Multiple sequence alignment - TraesCS3A01G144500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G144500 chr3A 100.000 3779 0 0 1 3779 127070707 127074485 0.000000e+00 6979.0
1 TraesCS3A01G144500 chr3A 91.452 2410 189 11 566 2961 127858676 127856270 0.000000e+00 3293.0
2 TraesCS3A01G144500 chr6D 92.716 2526 178 6 560 3083 452127754 452125233 0.000000e+00 3640.0
3 TraesCS3A01G144500 chr6D 89.014 355 20 8 3441 3779 452125088 452124737 4.510000e-114 422.0
4 TraesCS3A01G144500 chr6D 96.190 105 4 0 3311 3415 452125186 452125082 5.020000e-39 172.0
5 TraesCS3A01G144500 chr6D 98.305 59 1 0 3119 3177 452125242 452125184 1.860000e-18 104.0
6 TraesCS3A01G144500 chr6D 92.063 63 5 0 2939 3001 452125295 452125233 5.200000e-14 89.8
7 TraesCS3A01G144500 chr1D 91.660 2446 169 17 560 3003 341029723 341027311 0.000000e+00 3354.0
8 TraesCS3A01G144500 chr1D 91.387 2380 196 7 560 2935 465902891 465900517 0.000000e+00 3251.0
9 TraesCS3A01G144500 chr1D 88.693 1079 90 9 1940 3016 430228212 430229260 0.000000e+00 1288.0
10 TraesCS3A01G144500 chr1D 95.312 64 3 0 3320 3383 430229349 430229412 6.680000e-18 102.0
11 TraesCS3A01G144500 chr3B 93.051 2288 152 5 560 2844 172981581 172979298 0.000000e+00 3338.0
12 TraesCS3A01G144500 chr3B 91.470 2415 181 18 560 2968 146982217 146979822 0.000000e+00 3295.0
13 TraesCS3A01G144500 chr3B 92.560 2285 165 3 559 2842 172170758 172173038 0.000000e+00 3273.0
14 TraesCS3A01G144500 chr3D 92.755 2305 161 4 560 2862 121268572 121266272 0.000000e+00 3326.0
15 TraesCS3A01G144500 chr3D 92.104 2305 176 4 560 2862 121334527 121332227 0.000000e+00 3243.0
16 TraesCS3A01G144500 chr3D 84.672 137 10 7 3320 3446 120134395 120134530 3.960000e-25 126.0
17 TraesCS3A01G144500 chr1B 91.134 2380 202 7 560 2935 642701230 642698856 0.000000e+00 3217.0
18 TraesCS3A01G144500 chr1B 90.119 506 30 5 1 497 216500002 216499508 1.140000e-179 640.0
19 TraesCS3A01G144500 chr1B 92.944 411 20 2 160 561 48793269 48793679 1.170000e-164 590.0
20 TraesCS3A01G144500 chr1B 87.209 344 43 1 1 344 299651388 299651730 1.270000e-104 390.0
21 TraesCS3A01G144500 chr1B 95.620 137 6 0 3176 3312 502235983 502236119 1.770000e-53 220.0
22 TraesCS3A01G144500 chr5A 98.761 565 6 1 1 565 680705478 680706041 0.000000e+00 1003.0
23 TraesCS3A01G144500 chr5A 85.765 562 73 6 1 561 242365558 242366113 4.200000e-164 588.0
24 TraesCS3A01G144500 chr5A 98.990 198 2 0 364 561 680699608 680699805 4.640000e-94 355.0
25 TraesCS3A01G144500 chr6A 98.752 561 7 0 1 561 201082787 201083347 0.000000e+00 998.0
26 TraesCS3A01G144500 chr6A 98.477 197 3 0 365 561 201066821 201067017 7.770000e-92 348.0
27 TraesCS3A01G144500 chr1A 86.667 825 74 14 2181 3003 440712901 440712111 0.000000e+00 881.0
