Multiple sequence alignment - TraesCS3A01G144700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G144700 chr3A 100.000 5477 0 0 1 5477 127196809 127191333 0.000000e+00 10115.0
1 TraesCS3A01G144700 chr3A 81.565 2007 220 71 2115 4029 67312845 67310897 0.000000e+00 1519.0
2 TraesCS3A01G144700 chr3A 86.667 660 60 18 1293 1933 67313683 67313033 0.000000e+00 706.0
3 TraesCS3A01G144700 chr3A 81.636 697 95 22 602 1281 67314472 67313792 1.040000e-151 547.0
4 TraesCS3A01G144700 chr3A 88.672 256 22 5 4033 4283 67310864 67310611 6.890000e-79 305.0
5 TraesCS3A01G144700 chr3A 91.304 184 16 0 241 424 353624413 353624596 9.110000e-63 252.0
6 TraesCS3A01G144700 chr3A 92.405 79 5 1 5092 5169 107322528 107322450 1.610000e-20 111.0
7 TraesCS3A01G144700 chr3A 92.105 76 5 1 5092 5166 611157508 611157583 7.500000e-19 106.0
8 TraesCS3A01G144700 chr3A 79.290 169 17 11 972 1140 380915827 380915977 9.710000e-18 102.0
9 TraesCS3A01G144700 chr3A 80.800 125 21 3 4155 4277 661628851 661628728 1.620000e-15 95.3
10 TraesCS3A01G144700 chr3B 94.927 3706 117 27 391 4035 172320446 172316751 0.000000e+00 5736.0
11 TraesCS3A01G144700 chr3B 82.949 997 109 29 2115 3081 92334115 92333150 0.000000e+00 843.0
12 TraesCS3A01G144700 chr3B 86.842 760 59 22 4155 4903 172316747 172316018 0.000000e+00 811.0
13 TraesCS3A01G144700 chr3B 82.293 977 105 39 3119 4035 92332822 92331854 0.000000e+00 784.0
14 TraesCS3A01G144700 chr3B 87.031 640 57 15 1296 1915 92334944 92334311 0.000000e+00 699.0
15 TraesCS3A01G144700 chr3B 80.712 674 88 27 622 1281 92335719 92335074 2.290000e-133 486.0
16 TraesCS3A01G144700 chr3B 87.549 257 21 8 4033 4283 92331827 92331576 2.500000e-73 287.0
17 TraesCS3A01G144700 chr3B 95.122 164 8 0 144 307 172320617 172320454 5.440000e-65 259.0
18 TraesCS3A01G144700 chr3B 91.892 185 14 1 243 426 550641374 550641558 1.960000e-64 257.0
19 TraesCS3A01G144700 chr3B 91.398 186 16 0 239 424 352239657 352239842 7.040000e-64 255.0
20 TraesCS3A01G144700 chr3B 95.370 108 4 1 2 108 172321055 172320948 2.620000e-38 171.0
21 TraesCS3A01G144700 chr3B 82.486 177 16 8 5282 5451 172315689 172315521 2.060000e-29 141.0
22 TraesCS3A01G144700 chr3D 94.609 3506 100 28 1 3451 120294154 120290683 0.000000e+00 5345.0
23 TraesCS3A01G144700 chr3D 82.096 2290 233 93 2115 4283 58301002 58298769 0.000000e+00 1794.0
24 TraesCS3A01G144700 chr3D 88.369 877 70 20 4033 4889 120289838 120288974 0.000000e+00 1026.0
25 TraesCS3A01G144700 chr3D 96.613 561 16 3 3477 4035 120290574 120290015 0.000000e+00 928.0
26 TraesCS3A01G144700 chr3D 86.637 666 58 17 1293 1933 58301849 58301190 0.000000e+00 708.0
27 TraesCS3A01G144700 chr3D 80.851 705 96 26 598 1283 58302652 58301968 8.130000e-143 518.0
28 TraesCS3A01G144700 chr3D 91.892 185 14 1 243 426 422517613 422517797 1.960000e-64 257.0
29 TraesCS3A01G144700 chr3D 91.736 121 4 2 3328 3447 120290683 120290568 4.390000e-36 163.0
30 TraesCS3A01G144700 chr3D 89.565 115 12 0 1408 1522 58306581 58306695 4.420000e-31 147.0
31 TraesCS3A01G144700 chr3D 87.778 90 3 6 5282 5364 120288676 120288588 1.260000e-16 99.0
32 TraesCS3A01G144700 chr6A 92.857 182 13 0 243 424 153373069 153372888 1.170000e-66 265.0
33 TraesCS3A01G144700 chr5B 92.308 182 14 0 244 425 574956625 574956444 5.440000e-65 259.0
34 TraesCS3A01G144700 chr5B 92.105 76 5 1 5092 5166 232576501 232576576 7.500000e-19 106.0
35 TraesCS3A01G144700 chr4D 91.534 189 15 1 236 424 482703438 482703625 5.440000e-65 259.0
36 TraesCS3A01G144700 chr4A 90.155 193 18 1 243 435 681713095 681712904 3.280000e-62 250.0
37 TraesCS3A01G144700 chr6B 81.657 169 24 5 972 1140 96646444 96646605 3.440000e-27 134.0
38 TraesCS3A01G144700 chr6B 90.361 83 6 2 5088 5169 1922802 1922721 2.090000e-19 108.0
39 TraesCS3A01G144700 chr7B 94.737 76 3 1 5092 5166 199999445 199999520 3.470000e-22 117.0
40 TraesCS3A01G144700 chr7A 92.105 76 5 1 5092 5166 618085603 618085528 7.500000e-19 106.0
41 TraesCS3A01G144700 chr4B 91.892 74 5 1 5094 5166 467104570 467104643 9.710000e-18 102.0
42 TraesCS3A01G144700 chr7D 88.158 76 8 1 5091 5166 621953176 621953250 7.560000e-14 89.8
43 TraesCS3A01G144700 chr5D 88.000 75 8 1 5093 5166 237461947 237462021 2.720000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G144700 chr3A 127191333 127196809 5476 True 10115.000000 10115 100.000000 1 5477 1 chr3A.!!$R2 5476
1 TraesCS3A01G144700 chr3A 67310611 67314472 3861 True 769.250000 1519 84.635000 602 4283 4 chr3A.!!$R4 3681
2 TraesCS3A01G144700 chr3B 172315521 172321055 5534 True 1423.600000 5736 90.949400 2 5451 5 chr3B.!!$R2 5449
3 TraesCS3A01G144700 chr3B 92331576 92335719 4143 True 619.800000 843 84.106800 622 4283 5 chr3B.!!$R1 3661
4 TraesCS3A01G144700 chr3D 120288588 120294154 5566 True 1512.200000 5345 91.821000 1 5364 5 chr3D.!!$R2 5363
5 TraesCS3A01G144700 chr3D 58298769 58302652 3883 True 1006.666667 1794 83.194667 598 4283 3 chr3D.!!$R1 3685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 470 0.170561 GATGCTGCTGCTTCCTGTTG 59.829 55.000 17.0 0.0 40.48 3.33 F
1682 2196 0.481128 TGGGGGTTCCAAACTCTTCC 59.519 55.000 0.0 0.0 43.84 3.46 F
2388 2949 0.251341 CCTATGCCAGGTAATGCCCC 60.251 60.000 0.0 0.0 39.91 5.80 F
3830 4892 1.134580 ACATCAGTCCTGGATTCAGCG 60.135 52.381 0.0 0.0 39.61 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2479 2.640184 CATGCCTCTTGAGCAAGATGA 58.360 47.619 16.37 4.68 45.40 2.92 R
2998 3590 3.225104 CATTGGATGATAACCACCTGGG 58.775 50.000 0.00 0.00 44.81 4.45 R
3839 4901 1.763545 GGTCCTGTGTTCCCTATCTCC 59.236 57.143 0.00 0.00 0.00 3.71 R
