Multiple sequence alignment - TraesCS3A01G144800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G144800 chr3A 100.000 4539 0 0 1 4539 127270833 127275371 0.000000e+00 8383.0
1 TraesCS3A01G144800 chr3A 100.000 31 0 0 3296 3326 67359627 67359657 1.760000e-04 58.4
2 TraesCS3A01G144800 chr3D 92.959 3437 139 37 840 4231 120312722 120316100 0.000000e+00 4911.0
3 TraesCS3A01G144800 chr3D 94.427 323 9 4 3909 4231 120322936 120323249 5.280000e-134 488.0
4 TraesCS3A01G144800 chr3D 93.043 230 16 0 4223 4452 120326378 120326607 2.020000e-88 337.0
5 TraesCS3A01G144800 chr3D 97.222 72 2 0 772 843 120312622 120312693 6.170000e-24 122.0
6 TraesCS3A01G144800 chr3D 82.787 122 15 4 3806 3926 58398522 58398638 2.230000e-18 104.0
7 TraesCS3A01G144800 chr3D 83.824 68 6 1 3264 3326 58398440 58398507 4.900000e-05 60.2
8 TraesCS3A01G144800 chr3B 92.531 1861 86 18 1983 3828 172449620 172451442 0.000000e+00 2617.0
9 TraesCS3A01G144800 chr3B 92.477 864 29 17 840 1668 172447603 172448465 0.000000e+00 1203.0
10 TraesCS3A01G144800 chr3B 92.759 290 19 2 1694 1982 172448675 172448963 7.020000e-113 418.0
11 TraesCS3A01G144800 chr3B 91.515 165 13 1 4191 4355 172451609 172451772 4.570000e-55 226.0
12 TraesCS3A01G144800 chr3B 96.040 101 4 0 4351 4451 172453609 172453709 1.010000e-36 165.0
13 TraesCS3A01G144800 chr3B 87.069 116 9 3 3806 3917 92594073 92594186 4.770000e-25 126.0
14 TraesCS3A01G144800 chr3B 96.875 32 1 0 3971 4002 172451499 172451530 2.000000e-03 54.7
15 TraesCS3A01G144800 chr2B 98.641 515 4 3 1 514 304259574 304260086 0.000000e+00 909.0
16 TraesCS3A01G144800 chr2B 95.758 165 7 0 511 675 560443410 560443246 2.690000e-67 267.0
17 TraesCS3A01G144800 chr2B 94.578 166 9 0 512 677 418664250 418664085 1.620000e-64 257.0
18 TraesCS3A01G144800 chr6A 98.249 514 7 2 1 513 590113643 590114155 0.000000e+00 898.0
19 TraesCS3A01G144800 chr6A 98.058 515 7 3 1 514 578439880 578440392 0.000000e+00 893.0
20 TraesCS3A01G144800 chr6A 97.476 515 11 2 1 514 488407518 488408031 0.000000e+00 878.0
21 TraesCS3A01G144800 chr1A 98.252 515 6 2 1 514 209394251 209394763 0.000000e+00 898.0
22 TraesCS3A01G144800 chr1A 98.773 163 2 0 513 675 44412582 44412420 1.600000e-74 291.0
23 TraesCS3A01G144800 chr7B 98.058 515 9 1 1 514 74272998 74272484 0.000000e+00 894.0
24 TraesCS3A01G144800 chr7B 82.074 887 93 31 939 1789 672382382 672383238 0.000000e+00 697.0
25 TraesCS3A01G144800 chr7B 81.849 887 95 31 939 1789 672334793 672335649 0.000000e+00 686.0
26 TraesCS3A01G144800 chr7B 93.023 172 11 1 507 677 741942703 741942532 2.710000e-62 250.0
27 TraesCS3A01G144800 chr4A 98.058 515 9 1 1 514 647520717 647521231 0.000000e+00 894.0
28 TraesCS3A01G144800 chr4A 97.835 508 8 3 5 511 541687337 541686832 0.000000e+00 874.0
29 TraesCS3A01G144800 chr4A 95.758 165 7 0 513 677 667379809 667379645 2.690000e-67 267.0
30 TraesCS3A01G144800 chr5A 96.705 516 13 4 1 514 649321581 649322094 0.000000e+00 856.0
31 TraesCS3A01G144800 chr5A 94.479 163 9 0 513 675 269823295 269823457 7.540000e-63 252.0
32 TraesCS3A01G144800 chr7A 80.456 1228 137 51 939 2129 682005693 682004532 0.000000e+00 843.0
33 TraesCS3A01G144800 chr7A 78.716 1090 125 39 2900 3918 682003767 682002714 2.980000e-176 628.0
34 TraesCS3A01G144800 chr7D 79.284 922 109 41 3030 3879 591452300 591451389 1.830000e-158 569.0
35 TraesCS3A01G144800 chr7D 80.868 737 81 31 939 1643 591454634 591453926 4.020000e-145 525.0
36 TraesCS3A01G144800 chr7D 78.563 877 117 36 2150 2990 591453427 591452586 3.130000e-141 512.0
37 TraesCS3A01G144800 chr7D 94.253 87 5 0 4453 4539 406871365 406871279 2.850000e-27 134.0
38 TraesCS3A01G144800 chr7D 92.000 50 2 2 4453 4501 406866890 406866938 8.150000e-08 69.4
39 TraesCS3A01G144800 chr2A 94.512 164 9 0 513 676 753421566 753421729 2.100000e-63 254.0
40 TraesCS3A01G144800 chr2A 95.402 87 4 0 4453 4539 509995190 509995104 6.120000e-29 139.0
41 TraesCS3A01G144800 chr4B 93.976 166 10 0 512 677 461850087 461850252 7.540000e-63 252.0
42 TraesCS3A01G144800 chr4B 97.701 87 2 0 4453 4539 445024091 445024005 2.830000e-32 150.0
43 TraesCS3A01G144800 chr4B 94.253 87 5 0 4453 4539 654074739 654074653 2.850000e-27 134.0
44 TraesCS3A01G144800 chr5B 92.941 170 11 1 508 677 145828178 145828346 3.510000e-61 246.0
45 TraesCS3A01G144800 chr5B 98.851 87 1 0 4453 4539 411102163 411102249 6.080000e-34 156.0
46 TraesCS3A01G144800 chr5B 94.000 50 1 2 4453 4501 589384795 589384843 1.750000e-09 75.0
47 TraesCS3A01G144800 chr5D 94.118 85 5 0 4453 4537 433475820 433475736 3.690000e-26 130.0
48 TraesCS3A01G144800 chr5D 92.308 52 2 2 4451 4501 433459028 433459078 6.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G144800 chr3A 127270833 127275371 4538 False 8383.000000 8383 100.000000 1 4539 1 chr3A.!!$F2 4538
1 TraesCS3A01G144800 chr3D 120312622 120316100 3478 False 2516.500000 4911 95.090500 772 4231 2 chr3D.!!$F2 3459
2 TraesCS3A01G144800 chr3D 120322936 120326607 3671 False 412.500000 488 93.735000 3909 4452 2 chr3D.!!$F3 543
3 TraesCS3A01G144800 chr3B 172447603 172453709 6106 False 780.616667 2617 93.699500 840 4451 6 chr3B.!!$F2 3611
4 TraesCS3A01G144800 chr2B 304259574 304260086 512 False 909.000000 909 98.641000 1 514 1 chr2B.!!$F1 513
5 TraesCS3A01G144800 chr6A 590113643 590114155 512 False 898.000000 898 98.249000 1 513 1 chr6A.!!$F3 512
6 TraesCS3A01G144800 chr6A 578439880 578440392 512 False 893.000000 893 98.058000 1 514 1 chr6A.!!$F2 513
7 TraesCS3A01G144800 chr6A 488407518 488408031 513 False 878.000000 878 97.476000 1 514 1 chr6A.!!$F1 513
8 TraesCS3A01G144800 chr1A 209394251 209394763 512 False 898.000000 898 98.252000 1 514 1 chr1A.!!$F1 513
9 TraesCS3A01G144800 chr7B 74272484 74272998 514 True 894.000000 894 98.058000 1 514 1 chr7B.!!$R1 513
10 TraesCS3A01G144800 chr7B 672382382 672383238 856 False 697.000000 697 82.074000 939 1789 1 chr7B.!!$F2 850
11 TraesCS3A01G144800 chr7B 672334793 672335649 856 False 686.000000 686 81.849000 939 1789 1 chr7B.!!$F1 850
12 TraesCS3A01G144800 chr4A 647520717 647521231 514 False 894.000000 894 98.058000 1 514 1 chr4A.!!$F1 513
13 TraesCS3A01G144800 chr4A 541686832 541687337 505 True 874.000000 874 97.835000 5 511 1 chr4A.!!$R1 506
14 TraesCS3A01G144800 chr5A 649321581 649322094 513 False 856.000000 856 96.705000 1 514 1 chr5A.!!$F2 513
15 TraesCS3A01G144800 chr7A 682002714 682005693 2979 True 735.500000 843 79.586000 939 3918 2 chr7A.!!$R1 2979
16 TraesCS3A01G144800 chr7D 591451389 591454634 3245 True 535.333333 569 79.571667 939 3879 3 chr7D.!!$R2 2940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 689 0.025767 AGGGAGTATAGGGGAGGGGA 60.026 60.0 0.0 0.0 0.00 4.81 F