28 TraesCS3A01G144500 chr1A 95.620 137 6 0 3176 3312 416421955 416421819 1.770000e-53 220.0
29 TraesCS3A01G144500 chr5D 93.286 566 25 2 1 565 544395002 544394449 0.000000e+00 822.0
30 TraesCS3A01G144500 chr2D 89.858 562 52 4 1 561 450447284 450446727 0.000000e+00 717.0
31 TraesCS3A01G144500 chr2D 95.620 137 6 0 3176 3312 322919543 322919679 1.770000e-53 220.0
32 TraesCS3A01G144500 chr5B 93.631 471 26 3 3125 3594 507798462 507797995 0.000000e+00 701.0
33 TraesCS3A01G144500 chr5B 95.484 155 7 0 3625 3779 507798003 507797849 8.110000e-62 248.0
34 TraesCS3A01G144500 chr4B 83.281 317 53 0 15 331 602216064 602215748 3.690000e-75 292.0
35 TraesCS3A01G144500 chr4B 95.620 137 6 0 3176 3312 653387829 653387965 1.770000e-53 220.0
36 TraesCS3A01G144500 chr2B 83.125 320 54 0 12 331 744310301 744310620 3.690000e-75 292.0
37 TraesCS3A01G144500 chrUn 95.620 137 6 0 3176 3312 222670427 222670291 1.770000e-53 220.0
38 TraesCS3A01G144500 chrUn 94.366 142 6 2 3176 3317 86464847 86464986 2.290000e-52 217.0
39 TraesCS3A01G144500 chr4D 95.620 137 6 0 3176 3312 123440650 123440786 1.770000e-53 220.0
40 TraesCS3A01G144500 chr6B 94.815 135 7 0 3178 3312 297478019 297477885 1.060000e-50 211.0
41 TraesCS3A01G144500 chr2A 84.615 195 21 5 2776 2969 779947067 779947253 6.450000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G144500 chr3A 127070707 127074485 3778 False 6979.00 6979 100.0000 1 3779 1 chr3A.!!$F1 3778
1 TraesCS3A01G144500 chr3A 127856270 127858676 2406 True 3293.00 3293 91.4520 566 2961 1 chr3A.!!$R1 2395
2 TraesCS3A01G144500 chr6D 452124737 452127754 3017 True 885.56 3640 93.6576 560 3779 5 chr6D.!!$R1 3219
3 TraesCS3A01G144500 chr1D 341027311 341029723 2412 True 3354.00 3354 91.6600 560 3003 1 chr1D.!!$R1 2443
4 TraesCS3A01G144500 chr1D 465900517 465902891 2374 True 3251.00 3251 91.3870 560 2935 1 chr1D.!!$R2 2375
5 TraesCS3A01G144500 chr1D 430228212 430229412 1200 False 695.00 1288 92.0025 1940 3383 2 chr1D.!!$F1 1443
6 TraesCS3A01G144500 chr3B 172979298 172981581 2283 True 3338.00 3338 93.0510 560 2844 1 chr3B.!!$R2 2284
7 TraesCS3A01G144500 chr3B 146979822 146982217 2395 True 3295.00 3295 91.4700 560 2968 1 chr3B.!!$R1 2408
8 TraesCS3A01G144500 chr3B 172170758 172173038 2280 False 3273.00 3273 92.5600 559 2842 1 chr3B.!!$F1 2283
9 TraesCS3A01G144500 chr3D 121266272 121268572 2300 True 3326.00 3326 92.7550 560 2862 1 chr3D.!!$R1 2302
10 TraesCS3A01G144500 chr3D 121332227 121334527 2300 True 3243.00 3243 92.1040 560 2862 1 chr3D.!!$R2 2302
11 TraesCS3A01G144500 chr1B 642698856 642701230 2374 True 3217.00 3217 91.1340 560 2935 1 chr1B.!!$R2 2375
12 TraesCS3A01G144500 chr5A 680705478 680706041 563 False 1003.00 1003 98.7610 1 565 1 chr5A.!!$F3 564