5057 6359 0.030638 GGAAGCAAAGCAACGCTCAA 59.969 50.000 0.00 0.00 38.25 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 131 5.350091 CCAGAGCTAAGAAGTTAAGTTCAGC 59.650 44.000 22.06 21.00 0.00 4.26
150 447 2.414481 CGATGTCTTTCAGGCACTTCTG 59.586 50.000 0.00 0.00 34.60 3.02
160 457 1.751927 GCACTTCTGGGGGATGCTG 60.752 63.158 0.00 0.00 33.44 4.41
173 470 0.170561 GATGCTGCTGCTTCCTGTTG 59.829 55.000 17.00 0.00 40.48 3.33
254 551 4.051932 CCTACGAAGGGGAGCCTT 57.948 61.111 0.00 0.00 39.48 4.35
257 554 1.972660 CTACGAAGGGGAGCCTTGGG 61.973 65.000 0.00 0.00 31.37 4.12
270 567 1.303317 CTTGGGGCAGCGGTAAAGT 60.303 57.895 0.00 0.00 0.00 2.66
316 613 3.672767 GGGTTAGAGTCCGAGAAACAA 57.327 47.619 0.00 0.00 0.00 2.83
334 631 6.321181 AGAAACAACCTCTTGCAGAAATGTAA 59.679 34.615 0.00 0.00 0.00 2.41
340 637 6.012745 ACCTCTTGCAGAAATGTAAGGAAAT 58.987 36.000 6.30 0.00 33.32 2.17
345 642 7.340232 TCTTGCAGAAATGTAAGGAAATGCTAT 59.660 33.333 6.30 0.00 33.32 2.97
347 644 6.377996 TGCAGAAATGTAAGGAAATGCTATGT 59.622 34.615 0.00 0.00 33.68 2.29
372 669 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
488 812 5.813080 AGAAAGCACCAATATTTCGGTAC 57.187 39.130 0.00 0.00 37.86 3.34
524 848 7.429636 AATTCATTTTTGATGAAACCTGCAG 57.570 32.000 6.78 6.78 40.84 4.41
534 858 2.358898 TGAAACCTGCAGCAAGTTCTTC 59.641 45.455 9.89 5.83 0.00 2.87
563 887 4.567159 GCACCATCTAGTTTCTACCTTTCG 59.433 45.833 0.00 0.00 0.00 3.46
627 951 6.406177 ATGGTTTCATCTTATGAATGCCACAC 60.406 38.462 19.57 8.83 46.92 3.82
757 1085 5.987777 TTTGCATCATTTGACCAAAAGTG 57.012 34.783 0.00 1.26 33.56 3.16
907 1235 2.032799 ACATGACAACGTTTCGCAATGT 59.967 40.909 0.00 2.15 33.16 2.71
1059 1389 6.713762 AGTTGTCACTGAAAATTCCATTCA 57.286 33.333 0.00 0.00 35.60 2.57
1191 1542 2.229543 TGAATTGCACATGAACCAGAGC 59.770 45.455 0.00 0.00 0.00 4.09
1323 1814 4.520492 TGCCAAGACATCCTTTTCTTCTTC 59.480 41.667 0.00 0.00 31.42 2.87
1324 1815 4.764308 GCCAAGACATCCTTTTCTTCTTCT 59.236 41.667 0.00 0.00 31.42 2.85
1325 1816 5.242615 GCCAAGACATCCTTTTCTTCTTCTT 59.757 40.000 0.00 0.00 31.42 2.52
1543 2043 1.779061 ATCCCGGTTCTGTGGCAGTT 61.779 55.000 0.00 0.00 32.61 3.16
1600 2100 7.316544 AGACATTGAACTTGTAAGACGTTTT 57.683 32.000 0.00 0.00 0.00 2.43
1682 2196 0.481128 TGGGGGTTCCAAACTCTTCC 59.519 55.000 0.00 0.00 43.84 3.46
1864 2380 7.010923 GCTGATGATATTCTTGTTTCGAGTTCT 59.989 37.037 0.00 0.00 0.00 3.01
2008 2524 4.586001 ACAAATCCTGCCCATCATATTGAC 59.414 41.667 0.00 0.00 0.00 3.18
2071 2589 7.016153 ACTTACCTGTTTGACCTATTCATCA 57.984 36.000 0.00 0.00 32.84 3.07
2157 2717 6.543831 ACATACATCCATTGGAGTTCTAAAGC 59.456 38.462 11.78 0.00 34.05 3.51
2236 2797 5.637387 AGAAGAGAACTCTGAATTCTTTCGC 59.363 40.000 7.05 6.24 40.36 4.70
2388 2949 0.251341 CCTATGCCAGGTAATGCCCC 60.251 60.000 0.00 0.00 39.91 5.80
2550 3120 7.896383 TCCTTCCCTTTCATGTAATTTATGG 57.104 36.000 0.00 0.00 0.00 2.74
2551 3121 7.647827 TCCTTCCCTTTCATGTAATTTATGGA 58.352 34.615 0.00 0.00 0.00 3.41
2552 3122 7.779798 TCCTTCCCTTTCATGTAATTTATGGAG 59.220 37.037 0.00 2.95 0.00 3.86
2645 3218 4.767409 GCTTTCTTGGGTCCATATTATCCC 59.233 45.833 0.00 0.00 40.26 3.85
2998 3590 1.140312 TAGTGAATGGGATCCCTGCC 58.860 55.000 31.05 18.89 36.94 4.85
3207 4108 4.799564 TGGAACATTTTATCTTGGGTGC 57.200 40.909 0.00 0.00 0.00 5.01
3212 4113 3.194116 ACATTTTATCTTGGGTGCTGCTG 59.806 43.478 0.00 0.00 0.00 4.41
3406 4338 8.798859 ATGCTTATTTATCATCTTTCCGCTAT 57.201 30.769 0.00 0.00 0.00 2.97
3451 4385 4.557496 GCACCAGAAAAATCTCCTGTTCAC 60.557 45.833 0.00 0.00 0.00 3.18
3484 4502 8.398665 GTTATCCATATTTCTGTTTCACCTGAC 58.601 37.037 0.00 0.00 0.00 3.51
3501 4519 4.462834 ACCTGACGTCATCTGATGTTTCTA 59.537 41.667 20.40 0.00 43.73 2.10
3549 4569 3.101437 TCCGAGGGCTGTTATTTCTACA 58.899 45.455 0.00 0.00 0.00 2.74
3830 4892 1.134580 ACATCAGTCCTGGATTCAGCG 60.135 52.381 0.00 0.00 39.61 5.18
3839 4901 1.328680 CTGGATTCAGCGTTTGGATCG 59.671 52.381 0.00 0.00 42.00 3.69
4008 5070 9.542462 TGGTAGCATGACTTTAATTGATAGTAC 57.458 33.333 0.00 0.00 0.00 2.73
4026 5088 7.769044 TGATAGTACTTCTTTTGATAACCAGCC 59.231 37.037 0.00 0.00 0.00 4.85
4027 5089 6.128138 AGTACTTCTTTTGATAACCAGCCT 57.872 37.500 0.00 0.00 0.00 4.58
4030 5092 6.089249 ACTTCTTTTGATAACCAGCCTTTG 57.911 37.500 0.00 0.00 0.00 2.77
4072 5314 7.807680 GCTTACATTTGTTAGCTAGTTCTGTT 58.192 34.615 12.97 0.00 44.52 3.16
4140 5385 0.744414 TCTGCGTCCTATTTGCCTGC 60.744 55.000 0.00 0.00 0.00 4.85
4280 5525 2.551721 CCCAGACCATGATGACATAGGC 60.552 54.545 0.00 0.00 35.09 3.93
4324 5571 5.963176 TTTGCTTGCTGTGATTTATCTCA 57.037 34.783 0.00 0.00 0.00 3.27
4338 5585 7.174599 GTGATTTATCTCAGCTATGAATTGCCT 59.825 37.037 0.00 0.00 34.23 4.75
4385 5632 7.167535 TGAGTTGATGATTTATGTTGAGACCA 58.832 34.615 0.00 0.00 0.00 4.02
4408 5655 5.877012 CAGCTTACTCATTTGTGGTATGTCT 59.123 40.000 0.00 0.00 0.00 3.41
4455 5702 1.811266 CGCCATCAACGGGTCTCAG 60.811 63.158 0.00 0.00 0.00 3.35
4533 5783 4.832266 CCTGGCTAGAGTGTCTATCTCATT 59.168 45.833 0.00 0.00 34.73 2.57
4586 5839 4.142004 GGTAATATCAGACTGGGTGTTCGT 60.142 45.833 1.81 0.00 0.00 3.85
4667 5930 1.604278 GGAATAATCAGCCTTCACCGC 59.396 52.381 0.00 0.00 0.00 5.68
4668 5931 1.604278 GAATAATCAGCCTTCACCGCC 59.396 52.381 0.00 0.00 0.00 6.13
4669 5932 0.532862 ATAATCAGCCTTCACCGCCG 60.533 55.000 0.00 0.00 0.00 6.46
4670 5933 2.587322 TAATCAGCCTTCACCGCCGG 62.587 60.000 0.00 0.00 0.00 6.13
4689 5952 3.945285 CCGGGTAAATTTGCTGTCTACAT 59.055 43.478 6.23 0.00 0.00 2.29
4691 5954 4.201910 CGGGTAAATTTGCTGTCTACATGG 60.202 45.833 6.23 0.00 0.00 3.66
4700 5963 2.159462 GCTGTCTACATGGCTGAAAAGC 60.159 50.000 0.00 2.06 0.00 3.51
4704 5967 4.937620 TGTCTACATGGCTGAAAAGCTTAG 59.062 41.667 0.00 0.00 34.73 2.18
4741 6010 2.158667 TCAAACCTCAGGAACAACCCTC 60.159 50.000 0.00 0.00 40.05 4.30