739 742 0.041663 GATCGAGCGAGAGAGGTTCG 60.042 60.0 0.0 0.0 40.85 3.95 F
1703 1958 0.462581 TAGCATTGCCCTTCTGCTCG 60.463 55.0 4.7 0.0 44.69 5.03 F
2276 3303 0.687354 ATGTTGCGAGACCTCAACCT 59.313 50.0 0.0 0.0 41.21 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 3024 0.453282 CGGCTGCACGACAAAATCAG 60.453 55.000 0.50 0.00 35.47 2.90 R
2249 3276 1.608025 GGTCTCGCAACATGTTCCAGA 60.608 52.381 8.48 7.29 0.00 3.86 R
3095 4412 0.895100 GCATTCTGTGTGCCTCCCAA 60.895 55.000 0.00 0.00 36.61 4.12 R
4045 5465 0.412244 TGCAGGGTCTGGGTACTAGT 59.588 55.000 0.00 0.00 38.42 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
300 303 0.179000 GAGCCTGGGATCGAACACAT 59.821 55.000 0.00 0.00 0.00 3.21
520 523 9.262358 CACTATTTGCTTTATTAGTACTCCCTC 57.738 37.037 0.00 0.00 0.00 4.30
521 524 8.430431 ACTATTTGCTTTATTAGTACTCCCTCC 58.570 37.037 0.00 0.00 0.00 4.30
522 525 4.931661 TGCTTTATTAGTACTCCCTCCG 57.068 45.455 0.00 0.00 0.00 4.63
523 526 4.284178 TGCTTTATTAGTACTCCCTCCGT 58.716 43.478 0.00 0.00 0.00 4.69
524 527 4.713321 TGCTTTATTAGTACTCCCTCCGTT 59.287 41.667 0.00 0.00 0.00 4.44
525 528 5.163478 TGCTTTATTAGTACTCCCTCCGTTC 60.163 44.000 0.00 0.00 0.00 3.95
526 529 5.738495 GCTTTATTAGTACTCCCTCCGTTCC 60.738 48.000 0.00 0.00 0.00 3.62
527 530 3.684408 ATTAGTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
528 531 4.803329 ATTAGTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
529 532 4.591321 TTAGTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
530 533 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
531 534 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
532 535 3.705072 AGTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
533 536 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
534 537 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
535 538 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
536 539 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
537 540 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
538 541 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
539 542 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
540 543 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
541 544 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
542 545 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
543 546 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
544 547 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
545 548 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
546 549 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
547 550 9.199982 CGTTCCTAAATGTAAGTCTTTGTAGAA 57.800 33.333 0.00 0.00 30.65 2.10
555 558 9.574516 AATGTAAGTCTTTGTAGAAATTCCACT 57.425 29.630 0.00 0.00 30.65 4.00
557 560 9.706691 TGTAAGTCTTTGTAGAAATTCCACTAG 57.293 33.333 0.00 0.00 30.65 2.57
558 561 9.924650 GTAAGTCTTTGTAGAAATTCCACTAGA 57.075 33.333 0.00 0.00 30.65 2.43
560 563 9.442047 AAGTCTTTGTAGAAATTCCACTAGATG 57.558 33.333 0.00 0.00 30.65 2.90
561 564 8.043710 AGTCTTTGTAGAAATTCCACTAGATGG 58.956 37.037 0.00 0.43 40.20 3.51
562 565 7.281100 GTCTTTGTAGAAATTCCACTAGATGGG 59.719 40.741 0.00 0.00 39.65 4.00
571 574 3.577649 CCACTAGATGGGCTACATACG 57.422 52.381 0.00 0.00 45.95 3.06
572 575 2.231478 CCACTAGATGGGCTACATACGG 59.769 54.545 0.00 0.00 45.95 4.02
573 576 3.154710 CACTAGATGGGCTACATACGGA 58.845 50.000 0.00 0.00 40.72 4.69
574 577 3.191581 CACTAGATGGGCTACATACGGAG 59.808 52.174 0.00 0.00 40.72 4.63
575 578 0.969894 AGATGGGCTACATACGGAGC 59.030 55.000 0.00 0.00 40.72 4.70
576 579 0.679505 GATGGGCTACATACGGAGCA 59.320 55.000 0.00 0.00 40.72 4.26
577 580 1.070134 GATGGGCTACATACGGAGCAA 59.930 52.381 0.00 0.00 40.72 3.91
578 581 0.906066 TGGGCTACATACGGAGCAAA 59.094 50.000 0.00 0.00 40.64 3.68
579 582 1.279558 TGGGCTACATACGGAGCAAAA 59.720 47.619 0.00 0.00 40.64 2.44
580 583 2.092646 TGGGCTACATACGGAGCAAAAT 60.093 45.455 0.00 0.00 40.64 1.82
581 584 2.290641 GGGCTACATACGGAGCAAAATG 59.709 50.000 0.00 0.00 40.64 2.32
582 585 3.202906 GGCTACATACGGAGCAAAATGA 58.797 45.455 0.00 0.00 40.64 2.57
583 586 3.625764 GGCTACATACGGAGCAAAATGAA 59.374 43.478 0.00 0.00 40.64 2.57
584 587 4.275936 GGCTACATACGGAGCAAAATGAAT 59.724 41.667 0.00 0.00 40.64 2.57
585 588 5.207768 GCTACATACGGAGCAAAATGAATG 58.792 41.667 0.00 0.00 38.62 2.67
586 589 5.007626 GCTACATACGGAGCAAAATGAATGA 59.992 40.000 0.00 0.00 38.62 2.57
587 590 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
588 591 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
589 592 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
590 593 4.376340 ACGGAGCAAAATGAATGAATCC 57.624 40.909 0.00 0.00 0.00 3.01
591 594 3.181497 ACGGAGCAAAATGAATGAATCCG 60.181 43.478 14.85 14.85 45.97 4.18
592 595 3.118542 GGAGCAAAATGAATGAATCCGC 58.881 45.455 0.00 0.00 0.00 5.54
593 596 3.429272 GGAGCAAAATGAATGAATCCGCA 60.429 43.478 0.00 0.00 0.00 5.69
594 597 3.514645 AGCAAAATGAATGAATCCGCAC 58.485 40.909 0.00 0.00 0.00 5.34
595 598 3.194116 AGCAAAATGAATGAATCCGCACT 59.806 39.130 0.00 0.00 0.00 4.40
596 599 3.928375 GCAAAATGAATGAATCCGCACTT 59.072 39.130 0.00 0.00 0.00 3.16
597 600 5.101628 GCAAAATGAATGAATCCGCACTTA 58.898 37.500 0.00 0.00 0.00 2.24
598 601 5.576384 GCAAAATGAATGAATCCGCACTTAA 59.424 36.000 0.00 0.00 0.00 1.85
599 602 6.090628 GCAAAATGAATGAATCCGCACTTAAA 59.909 34.615 0.00 0.00 0.00 1.52
600 603 7.359933 GCAAAATGAATGAATCCGCACTTAAAA 60.360 33.333 0.00 0.00 0.00 1.52
601 604 8.658609 CAAAATGAATGAATCCGCACTTAAAAT 58.341 29.630 0.00 0.00 0.00 1.82
602 605 7.760131 AATGAATGAATCCGCACTTAAAATG 57.240 32.000 0.00 0.00 0.00 2.32
603 606 5.101628 TGAATGAATCCGCACTTAAAATGC 58.898 37.500 1.96 1.96 39.81 3.56
604 607 4.717233 ATGAATCCGCACTTAAAATGCA 57.283 36.364 10.95 0.00 43.57 3.96
605 608 4.717233 TGAATCCGCACTTAAAATGCAT 57.283 36.364 10.95 0.00 43.57 3.96
606 609 4.671377 TGAATCCGCACTTAAAATGCATC 58.329 39.130 0.00 5.04 43.57 3.91
607 610 4.398988 TGAATCCGCACTTAAAATGCATCT 59.601 37.500 0.00 0.00 43.57 2.90
608 611 5.588246 TGAATCCGCACTTAAAATGCATCTA 59.412 36.000 0.00 0.00 43.57 1.98
609 612 6.262944 TGAATCCGCACTTAAAATGCATCTAT 59.737 34.615 0.00 0.00 43.57 1.98
610 613 7.443879 TGAATCCGCACTTAAAATGCATCTATA 59.556 33.333 0.00 0.00 43.57 1.31
611 614 7.928307 ATCCGCACTTAAAATGCATCTATAT 57.072 32.000 0.00 0.00 43.57 0.86
612 615 9.448438 AATCCGCACTTAAAATGCATCTATATA 57.552 29.630 0.00 0.00 43.57 0.86
613 616 8.251750 TCCGCACTTAAAATGCATCTATATAC 57.748 34.615 0.00 0.00 43.57 1.47