13 TraesCS3A01G144500 chr5A 242365558 242366113 555 False 588.00 588 85.7650 1 561 1 chr5A.!!$F1 560
14 TraesCS3A01G144500 chr6A 201082787 201083347 560 False 998.00 998 98.7520 1 561 1 chr6A.!!$F2 560
15 TraesCS3A01G144500 chr1A 440712111 440712901 790 True 881.00 881 86.6670 2181 3003 1 chr1A.!!$R2 822
16 TraesCS3A01G144500 chr5D 544394449 544395002 553 True 822.00 822 93.2860 1 565 1 chr5D.!!$R1 564
17 TraesCS3A01G144500 chr2D 450446727 450447284 557 True 717.00 717 89.8580 1 561 1 chr2D.!!$R1 560
18 TraesCS3A01G144500 chr5B 507797849 507798462 613 True 474.50 701 94.5575 3125 3779 2 chr5B.!!$R1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.037326 GTGATGAGGTTGGCGAGTGA 60.037 55.0 0.0 0.0 0.0 3.41 F
1385 1387 0.107508 CTGATGGACGGCATGAAGGT 60.108 55.0 0.0 0.0 0.0 3.50 F
2424 2426 0.250338 GGTTCACTTCCGGCTTCAGT 60.250 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2057 0.458543 GCGCCTTGTCGAAGATCTCA 60.459 55.000 0.00 0.0 40.67 3.27 R
2615 2617 0.960861 TCTGATGTCGGTGTCGCTCT 60.961 55.000 0.00 0.0 36.13 4.09 R
3431 3487 3.144125 TGGCCTCTGGATAAGGGTAGTAT 59.856 47.826 3.32 0.0 34.26 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 0.390866 ATCACGAGCTGGTCTTGCTG 60.391 55.000 8.31 0.00 41.30 4.41
126 127 4.803426 CACCTCGACGGCTGCCTC 62.803 72.222 17.92 12.01 35.61 4.70
128 129 4.803426 CCTCGACGGCTGCCTCAC 62.803 72.222 17.92 6.82 0.00 3.51
129 130 4.803426 CTCGACGGCTGCCTCACC 62.803 72.222 17.92 1.94 0.00 4.02
136 137 4.021925 GCTGCCTCACCGGTTCCT 62.022 66.667 2.97 0.00 34.25 3.36
137 138 2.750350 CTGCCTCACCGGTTCCTT 59.250 61.111 2.97 0.00 34.25 3.36
138 139 1.672356 CTGCCTCACCGGTTCCTTG 60.672 63.158 2.97 0.00 34.25 3.61
139 140 3.056328 GCCTCACCGGTTCCTTGC 61.056 66.667 2.97 0.00 34.25 4.01
140 141 2.429930 CCTCACCGGTTCCTTGCA 59.570 61.111 2.97 0.00 0.00 4.08
141 142 1.002134 CCTCACCGGTTCCTTGCAT 60.002 57.895 2.97 0.00 0.00 3.96
142 143 1.308069 CCTCACCGGTTCCTTGCATG 61.308 60.000 2.97 0.00 0.00 4.06
143 144 0.321564 CTCACCGGTTCCTTGCATGA 60.322 55.000 2.97 0.00 0.00 3.07
144 145 0.327924 TCACCGGTTCCTTGCATGAT 59.672 50.000 2.97 0.00 0.00 2.45
145 146 0.452987 CACCGGTTCCTTGCATGATG 59.547 55.000 2.97 0.00 0.00 3.07
146 147 0.680921 ACCGGTTCCTTGCATGATGG 60.681 55.000 0.00 0.00 0.00 3.51
147 148 0.680921 CCGGTTCCTTGCATGATGGT 60.681 55.000 0.00 0.00 0.00 3.55
148 149 0.452987 CGGTTCCTTGCATGATGGTG 59.547 55.000 0.00 0.00 0.00 4.17
149 150 1.549203 GGTTCCTTGCATGATGGTGT 58.451 50.000 0.00 0.00 0.00 4.16
150 151 1.203052 GGTTCCTTGCATGATGGTGTG 59.797 52.381 0.00 0.00 0.00 3.82
151 152 0.889994 TTCCTTGCATGATGGTGTGC 59.110 50.000 0.00 0.00 41.61 4.57
152 153 1.138036 CCTTGCATGATGGTGTGCG 59.862 57.895 0.00 0.00 44.11 5.34