4766 6035 2.708216 TTGCTGAACAAGTGGACAGA 57.292 45.000 0.00 0.00 33.24 3.41
4767 6036 1.953559 TGCTGAACAAGTGGACAGAC 58.046 50.000 0.00 0.00 32.90 3.51
4768 6037 1.209261 TGCTGAACAAGTGGACAGACA 59.791 47.619 0.00 0.00 32.90 3.41
4769 6038 1.869767 GCTGAACAAGTGGACAGACAG 59.130 52.381 0.00 0.00 32.90 3.51
4780 6049 2.037641 TGGACAGACAGTTCATCTGGTG 59.962 50.000 6.92 0.00 46.60 4.17
4784 6053 3.745480 ACAGACAGTTCATCTGGTGTTGG 60.745 47.826 6.92 0.00 46.60 3.77
4786 6055 7.382667 ACAGACAGTTCATCTGGTGTTGGAA 62.383 44.000 6.92 0.00 46.60 3.53
4793 6062 4.728772 TCATCTGGTGTTGGAACATTTCT 58.271 39.130 0.00 0.00 41.59 2.52
4806 6075 4.216472 GGAACATTTCTTGTCTTCCAGGTC 59.784 45.833 0.00 0.00 37.68 3.85
4809 6078 2.526304 TTCTTGTCTTCCAGGTCGTG 57.474 50.000 0.00 0.00 0.00 4.35
4817 6086 4.602259 CCAGGTCGTGGTGTGCGT 62.602 66.667 3.24 0.00 42.17 5.24
4824 6093 0.816018 TCGTGGTGTGCGTCCAATTT 60.816 50.000 0.00 0.00 36.68 1.82
4827 6096 2.657184 GTGGTGTGCGTCCAATTTAAC 58.343 47.619 0.00 0.00 36.68 2.01
4836 6105 2.093783 CGTCCAATTTAACGTCTCCTGC 59.906 50.000 0.00 0.00 34.30 4.85
4839 6108 2.161609 CCAATTTAACGTCTCCTGCACC 59.838 50.000 0.00 0.00 0.00 5.01
4854 6123 2.929477 ACCGGCCCCGTTCCTTTA 60.929 61.111 0.00 0.00 37.81 1.85
4858 6127 1.408544 CCGGCCCCGTTCCTTTATTTA 60.409 52.381 5.93 0.00 37.81 1.40
4864 6133 5.128171 GGCCCCGTTCCTTTATTTATTTCTT 59.872 40.000 0.00 0.00 0.00 2.52
4865 6134 6.270815 GCCCCGTTCCTTTATTTATTTCTTC 58.729 40.000 0.00 0.00 0.00 2.87
4866 6135 6.096423 GCCCCGTTCCTTTATTTATTTCTTCT 59.904 38.462 0.00 0.00 0.00 2.85
4867 6136 7.681304 GCCCCGTTCCTTTATTTATTTCTTCTC 60.681 40.741 0.00 0.00 0.00 2.87
4869 6138 7.338449 CCCGTTCCTTTATTTATTTCTTCTCCA 59.662 37.037 0.00 0.00 0.00 3.86
4880 6149 2.791347 TCTTCTCCAGAGAGTACGCT 57.209 50.000 0.00 0.00 41.26 5.07
4904 6177 8.379161 GCTGATAGCGTATCATATTTTTGAGAG 58.621 37.037 7.76 0.00 43.66 3.20
4905 6178 9.631452 CTGATAGCGTATCATATTTTTGAGAGA 57.369 33.333 7.76 0.00 43.66 3.10
4906 6179 9.981114 TGATAGCGTATCATATTTTTGAGAGAA 57.019 29.630 4.30 0.00 40.09 2.87
4909 6182 8.092521 AGCGTATCATATTTTTGAGAGAATGG 57.907 34.615 0.00 0.00 0.00 3.16
4912 6185 8.013947 CGTATCATATTTTTGAGAGAATGGCAG 58.986 37.037 0.00 0.00 0.00 4.85
4914 6187 7.943079 TCATATTTTTGAGAGAATGGCAGAA 57.057 32.000 0.00 0.00 0.00 3.02
4916 6189 8.410912 TCATATTTTTGAGAGAATGGCAGAATG 58.589 33.333 0.00 0.00 40.87 2.67
4940 6242 5.278463 GCATAAGGAAGTGAGTTGAGCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
4958 6260 4.321230 GCAAAAGGTTCCAGATAACACAGG 60.321 45.833 0.00 0.00 0.00 4.00
4967 6269 1.899814 AGATAACACAGGCTGGAACGA 59.100 47.619 20.34 0.00 0.00 3.85
4968 6270 2.501723 AGATAACACAGGCTGGAACGAT 59.498 45.455 20.34 5.20 0.00 3.73
4969 6271 2.851263 TAACACAGGCTGGAACGATT 57.149 45.000 20.34 6.00 0.00 3.34
4970 6272 1.981256 AACACAGGCTGGAACGATTT 58.019 45.000 20.34 0.00 0.00 2.17
4973 6275 0.537143 ACAGGCTGGAACGATTTGCA 60.537 50.000 20.34 0.00 0.00 4.08
4980 6282 2.293170 TGGAACGATTTGCAGAACACA 58.707 42.857 0.00 0.00 0.00 3.72
4981 6283 2.685388 TGGAACGATTTGCAGAACACAA 59.315 40.909 0.00 0.00 0.00 3.33
4982 6284 3.129462 TGGAACGATTTGCAGAACACAAA 59.871 39.130 0.00 0.00 40.98 2.83
4983 6285 3.485743 GGAACGATTTGCAGAACACAAAC 59.514 43.478 0.00 0.00 39.65 2.93
5011 6313 0.035036 TCGACAGAGACGGAGACAGT 59.965 55.000 0.00 0.00 0.00 3.55
5012 6314 0.167033 CGACAGAGACGGAGACAGTG 59.833 60.000 0.00 0.00 0.00 3.66
5013 6315 1.524848 GACAGAGACGGAGACAGTGA 58.475 55.000 0.00 0.00 0.00 3.41
5015 6317 2.088423 ACAGAGACGGAGACAGTGATC 58.912 52.381 0.00 0.00 0.00 2.92
5018 6320 0.814457 AGACGGAGACAGTGATCAGC 59.186 55.000 0.00 0.00 0.00 4.26
5019 6321 0.179124 GACGGAGACAGTGATCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
5020 6322 0.613292 ACGGAGACAGTGATCAGCCT 60.613 55.000 0.00 0.00 0.00 4.58
5056 6358 2.877300 GCTGGTGCAGATTTCTGGAGAA 60.877 50.000 9.49 0.00 44.95 2.87
5057 6359 3.618351 CTGGTGCAGATTTCTGGAGAAT 58.382 45.455 9.49 0.00 44.95 2.40
5058 6360 4.015084 CTGGTGCAGATTTCTGGAGAATT 58.985 43.478 9.49 0.00 44.95 2.17
5066 6368 4.394300 AGATTTCTGGAGAATTGAGCGTTG 59.606 41.667 0.00 0.00 33.54 4.10
5072 6374 1.981533 GAGAATTGAGCGTTGCTTTGC 59.018 47.619 0.00 0.00 39.88 3.68
5086 6388 3.238987 TTTGCTTCCAAAGGCCCTT 57.761 47.368 0.00 0.00 36.09 3.95
5087 6389 1.047801 TTTGCTTCCAAAGGCCCTTC 58.952 50.000 0.00 0.00 36.09 3.46
5090 6392 1.253593 GCTTCCAAAGGCCCTTCCAG 61.254 60.000 0.00 0.00 37.29 3.86
5091 6393 0.113190 CTTCCAAAGGCCCTTCCAGT 59.887 55.000 0.00 0.00 37.29 4.00
5092 6394 0.112412 TTCCAAAGGCCCTTCCAGTC 59.888 55.000 0.00 0.00 37.29 3.51
5093 6395 1.675641 CCAAAGGCCCTTCCAGTCG 60.676 63.158 0.00 0.00 37.29 4.18
5094 6396 1.675641 CAAAGGCCCTTCCAGTCGG 60.676 63.158 0.00 0.00 37.29 4.79
5095 6397 2.154074 AAAGGCCCTTCCAGTCGGT 61.154 57.895 0.00 0.00 37.29 4.69
5096 6398 1.716028 AAAGGCCCTTCCAGTCGGTT 61.716 55.000 0.00 0.00 37.29 4.44
5097 6399 1.716028 AAGGCCCTTCCAGTCGGTTT 61.716 55.000 0.00 0.00 37.29 3.27
5098 6400 1.228459 GGCCCTTCCAGTCGGTTTT 60.228 57.895 0.00 0.00 34.01 2.43
5099 6401 1.241990 GGCCCTTCCAGTCGGTTTTC 61.242 60.000 0.00 0.00 34.01 2.29
5100 6402 1.574702 GCCCTTCCAGTCGGTTTTCG 61.575 60.000 0.00 0.00 40.90 3.46
5101 6403 1.574702 CCCTTCCAGTCGGTTTTCGC 61.575 60.000 0.00 0.00 39.05 4.70
5102 6404 1.574702 CCTTCCAGTCGGTTTTCGCC 61.575 60.000 0.00 0.00 39.05 5.54
5103 6405 1.574702 CTTCCAGTCGGTTTTCGCCC 61.575 60.000 0.00 0.00 39.05 6.13
5104 6406 3.419759 CCAGTCGGTTTTCGCCCG 61.420 66.667 0.00 0.00 46.83 6.13
5105 6407 3.419759 CAGTCGGTTTTCGCCCGG 61.420 66.667 0.00 0.00 45.51 5.73