614 617 7.875554 TCCGCACTTAAAATGCATCTATATACA 59.124 33.333 0.00 0.00 43.57 2.29
615 618 7.957484 CCGCACTTAAAATGCATCTATATACAC 59.043 37.037 0.00 0.00 43.57 2.90
616 619 7.957484 CGCACTTAAAATGCATCTATATACACC 59.043 37.037 0.00 0.00 43.57 4.16
617 620 8.237267 GCACTTAAAATGCATCTATATACACCC 58.763 37.037 0.00 0.00 42.88 4.61
618 621 8.443160 CACTTAAAATGCATCTATATACACCCG 58.557 37.037 0.00 0.00 0.00 5.28
619 622 8.154856 ACTTAAAATGCATCTATATACACCCGT 58.845 33.333 0.00 0.00 0.00 5.28
620 623 9.647797 CTTAAAATGCATCTATATACACCCGTA 57.352 33.333 0.00 0.00 0.00 4.02
622 625 8.492673 AAAATGCATCTATATACACCCGTATG 57.507 34.615 0.00 0.00 38.79 2.39
623 626 6.791867 ATGCATCTATATACACCCGTATGT 57.208 37.500 0.00 0.00 38.79 2.29
624 627 7.891498 ATGCATCTATATACACCCGTATGTA 57.109 36.000 0.00 0.00 38.79 2.29
625 628 7.706100 TGCATCTATATACACCCGTATGTAA 57.294 36.000 0.65 0.00 38.79 2.41
626 629 8.301252 TGCATCTATATACACCCGTATGTAAT 57.699 34.615 0.65 0.49 38.79 1.89
627 630 8.755028 TGCATCTATATACACCCGTATGTAATT 58.245 33.333 0.65 0.00 38.79 1.40
628 631 9.245962 GCATCTATATACACCCGTATGTAATTC 57.754 37.037 0.65 0.00 38.79 2.17
635 638 6.474140 ACACCCGTATGTAATTCATAGTGA 57.526 37.500 14.99 0.00 39.36 3.41
636 639 6.880484 ACACCCGTATGTAATTCATAGTGAA 58.120 36.000 14.99 0.00 41.09 3.18
637 640 7.332557 ACACCCGTATGTAATTCATAGTGAAA 58.667 34.615 14.99 0.00 40.12 2.69
638 641 7.825270 ACACCCGTATGTAATTCATAGTGAAAA 59.175 33.333 14.99 0.00 40.12 2.29
639 642 8.120465 CACCCGTATGTAATTCATAGTGAAAAC 58.880 37.037 0.00 0.19 40.12 2.43
640 643 7.281549 ACCCGTATGTAATTCATAGTGAAAACC 59.718 37.037 0.00 0.00 40.12 3.27
641 644 7.255001 CCCGTATGTAATTCATAGTGAAAACCC 60.255 40.741 0.00 0.00 40.12 4.11
642 645 7.497909 CCGTATGTAATTCATAGTGAAAACCCT 59.502 37.037 0.00 0.00 40.12 4.34
643 646 9.537192 CGTATGTAATTCATAGTGAAAACCCTA 57.463 33.333 0.00 0.00 40.12 3.53
670 673 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
671 674 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
672 675 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
673 676 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
674 677 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
675 678 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
676 679 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
677 680 7.957992 ATATTTAGGAACGGAGGGAGTATAG 57.042 40.000 0.00 0.00 0.00 1.31
678 681 2.679429 AGGAACGGAGGGAGTATAGG 57.321 55.000 0.00 0.00 0.00 2.57
679 682 1.147399 AGGAACGGAGGGAGTATAGGG 59.853 57.143 0.00 0.00 0.00 3.53
680 683 1.630223 GAACGGAGGGAGTATAGGGG 58.370 60.000 0.00 0.00 0.00 4.79
681 684 1.146566 GAACGGAGGGAGTATAGGGGA 59.853 57.143 0.00 0.00 0.00 4.81
682 685 0.778720 ACGGAGGGAGTATAGGGGAG 59.221 60.000 0.00 0.00 0.00 4.30
683 686 0.039911 CGGAGGGAGTATAGGGGAGG 59.960 65.000 0.00 0.00 0.00 4.30
684 687 0.414231 GGAGGGAGTATAGGGGAGGG 59.586 65.000 0.00 0.00 0.00 4.30
685 688 0.414231 GAGGGAGTATAGGGGAGGGG 59.586 65.000 0.00 0.00 0.00 4.79
686 689 0.025767 AGGGAGTATAGGGGAGGGGA 60.026 60.000 0.00 0.00 0.00 4.81
687 690 0.872449 GGGAGTATAGGGGAGGGGAA 59.128 60.000 0.00 0.00 0.00 3.97
688 691 1.203326 GGGAGTATAGGGGAGGGGAAG 60.203 61.905 0.00 0.00 0.00 3.46
689 692 1.793902 GGAGTATAGGGGAGGGGAAGA 59.206 57.143 0.00 0.00 0.00 2.87
690 693 2.181642 GGAGTATAGGGGAGGGGAAGAA 59.818 54.545 0.00 0.00 0.00 2.52
691 694 3.512496 GAGTATAGGGGAGGGGAAGAAG 58.488 54.545 0.00 0.00 0.00 2.85
692 695 2.872945 AGTATAGGGGAGGGGAAGAAGT 59.127 50.000 0.00 0.00 0.00 3.01
693 696 4.067549 AGTATAGGGGAGGGGAAGAAGTA 58.932 47.826 0.00 0.00 0.00 2.24
694 697 3.639625 ATAGGGGAGGGGAAGAAGTAG 57.360 52.381 0.00 0.00 0.00 2.57
695 698 0.343726 AGGGGAGGGGAAGAAGTAGG 59.656 60.000 0.00 0.00 0.00 3.18
696 699 0.694783 GGGGAGGGGAAGAAGTAGGG 60.695 65.000 0.00 0.00 0.00 3.53
697 700 0.342313 GGGAGGGGAAGAAGTAGGGA 59.658 60.000 0.00 0.00 0.00 4.20
698 701 1.274242 GGGAGGGGAAGAAGTAGGGAA 60.274 57.143 0.00 0.00 0.00 3.97
699 702 2.120312 GGAGGGGAAGAAGTAGGGAAG 58.880 57.143 0.00 0.00 0.00 3.46
700 703 2.292984 GGAGGGGAAGAAGTAGGGAAGA 60.293 54.545 0.00 0.00 0.00 2.87
701 704 3.633952 GGAGGGGAAGAAGTAGGGAAGAT 60.634 52.174 0.00 0.00 0.00 2.40
702 705 4.041464 GAGGGGAAGAAGTAGGGAAGATT 58.959 47.826 0.00 0.00 0.00 2.40
703 706 4.449389 AGGGGAAGAAGTAGGGAAGATTT 58.551 43.478 0.00 0.00 0.00 2.17
704 707 4.475381 AGGGGAAGAAGTAGGGAAGATTTC 59.525 45.833 0.00 0.00 0.00 2.17
705 708 4.475381 GGGGAAGAAGTAGGGAAGATTTCT 59.525 45.833 0.00 0.00 0.00 2.52
706 709 5.396996 GGGGAAGAAGTAGGGAAGATTTCTC 60.397 48.000 0.00 0.00 0.00 2.87
707 710 5.353111 GGAAGAAGTAGGGAAGATTTCTCG 58.647 45.833 0.00 0.00 34.56 4.04
708 711 5.127356 GGAAGAAGTAGGGAAGATTTCTCGA 59.873 44.000 0.00 0.00 34.56 4.04
709 712 5.585820 AGAAGTAGGGAAGATTTCTCGAC 57.414 43.478 0.00 0.00 36.20 4.20
710 713 4.403113 AGAAGTAGGGAAGATTTCTCGACC 59.597 45.833 0.00 0.00 36.55 4.79
711 714 2.688958 AGTAGGGAAGATTTCTCGACCG 59.311 50.000 0.00 0.00 36.55 4.79
712 715 1.848652 AGGGAAGATTTCTCGACCGA 58.151 50.000 0.00 0.00 34.56 4.69
713 716 1.751924 AGGGAAGATTTCTCGACCGAG 59.248 52.381 12.77 12.77 43.21 4.63
714 717 1.562017 GGAAGATTTCTCGACCGAGC 58.438 55.000 14.00 1.18 41.71 5.03
715 718 1.192793 GAAGATTTCTCGACCGAGCG 58.807 55.000 14.00 0.00 41.71 5.03
716 719 0.809385 AAGATTTCTCGACCGAGCGA 59.191 50.000 14.00 5.91 41.71 4.93
722 725 2.437895 TCGACCGAGCGAGGTGAT 60.438 61.111 10.85 0.00 46.09 3.06
723 726 2.024871 CGACCGAGCGAGGTGATC 59.975 66.667 10.85 0.00 46.09 2.92
733 736 2.696566 GAGGTGATCGAGCGAGAGA 58.303 57.895 0.00 0.00 0.00 3.10
734 737 0.586319 GAGGTGATCGAGCGAGAGAG 59.414 60.000 0.00 0.00 0.00 3.20
735 738 0.817634 AGGTGATCGAGCGAGAGAGG 60.818 60.000 0.00 0.00 0.00 3.69
736 739 1.098712 GGTGATCGAGCGAGAGAGGT 61.099 60.000 0.00 0.00 0.00 3.85
737 740 0.736053 GTGATCGAGCGAGAGAGGTT 59.264 55.000 0.00 0.00 0.00 3.50
738 741 1.018148 TGATCGAGCGAGAGAGGTTC 58.982 55.000 0.00 0.00 0.00 3.62
739 742 0.041663 GATCGAGCGAGAGAGGTTCG 60.042 60.000 0.00 0.00 40.85 3.95
748 751 3.423996 GAGAGAGGTTCGCTCGTTATT 57.576 47.619 0.00 0.00 33.86 1.40
749 752 3.109619 GAGAGAGGTTCGCTCGTTATTG 58.890 50.000 0.00 0.00 33.86 1.90
750 753 2.159226 AGAGAGGTTCGCTCGTTATTGG 60.159 50.000 0.00 0.00 35.52 3.16
751 754 1.134788 AGAGGTTCGCTCGTTATTGGG 60.135 52.381 0.00 0.00 0.00 4.12
752 755 0.743345 AGGTTCGCTCGTTATTGGGC 60.743 55.000 0.00 0.00 0.00 5.36
753 756 1.712018 GGTTCGCTCGTTATTGGGCC 61.712 60.000 0.00 0.00 0.00 5.80
754 757 1.812093 TTCGCTCGTTATTGGGCCG 60.812 57.895 0.00 0.00 0.00 6.13