153 154 1.138036 CTTGCATGATGGTGTGCGG 59.862 57.895 0.00 0.00 44.11 5.69
154 155 1.588824 CTTGCATGATGGTGTGCGGT 61.589 55.000 0.00 0.00 44.11 5.68
155 156 1.864725 TTGCATGATGGTGTGCGGTG 61.865 55.000 0.00 0.00 44.11 4.94
156 157 3.055080 GCATGATGGTGTGCGGTGG 62.055 63.158 0.00 0.00 0.00 4.61
157 158 1.675310 CATGATGGTGTGCGGTGGT 60.675 57.895 0.00 0.00 0.00 4.16
158 159 1.675310 ATGATGGTGTGCGGTGGTG 60.675 57.895 0.00 0.00 0.00 4.17
159 160 3.737172 GATGGTGTGCGGTGGTGC 61.737 66.667 0.00 0.00 0.00 5.01
160 161 4.269523 ATGGTGTGCGGTGGTGCT 62.270 61.111 0.00 0.00 35.36 4.40
161 162 3.790416 ATGGTGTGCGGTGGTGCTT 62.790 57.895 0.00 0.00 35.36 3.91
162 163 3.660111 GGTGTGCGGTGGTGCTTC 61.660 66.667 0.00 0.00 35.36 3.86
163 164 3.660111 GTGTGCGGTGGTGCTTCC 61.660 66.667 0.00 0.00 35.36 3.46
164 165 4.182433 TGTGCGGTGGTGCTTCCA 62.182 61.111 0.00 0.00 45.01 3.53
171 172 4.947147 TGGTGCTTCCACGGTGCC 62.947 66.667 1.68 0.00 43.00 5.01
180 181 4.805231 CACGGTGCCGGCGACATA 62.805 66.667 23.90 0.00 44.69 2.29
181 182 4.508128 ACGGTGCCGGCGACATAG 62.508 66.667 23.90 16.64 44.69 2.23
190 191 4.320971 GCGACATAGCCGTACAGG 57.679 61.111 0.00 0.00 44.97 4.00
199 200 3.784412 CCGTACAGGCCGTTTGCG 61.784 66.667 5.57 5.31 42.61 4.85
209 210 4.705519 CGTTTGCGGCAAGGGCAG 62.706 66.667 15.78 3.43 42.12 4.85
210 211 4.362476 GTTTGCGGCAAGGGCAGG 62.362 66.667 15.78 0.00 42.12 4.85
211 212 4.594854 TTTGCGGCAAGGGCAGGA 62.595 61.111 15.78 0.00 42.12 3.86
212 213 4.594854 TTGCGGCAAGGGCAGGAA 62.595 61.111 12.11 0.00 42.55 3.36
226 227 2.046217 GGAACGGCCTGGGTCTTC 60.046 66.667 0.00 0.00 0.00 2.87
227 228 2.046217 GAACGGCCTGGGTCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
228 229 2.852075 AACGGCCTGGGTCTTCCA 60.852 61.111 0.00 0.00 44.79 3.53
229 230 2.198304 GAACGGCCTGGGTCTTCCAT 62.198 60.000 0.00 0.00 46.01 3.41
230 231 0.912487 AACGGCCTGGGTCTTCCATA 60.912 55.000 0.00 0.00 46.01 2.74
231 232 1.338136 ACGGCCTGGGTCTTCCATAG 61.338 60.000 0.00 0.00 46.01 2.23
232 233 1.149401 GGCCTGGGTCTTCCATAGC 59.851 63.158 0.00 0.00 46.01 2.97
233 234 1.635817 GGCCTGGGTCTTCCATAGCA 61.636 60.000 0.00 0.00 46.01 3.49
234 235 0.179034 GCCTGGGTCTTCCATAGCAG 60.179 60.000 0.00 0.00 46.01 4.24
235 236 0.471617 CCTGGGTCTTCCATAGCAGG 59.528 60.000 0.00 0.00 46.01 4.85
236 237 1.500474 CTGGGTCTTCCATAGCAGGA 58.500 55.000 0.00 0.00 46.01 3.86
237 238 1.839994 CTGGGTCTTCCATAGCAGGAA 59.160 52.381 5.37 5.37 46.01 3.36
252 253 2.973420 GGAAGTTATCCCGCGTGAG 58.027 57.895 4.92 0.00 43.00 3.51
253 254 0.458669 GGAAGTTATCCCGCGTGAGA 59.541 55.000 4.92 0.00 43.00 3.27
254 255 1.557651 GAAGTTATCCCGCGTGAGAC 58.442 55.000 4.92 2.34 0.00 3.36
255 256 0.179145 AAGTTATCCCGCGTGAGACG 60.179 55.000 4.92 0.00 45.88 4.18
