0.00 1.40
2989 3082 2.099098 GCCAGCGCCATGTTTTAGTTAT 59.901 45.455 2.29 0.00 0.00 1.89
2990 3083 1.470890 GCCAGCGCCATGTTTTAGTTA 59.529 47.619 2.29 0.00 0.00 2.24
2991 3084 0.243636 GCCAGCGCCATGTTTTAGTT 59.756 50.000 2.29 0.00 0.00 2.24
2992 3085 0.893270 TGCCAGCGCCATGTTTTAGT 60.893 50.000 2.29 0.00 0.00 2.24
2993 3086 0.456653 GTGCCAGCGCCATGTTTTAG 60.457 55.000 2.29 0.00 0.00 1.85
2994 3087 0.893270 AGTGCCAGCGCCATGTTTTA 60.893 50.000 2.29 0.00 0.00 1.52
2995 3088 0.893270 TAGTGCCAGCGCCATGTTTT 60.893 50.000 2.29 0.00 0.00 2.43
2996 3089 1.303236 TAGTGCCAGCGCCATGTTT 60.303 52.632 2.29 0.00 0.00 2.83
2997 3090 2.040544 GTAGTGCCAGCGCCATGTT 61.041 57.895 2.29 0.00 0.00 2.71
2998 3091 2.436646 GTAGTGCCAGCGCCATGT 60.437 61.111 2.29 0.00 0.00 3.21
2999 3092 2.436469 TGTAGTGCCAGCGCCATG 60.436 61.111 2.29 0.00 0.00 3.66
3000 3093 2.124983 CTGTAGTGCCAGCGCCAT 60.125 61.111 2.29 0.00 0.00 4.40
3001 3094 2.674563 AAACTGTAGTGCCAGCGCCA 62.675 55.000 2.29 0.00 35.83 5.69
3002 3095 1.912371 GAAACTGTAGTGCCAGCGCC 61.912 60.000 2.29 0.00 35.83 6.53
3003 3096 1.227999 TGAAACTGTAGTGCCAGCGC 61.228 55.000 0.00 0.00 35.83 5.92
3004 3097 0.792640 CTGAAACTGTAGTGCCAGCG 59.207 55.000 0.00 0.00 35.83 5.18
3005 3098 1.160137 CCTGAAACTGTAGTGCCAGC 58.840 55.000 7.84 0.00 35.83 4.85
3006 3099 2.839486 TCCTGAAACTGTAGTGCCAG 57.161 50.000 6.84 6.84 38.45 4.85
3007 3100 2.371841 ACATCCTGAAACTGTAGTGCCA 59.628 45.455 0.00 0.00 0.00 4.92
3008 3101 3.059352 ACATCCTGAAACTGTAGTGCC 57.941 47.619 0.00 0.00 0.00 5.01
3009 3102 5.665459 AGATACATCCTGAAACTGTAGTGC 58.335 41.667 0.00 0.00 0.00 4.40
3010 3103 8.001881 ACTAGATACATCCTGAAACTGTAGTG 57.998 38.462 0.00 0.00 0.00 2.74
3011 3104 9.122779 GTACTAGATACATCCTGAAACTGTAGT 57.877 37.037 0.00 0.00 33.54 2.73
3012 3105 9.344772 AGTACTAGATACATCCTGAAACTGTAG 57.655 37.037 0.00 0.00 36.09 2.74
3013 3106 9.121658 CAGTACTAGATACATCCTGAAACTGTA 57.878 37.037 0.00 0.00 36.09 2.74
3014 3107 7.834681 TCAGTACTAGATACATCCTGAAACTGT 59.165 37.037 0.00 0.00 36.09 3.55
3015 3108 8.226819 TCAGTACTAGATACATCCTGAAACTG 57.773 38.462 0.00 0.00 36.09 3.16
3016 3109 8.688151 GTTCAGTACTAGATACATCCTGAAACT 58.312 37.037 0.00 0.00 36.09 2.66
3017 3110 8.467598 TGTTCAGTACTAGATACATCCTGAAAC 58.532 37.037 0.00 0.00 36.09 2.78
3018 3111 8.467598 GTGTTCAGTACTAGATACATCCTGAAA 58.532 37.037 0.00 0.00 36.09 2.69
3019 3112 7.068348 GGTGTTCAGTACTAGATACATCCTGAA 59.932 40.741 0.00 0.00 36.09 3.02
3020 3113 6.546403 GGTGTTCAGTACTAGATACATCCTGA 59.454 42.308 0.00 0.00 36.09 3.86
3021 3114 6.239064 GGGTGTTCAGTACTAGATACATCCTG 60.239 46.154 15.53 0.00 34.67 3.86
3022 3115 5.834204 GGGTGTTCAGTACTAGATACATCCT 59.166 44.000 15.53 0.00 34.67 3.24
3023 3116 5.597182 TGGGTGTTCAGTACTAGATACATCC 59.403 44.000 15.78 15.78 37.31 3.51
3024 3117 6.710597 TGGGTGTTCAGTACTAGATACATC 57.289 41.667 0.00 0.00 36.09 3.06
3025 3118 8.958060 ATATGGGTGTTCAGTACTAGATACAT 57.042 34.615 0.00 0.00 36.09 2.29
3026 3119 8.777578 AATATGGGTGTTCAGTACTAGATACA 57.222 34.615 0.00 0.00 36.09 2.29
3029 3122 8.993424 AGAAAATATGGGTGTTCAGTACTAGAT 58.007 33.333 0.00 0.00 0.00 1.98
3030 3123 8.258007 CAGAAAATATGGGTGTTCAGTACTAGA 58.742 37.037 0.00 0.00 0.00 2.43
3031 3124 7.011482 GCAGAAAATATGGGTGTTCAGTACTAG 59.989 40.741 0.00 0.00 0.00 2.57
3032 3125 6.821665 GCAGAAAATATGGGTGTTCAGTACTA 59.178 38.462 0.00 0.00 0.00 1.82
3033 3126 5.648092 GCAGAAAATATGGGTGTTCAGTACT 59.352 40.000 0.00 0.00 0.00 2.73
3034 3127 5.414454 TGCAGAAAATATGGGTGTTCAGTAC 59.586 40.000 0.00 0.00 0.00 2.73
3035 3128 5.565509 TGCAGAAAATATGGGTGTTCAGTA 58.434 37.500 0.00 0.00 0.00 2.74
3036 3129 4.406456 TGCAGAAAATATGGGTGTTCAGT 58.594 39.130 0.00 0.00 0.00 3.41
3037 3130 5.389859 TTGCAGAAAATATGGGTGTTCAG 57.610 39.130 0.00 0.00 0.00 3.02
3038 3131 5.999205 ATTGCAGAAAATATGGGTGTTCA 57.001 34.783 0.00 0.00 0.00 3.18
3039 3132 6.092533 CCAAATTGCAGAAAATATGGGTGTTC 59.907 38.462 0.00 0.00 0.00 3.18
3040 3133 5.939296 CCAAATTGCAGAAAATATGGGTGTT 59.061 36.000 0.00 0.00 0.00 3.32
3041 3134 5.490159 CCAAATTGCAGAAAATATGGGTGT 58.510 37.500 0.00 0.00 0.00 4.16
3042 3135 4.877251 CCCAAATTGCAGAAAATATGGGTG 59.123 41.667 10.06 0.00 41.08 4.61
3043 3136 5.101648 CCCAAATTGCAGAAAATATGGGT 57.898 39.130 10.06 0.00 41.08 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.