755 758 3.937062 CGCTCGTTATTGGGCCGC 61.937 66.667 0.00 0.00 0.00 6.53
756 759 3.583086 GCTCGTTATTGGGCCGCC 61.583 66.667 0.00 0.00 0.00 6.13
757 760 3.269347 CTCGTTATTGGGCCGCCG 61.269 66.667 2.55 0.00 0.00 6.46
833 836 0.533755 ACTGCACCTGTCTGCACTTC 60.534 55.000 0.00 0.00 42.36 3.01
1425 1486 2.095059 GCTGCTAGAATGTTTGTGGGTG 60.095 50.000 0.00 0.00 0.00 4.61
1426 1487 1.885887 TGCTAGAATGTTTGTGGGTGC 59.114 47.619 0.00 0.00 0.00 5.01
1514 1585 5.467705 AGTGTTATTACGTGACTCAGGAAC 58.532 41.667 0.00 0.95 0.00 3.62
1528 1599 0.905357 AGGAACCTCAGGATTCCACG 59.095 55.000 20.85 0.00 45.90 4.94
1577 1648 1.527034 TGCTGTGATCTGTTTGCTCC 58.473 50.000 0.00 0.00 0.00 4.70
1600 1671 7.520798 TCCGAGTACTGAATAGAAGGGTATAA 58.479 38.462 0.00 0.00 0.00 0.98
1605 1676 8.915036 AGTACTGAATAGAAGGGTATAACACTG 58.085 37.037 0.00 0.00 28.25 3.66
1606 1677 7.973048 ACTGAATAGAAGGGTATAACACTGA 57.027 36.000 0.00 0.00 28.25 3.41
1636 1707 6.442541 TCATGTTCTGGGGTTTAGAAGTAA 57.557 37.500 0.00 0.00 35.03 2.24
1637 1708 6.235664 TCATGTTCTGGGGTTTAGAAGTAAC 58.764 40.000 0.00 0.00 35.03 2.50
1686 1764 6.111382 AGTGATGTGAGTCATGAAATGGTAG 58.889 40.000 0.00 0.00 46.73 3.18
1703 1958 0.462581 TAGCATTGCCCTTCTGCTCG 60.463 55.000 4.70 0.00 44.69 5.03
1880 2136 2.031870 GGTTCTTTGTCCCAAGCAGTT 58.968 47.619 0.00 0.00 0.00 3.16
1894 2150 7.542130 GTCCCAAGCAGTTGTATTAATTTCTTG 59.458 37.037 0.00 0.00 30.95 3.02
2164 3191 5.234543 GGGCTTTATTCTACATCGAGAACAC 59.765 44.000 0.00 0.00 38.25 3.32
2169 3196 7.878477 TTATTCTACATCGAGAACACGTTTT 57.122 32.000 0.00 0.00 38.25 2.43
2249 3276 2.464782 TGTCTCAGACAGGATGCTCAT 58.535 47.619 2.36 0.00 42.53 2.90
2267 3294 2.028203 TCATCTGGAACATGTTGCGAGA 60.028 45.455 22.87 23.30 38.20 4.04
2276 3303 0.687354 ATGTTGCGAGACCTCAACCT 59.313 50.000 0.00 0.00 41.21 3.50
2291 3318 8.166726 AGACCTCAACCTCTAAAATTCTTGATT 58.833 33.333 0.00 0.00 0.00 2.57
2369 3397 1.813477 GCATCTAAGCAGAGAAGGGCC 60.813 57.143 0.00 0.00 33.22 5.80
2471 3501 1.544759 GCCTTTCCCGAGTTCCTTTCA 60.545 52.381 0.00 0.00 0.00 2.69
2488 3518 4.262079 CCTTTCACTACAGTCTTCCGAGTT 60.262 45.833 0.00 0.00 0.00 3.01
2602 3636 6.815089 TGCAACCACACTTCTTAAAATTGAT 58.185 32.000 0.00 0.00 0.00 2.57
2612 3646 6.431234 ACTTCTTAAAATTGATTCCGACAGCT 59.569 34.615 0.00 0.00 0.00 4.24
2629 3663 6.452494 GACAGCTAGTCATTACCTTCTACA 57.548 41.667 10.30 0.00 46.77 2.74
2633 3667 8.978472 ACAGCTAGTCATTACCTTCTACAATTA 58.022 33.333 0.00 0.00 0.00 1.40
2639 3673 7.341256 AGTCATTACCTTCTACAATTACCTCGA 59.659 37.037 0.00 0.00 0.00 4.04
2696 3730 5.596361 TGAATAATTGACAGTGGTTGGTTGT 59.404 36.000 0.00 0.00 0.00 3.32
2771 3811 8.557592 TCCAGTATATTCGTATTATCACGTCT 57.442 34.615 0.00 0.00 42.51 4.18
2819 3862 9.233232 GTCTTTGTTTTGAAATAACTCGTCATT 57.767 29.630 0.00 0.00 0.00 2.57
3007 4077 7.067372 CCTGAGAATGCAAGTGTAAATATTCCA 59.933 37.037 0.00 0.00 0.00 3.53
3095 4412 4.273318 AGAAAAGAGTTGACCAAAGCAGT 58.727 39.130 0.00 0.00 0.00 4.40
3137 4457 6.149308 TGCATCGTGTATTTGAGAATTGTTCT 59.851 34.615 0.00 0.00 44.21 3.01
3256 4608 0.740149 TGCTGAAGTTGCTGTTGTGG 59.260 50.000 0.00 0.00 0.00 4.17
3484 4836 5.985530 TGACGAGGATGTTGATGAATATGAC 59.014 40.000 0.00 0.00 0.00 3.06
3485 4837 4.984785 ACGAGGATGTTGATGAATATGACG 59.015 41.667 0.00 0.00 0.00 4.35
3486 4838 5.221244 ACGAGGATGTTGATGAATATGACGA 60.221 40.000 0.00 0.00 0.00 4.20
3487 4839 5.117745 CGAGGATGTTGATGAATATGACGAC 59.882 44.000 0.00 0.00 0.00 4.34
3488 4840 4.984785 AGGATGTTGATGAATATGACGACG 59.015 41.667 0.00 0.00 0.00 5.12
3489 4841 4.982295 GGATGTTGATGAATATGACGACGA 59.018 41.667 0.00 0.00 0.00 4.20
3490 4842 5.107837 GGATGTTGATGAATATGACGACGAC 60.108 44.000 0.00 0.00 0.00 4.34
3491 4843 3.789224 TGTTGATGAATATGACGACGACG 59.211 43.478 5.58 5.58 45.75 5.12
3492 4844 3.955771 TGATGAATATGACGACGACGA 57.044 42.857 15.32 0.00 42.66 4.20
3493 4845 3.614588 TGATGAATATGACGACGACGAC 58.385 45.455 15.32 8.68 42.66 4.34
3494 4846 2.081336 TGAATATGACGACGACGACG 57.919 50.000 17.60 17.60 42.66 5.12
3495 4847 1.660104 TGAATATGACGACGACGACGA 59.340 47.619 25.15 5.17 42.66 4.20
3496 4848 2.025583 GAATATGACGACGACGACGAC 58.974 52.381 25.15 19.21 42.66 4.34
3527 4891 1.329906 ACGATGACGAGTACGATGTCC 59.670 52.381 11.09 0.00 42.66 4.02
3639 5032 3.733443 ACCATTGGACTTTGCTGTTTC 57.267 42.857 10.37 0.00 0.00 2.78
3655 5049 4.307432 CTGTTTCTCGAAAGAACCTAGCA 58.693 43.478 0.00 0.00 41.23 3.49
3664 5058 4.084328 CGAAAGAACCTAGCACACTTGAAG 60.084 45.833 0.00 0.00 0.00 3.02
3682 5076 4.059008 GAAGTCTGACTTCGCATGTTTC 57.941 45.455 28.73 9.23 44.22 2.78
3727 5138 3.475566 ACCCATGATCTGATTGGTACG 57.524 47.619 7.42 0.00 0.00 3.67
3775 5191 6.018180 GTGGTACTTACTTTCTTTGTCAGTGG 60.018 42.308 0.00 0.00 0.00 4.00
4045 5465 2.126385 CAACGCACGCCCGTAGTA 60.126 61.111 1.25 0.00 41.16 1.82
4046 5466 2.126346 AACGCACGCCCGTAGTAC 60.126 61.111 1.25 0.00 41.16 2.73
4068 5488 0.535797 GTACCCAGACCCTGCAGTAC 59.464 60.000 13.81 2.91 34.82 2.73
4088 5508 7.331934 GCAGTACTGTGTTCATCTAAAATCTCA 59.668 37.037 23.44 0.00 0.00 3.27
4123 5543 1.695242 TGGTAAAGGCTTGAGTTCCGA 59.305 47.619 0.00 0.00 0.00 4.55
4173 5593 2.568623 AGGCACCTCAAATTTCTCGT 57.431 45.000 0.00 0.00 0.00 4.18
4247 8804 5.445964 TCTTTGGGGCTTAGTTCATATTCC 58.554 41.667 0.00 0.00 0.00 3.01
4299 8856 0.742990 CCCGAAGTAAATGGCAGCGA 60.743 55.000 0.00 0.00 0.00 4.93
4303 8860 2.927477 CGAAGTAAATGGCAGCGAGTTA 59.073 45.455 0.00 0.00 0.00 2.24
4393 10791 9.163903 GAAGTGAAATTCTCTTTCTTCTTTTCG 57.836 33.333 11.02 0.00 31.20 3.46
4452 10850 0.820891 AGCCACTGCAGTGTTCAAGG 60.821 55.000 37.55 25.69 44.21 3.61
4453 10851 0.819259 GCCACTGCAGTGTTCAAGGA 60.819 55.000 37.55 0.00 44.21 3.36
4454 10852 1.233019 CCACTGCAGTGTTCAAGGAG 58.767 55.000 37.55 20.49 44.21 3.69
4455 10853 1.475751 CCACTGCAGTGTTCAAGGAGT 60.476 52.381 37.55 3.49 44.21 3.85
4456 10854 2.224281 CCACTGCAGTGTTCAAGGAGTA 60.224 50.000 37.55 0.00 44.21 2.59
4457 10855 2.802816 CACTGCAGTGTTCAAGGAGTAC 59.197 50.000 34.04 0.00 40.96 2.73
4458 10856 2.434336 ACTGCAGTGTTCAAGGAGTACA 59.566 45.455 20.97 0.00 31.95 2.90
4459 10857 3.071602 ACTGCAGTGTTCAAGGAGTACAT 59.928 43.478 20.97 0.00 31.95 2.29
4460 10858 4.283467 ACTGCAGTGTTCAAGGAGTACATA 59.717 41.667 20.97 0.00 31.95 2.29
4461 10859 5.046304 ACTGCAGTGTTCAAGGAGTACATAT 60.046 40.000 20.97 0.00 31.95 1.78
4462 10860 5.419542 TGCAGTGTTCAAGGAGTACATATC 58.580 41.667 0.00 0.00 29.93 1.63
4463 10861 5.187772 TGCAGTGTTCAAGGAGTACATATCT 59.812 40.000 0.00 0.00 29.93 1.98
4464 10862 5.521735 GCAGTGTTCAAGGAGTACATATCTG 59.478 44.000 0.00 0.00 29.93 2.90
4465 10863 6.045318 CAGTGTTCAAGGAGTACATATCTGG 58.955 44.000 0.00 0.00 29.93 3.86