5106 6408 3.932483 AGTCGGTTTTCGCCCGGT 61.932 61.111 0.00 0.00 45.51 5.28
5107 6409 2.974148 GTCGGTTTTCGCCCGGTT 60.974 61.111 0.00 0.00 45.51 4.44
5108 6410 2.203181 TCGGTTTTCGCCCGGTTT 60.203 55.556 0.00 0.00 45.51 3.27
5109 6411 1.823041 TCGGTTTTCGCCCGGTTTT 60.823 52.632 0.00 0.00 45.51 2.43
5110 6412 1.370778 CGGTTTTCGCCCGGTTTTC 60.371 57.895 0.00 0.00 41.78 2.29
5111 6413 1.370778 GGTTTTCGCCCGGTTTTCG 60.371 57.895 0.00 0.00 38.88 3.46
5112 6414 1.356270 GTTTTCGCCCGGTTTTCGT 59.644 52.632 0.00 0.00 37.11 3.85
5113 6415 0.248580 GTTTTCGCCCGGTTTTCGTT 60.249 50.000 0.00 0.00 37.11 3.85
5114 6416 1.003008 GTTTTCGCCCGGTTTTCGTTA 60.003 47.619 0.00 0.00 37.11 3.18
5115 6417 1.303309 TTTCGCCCGGTTTTCGTTAA 58.697 45.000 0.00 0.00 37.11 2.01
5116 6418 1.521580 TTCGCCCGGTTTTCGTTAAT 58.478 45.000 0.00 0.00 37.11 1.40
5117 6419 1.521580 TCGCCCGGTTTTCGTTAATT 58.478 45.000 0.00 0.00 37.11 1.40
5118 6420 2.693069 TCGCCCGGTTTTCGTTAATTA 58.307 42.857 0.00 0.00 37.11 1.40
5119 6421 3.070018 TCGCCCGGTTTTCGTTAATTAA 58.930 40.909 0.00 0.00 37.11 1.40
5120 6422 3.120373 TCGCCCGGTTTTCGTTAATTAAC 60.120 43.478 16.87 16.87 37.11 2.01
5121 6423 3.120234 CGCCCGGTTTTCGTTAATTAACT 60.120 43.478 22.57 0.00 37.11 2.24
5122 6424 4.160594 GCCCGGTTTTCGTTAATTAACTG 58.839 43.478 22.57 16.63 37.11 3.16
5123 6425 4.725359 CCCGGTTTTCGTTAATTAACTGG 58.275 43.478 22.57 14.83 43.51 4.00
5124 6426 4.216042 CCCGGTTTTCGTTAATTAACTGGT 59.784 41.667 22.57 0.00 42.75 4.00
5125 6427 5.384787 CCGGTTTTCGTTAATTAACTGGTC 58.615 41.667 22.57 11.03 40.53 4.02
5126 6428 5.049543 CCGGTTTTCGTTAATTAACTGGTCA 60.050 40.000 22.57 4.03 40.53 4.02
5127 6429 6.428799 CGGTTTTCGTTAATTAACTGGTCAA 58.571 36.000 22.57 8.39 34.12 3.18
5128 6430 7.079475 CGGTTTTCGTTAATTAACTGGTCAAT 58.921 34.615 22.57 0.00 34.12 2.57
5129 6431 7.592164 CGGTTTTCGTTAATTAACTGGTCAATT 59.408 33.333 22.57 0.00 34.12 2.32
5130 6432 8.908678 GGTTTTCGTTAATTAACTGGTCAATTC 58.091 33.333 22.57 7.21 34.12 2.17
5131 6433 9.673454 GTTTTCGTTAATTAACTGGTCAATTCT 57.327 29.630 22.57 0.00 34.12 2.40
5132 6434 9.887406 TTTTCGTTAATTAACTGGTCAATTCTC 57.113 29.630 22.57 0.00 34.12 2.87
5133 6435 8.610248 TTCGTTAATTAACTGGTCAATTCTCA 57.390 30.769 22.57 0.00 34.12 3.27
5134 6436 8.786826 TCGTTAATTAACTGGTCAATTCTCAT 57.213 30.769 22.57 0.00 34.12 2.90
5135 6437 8.879759 TCGTTAATTAACTGGTCAATTCTCATC 58.120 33.333 22.57 0.00 34.12 2.92
5136 6438 8.883731 CGTTAATTAACTGGTCAATTCTCATCT 58.116 33.333 22.57 0.00 34.12 2.90
5137 6439 9.994432 GTTAATTAACTGGTCAATTCTCATCTG 57.006 33.333 19.07 0.00 33.52 2.90
5138 6440 6.690194 ATTAACTGGTCAATTCTCATCTGC 57.310 37.500 0.00 0.00 0.00 4.26
5139 6441 3.996921 ACTGGTCAATTCTCATCTGCT 57.003 42.857 0.00 0.00 0.00 4.24
5140 6442 4.298103 ACTGGTCAATTCTCATCTGCTT 57.702 40.909 0.00 0.00 0.00 3.91
5141 6443 5.426689 ACTGGTCAATTCTCATCTGCTTA 57.573 39.130 0.00 0.00 0.00 3.09
5142 6444 5.809001 ACTGGTCAATTCTCATCTGCTTAA 58.191 37.500 0.00 0.00 0.00 1.85
5143 6445 6.421485 ACTGGTCAATTCTCATCTGCTTAAT 58.579 36.000 0.00 0.00 0.00 1.40
5144 6446 6.888632 ACTGGTCAATTCTCATCTGCTTAATT 59.111 34.615 0.00 0.00 0.00 1.40
5145 6447 8.049117 ACTGGTCAATTCTCATCTGCTTAATTA 58.951 33.333 0.00 0.00 0.00 1.40
5146 6448 8.806429 TGGTCAATTCTCATCTGCTTAATTAA 57.194 30.769 0.00 0.00 0.00 1.40
5147 6449 9.412460 TGGTCAATTCTCATCTGCTTAATTAAT 57.588 29.630 0.00 0.00 0.00 1.40
5148 6450 9.890352 GGTCAATTCTCATCTGCTTAATTAATC 57.110 33.333 0.00 0.00 0.00 1.75
5155 6457 9.281371 TCTCATCTGCTTAATTAATCAATGAGG 57.719 33.333 27.43 16.81 38.59 3.86
5156 6458 7.879070 TCATCTGCTTAATTAATCAATGAGGC 58.121 34.615 15.30 8.05 0.00 4.70
5157 6459 7.503230 TCATCTGCTTAATTAATCAATGAGGCA 59.497 33.333 15.30 10.93 0.00 4.75
5158 6460 7.643569 TCTGCTTAATTAATCAATGAGGCAA 57.356 32.000 0.00 0.00 0.00 4.52
5159 6461 8.065473 TCTGCTTAATTAATCAATGAGGCAAA 57.935 30.769 0.00 0.00 0.00 3.68
5160 6462 8.698210 TCTGCTTAATTAATCAATGAGGCAAAT 58.302 29.630 0.00 0.00 0.00 2.32
5161 6463 8.876275 TGCTTAATTAATCAATGAGGCAAATC 57.124 30.769 0.00 0.00 0.00 2.17
5162 6464 8.698210 TGCTTAATTAATCAATGAGGCAAATCT 58.302 29.630 0.00 0.00 0.00 2.40
5163 6465 9.538508 GCTTAATTAATCAATGAGGCAAATCTT 57.461 29.630 0.00 0.00 0.00 2.40
5168 6470 9.822185 ATTAATCAATGAGGCAAATCTTTTACC 57.178 29.630 0.00 0.00 0.00 2.85
5169 6471 6.855763 ATCAATGAGGCAAATCTTTTACCA 57.144 33.333 0.00 0.00 0.00 3.25
5170 6472 6.662865 TCAATGAGGCAAATCTTTTACCAA 57.337 33.333 0.00 0.00 0.00 3.67
5171 6473 6.690530 TCAATGAGGCAAATCTTTTACCAAG 58.309 36.000 0.00 0.00 0.00 3.61
5172 6474 5.665916 ATGAGGCAAATCTTTTACCAAGG 57.334 39.130 0.00 0.00 0.00 3.61
5173 6475 3.258123 TGAGGCAAATCTTTTACCAAGGC 59.742 43.478 0.00 0.00 0.00 4.35
5174 6476 3.510459 AGGCAAATCTTTTACCAAGGCT 58.490 40.909 0.00 0.00 0.00 4.58
5175 6477 3.511540 AGGCAAATCTTTTACCAAGGCTC 59.488 43.478 0.00 0.00 0.00 4.70
5176 6478 3.368427 GGCAAATCTTTTACCAAGGCTCC 60.368 47.826 0.00 0.00 0.00 4.70
5177 6479 3.511540 GCAAATCTTTTACCAAGGCTCCT 59.488 43.478 0.00 0.00 0.00 3.69
5178 6480 4.380973 GCAAATCTTTTACCAAGGCTCCTC 60.381 45.833 0.00 0.00 0.00 3.71
5179 6481 3.653835 ATCTTTTACCAAGGCTCCTCC 57.346 47.619 0.00 0.00 0.00 4.30
5180 6482 2.344592 TCTTTTACCAAGGCTCCTCCA 58.655 47.619 0.00 0.00 37.29 3.86
5181 6483 2.305927 TCTTTTACCAAGGCTCCTCCAG 59.694 50.000 0.00 0.00 37.29 3.86
5210 6512 2.009774 CATCACCACCGAACTGAATCC 58.990 52.381 0.00 0.00 0.00 3.01
5211 6513 0.323629 TCACCACCGAACTGAATCCC 59.676 55.000 0.00 0.00 0.00 3.85
5216 6518 1.003118 CACCGAACTGAATCCCTTCCA 59.997 52.381 0.00 0.00 0.00 3.53
5249 6551 2.188469 GCCGAAATCTGGGCGGTA 59.812 61.111 0.00 0.00 46.38 4.02