256 257 1.588139 GTTATCCCGCGTGAGACGG 60.588 63.158 4.92 0.00 45.79 4.79
262 263 2.944557 CGCGTGAGACGGATCGTG 60.945 66.667 0.00 0.00 42.82 4.35
263 264 2.483745 GCGTGAGACGGATCGTGA 59.516 61.111 0.00 0.00 42.82 4.35
264 265 1.064296 GCGTGAGACGGATCGTGAT 59.936 57.895 0.00 0.00 42.82 3.06
265 266 1.202973 GCGTGAGACGGATCGTGATG 61.203 60.000 0.00 0.00 42.82 3.07
266 267 0.377203 CGTGAGACGGATCGTGATGA 59.623 55.000 0.00 0.00 41.37 2.92
267 268 1.595732 CGTGAGACGGATCGTGATGAG 60.596 57.143 0.00 0.00 41.37 2.90
268 269 1.025041 TGAGACGGATCGTGATGAGG 58.975 55.000 0.00 0.00 41.37 3.86
269 270 1.025812 GAGACGGATCGTGATGAGGT 58.974 55.000 0.00 0.00 41.37 3.85
270 271 1.405821 GAGACGGATCGTGATGAGGTT 59.594 52.381 0.00 0.00 41.37 3.50
271 272 1.135139 AGACGGATCGTGATGAGGTTG 59.865 52.381 0.00 0.00 41.37 3.77
272 273 0.175760 ACGGATCGTGATGAGGTTGG 59.824 55.000 0.00 0.00 39.18 3.77
273 274 1.154205 CGGATCGTGATGAGGTTGGC 61.154 60.000 0.00 0.00 0.00 4.52
274 275 1.154205 GGATCGTGATGAGGTTGGCG 61.154 60.000 0.00 0.00 0.00 5.69
275 276 0.179111 GATCGTGATGAGGTTGGCGA 60.179 55.000 0.00 0.00 0.00 5.54
276 277 0.179100 ATCGTGATGAGGTTGGCGAG 60.179 55.000 0.00 0.00 0.00 5.03
277 278 1.079819 CGTGATGAGGTTGGCGAGT 60.080 57.895 0.00 0.00 0.00 4.18
278 279 1.354337 CGTGATGAGGTTGGCGAGTG 61.354 60.000 0.00 0.00 0.00 3.51
279 280 0.037326 GTGATGAGGTTGGCGAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
280 281 0.037326 TGATGAGGTTGGCGAGTGAC 60.037 55.000 0.00 0.00 0.00 3.67
281 282 1.078759 GATGAGGTTGGCGAGTGACG 61.079 60.000 0.00 0.00 45.66 4.35
282 283 1.816863 ATGAGGTTGGCGAGTGACGT 61.817 55.000 0.00 0.00 44.60 4.34
283 284 2.022129 GAGGTTGGCGAGTGACGTG 61.022 63.158 0.00 0.00 44.60 4.49
284 285 2.028484 GGTTGGCGAGTGACGTGA 59.972 61.111 0.00 0.00 44.60 4.35
285 286 2.308039 GGTTGGCGAGTGACGTGAC 61.308 63.158 0.00 0.00 44.60 3.67
286 287 1.590525 GTTGGCGAGTGACGTGACA 60.591 57.895 8.15 0.00 44.60 3.58
287 288 1.299850 TTGGCGAGTGACGTGACAG 60.300 57.895 8.15 1.94 44.60 3.51
288 289 1.730451 TTGGCGAGTGACGTGACAGA 61.730 55.000 8.15 0.00 44.60 3.41
289 290 1.442857 GGCGAGTGACGTGACAGAG 60.443 63.158 8.15 0.00 44.60 3.35
290 291 1.574925 GCGAGTGACGTGACAGAGA 59.425 57.895 8.15 0.00 44.60 3.10
291 292 0.169230 GCGAGTGACGTGACAGAGAT 59.831 55.000 8.15 0.00 44.60 2.75
292 293 1.792273 GCGAGTGACGTGACAGAGATC 60.792 57.143 8.15 0.00 44.60 2.75
293 294 1.527995 CGAGTGACGTGACAGAGATCG 60.528 57.143 8.15 3.57 37.22 3.69
294 295 0.805614 AGTGACGTGACAGAGATCGG 59.194 55.000 8.15 0.00 0.00 4.18
295 296 0.803117 GTGACGTGACAGAGATCGGA 59.197 55.000 0.00 0.00 0.00 4.55
296 297 1.087501 TGACGTGACAGAGATCGGAG 58.912 55.000 0.00 0.00 0.00 4.63
297 298 0.248296 GACGTGACAGAGATCGGAGC 60.248 60.000 0.00 0.00 0.00 4.70