4466 10864 5.721960 AGTGTTCAAGGAGTACATATCTGGT 59.278 40.000 0.00 0.00 29.93 4.00
4467 10865 5.812642 GTGTTCAAGGAGTACATATCTGGTG 59.187 44.000 0.00 0.00 29.93 4.17
4468 10866 5.104941 TGTTCAAGGAGTACATATCTGGTGG 60.105 44.000 0.00 0.00 0.00 4.61
4469 10867 4.878968 TCAAGGAGTACATATCTGGTGGA 58.121 43.478 0.00 0.00 0.00 4.02
4470 10868 5.277250 TCAAGGAGTACATATCTGGTGGAA 58.723 41.667 0.00 0.00 0.00 3.53
4471 10869 5.724370 TCAAGGAGTACATATCTGGTGGAAA 59.276 40.000 0.00 0.00 0.00 3.13
4472 10870 5.615925 AGGAGTACATATCTGGTGGAAAC 57.384 43.478 0.00 0.00 0.00 2.78
4473 10871 4.409247 AGGAGTACATATCTGGTGGAAACC 59.591 45.833 0.00 0.00 0.00 3.27
4474 10872 4.163458 GGAGTACATATCTGGTGGAAACCA 59.837 45.833 0.00 0.00 38.25 3.67
4494 10892 4.563337 CACATATTCAGTGGAAGCATGG 57.437 45.455 0.00 0.00 36.25 3.66
4495 10893 4.201657 CACATATTCAGTGGAAGCATGGA 58.798 43.478 0.00 0.00 36.25 3.41
4496 10894 4.641541 CACATATTCAGTGGAAGCATGGAA 59.358 41.667 0.00 0.00 36.25 3.53
4497 10895 5.125900 CACATATTCAGTGGAAGCATGGAAA 59.874 40.000 0.00 0.00 36.25 3.13
4498 10896 5.126061 ACATATTCAGTGGAAGCATGGAAAC 59.874 40.000 0.00 0.00 36.25 2.78
4499 10897 2.957402 TCAGTGGAAGCATGGAAACT 57.043 45.000 0.00 0.00 0.00 2.66
4500 10898 3.228188 TCAGTGGAAGCATGGAAACTT 57.772 42.857 0.00 0.00 0.00 2.66
4501 10899 3.149196 TCAGTGGAAGCATGGAAACTTC 58.851 45.455 0.00 0.00 41.28 3.01
4502 10900 2.886523 CAGTGGAAGCATGGAAACTTCA 59.113 45.455 11.40 0.00 43.32 3.02
4503 10901 3.508793 CAGTGGAAGCATGGAAACTTCAT 59.491 43.478 11.40 0.00 43.32 2.57
4504 10902 3.760684 AGTGGAAGCATGGAAACTTCATC 59.239 43.478 11.40 5.34 43.32 2.92
4505 10903 3.091545 TGGAAGCATGGAAACTTCATCC 58.908 45.455 11.40 0.00 43.32 3.51
4506 10904 3.245371 TGGAAGCATGGAAACTTCATCCT 60.245 43.478 11.40 0.00 43.32 3.24
4507 10905 3.129988 GGAAGCATGGAAACTTCATCCTG 59.870 47.826 11.40 0.00 43.32 3.86
4508 10906 3.446442 AGCATGGAAACTTCATCCTGT 57.554 42.857 0.00 0.00 37.85 4.00
4509 10907 3.087031 AGCATGGAAACTTCATCCTGTG 58.913 45.455 0.00 0.00 37.85 3.66
4510 10908 2.416431 GCATGGAAACTTCATCCTGTGC 60.416 50.000 0.00 7.42 39.89 4.57
4511 10909 1.909700 TGGAAACTTCATCCTGTGCC 58.090 50.000 0.00 0.00 37.85 5.01
4512 10910 0.804989 GGAAACTTCATCCTGTGCCG 59.195 55.000 0.00 0.00 33.98 5.69
4513 10911 1.523758 GAAACTTCATCCTGTGCCGT 58.476 50.000 0.00 0.00 0.00 5.68
4514 10912 1.880027 GAAACTTCATCCTGTGCCGTT 59.120 47.619 0.00 0.00 0.00 4.44
4515 10913 1.238439 AACTTCATCCTGTGCCGTTG 58.762 50.000 0.00 0.00 0.00 4.10
4516 10914 0.606401 ACTTCATCCTGTGCCGTTGG 60.606 55.000 0.00 0.00 0.00 3.77
4517 10915 0.321564 CTTCATCCTGTGCCGTTGGA 60.322 55.000 0.00 0.00 0.00 3.53
4518 10916 0.327924 TTCATCCTGTGCCGTTGGAT 59.672 50.000 0.00 0.00 40.85 3.41
4519 10917 1.199615 TCATCCTGTGCCGTTGGATA 58.800 50.000 0.00 0.00 38.41 2.59
4520 10918 1.138859 TCATCCTGTGCCGTTGGATAG 59.861 52.381 0.00 0.00 38.41 2.08
4521 10919 0.469917 ATCCTGTGCCGTTGGATAGG 59.530 55.000 0.00 0.00 38.66 2.57
4522 10920 0.616395 TCCTGTGCCGTTGGATAGGA 60.616 55.000 0.00 0.00 32.25 2.94
4523 10921 0.251916 CCTGTGCCGTTGGATAGGAA 59.748 55.000 0.00 0.00 0.00 3.36
4524 10922 1.656652 CTGTGCCGTTGGATAGGAAG 58.343 55.000 0.00 0.00 0.00 3.46
4525 10923 0.981183 TGTGCCGTTGGATAGGAAGT 59.019 50.000 0.00 0.00 0.00 3.01
4526 10924 1.338674 TGTGCCGTTGGATAGGAAGTG 60.339 52.381 0.00 0.00 0.00 3.16
4527 10925 0.981183 TGCCGTTGGATAGGAAGTGT 59.019 50.000 0.00 0.00 0.00 3.55
4528 10926 1.338674 TGCCGTTGGATAGGAAGTGTG 60.339 52.381 0.00 0.00 0.00 3.82
4529 10927 1.338769 GCCGTTGGATAGGAAGTGTGT 60.339 52.381 0.00 0.00 0.00 3.72
4530 10928 2.346803 CCGTTGGATAGGAAGTGTGTG 58.653 52.381 0.00 0.00 0.00 3.82
4531 10929 2.346803 CGTTGGATAGGAAGTGTGTGG 58.653 52.381 0.00 0.00 0.00 4.17
4532 10930 2.289444 CGTTGGATAGGAAGTGTGTGGT 60.289 50.000 0.00 0.00 0.00 4.16
4533 10931 3.074412 GTTGGATAGGAAGTGTGTGGTG 58.926 50.000 0.00 0.00 0.00 4.17
4534 10932 2.334977 TGGATAGGAAGTGTGTGGTGT 58.665 47.619 0.00 0.00 0.00 4.16
4535 10933 2.038426 TGGATAGGAAGTGTGTGGTGTG 59.962 50.000 0.00 0.00 0.00 3.82
4536 10934 2.301870 GGATAGGAAGTGTGTGGTGTGA 59.698 50.000 0.00 0.00 0.00 3.58
4537 10935 3.589988 GATAGGAAGTGTGTGGTGTGAG 58.410 50.000 0.00 0.00 0.00 3.51
4538 10936 1.496060 AGGAAGTGTGTGGTGTGAGA 58.504 50.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.474920 TCGAAAGCATAAAATGTTCTTGATTTT 57.525 25.926 0.00 0.00 36.98 1.82
300 303 5.104900 GCTTTAATCCTCCAGGTAAGAGACA 60.105 44.000 0.00 0.00 36.34 3.41
514 517 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
515 518 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
516 519 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
517 520 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
518 521 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
519 522 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
520 523 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
521 524 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
529 532 9.574516 AGTGGAATTTCTACAAAGACTTACATT 57.425 29.630 14.38 0.00 29.47 2.71
531 534 9.706691 CTAGTGGAATTTCTACAAAGACTTACA 57.293 33.333 14.38 0.00 29.47 2.41
532 535 9.924650 TCTAGTGGAATTTCTACAAAGACTTAC 57.075 33.333 14.38 0.00 29.47 2.34
534 537 9.442047 CATCTAGTGGAATTTCTACAAAGACTT 57.558 33.333 14.38 2.08 29.78 3.01
552 555 3.154710 TCCGTATGTAGCCCATCTAGTG 58.845 50.000 0.00 0.00 34.86 2.74
553 556 3.422796 CTCCGTATGTAGCCCATCTAGT 58.577 50.000 0.00 0.00 34.86 2.57
554 557 2.164624 GCTCCGTATGTAGCCCATCTAG 59.835 54.545 0.00 0.00 34.86 2.43
555 558 2.168496 GCTCCGTATGTAGCCCATCTA 58.832 52.381 0.00 0.00 34.86 1.98
556 559 0.969894 GCTCCGTATGTAGCCCATCT 59.030 55.000 0.00 0.00 34.86 2.90
557 560 0.679505 TGCTCCGTATGTAGCCCATC 59.320 55.000 0.00 0.00 37.97 3.51
558 561 1.128200 TTGCTCCGTATGTAGCCCAT 58.872 50.000 0.00 0.00 37.97 4.00
559 562 0.906066 TTTGCTCCGTATGTAGCCCA 59.094 50.000 0.00 0.00 37.97 5.36
560 563 2.032680 TTTTGCTCCGTATGTAGCCC 57.967 50.000 0.00 0.00 37.97 5.19
561 564 3.202906 TCATTTTGCTCCGTATGTAGCC 58.797 45.455 0.00 0.00 37.97 3.93
562 565 4.875544 TTCATTTTGCTCCGTATGTAGC 57.124 40.909 0.00 0.00 39.25 3.58
563 566 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
564 567 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
565 568 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
566 569 5.916883 GGATTCATTCATTTTGCTCCGTATG 59.083 40.000 0.00 0.00 0.00 2.39
567 570 5.277974 CGGATTCATTCATTTTGCTCCGTAT 60.278 40.000 0.00 0.00 39.53 3.06
568 571 4.035091 CGGATTCATTCATTTTGCTCCGTA 59.965 41.667 0.00 0.00 39.53 4.02