5250 6552 1.887707 GCCGAAATCTGGGCGGTAG 60.888 63.158 0.00 0.00 46.38 3.18
5251 6553 1.887707 CCGAAATCTGGGCGGTAGC 60.888 63.158 0.00 0.00 40.17 3.58
5277 6579 2.370445 CCTCGTGGAGGGAAGCCAT 61.370 63.158 3.68 0.00 45.43 4.40
5278 6580 1.144936 CTCGTGGAGGGAAGCCATC 59.855 63.158 0.00 0.00 37.81 3.51
5279 6581 1.612146 TCGTGGAGGGAAGCCATCA 60.612 57.895 0.32 0.00 35.86 3.07
5280 6582 1.153289 CGTGGAGGGAAGCCATCAG 60.153 63.158 0.32 0.00 35.86 2.90
5318 6645 0.610687 GAGGTTCAGTCAGTCAGGGG 59.389 60.000 0.00 0.00 0.00 4.79
5370 6703 2.032071 AAGGCCCGTCGTTTCTGG 59.968 61.111 0.00 0.00 0.00 3.86
5380 6715 1.599797 CGTTTCTGGCGGGGTTTCT 60.600 57.895 0.00 0.00 0.00 2.52
5382 6717 1.228429 TTTCTGGCGGGGTTTCTGG 60.228 57.895 0.00 0.00 0.00 3.86
5391 6726 0.251787 GGGGTTTCTGGTGGAATGCT 60.252 55.000 0.00 0.00 33.53 3.79
5392 6727 0.890683 GGGTTTCTGGTGGAATGCTG 59.109 55.000 0.00 0.00 33.53 4.41
5396 6731 2.189594 TTCTGGTGGAATGCTGAGTG 57.810 50.000 0.00 0.00 0.00 3.51
5401 6736 3.030291 TGGTGGAATGCTGAGTGTTTTT 58.970 40.909 0.00 0.00 0.00 1.94
5425 6760 8.856490 TTTTTCTTCTTCTTCTTTTTCGATGG 57.144 30.769 0.00 0.00 0.00 3.51
5427 6762 7.801716 TTCTTCTTCTTCTTTTTCGATGGAA 57.198 32.000 0.00 0.00 0.00 3.53
5451 6786 1.091771 CCATTCCAGGCGCTGTACTG 61.092 60.000 7.64 5.81 34.54 2.74
5452 6787 0.391661 CATTCCAGGCGCTGTACTGT 60.392 55.000 7.64 0.00 32.90 3.55
5453 6788 0.108138 ATTCCAGGCGCTGTACTGTC 60.108 55.000 7.64 0.00 32.90 3.51
5454 6789 2.486636 TTCCAGGCGCTGTACTGTCG 62.487 60.000 7.64 10.57 32.90 4.35
5455 6790 2.566529 CAGGCGCTGTACTGTCGA 59.433 61.111 7.64 0.00 0.00 4.20
5456 6791 1.515088 CAGGCGCTGTACTGTCGAG 60.515 63.158 7.64 0.00 0.00 4.04
5457 6792 1.972223 AGGCGCTGTACTGTCGAGT 60.972 57.895 7.64 0.00 36.07 4.18
5458 6793 1.514443 GGCGCTGTACTGTCGAGTC 60.514 63.158 7.64 5.58 33.21 3.36
5459 6794 1.863880 GCGCTGTACTGTCGAGTCG 60.864 63.158 6.09 6.09 33.21 4.18
5460 6795 1.785951 CGCTGTACTGTCGAGTCGA 59.214 57.895 12.09 12.09 33.21 4.20
5469 6804 3.744719 TCGAGTCGACTTGGCCGG 61.745 66.667 28.48 11.05 0.00 6.13
5470 6805 3.744719 CGAGTCGACTTGGCCGGA 61.745 66.667 23.06 0.00 0.00 5.14
5471 6806 2.182030 GAGTCGACTTGGCCGGAG 59.818 66.667 21.08 0.43 0.00 4.63
5472 6807 2.282958 AGTCGACTTGGCCGGAGA 60.283 61.111 13.58 4.18 0.00 3.71
5473 6808 1.874345 GAGTCGACTTGGCCGGAGAA 61.874 60.000 21.08 0.00 0.00 2.87
5474 6809 1.446272 GTCGACTTGGCCGGAGAAG 60.446 63.158 5.05 8.66 0.00 2.85
5475 6810 1.605451 TCGACTTGGCCGGAGAAGA 60.605 57.895 17.27 8.08 0.00 2.87
5476 6811 0.970937 TCGACTTGGCCGGAGAAGAT 60.971 55.000 17.27 4.42 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.499918 AGAATCTTGGAAGAACAACAGCG 59.500 43.478 0.00 0.00 38.77 5.18
19 20 4.819088 GGCCATCTAGAATCTTGGAAGAAC 59.181 45.833 13.30 0.00 38.77 3.01
111 113 6.809196 AGACATCGCTGAACTTAACTTCTTAG 59.191 38.462 0.00 0.00 0.00 2.18
129 131 2.414481 CAGAAGTGCCTGAAAGACATCG 59.586 50.000 0.00 0.00 36.29 3.84
150 447 2.832201 GAAGCAGCAGCATCCCCC 60.832 66.667 3.17 0.00 45.49 5.40
160 457 1.445582 GCATGCAACAGGAAGCAGC 60.446 57.895 14.21 0.00 44.94 5.25
173 470 7.661040 AGGTTTGATATTACTTAATGGCATGC 58.339 34.615 9.90 9.90 0.00 4.06
254 551 1.602323 CAACTTTACCGCTGCCCCA 60.602 57.895 0.00 0.00 0.00 4.96
257 554 0.663269 GCAACAACTTTACCGCTGCC 60.663 55.000 0.00 0.00 0.00 4.85
270 567 1.955778 CTCATGGTCACAAGGCAACAA 59.044 47.619 0.00 0.00 41.41 2.83
301 598 2.599677 AGAGGTTGTTTCTCGGACTCT 58.400 47.619 0.00 0.00 36.45 3.24
334 631 6.101150 TGGGTCTATTGTACATAGCATTTCCT 59.899 38.462 0.00 0.00 0.00 3.36
340 637 6.112734 CACTTTGGGTCTATTGTACATAGCA 58.887 40.000 0.00 0.00 0.00 3.49
345 642 4.986054 ACCACTTTGGGTCTATTGTACA 57.014 40.909 0.00 0.00 43.37 2.90
394 707 2.048023 CCGGTGTACGTAGCTCCCA 61.048 63.158 0.00 0.00 42.24 4.37
474 788 6.086222 GCATAAGCATGTACCGAAATATTGG 58.914 40.000 0.00 0.00 41.58 3.16
524 848 4.568152 TGGTGCTTAAAGAAGAACTTGC 57.432 40.909 0.00 0.00 40.70 4.01
534 858 7.331791 AGGTAGAAACTAGATGGTGCTTAAAG 58.668 38.462 0.00 0.00 0.00 1.85
590 914 2.790433 TGAAACCATACTGGCACTTCC 58.210 47.619 0.00 0.00 42.67 3.46
689 1016 7.337184 AGTGACATGATAGAGAGAACGAAGTAA 59.663 37.037 0.00 0.00 45.00 2.24
888 1216 4.678509 ATACATTGCGAAACGTTGTCAT 57.321 36.364 0.00 0.00 0.00 3.06
987 1317 6.835174 AGAATCCTTCATTGCAGCTTATCTA 58.165 36.000 0.00 0.00 0.00 1.98
1126 1474 9.442047 ACTCTCTAGTCTGGTGAATAAAAATTG 57.558 33.333 0.00 0.00 0.00 2.32
1191 1542 4.574599 ACCAAGAAAAGCTGTAGCAAAG 57.425 40.909 6.65 0.00 45.16 2.77
1600 2100 6.467677 AGAAGCTAAAGAATACAGAACAGCA 58.532 36.000 0.00 0.00 0.00 4.41
1674 2181 8.912988 TGTCAAGTTTCATTAATTGGAAGAGTT 58.087 29.630 0.00 0.00 0.00 3.01
1875 2391 9.756461 GAAGCTAGCAAACAAATAAACTAGTAC 57.244 33.333 18.83 0.00 31.77 2.73
1891 2407 6.128282 CCGAATTACAAGAAAGAAGCTAGCAA 60.128 38.462 18.83 0.00 0.00 3.91
1894 2410 5.220681 GCCCGAATTACAAGAAAGAAGCTAG 60.221 44.000 0.00 0.00 0.00 3.42
1963 2479 2.640184 CATGCCTCTTGAGCAAGATGA 58.360 47.619 16.37 4.68 45.40 2.92
2008 2524 9.519905 CTTCATTTTATTGAGCAAATTTGTTCG 57.480 29.630 24.30 11.52 40.72 3.95
2071 2589 7.998383 TGAGCAATTACCATCCATGTAAGTATT 59.002 33.333 0.00 0.00 0.00 1.89
2157 2717 9.573133 AAATATAAACGAAAATGAGCAGAAAGG 57.427 29.630 0.00 0.00 0.00 3.11
2388 2949 9.604626 CTCTTTTGAAGCTAGATGTGTAAAAAG 57.395 33.333 0.00 1.27 0.00 2.27
2425 2988 5.009010 GCATACTGGAAATCCCACTACAATG 59.991 44.000 0.00 0.00 40.82 2.82
2427 2990 4.227300 AGCATACTGGAAATCCCACTACAA 59.773 41.667 0.00 0.00 40.82 2.41
2428 2991 3.780294 AGCATACTGGAAATCCCACTACA 59.220 43.478 0.00 0.00 40.82 2.74
2429 2992 4.423625 AGCATACTGGAAATCCCACTAC 57.576 45.455 0.00 0.00 40.82 2.73
2431 2994 4.910304 AGATAGCATACTGGAAATCCCACT 59.090 41.667 0.00 0.00 40.82 4.00
2432 2995 5.234466 AGATAGCATACTGGAAATCCCAC 57.766 43.478 0.00 0.00 40.82 4.61
2519 3089 8.670521 ATTACATGAAAGGGAAGGAAATTTCT 57.329 30.769 17.42 0.00 33.74 2.52
2645 3218 3.674138 GCCAACACTGATGCAGTAAATGG 60.674 47.826 15.43 15.43 43.43 3.16
2728 3314 5.477984 ACCATGAAACTCGGTACTAGTGTAA 59.522 40.000 5.39 0.00 33.52 2.41
2730 3316 3.830755 ACCATGAAACTCGGTACTAGTGT 59.169 43.478 5.39 0.00 33.52 3.55
2998 3590 3.225104 CATTGGATGATAACCACCTGGG 58.775 50.000 0.00 0.00 44.81 4.45
3207 4108 5.459536 TCCAACTATATAGACAGCAGCAG 57.540 43.478 16.79 0.00 0.00 4.24
3212 4113 7.206687 GGATATGCTCCAACTATATAGACAGC 58.793 42.308 16.79 15.43 44.26 4.40
3406 4338 7.422399 GTGCAAGTACCTTTCATGAAACTTTA 58.578 34.615 16.91 8.16 0.00 1.85
3484 4502 6.091305 ACATGTTGTAGAAACATCAGATGACG 59.909 38.462 17.81 0.00 38.40 4.35
3533 4553 9.869757 ATTTGTATTTTGTAGAAATAACAGCCC 57.130 29.630 0.00 0.00 0.00 5.19
3561 4582 5.175090 GCAACCTGCAATACTAATTCCTC 57.825 43.478 0.00 0.00 44.26 3.71
3654 4702 3.863142 GCTTCAGGCAACATCAGAAAT 57.137 42.857 0.00 0.00 41.35 2.17
3830 4892 3.134081 TGTTCCCTATCTCCGATCCAAAC 59.866 47.826 0.00 0.00 0.00 2.93
3839 4901 1.763545 GGTCCTGTGTTCCCTATCTCC 59.236 57.143 0.00 0.00 0.00 3.71
4008 5070 5.243730 TCCAAAGGCTGGTTATCAAAAGAAG 59.756 40.000 0.00 0.00 46.51 2.85
4026 5088 7.396540 AAGCTATATGTTCACCTTTCCAAAG 57.603 36.000 0.00 0.00 35.79 2.77
4027 5089 7.885922 TGTAAGCTATATGTTCACCTTTCCAAA 59.114 33.333 0.00 0.00 0.00 3.28
4030 5092 8.451908 AATGTAAGCTATATGTTCACCTTTCC 57.548 34.615 0.00 0.00 0.00 3.13
4049 5291 8.671384 ACAACAGAACTAGCTAACAAATGTAA 57.329 30.769 0.00 0.00 0.00 2.41
4072 5314 6.463360 TGTATTACTTGACAGCAATCAGACA 58.537 36.000 0.00 0.00 32.68 3.41
4280 5525 7.436080 GCAAAATTACCTATGTCATCATGGTTG 59.564 37.037 9.44 4.58 37.04 3.77
4324 5571 9.696572 ATGATGATTAATAGGCAATTCATAGCT 57.303 29.630 0.00 0.00 0.00 3.32
4363 5610 6.094603 AGCTGGTCTCAACATAAATCATCAAC 59.905 38.462 0.00 0.00 0.00 3.18
4376 5623 4.757149 ACAAATGAGTAAGCTGGTCTCAAC 59.243 41.667 16.00 0.00 40.73 3.18
4385 5632 6.054860 AGACATACCACAAATGAGTAAGCT 57.945 37.500 0.00 0.00 0.00 3.74
4455 5702 0.173708 ATGGCTTCTCTTCGTCCGAC 59.826 55.000 0.00 0.00 0.00 4.79
4533 5783 2.737359 CGCGGCTCCAAGATTACACTAA 60.737 50.000 0.00 0.00 0.00 2.24
4586 5839 1.806247 CGCAATTACCGCATCTCTGGA 60.806 52.381 0.00 0.00 0.00 3.86
4667 5930 3.340034 TGTAGACAGCAAATTTACCCGG 58.660 45.455 0.00 0.00 0.00 5.73
4668 5931 4.201910 CCATGTAGACAGCAAATTTACCCG 60.202 45.833 0.00 0.00 0.00 5.28
4669 5932 4.440112 GCCATGTAGACAGCAAATTTACCC 60.440 45.833 0.00 0.00 0.00 3.69
4670 5933 4.399303 AGCCATGTAGACAGCAAATTTACC 59.601 41.667 0.00 0.00 0.00 2.85
4671 5934 5.123820 TCAGCCATGTAGACAGCAAATTTAC 59.876 40.000 0.00 0.00 0.00 2.01
4676 5939 2.857186 TCAGCCATGTAGACAGCAAA 57.143 45.000 0.00 0.00 0.00 3.68
4715 5978 2.917933 TGTTCCTGAGGTTTGACACAG 58.082 47.619 0.00 0.00 0.00 3.66
4722 5985 2.136026 AGAGGGTTGTTCCTGAGGTTT 58.864 47.619 0.00 0.00 37.25 3.27
4741 6010 4.275689 TGTCCACTTGTTCAGCAATTACAG 59.724 41.667 0.00 0.00 36.36 2.74
4766 6035 3.214328 GTTCCAACACCAGATGAACTGT 58.786 45.455 0.00 0.00 44.40 3.55
4767 6036 3.213506 TGTTCCAACACCAGATGAACTG 58.786 45.455 0.00 0.00 38.94 3.16
4768 6037 3.576078 TGTTCCAACACCAGATGAACT 57.424 42.857 0.00 0.00 33.17 3.01
4769 6038 4.853924 AATGTTCCAACACCAGATGAAC 57.146 40.909 0.00 0.00 42.51 3.18
4780 6049 5.507985 CCTGGAAGACAAGAAATGTTCCAAC 60.508 44.000 5.28 0.00 44.49 3.77
4784 6053 4.083802 CGACCTGGAAGACAAGAAATGTTC 60.084 45.833 0.00 0.00 44.12 3.18
4793 6062 0.105964 CACCACGACCTGGAAGACAA 59.894 55.000 0.00 0.00 43.95 3.18
4806 6075 0.869068 TAAATTGGACGCACACCACG 59.131 50.000 0.00 0.00 37.13 4.94
4809 6078 1.264826 ACGTTAAATTGGACGCACACC 59.735 47.619 12.23 0.00 42.67 4.16
4810 6079 2.222445 AGACGTTAAATTGGACGCACAC 59.778 45.455 12.23 4.31 42.67 3.82
4816 6085 3.071479 TGCAGGAGACGTTAAATTGGAC 58.929 45.455 0.00 0.00 0.00 4.02
4817 6086 3.071479 GTGCAGGAGACGTTAAATTGGA 58.929 45.455 0.00 0.00 0.00 3.53
4824 6093 2.967397 CCGGTGCAGGAGACGTTA 59.033 61.111 0.00 0.00 0.00 3.18
4836 6105 2.546114 ATAAAGGAACGGGGCCGGTG 62.546 60.000 18.21 2.17 40.58 4.94
4839 6108 2.041251 TAAATAAAGGAACGGGGCCG 57.959 50.000 0.00 0.00 46.03 6.13
4844 6113 8.276252 TGGAGAAGAAATAAATAAAGGAACGG 57.724 34.615 0.00 0.00 0.00 4.44
4845 6114 9.162764 TCTGGAGAAGAAATAAATAAAGGAACG 57.837 33.333 0.00 0.00 29.54 3.95
4854 6123 6.981559 GCGTACTCTCTGGAGAAGAAATAAAT 59.018 38.462 1.86 0.00 41.86 1.40
4858 6127 4.020543 AGCGTACTCTCTGGAGAAGAAAT 58.979 43.478 1.86 0.00 41.86 2.17
4864 6133 2.719531 ATCAGCGTACTCTCTGGAGA 57.280 50.000 0.20 0.20 41.86 3.71
4865 6134 2.225491 GCTATCAGCGTACTCTCTGGAG 59.775 54.545 6.76 0.00 44.62 3.86
4866 6135 2.222886 GCTATCAGCGTACTCTCTGGA 58.777 52.381 6.76 0.00 0.00 3.86
4867 6136 2.697431 GCTATCAGCGTACTCTCTGG 57.303 55.000 6.76 0.00 0.00 3.86
4890 6159 7.943079 TTCTGCCATTCTCTCAAAAATATGA 57.057 32.000 0.00 0.00 0.00 2.15
4896 6169 3.827876 TGCATTCTGCCATTCTCTCAAAA 59.172 39.130 0.00 0.00 44.23 2.44
4899 6172 2.793288 TGCATTCTGCCATTCTCTCA 57.207 45.000 0.00 0.00 44.23 3.27
4904 6177 4.340381 ACTTCCTTATGCATTCTGCCATTC 59.660 41.667 3.54 0.00 44.23 2.67
4905 6178 4.098960 CACTTCCTTATGCATTCTGCCATT 59.901 41.667 3.54 0.00 44.23 3.16
4906 6179 3.635373 CACTTCCTTATGCATTCTGCCAT 59.365 43.478 3.54 0.00 44.23 4.40
4907 6180 3.018856 CACTTCCTTATGCATTCTGCCA 58.981 45.455 3.54 0.00 44.23 4.92
4908 6181 3.282021 TCACTTCCTTATGCATTCTGCC 58.718 45.455 3.54 0.00 44.23 4.85
4909 6182 3.944015 ACTCACTTCCTTATGCATTCTGC 59.056 43.478 3.54 0.00 45.29 4.26