569 572 3.181497 CGGATTCATTCATTTTGCTCCGT 60.181 43.478 0.00 0.00 39.53 4.69
570 573 3.365832 CGGATTCATTCATTTTGCTCCG 58.634 45.455 0.00 0.00 38.51 4.63
571 574 3.118542 GCGGATTCATTCATTTTGCTCC 58.881 45.455 0.00 0.00 0.00 4.70
572 575 3.549070 GTGCGGATTCATTCATTTTGCTC 59.451 43.478 0.00 0.00 0.00 4.26
573 576 3.194116 AGTGCGGATTCATTCATTTTGCT 59.806 39.130 0.00 0.00 0.00 3.91
574 577 3.514645 AGTGCGGATTCATTCATTTTGC 58.485 40.909 0.00 0.00 0.00 3.68
575 578 7.579589 TTTAAGTGCGGATTCATTCATTTTG 57.420 32.000 0.00 0.00 0.00 2.44
576 579 8.658609 CATTTTAAGTGCGGATTCATTCATTTT 58.341 29.630 0.00 0.00 0.00 1.82
577 580 7.201548 GCATTTTAAGTGCGGATTCATTCATTT 60.202 33.333 0.00 0.00 32.29 2.32
578 581 6.256321 GCATTTTAAGTGCGGATTCATTCATT 59.744 34.615 0.00 0.00 32.29 2.57
579 582 5.750067 GCATTTTAAGTGCGGATTCATTCAT 59.250 36.000 0.00 0.00 32.29 2.57
580 583 5.101628 GCATTTTAAGTGCGGATTCATTCA 58.898 37.500 0.00 0.00 32.29 2.57
581 584 5.101628 TGCATTTTAAGTGCGGATTCATTC 58.898 37.500 7.87 0.00 45.37 2.67
582 585 5.070770 TGCATTTTAAGTGCGGATTCATT 57.929 34.783 7.87 0.00 45.37 2.57
583 586 4.717233 TGCATTTTAAGTGCGGATTCAT 57.283 36.364 7.87 0.00 45.37 2.57
584 587 4.398988 AGATGCATTTTAAGTGCGGATTCA 59.601 37.500 0.00 0.00 45.37 2.57
585 588 4.925068 AGATGCATTTTAAGTGCGGATTC 58.075 39.130 0.00 3.04 45.37 2.52
586 589 4.989279 AGATGCATTTTAAGTGCGGATT 57.011 36.364 0.00 0.00 45.37 3.01
587 590 7.928307 ATATAGATGCATTTTAAGTGCGGAT 57.072 32.000 0.00 0.00 45.37 4.18
588 591 7.875554 TGTATATAGATGCATTTTAAGTGCGGA 59.124 33.333 0.00 0.00 45.37 5.54
589 592 7.957484 GTGTATATAGATGCATTTTAAGTGCGG 59.043 37.037 0.00 0.00 45.37 5.69
590 593 7.957484 GGTGTATATAGATGCATTTTAAGTGCG 59.043 37.037 0.00 0.00 45.37 5.34
591 594 8.237267 GGGTGTATATAGATGCATTTTAAGTGC 58.763 37.037 0.00 5.47 42.81 4.40
592 595 8.443160 CGGGTGTATATAGATGCATTTTAAGTG 58.557 37.037 0.00 0.00 29.77 3.16
593 596 8.154856 ACGGGTGTATATAGATGCATTTTAAGT 58.845 33.333 0.00 0.00 29.77 2.24
594 597 8.547967 ACGGGTGTATATAGATGCATTTTAAG 57.452 34.615 0.00 0.00 29.77 1.85
596 599 9.594478 CATACGGGTGTATATAGATGCATTTTA 57.406 33.333 0.00 0.00 39.28 1.52
597 600 8.100791 ACATACGGGTGTATATAGATGCATTTT 58.899 33.333 0.00 0.00 39.28 1.82
598 601 7.620880 ACATACGGGTGTATATAGATGCATTT 58.379 34.615 0.00 0.00 39.28 2.32
599 602 7.182817 ACATACGGGTGTATATAGATGCATT 57.817 36.000 0.00 0.00 39.28 3.56
600 603 6.791867 ACATACGGGTGTATATAGATGCAT 57.208 37.500 0.00 0.00 39.28 3.96
601 604 7.706100 TTACATACGGGTGTATATAGATGCA 57.294 36.000 0.00 0.00 39.28 3.96
602 605 9.245962 GAATTACATACGGGTGTATATAGATGC 57.754 37.037 3.47 0.00 39.28 3.91
609 612 9.299465 TCACTATGAATTACATACGGGTGTATA 57.701 33.333 3.47 0.00 39.28 1.47
610 613 8.185506 TCACTATGAATTACATACGGGTGTAT 57.814 34.615 3.47 0.00 42.03 2.29
611 614 7.585579 TCACTATGAATTACATACGGGTGTA 57.414 36.000 0.00 0.00 40.07 2.90
612 615 6.474140 TCACTATGAATTACATACGGGTGT 57.526 37.500 0.00 0.66 40.07 4.16
613 616 7.780008 TTTCACTATGAATTACATACGGGTG 57.220 36.000 0.00 0.00 36.11 4.61
614 617 7.281549 GGTTTTCACTATGAATTACATACGGGT 59.718 37.037 0.00 0.00 36.11 5.28
615 618 7.255001 GGGTTTTCACTATGAATTACATACGGG 60.255 40.741 0.00 0.00 36.11 5.28
616 619 7.497909 AGGGTTTTCACTATGAATTACATACGG 59.502 37.037 0.00 0.00 36.11 4.02
617 620 8.433421 AGGGTTTTCACTATGAATTACATACG 57.567 34.615 0.00 0.00 36.11 3.06
644 647 8.645110 CCCTCCGTTCCTAAATATAAGTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
645 648 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
646 649 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
647 650 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
648 651 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
649 652 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
650 653 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
651 654 9.471702 CTATACTCCCTCCGTTCCTAAATATAA 57.528 37.037 0.00 0.00 0.00 0.98
652 655 8.057623 CCTATACTCCCTCCGTTCCTAAATATA 58.942 40.741 0.00 0.00 0.00 0.86
653 656 6.896307 CCTATACTCCCTCCGTTCCTAAATAT 59.104 42.308 0.00 0.00 0.00 1.28
654 657 6.251471 CCTATACTCCCTCCGTTCCTAAATA 58.749 44.000 0.00 0.00 0.00 1.40
655 658 5.085219 CCTATACTCCCTCCGTTCCTAAAT 58.915 45.833 0.00 0.00 0.00 1.40
656 659 4.477249 CCTATACTCCCTCCGTTCCTAAA 58.523 47.826 0.00 0.00 0.00 1.85
657 660 3.181425 CCCTATACTCCCTCCGTTCCTAA 60.181 52.174 0.00 0.00 0.00 2.69
658 661 2.377869 CCCTATACTCCCTCCGTTCCTA 59.622 54.545 0.00 0.00 0.00 2.94
659 662 1.147399 CCCTATACTCCCTCCGTTCCT 59.853 57.143 0.00 0.00 0.00 3.36
660 663 1.630223 CCCTATACTCCCTCCGTTCC 58.370 60.000 0.00 0.00 0.00 3.62
661 664 1.146566 TCCCCTATACTCCCTCCGTTC 59.853 57.143 0.00 0.00 0.00 3.95
662 665 1.147399 CTCCCCTATACTCCCTCCGTT 59.853 57.143 0.00 0.00 0.00 4.44
663 666 0.778720 CTCCCCTATACTCCCTCCGT 59.221 60.000 0.00 0.00 0.00 4.69
664 667 0.039911 CCTCCCCTATACTCCCTCCG 59.960 65.000 0.00 0.00 0.00 4.63
665 668 0.414231 CCCTCCCCTATACTCCCTCC 59.586 65.000 0.00 0.00 0.00 4.30
666 669 0.414231 CCCCTCCCCTATACTCCCTC 59.586 65.000 0.00 0.00 0.00 4.30
667 670 0.025767 TCCCCTCCCCTATACTCCCT 60.026 60.000 0.00 0.00 0.00 4.20
668 671 0.872449 TTCCCCTCCCCTATACTCCC 59.128 60.000 0.00 0.00 0.00 4.30
669 672 1.793902 TCTTCCCCTCCCCTATACTCC 59.206 57.143 0.00 0.00 0.00 3.85
670 673 3.116668 ACTTCTTCCCCTCCCCTATACTC 60.117 52.174 0.00 0.00 0.00 2.59
671 674 2.872945 ACTTCTTCCCCTCCCCTATACT 59.127 50.000 0.00 0.00 0.00 2.12
672 675 3.347759 ACTTCTTCCCCTCCCCTATAC 57.652 52.381 0.00 0.00 0.00 1.47
673 676 3.405114 CCTACTTCTTCCCCTCCCCTATA 59.595 52.174 0.00 0.00 0.00 1.31
674 677 2.182536 CCTACTTCTTCCCCTCCCCTAT 59.817 54.545 0.00 0.00 0.00 2.57
675 678 1.579191 CCTACTTCTTCCCCTCCCCTA 59.421 57.143 0.00 0.00 0.00 3.53
676 679 0.343726 CCTACTTCTTCCCCTCCCCT 59.656 60.000 0.00 0.00 0.00 4.79
677 680 0.694783 CCCTACTTCTTCCCCTCCCC 60.695 65.000 0.00 0.00 0.00 4.81
678 681 0.342313 TCCCTACTTCTTCCCCTCCC 59.658 60.000 0.00 0.00 0.00 4.30
679 682 2.120312 CTTCCCTACTTCTTCCCCTCC 58.880 57.143 0.00 0.00 0.00 4.30
680 683 3.117552 TCTTCCCTACTTCTTCCCCTC 57.882 52.381 0.00 0.00 0.00 4.30
681 684 3.805360 ATCTTCCCTACTTCTTCCCCT 57.195 47.619 0.00 0.00 0.00 4.79
682 685 4.475381 AGAAATCTTCCCTACTTCTTCCCC 59.525 45.833 0.00 0.00 0.00 4.81
683 686 5.676552 GAGAAATCTTCCCTACTTCTTCCC 58.323 45.833 0.00 0.00 0.00 3.97
684 687 5.127356 TCGAGAAATCTTCCCTACTTCTTCC 59.873 44.000 0.00 0.00 0.00 3.46
685 688 6.037726 GTCGAGAAATCTTCCCTACTTCTTC 58.962 44.000 0.00 0.00 0.00 2.87
686 689 5.105269 GGTCGAGAAATCTTCCCTACTTCTT 60.105 44.000 0.00 0.00 0.00 2.52