4912 6185 5.448360 GCTCAACTCACTTCCTTATGCATTC 60.448 44.000 3.54 0.00 0.00 2.67
4914 6187 3.944015 GCTCAACTCACTTCCTTATGCAT 59.056 43.478 3.79 3.79 0.00 3.96
4916 6189 3.338249 TGCTCAACTCACTTCCTTATGC 58.662 45.455 0.00 0.00 0.00 3.14
4917 6190 5.947228 TTTGCTCAACTCACTTCCTTATG 57.053 39.130 0.00 0.00 0.00 1.90
4919 6192 4.821805 CCTTTTGCTCAACTCACTTCCTTA 59.178 41.667 0.00 0.00 0.00 2.69
4921 6194 3.217626 CCTTTTGCTCAACTCACTTCCT 58.782 45.455 0.00 0.00 0.00 3.36
4922 6195 2.952310 ACCTTTTGCTCAACTCACTTCC 59.048 45.455 0.00 0.00 0.00 3.46
4940 6242 2.026822 CAGCCTGTGTTATCTGGAACCT 60.027 50.000 0.00 0.00 0.00 3.50
4958 6260 1.266718 TGTTCTGCAAATCGTTCCAGC 59.733 47.619 0.00 0.00 0.00 4.85
4967 6269 3.627577 AGACTCGTTTGTGTTCTGCAAAT 59.372 39.130 0.00 0.00 38.00 2.32
4968 6270 3.006940 AGACTCGTTTGTGTTCTGCAAA 58.993 40.909 0.00 0.00 33.96 3.68
4969 6271 2.607635 GAGACTCGTTTGTGTTCTGCAA 59.392 45.455 0.00 0.00 0.00 4.08
4970 6272 2.201732 GAGACTCGTTTGTGTTCTGCA 58.798 47.619 0.00 0.00 0.00 4.41
5002 6304 1.336440 CTAGGCTGATCACTGTCTCCG 59.664 57.143 0.00 0.00 32.53 4.63
5003 6305 1.068434 GCTAGGCTGATCACTGTCTCC 59.932 57.143 0.00 0.00 32.53 3.71
5005 6307 2.157640 AGCTAGGCTGATCACTGTCT 57.842 50.000 0.00 0.00 37.57 3.41
5008 6310 2.429971 TCTGAAGCTAGGCTGATCACTG 59.570 50.000 0.00 0.00 39.62 3.66
5009 6311 2.694628 CTCTGAAGCTAGGCTGATCACT 59.305 50.000 0.00 0.00 39.62 3.41
5011 6313 3.023939 TCTCTGAAGCTAGGCTGATCA 57.976 47.619 0.00 0.00 39.62 2.92
5012 6314 3.384467 ACTTCTCTGAAGCTAGGCTGATC 59.616 47.826 0.00 0.00 39.62 2.92
5013 6315 3.132646 CACTTCTCTGAAGCTAGGCTGAT 59.867 47.826 0.00 0.00 39.62 2.90
5015 6317 2.891112 CACTTCTCTGAAGCTAGGCTG 58.109 52.381 0.00 0.00 39.62 4.85
5018 6320 2.418471 CCAGCACTTCTCTGAAGCTAGG 60.418 54.545 7.17 1.96 33.59 3.02
5019 6321 2.233431 ACCAGCACTTCTCTGAAGCTAG 59.767 50.000 7.17 0.00 33.59 3.42
5020 6322 2.028658 CACCAGCACTTCTCTGAAGCTA 60.029 50.000 7.17 0.00 33.59 3.32
5056 6358 1.336240 GGAAGCAAAGCAACGCTCAAT 60.336 47.619 0.00 0.00 38.25 2.57
5057 6359 0.030638 GGAAGCAAAGCAACGCTCAA 59.969 50.000 0.00 0.00 38.25 3.02
5058 6360 1.100463 TGGAAGCAAAGCAACGCTCA 61.100 50.000 0.00 0.00 38.25 4.26
5066 6368 1.004560 GGGCCTTTGGAAGCAAAGC 60.005 57.895 0.84 0.00 39.97 3.51
5072 6374 0.113190 ACTGGAAGGGCCTTTGGAAG 59.887 55.000 21.92 16.75 39.30 3.46
5083 6385 1.574702 GGCGAAAACCGACTGGAAGG 61.575 60.000 0.00 0.00 44.62 3.46
5085 6387 4.052519 GGCGAAAACCGACTGGAA 57.947 55.556 0.00 0.00 44.62 3.53
5093 6395 1.370778 CGAAAACCGGGCGAAAACC 60.371 57.895 6.32 0.00 33.91 3.27
5094 6396 0.248580 AACGAAAACCGGGCGAAAAC 60.249 50.000 6.32 0.00 43.93 2.43
5095 6397 1.303309 TAACGAAAACCGGGCGAAAA 58.697 45.000 6.32 0.00 43.93 2.29
5096 6398 1.303309 TTAACGAAAACCGGGCGAAA 58.697 45.000 6.32 2.08 43.93 3.46
5097 6399 1.521580 ATTAACGAAAACCGGGCGAA 58.478 45.000 6.32 0.00 43.93 4.70
5098 6400 1.521580 AATTAACGAAAACCGGGCGA 58.478 45.000 6.32 0.00 43.93 5.54
5099 6401 3.120234 AGTTAATTAACGAAAACCGGGCG 60.120 43.478 19.92 6.57 43.93 6.13
5100 6402 4.160594 CAGTTAATTAACGAAAACCGGGC 58.839 43.478 19.92 0.00 43.93 6.13
5101 6403 4.216042 ACCAGTTAATTAACGAAAACCGGG 59.784 41.667 19.92 14.44 43.93 5.73
5102 6404 5.049543 TGACCAGTTAATTAACGAAAACCGG 60.050 40.000 19.92 0.00 43.93 5.28
5103 6405 5.988092 TGACCAGTTAATTAACGAAAACCG 58.012 37.500 19.92 8.16 40.96 4.44
5104 6406 8.806177 AATTGACCAGTTAATTAACGAAAACC 57.194 30.769 19.92 10.60 40.96 3.27
5105 6407 9.673454 AGAATTGACCAGTTAATTAACGAAAAC 57.327 29.630 19.92 13.01 40.96 2.43
5106 6408 9.887406 GAGAATTGACCAGTTAATTAACGAAAA 57.113 29.630 19.92 12.70 40.96 2.29
5107 6409 9.058174 TGAGAATTGACCAGTTAATTAACGAAA 57.942 29.630 19.92 12.42 40.96 3.46
5108 6410 8.610248 TGAGAATTGACCAGTTAATTAACGAA 57.390 30.769 19.92 10.87 40.96 3.85
5109 6411 8.786826 ATGAGAATTGACCAGTTAATTAACGA 57.213 30.769 19.92 6.43 40.96 3.85
5110 6412 8.883731 AGATGAGAATTGACCAGTTAATTAACG 58.116 33.333 19.92 15.03 40.96 3.18
5111 6413 9.994432 CAGATGAGAATTGACCAGTTAATTAAC 57.006 33.333 18.77 18.77 36.46 2.01
5112 6414 8.677300 GCAGATGAGAATTGACCAGTTAATTAA 58.323 33.333 1.01 0.00 30.34 1.40
5113 6415 8.049117 AGCAGATGAGAATTGACCAGTTAATTA 58.951 33.333 1.01 0.00 30.34 1.40
5114 6416 6.888632 AGCAGATGAGAATTGACCAGTTAATT 59.111 34.615 0.61 0.61 32.45 1.40
5115 6417 6.421485 AGCAGATGAGAATTGACCAGTTAAT 58.579 36.000 0.00 0.00 0.00 1.40
5116 6418 5.809001 AGCAGATGAGAATTGACCAGTTAA 58.191 37.500 0.00 0.00 0.00 2.01
5117 6419 5.426689 AGCAGATGAGAATTGACCAGTTA 57.573 39.130 0.00 0.00 0.00 2.24
5118 6420 4.298103 AGCAGATGAGAATTGACCAGTT 57.702 40.909 0.00 0.00 0.00 3.16
5119 6421 3.996921 AGCAGATGAGAATTGACCAGT 57.003 42.857 0.00 0.00 0.00 4.00
5120 6422 6.939132 ATTAAGCAGATGAGAATTGACCAG 57.061 37.500 0.00 0.00 0.00 4.00
5121 6423 8.806429 TTAATTAAGCAGATGAGAATTGACCA 57.194 30.769 0.00 0.00 0.00 4.02
5122 6424 9.890352 GATTAATTAAGCAGATGAGAATTGACC 57.110 33.333 8.56 0.00 0.00 4.02
5129 6431 9.281371 CCTCATTGATTAATTAAGCAGATGAGA 57.719 33.333 34.65 22.53 42.08 3.27
5130 6432 8.021973 GCCTCATTGATTAATTAAGCAGATGAG 58.978 37.037 31.24 31.24 40.98 2.90
5131 6433 7.503230 TGCCTCATTGATTAATTAAGCAGATGA 59.497 33.333 23.91 23.91 32.75 2.92
5132 6434 7.654568 TGCCTCATTGATTAATTAAGCAGATG 58.345 34.615 15.16 18.49 32.75 2.90
5133 6435 7.828508 TGCCTCATTGATTAATTAAGCAGAT 57.171 32.000 15.16 9.79 32.75 2.90
5134 6436 7.643569 TTGCCTCATTGATTAATTAAGCAGA 57.356 32.000 15.16 9.95 32.75 4.26
5135 6437 8.882415 ATTTGCCTCATTGATTAATTAAGCAG 57.118 30.769 15.16 6.35 32.75 4.24
5136 6438 8.698210 AGATTTGCCTCATTGATTAATTAAGCA 58.302 29.630 11.99 11.99 0.00 3.91
5137 6439 9.538508 AAGATTTGCCTCATTGATTAATTAAGC 57.461 29.630 6.51 6.51 0.00 3.09
5142 6444 9.822185 GGTAAAAGATTTGCCTCATTGATTAAT 57.178 29.630 3.12 0.00 0.00 1.40
5143 6445 8.811017 TGGTAAAAGATTTGCCTCATTGATTAA 58.189 29.630 10.57 0.00 0.00 1.40
5144 6446 8.359875 TGGTAAAAGATTTGCCTCATTGATTA 57.640 30.769 10.57 0.00 0.00 1.75
5145 6447 7.243604 TGGTAAAAGATTTGCCTCATTGATT 57.756 32.000 10.57 0.00 0.00 2.57
5146 6448 6.855763 TGGTAAAAGATTTGCCTCATTGAT 57.144 33.333 10.57 0.00 0.00 2.57
5147 6449 6.295236 CCTTGGTAAAAGATTTGCCTCATTGA 60.295 38.462 10.57 0.00 0.00 2.57
5148 6450 5.870978 CCTTGGTAAAAGATTTGCCTCATTG 59.129 40.000 10.57 0.00 0.00 2.82
5149 6451 5.569428 GCCTTGGTAAAAGATTTGCCTCATT 60.569 40.000 10.57 0.00 0.00 2.57
5150 6452 4.081476 GCCTTGGTAAAAGATTTGCCTCAT 60.081 41.667 10.57 0.00 0.00 2.90
5151 6453 3.258123 GCCTTGGTAAAAGATTTGCCTCA 59.742 43.478 10.57 0.00 0.00 3.86
5152 6454 3.511540 AGCCTTGGTAAAAGATTTGCCTC 59.488 43.478 10.57 0.07 0.00 4.70
5153 6455 3.510459 AGCCTTGGTAAAAGATTTGCCT 58.490 40.909 10.57 0.00 0.00 4.75
5154 6456 3.368427 GGAGCCTTGGTAAAAGATTTGCC 60.368 47.826 3.36 3.36 0.00 4.52
5155 6457 3.511540 AGGAGCCTTGGTAAAAGATTTGC 59.488 43.478 0.00 0.00 0.00 3.68
5156 6458 4.158579 GGAGGAGCCTTGGTAAAAGATTTG 59.841 45.833 0.00 0.00 0.00 2.32
5157 6459 4.202673 TGGAGGAGCCTTGGTAAAAGATTT 60.203 41.667 0.00 0.00 37.63 2.17
5158 6460 3.333680 TGGAGGAGCCTTGGTAAAAGATT 59.666 43.478 0.00 0.00 37.63 2.40
5159 6461 2.919602 TGGAGGAGCCTTGGTAAAAGAT 59.080 45.455 0.00 0.00 37.63 2.40
5160 6462 2.305927 CTGGAGGAGCCTTGGTAAAAGA 59.694 50.000 0.00 0.00 37.63 2.52
5161 6463 2.716217 CTGGAGGAGCCTTGGTAAAAG 58.284 52.381 0.00 0.00 37.63 2.27
5162 6464 1.271926 GCTGGAGGAGCCTTGGTAAAA 60.272 52.381 0.00 0.00 42.54 1.52
5163 6465 0.328258 GCTGGAGGAGCCTTGGTAAA 59.672 55.000 0.00 0.00 42.54 2.01
5164 6466 1.991230 GCTGGAGGAGCCTTGGTAA 59.009 57.895 0.00 0.00 42.54 2.85
5165 6467 3.727387 GCTGGAGGAGCCTTGGTA 58.273 61.111 0.00 0.00 42.54 3.25
5173 6475 2.158856 TGATGCTAACATGCTGGAGGAG 60.159 50.000 0.00 0.00 36.35 3.69
5174 6476 1.839354 TGATGCTAACATGCTGGAGGA 59.161 47.619 0.00 0.00 36.35 3.71
5175 6477 1.945394 GTGATGCTAACATGCTGGAGG 59.055 52.381 0.00 0.00 36.35 4.30
5176 6478 1.945394 GGTGATGCTAACATGCTGGAG 59.055 52.381 0.00 0.00 36.35 3.86
5177 6479 1.281577 TGGTGATGCTAACATGCTGGA 59.718 47.619 0.00 0.00 36.35 3.86
5178 6480 1.402968 GTGGTGATGCTAACATGCTGG 59.597 52.381 0.00 0.00 36.35 4.85
5179 6481 1.402968 GGTGGTGATGCTAACATGCTG 59.597 52.381 0.00 0.00 36.35 4.41
5180 6482 1.755179 GGTGGTGATGCTAACATGCT 58.245 50.000 0.00 0.00 36.35 3.79
5181 6483 0.378257 CGGTGGTGATGCTAACATGC 59.622 55.000 0.00 0.00 36.35 4.06
5186 6488 1.621317 TCAGTTCGGTGGTGATGCTAA 59.379 47.619 0.00 0.00 0.00 3.09
5210 6512 1.181098 CCCAAGCCAACACTGGAAGG 61.181 60.000 0.00 0.00 46.92 3.46
5211 6513 0.178992 TCCCAAGCCAACACTGGAAG 60.179 55.000 0.00 0.00 46.92 3.46
5234 6536 3.719214 GCTACCGCCCAGATTTCG 58.281 61.111 0.00 0.00 0.00 3.46
5260 6562 1.144936 GATGGCTTCCCTCCACGAG 59.855 63.158 0.00 0.00 36.26 4.18
5261 6563 1.612146 TGATGGCTTCCCTCCACGA 60.612 57.895 0.00 0.00 36.26 4.35
5262 6564 1.153289 CTGATGGCTTCCCTCCACG 60.153 63.158 0.00 0.00 36.26 4.94
5263 6565 1.225704 CCTGATGGCTTCCCTCCAC 59.774 63.158 0.00 0.00 36.26 4.02
5264 6566 0.846427 AACCTGATGGCTTCCCTCCA 60.846 55.000 0.00 0.00 38.09 3.86
5265 6567 0.332972 AAACCTGATGGCTTCCCTCC 59.667 55.000 0.00 0.00 36.63 4.30
5266 6568 1.467920 CAAACCTGATGGCTTCCCTC 58.532 55.000 0.00 0.00 36.63 4.30
5267 6569 0.040204 CCAAACCTGATGGCTTCCCT 59.960 55.000 0.00 0.00 36.63 4.20
5274 6576 2.361610 AGGCGCCAAACCTGATGG 60.362 61.111 31.54 0.00 41.08 3.51
5275 6577 2.753966 CGAGGCGCCAAACCTGATG 61.754 63.158 31.54 2.74 37.77 3.07
5277 6579 3.621805 TCGAGGCGCCAAACCTGA 61.622 61.111 31.54 13.49 37.77 3.86
5278 6580 3.423154 GTCGAGGCGCCAAACCTG 61.423 66.667 31.54 11.19 37.77 4.00
5296 6623 0.389166 CTGACTGACTGAACCTCGCC 60.389 60.000 0.00 0.00 0.00 5.54
5318 6645 2.119655 CATGCTTGCCTCCTCAGCC 61.120 63.158 0.00 0.00 0.00 4.85
5370 6703 1.304134 ATTCCACCAGAAACCCCGC 60.304 57.895 0.00 0.00 38.21 6.13
5375 6708 2.227388 CACTCAGCATTCCACCAGAAAC 59.773 50.000 0.00 0.00 38.21 2.78
5380 6715 2.363306 AAACACTCAGCATTCCACCA 57.637 45.000 0.00 0.00 0.00 4.17
5401 6736 8.220755 TCCATCGAAAAAGAAGAAGAAGAAAA 57.779 30.769 0.00 0.00 0.00 2.29
5402 6737 7.801716 TCCATCGAAAAAGAAGAAGAAGAAA 57.198 32.000 0.00 0.00 0.00 2.52
5403 6738 7.520614 GCTTCCATCGAAAAAGAAGAAGAAGAA 60.521 37.037 16.59 0.00 38.38 2.52
5405 6740 6.082984 GCTTCCATCGAAAAAGAAGAAGAAG 58.917 40.000 16.59 0.00 38.38 2.85
5406 6741 5.530915 TGCTTCCATCGAAAAAGAAGAAGAA 59.469 36.000 16.59 3.32 38.38 2.52
5408 6743 5.362556 TGCTTCCATCGAAAAAGAAGAAG 57.637 39.130 16.59 10.04 38.38 2.85
5409 6744 5.942872 GATGCTTCCATCGAAAAAGAAGAA 58.057 37.500 16.59 9.63 38.59 2.52
5425 6760 2.028130 CGCCTGGAATGGATGCTTC 58.972 57.895 0.00 0.00 0.00 3.86
5427 6762 2.517875 GCGCCTGGAATGGATGCT 60.518 61.111 0.00 0.00 0.00 3.79
5452 6787 3.744719 CCGGCCAAGTCGACTCGA 61.745 66.667 20.33 0.00 29.41 4.04
5453 6788 3.685214 CTCCGGCCAAGTCGACTCG 62.685 68.421 20.33 17.36 29.41 4.18
5454 6789 1.874345 TTCTCCGGCCAAGTCGACTC 61.874 60.000 20.33 6.35 29.41 3.36
5455 6790 1.878656 CTTCTCCGGCCAAGTCGACT 61.879 60.000 13.58 13.58 29.41 4.18
5456 6791 1.446272 CTTCTCCGGCCAAGTCGAC 60.446 63.158 7.70 7.70 29.41 4.20
5457 6792 0.970937 ATCTTCTCCGGCCAAGTCGA 60.971 55.000 2.24 1.39 29.41 4.20
5458 6793 1.517832 ATCTTCTCCGGCCAAGTCG 59.482 57.895 2.24 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.