687 690 4.403113 GGTCGAGAAATCTTCCCTACTTCT 59.597 45.833 0.00 0.00 0.00 2.85
688 691 4.684877 GGTCGAGAAATCTTCCCTACTTC 58.315 47.826 0.00 0.00 0.00 3.01
689 692 3.130693 CGGTCGAGAAATCTTCCCTACTT 59.869 47.826 0.00 0.00 0.00 2.24
690 693 2.688958 CGGTCGAGAAATCTTCCCTACT 59.311 50.000 0.00 0.00 0.00 2.57
691 694 2.686915 TCGGTCGAGAAATCTTCCCTAC 59.313 50.000 0.00 0.00 0.00 3.18
692 695 2.950309 CTCGGTCGAGAAATCTTCCCTA 59.050 50.000 14.45 0.00 44.53 3.53
693 696 1.751924 CTCGGTCGAGAAATCTTCCCT 59.248 52.381 14.45 0.00 44.53 4.20
694 697 1.803252 GCTCGGTCGAGAAATCTTCCC 60.803 57.143 22.51 0.00 44.53 3.97
695 698 1.562017 GCTCGGTCGAGAAATCTTCC 58.438 55.000 22.51 0.28 44.53 3.46
696 699 1.192793 CGCTCGGTCGAGAAATCTTC 58.807 55.000 22.51 3.66 44.53 2.87
697 700 0.809385 TCGCTCGGTCGAGAAATCTT 59.191 50.000 22.51 0.00 44.53 2.40
698 701 2.478989 TCGCTCGGTCGAGAAATCT 58.521 52.632 22.51 0.00 44.53 2.40
705 708 2.437895 ATCACCTCGCTCGGTCGA 60.438 61.111 0.00 0.00 34.29 4.20
706 709 2.024871 GATCACCTCGCTCGGTCG 59.975 66.667 0.00 0.00 34.29 4.79
707 710 2.024871 CGATCACCTCGCTCGGTC 59.975 66.667 0.00 0.00 41.14 4.79
715 718 0.586319 CTCTCTCGCTCGATCACCTC 59.414 60.000 0.00 0.00 0.00 3.85
716 719 0.817634 CCTCTCTCGCTCGATCACCT 60.818 60.000 0.00 0.00 0.00 4.00
717 720 1.098712 ACCTCTCTCGCTCGATCACC 61.099 60.000 0.00 0.00 0.00 4.02
718 721 0.736053 AACCTCTCTCGCTCGATCAC 59.264 55.000 0.00 0.00 0.00 3.06
719 722 1.018148 GAACCTCTCTCGCTCGATCA 58.982 55.000 0.00 0.00 0.00 2.92
720 723 0.041663 CGAACCTCTCTCGCTCGATC 60.042 60.000 0.00 0.00 0.00 3.69
721 724 2.018544 CGAACCTCTCTCGCTCGAT 58.981 57.895 0.00 0.00 0.00 3.59
722 725 3.487417 CGAACCTCTCTCGCTCGA 58.513 61.111 0.00 0.00 0.00 4.04
728 731 3.109619 CAATAACGAGCGAACCTCTCTC 58.890 50.000 0.00 0.00 38.49 3.20
729 732 2.159226 CCAATAACGAGCGAACCTCTCT 60.159 50.000 0.00 0.00 38.49 3.10
730 733 2.194271 CCAATAACGAGCGAACCTCTC 58.806 52.381 0.00 0.00 38.49 3.20
731 734 1.134788 CCCAATAACGAGCGAACCTCT 60.135 52.381 0.00 0.00 38.49 3.69
732 735 1.287425 CCCAATAACGAGCGAACCTC 58.713 55.000 0.00 0.00 37.22 3.85
733 736 0.743345 GCCCAATAACGAGCGAACCT 60.743 55.000 0.00 0.00 0.00 3.50
734 737 1.712018 GGCCCAATAACGAGCGAACC 61.712 60.000 0.00 0.00 0.00 3.62
735 738 1.719709 GGCCCAATAACGAGCGAAC 59.280 57.895 0.00 0.00 0.00 3.95
736 739 1.812093 CGGCCCAATAACGAGCGAA 60.812 57.895 0.00 0.00 0.00 4.70
737 740 2.202824 CGGCCCAATAACGAGCGA 60.203 61.111 0.00 0.00 0.00 4.93
738 741 3.937062 GCGGCCCAATAACGAGCG 61.937 66.667 0.00 0.00 0.00 5.03
739 742 3.583086 GGCGGCCCAATAACGAGC 61.583 66.667 8.12 0.00 0.00 5.03
740 743 3.269347 CGGCGGCCCAATAACGAG 61.269 66.667 14.55 0.00 0.00 4.18
757 760 2.817396 GAGAACTCGGCTGCTGGC 60.817 66.667 8.89 7.12 40.90 4.85
766 769 1.732259 CCAAAATGGACCGAGAACTCG 59.268 52.381 15.94 15.94 45.90 4.18
767 770 2.779506 ACCAAAATGGACCGAGAACTC 58.220 47.619 2.85 0.00 40.96 3.01
768 771 2.951229 ACCAAAATGGACCGAGAACT 57.049 45.000 2.85 0.00 40.96 3.01
769 772 2.228103 GGAACCAAAATGGACCGAGAAC 59.772 50.000 2.85 0.00 40.96 3.01
770 773 2.510613 GGAACCAAAATGGACCGAGAA 58.489 47.619 2.85 0.00 40.96 2.87
833 836 1.207329 CTTTTCTACCTCTGGACCGGG 59.793 57.143 6.32 0.00 0.00 5.73
936 973 4.854784 CGCGCTCGCTGGCTCTTA 62.855 66.667 5.56 0.00 39.32 2.10
1298 1356 4.630069 CCGAAACACTCATACCAACTTAGG 59.370 45.833 0.00 0.00 0.00 2.69
1408 1469 3.612479 GCAAGCACCCACAAACATTCTAG 60.612 47.826 0.00 0.00 0.00 2.43
1425 1486 2.753296 AGAGCATTCTATCGAGCAAGC 58.247 47.619 0.00 0.00 0.00 4.01
1426 1487 3.919804 GCTAGAGCATTCTATCGAGCAAG 59.080 47.826 0.00 0.00 41.92 4.01
1502 1573 1.633774 TCCTGAGGTTCCTGAGTCAC 58.366 55.000 0.00 0.00 0.00 3.67
1514 1585 1.522569 GACCCGTGGAATCCTGAGG 59.477 63.158 0.00 0.00 0.00 3.86
1577 1648 8.074972 GTGTTATACCCTTCTATTCAGTACTCG 58.925 40.741 0.00 0.00 0.00 4.18
1600 1671 5.243981 CCAGAACATGAAAGATCTCAGTGT 58.756 41.667 0.00 0.00 0.00 3.55
1605 1676 4.227864 ACCCCAGAACATGAAAGATCTC 57.772 45.455 0.00 0.00 0.00 2.75
1606 1677 4.664688 AACCCCAGAACATGAAAGATCT 57.335 40.909 0.00 0.00 0.00 2.75
1636 1707 1.503347 ACTGACCATTTTCCCCAAGGT 59.497 47.619 0.00 0.00 34.76 3.50
1637 1708 2.171003 GACTGACCATTTTCCCCAAGG 58.829 52.381 0.00 0.00 0.00 3.61
1686 1764 2.796651 CGAGCAGAAGGGCAATGC 59.203 61.111 0.00 0.00 40.29 3.56
1703 1958 1.763545 AGAAGGATCGTAGAAAGGGGC 59.236 52.381 0.00 0.00 43.58 5.80
1828 2084 3.334054 AGGTGGGAGAAGCAGGGC 61.334 66.667 0.00 0.00 0.00 5.19
1830 2086 1.920325 TGGAGGTGGGAGAAGCAGG 60.920 63.158 0.00 0.00 0.00 4.85
1880 2136 6.826231 TCTGAATCGCCCAAGAAATTAATACA 59.174 34.615 0.00 0.00 0.00 2.29
2026 2944 2.758736 AGAGTGTTCTCATGGTCAGC 57.241 50.000 0.00 0.00 42.66 4.26
2106 3024 0.453282 CGGCTGCACGACAAAATCAG 60.453 55.000 0.50 0.00 35.47 2.90
2164 3191 4.215399 TCAAGCAATGGGAAGAGTAAAACG 59.785 41.667 0.00 0.00 0.00 3.60
2169 3196 2.991250 GCTCAAGCAATGGGAAGAGTA 58.009 47.619 0.00 0.00 41.59 2.59
2249 3276 1.608025 GGTCTCGCAACATGTTCCAGA 60.608 52.381 8.48 7.29 0.00 3.86
2267 3294 7.309438 GCAATCAAGAATTTTAGAGGTTGAGGT 60.309 37.037 0.00 0.00 0.00 3.85
2276 3303 5.586243 CCTCCTCGCAATCAAGAATTTTAGA 59.414 40.000 0.00 0.00 0.00 2.10
2291 3318 2.359107 CAAAGCAGCCTCCTCGCA 60.359 61.111 0.00 0.00 0.00 5.10
2336 3364 4.635765 TGCTTAGATGCTTGTGGTGAATAC 59.364 41.667 0.00 0.00 0.00 1.89
2338 3366 3.689347 TGCTTAGATGCTTGTGGTGAAT 58.311 40.909 0.00 0.00 0.00 2.57
2443 3473 4.444449 GGAACTCGGGAAAGGCATAATAGT 60.444 45.833 0.00 0.00 0.00 2.12
2471 3501 4.396522 ACAGTAACTCGGAAGACTGTAGT 58.603 43.478 14.24 0.00 40.54 2.73
2518 3548 5.964288 AGAGAGAAAGGATAGCCTGTAGAT 58.036 41.667 0.00 0.00 46.28 1.98
2612 3646 8.627403 CGAGGTAATTGTAGAAGGTAATGACTA 58.373 37.037 0.00 0.00 0.00 2.59
2629 3663 5.424252 TCCCATAAGAAGTGTCGAGGTAATT 59.576 40.000 0.00 0.00 0.00 1.40
2633 3667 2.761208 CTCCCATAAGAAGTGTCGAGGT 59.239 50.000 0.00 0.00 0.00 3.85
2639 3673 7.607991 CACAAACTAATCTCCCATAAGAAGTGT 59.392 37.037 0.00 0.00 0.00 3.55
2696 3730 8.958506 ACTTACATTTACTAAACACACACCAAA 58.041 29.630 0.00 0.00 0.00 3.28
2771 3811 5.667466 ACGGAACTACAGACTTCAAAAGAA 58.333 37.500 0.00 0.00 0.00 2.52
2822 3865 7.903145 ACTGATATAACAGTCACTGTGGTAAA 58.097 34.615 12.33 0.00 46.36 2.01
2823 3866 7.476540 ACTGATATAACAGTCACTGTGGTAA 57.523 36.000 12.33 0.00 46.36 2.85
3007 4077 7.362660 GGTTTTATCAAAGAGTAGCGGGAAAAT 60.363 37.037 0.00 0.00 0.00 1.82
3095 4412 0.895100 GCATTCTGTGTGCCTCCCAA 60.895 55.000 0.00 0.00 36.61 4.12
3137 4457 6.717289 ACATTACTTAACCAGGAGTGCATAA 58.283 36.000 0.00 0.00 0.00 1.90
3256 4608 3.518634 TGCAAAAGTTGACCCTGAAAC 57.481 42.857 0.00 0.00 0.00 2.78
3484 4836 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
3485 4837 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
3486 4838 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
3487 4839 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
3488 4840 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
3489 4841 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
3490 4842 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
3491 4843 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
3492 4844 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
3493 4845 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
3494 4846 1.922220 CATCGTCGTCGTCGTCGTC 60.922 63.158 18.44 5.52 45.27 4.20
3495 4847 2.095282 CATCGTCGTCGTCGTCGT 59.905 61.111 18.44 6.36 45.27 4.34
3496 4848 1.922220 GTCATCGTCGTCGTCGTCG 60.922 63.158 14.18 14.18 46.06 5.12
3497 4849 1.922220 CGTCATCGTCGTCGTCGTC 60.922 63.158 11.41 0.00 38.33 4.20
3498 4850 2.095282 CGTCATCGTCGTCGTCGT 59.905 61.111 11.41 0.00 38.33 4.34
3527 4891 4.464244 TGAGACACCAATCTACTCTTCCTG 59.536 45.833 0.00 0.00 0.00 3.86
3639 5032 3.305398 AGTGTGCTAGGTTCTTTCGAG 57.695 47.619 0.00 0.00 0.00 4.04
3664 5058 2.413453 GGAGAAACATGCGAAGTCAGAC 59.587 50.000 0.00 0.00 0.00 3.51
3682 5076 4.823989 CCTTATTGGAAGCTTACATGGGAG 59.176 45.833 13.36 8.35 38.35 4.30
3775 5191 2.918131 GCAATGCTCTTTCACAACGGAC 60.918 50.000 0.00 0.00 0.00 4.79
3923 5343 2.049063 CGCCTAGCATCCGCCTAC 60.049 66.667 0.00 0.00 39.83 3.18
3966 5386 3.266964 GCATGCAAGGCGACTGAA 58.733 55.556 14.21 0.00 42.68 3.02
4039 5459 3.135530 AGGGTCTGGGTACTAGTACTACG 59.864 52.174 27.71 17.32 38.42 3.51
4041 5461 3.117738 GCAGGGTCTGGGTACTAGTACTA 60.118 52.174 27.71 17.85 38.42 1.82
4042 5462 2.357986 GCAGGGTCTGGGTACTAGTACT 60.358 54.545 27.71 0.00 38.42 2.73
4043 5463 2.030371 GCAGGGTCTGGGTACTAGTAC 58.970 57.143 22.53 22.53 38.42 2.73
4044 5464 1.642238 TGCAGGGTCTGGGTACTAGTA 59.358 52.381 0.00 0.00 38.42 1.82
4045 5465 0.412244 TGCAGGGTCTGGGTACTAGT 59.588 55.000 0.00 0.00 38.42 2.57
4046 5466 1.115467 CTGCAGGGTCTGGGTACTAG 58.885 60.000 5.57 0.00 38.73 2.57
4068 5488 8.954950 AGGTATGAGATTTTAGATGAACACAG 57.045 34.615 0.00 0.00 0.00 3.66
4088 5508 6.954102 AGCCTTTACCAAAAGAAATGAGGTAT 59.046 34.615 0.00 0.00 44.14 2.73
4135 5555 5.124617 GTGCCTAAAAAGAAGGGAGATGAAG 59.875 44.000 0.00 0.00 34.82 3.02
4136 5556 5.010282 GTGCCTAAAAAGAAGGGAGATGAA 58.990 41.667 0.00 0.00 34.82 2.57
4137 5557 4.567747 GGTGCCTAAAAAGAAGGGAGATGA 60.568 45.833 0.00 0.00 34.82 2.92
4173 5593 7.884877 ACATCTAAATCAAGAGTCCACAATTGA 59.115 33.333 13.59 0.00 36.22 2.57
4247 8804 2.246789 GAGCTCGAAAGAAGTCTCACG 58.753 52.381 0.00 0.00 41.32 4.35
4393 10791 4.127907 AGAGGTGGTTTCTCTTCGTTTTC 58.872 43.478 0.00 0.00 38.32 2.29
4473 10871 4.201657 TCCATGCTTCCACTGAATATGTG 58.798 43.478 0.00 0.00 35.39 3.21
4474 10872 4.508551 TCCATGCTTCCACTGAATATGT 57.491 40.909 0.00 0.00 0.00 2.29
4475 10873 5.359009 AGTTTCCATGCTTCCACTGAATATG 59.641 40.000 0.00 0.00 0.00 1.78
4476 10874 5.513233 AGTTTCCATGCTTCCACTGAATAT 58.487 37.500 0.00 0.00 0.00 1.28
4477 10875 4.922206 AGTTTCCATGCTTCCACTGAATA 58.078 39.130 0.00 0.00 0.00 1.75
4478 10876 3.771216 AGTTTCCATGCTTCCACTGAAT 58.229 40.909 0.00 0.00 0.00 2.57
4479 10877 3.228188 AGTTTCCATGCTTCCACTGAA 57.772 42.857 0.00 0.00 0.00 3.02
4480 10878 2.957402 AGTTTCCATGCTTCCACTGA 57.043 45.000 0.00 0.00 0.00 3.41
4481 10879 2.886523 TGAAGTTTCCATGCTTCCACTG 59.113 45.455 7.93 0.00 40.07 3.66
4482 10880 3.228188 TGAAGTTTCCATGCTTCCACT 57.772 42.857 7.93 0.00 40.07 4.00
4483 10881 3.119352 GGATGAAGTTTCCATGCTTCCAC 60.119 47.826 7.93 3.46 40.07 4.02
4484 10882 3.091545 GGATGAAGTTTCCATGCTTCCA 58.908 45.455 7.93 0.00 40.07 3.53
4485 10883 3.129988 CAGGATGAAGTTTCCATGCTTCC 59.870 47.826 7.93 0.00 40.06 3.46
4486 10884 3.760684 ACAGGATGAAGTTTCCATGCTTC 59.239 43.478 0.00 4.40 40.06 3.86
4487 10885 3.508793 CACAGGATGAAGTTTCCATGCTT 59.491 43.478 0.00 0.00 40.06 3.91
4488 10886 3.087031 CACAGGATGAAGTTTCCATGCT 58.913 45.455 0.00 0.00 42.24 3.79
4489 10887 2.416431 GCACAGGATGAAGTTTCCATGC 60.416 50.000 6.96 6.96 39.69 4.06
4490 10888 2.165030 GGCACAGGATGAAGTTTCCATG 59.835 50.000 0.00 0.00 39.69 3.66
4491 10889 2.450476 GGCACAGGATGAAGTTTCCAT 58.550 47.619 0.00 0.00 39.69 3.41
4492 10890 1.881925 CGGCACAGGATGAAGTTTCCA 60.882 52.381 0.00 0.00 39.69 3.53
4493 10891 0.804989 CGGCACAGGATGAAGTTTCC 59.195 55.000 0.00 0.00 39.69 3.13
4494 10892 1.523758 ACGGCACAGGATGAAGTTTC 58.476 50.000 0.00 0.00 39.69 2.78
4495 10893 1.608590 CAACGGCACAGGATGAAGTTT 59.391 47.619 0.00 0.00 39.69 2.66
4496 10894 1.238439 CAACGGCACAGGATGAAGTT 58.762 50.000 0.00 0.00 39.69 2.66
4497 10895 0.606401 CCAACGGCACAGGATGAAGT 60.606 55.000 0.00 0.00 39.69 3.01
4498 10896 0.321564 TCCAACGGCACAGGATGAAG 60.322 55.000 0.00 0.00 39.69 3.02
4499 10897 0.327924 ATCCAACGGCACAGGATGAA 59.672 50.000 0.00 0.00 40.52 2.57
4500 10898 1.138859 CTATCCAACGGCACAGGATGA 59.861 52.381 10.74 0.00 41.97 2.92
4501 10899 1.586422 CTATCCAACGGCACAGGATG 58.414 55.000 10.74 0.23 41.97 3.51
4502 10900 0.469917 CCTATCCAACGGCACAGGAT 59.530 55.000 6.78 6.78 44.09 3.24
4503 10901 0.616395 TCCTATCCAACGGCACAGGA 60.616 55.000 0.00 0.00 35.59 3.86
4504 10902 0.251916 TTCCTATCCAACGGCACAGG 59.748 55.000 0.00 0.00 0.00 4.00
4505 10903 1.066143 ACTTCCTATCCAACGGCACAG 60.066 52.381 0.00 0.00 0.00 3.66
4506 10904 0.981183 ACTTCCTATCCAACGGCACA 59.019 50.000 0.00 0.00 0.00 4.57
4507 10905 1.338769 ACACTTCCTATCCAACGGCAC 60.339 52.381 0.00 0.00 0.00 5.01
4508 10906 0.981183 ACACTTCCTATCCAACGGCA 59.019 50.000 0.00 0.00 0.00 5.69
4509 10907 1.338769 ACACACTTCCTATCCAACGGC 60.339 52.381 0.00 0.00 0.00 5.68
4510 10908 2.346803 CACACACTTCCTATCCAACGG 58.653 52.381 0.00 0.00 0.00 4.44
4511 10909 2.289444 ACCACACACTTCCTATCCAACG 60.289 50.000 0.00 0.00 0.00 4.10
4512 10910 3.074412 CACCACACACTTCCTATCCAAC 58.926 50.000 0.00 0.00 0.00 3.77
4513 10911 2.708861 ACACCACACACTTCCTATCCAA 59.291 45.455 0.00 0.00 0.00 3.53
4514 10912 2.038426 CACACCACACACTTCCTATCCA 59.962 50.000 0.00 0.00 0.00 3.41
4515 10913 2.301870 TCACACCACACACTTCCTATCC 59.698 50.000 0.00 0.00 0.00 2.59
4516 10914 3.258372 TCTCACACCACACACTTCCTATC 59.742 47.826 0.00 0.00 0.00 2.08
4517 10915 3.239449 TCTCACACCACACACTTCCTAT 58.761 45.455 0.00 0.00 0.00 2.57
4518 10916 2.673258 TCTCACACCACACACTTCCTA 58.327 47.619 0.00 0.00 0.00 2.94
4519 10917 1.496060 TCTCACACCACACACTTCCT 58.504 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.