298 299 0.678366 ACGTGACAGAGATCGGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
299 300 0.248417 CGTGACAGAGATCGGAGCTG 60.248 60.000 0.00 2.13 35.81 4.24
300 301 1.098869 GTGACAGAGATCGGAGCTGA 58.901 55.000 0.00 0.00 33.94 4.26
301 302 1.474478 GTGACAGAGATCGGAGCTGAA 59.526 52.381 0.00 0.00 33.94 3.02
302 303 1.747924 TGACAGAGATCGGAGCTGAAG 59.252 52.381 0.00 0.00 33.94 3.02
303 304 2.020720 GACAGAGATCGGAGCTGAAGA 58.979 52.381 0.00 0.00 33.94 2.87
304 305 2.023673 ACAGAGATCGGAGCTGAAGAG 58.976 52.381 0.00 0.00 33.94 2.85
305 306 1.032014 AGAGATCGGAGCTGAAGAGC 58.968 55.000 0.00 0.00 46.64 4.09
313 314 2.511145 GCTGAAGAGCTGGAGCCG 60.511 66.667 0.00 0.00 42.52 5.52
314 315 2.186384 CTGAAGAGCTGGAGCCGG 59.814 66.667 0.00 0.00 43.38 6.13
340 341 3.884774 GTGCCGGCCATGGGGATA 61.885 66.667 26.77 0.00 35.59 2.59
341 342 3.569210 TGCCGGCCATGGGGATAG 61.569 66.667 26.77 0.00 35.59 2.08
342 343 4.351054 GCCGGCCATGGGGATAGG 62.351 72.222 18.11 0.00 35.59 2.57
343 344 2.529136 CCGGCCATGGGGATAGGA 60.529 66.667 15.13 0.00 35.59 2.94
344 345 1.925455 CCGGCCATGGGGATAGGAT 60.925 63.158 15.13 0.00 35.59 3.24
345 346 1.604378 CGGCCATGGGGATAGGATC 59.396 63.158 15.13 0.00 35.59 3.36
346 347 0.911525 CGGCCATGGGGATAGGATCT 60.912 60.000 15.13 0.00 35.59 2.75
347 348 1.376649 GGCCATGGGGATAGGATCTT 58.623 55.000 15.13 0.00 35.59 2.40
348 349 1.713078 GGCCATGGGGATAGGATCTTT 59.287 52.381 15.13 0.00 35.59 2.52
349 350 2.110721 GGCCATGGGGATAGGATCTTTT 59.889 50.000 15.13 0.00 35.59 2.27
350 351 3.438520 GGCCATGGGGATAGGATCTTTTT 60.439 47.826 15.13 0.00 35.59 1.94
351 352 3.575687 GCCATGGGGATAGGATCTTTTTG 59.424 47.826 15.13 0.00 35.59 2.44
352 353 3.575687 CCATGGGGATAGGATCTTTTTGC 59.424 47.826 2.85 0.00 35.59 3.68
353 354 4.477249 CATGGGGATAGGATCTTTTTGCT 58.523 43.478 0.00 0.00 0.00 3.91
354 355 4.170468 TGGGGATAGGATCTTTTTGCTC 57.830 45.455 0.00 0.00 0.00 4.26
355 356 3.788142 TGGGGATAGGATCTTTTTGCTCT 59.212 43.478 0.00 0.00 0.00 4.09
356 357 4.140536 GGGGATAGGATCTTTTTGCTCTG 58.859 47.826 0.00 0.00 0.00 3.35
357 358 4.385754 GGGGATAGGATCTTTTTGCTCTGT 60.386 45.833 0.00 0.00 0.00 3.41
358 359 5.163195 GGGGATAGGATCTTTTTGCTCTGTA 60.163 44.000 0.00 0.00 0.00 2.74
359 360 6.466470 GGGGATAGGATCTTTTTGCTCTGTAT 60.466 42.308 0.00 0.00 0.00 2.29
360 361 7.256691 GGGGATAGGATCTTTTTGCTCTGTATA 60.257 40.741 0.00 0.00 0.00 1.47
361 362 7.604545 GGGATAGGATCTTTTTGCTCTGTATAC 59.395 40.741 0.00 0.00 0.00 1.47
362 363 7.604545 GGATAGGATCTTTTTGCTCTGTATACC 59.395 40.741 0.00 0.00 0.00 2.73
363 364 6.313519 AGGATCTTTTTGCTCTGTATACCA 57.686 37.500 0.00 0.00 0.00 3.25
364 365 6.721318 AGGATCTTTTTGCTCTGTATACCAA 58.279 36.000 0.00 0.00 0.00 3.67
365 366 6.825721 AGGATCTTTTTGCTCTGTATACCAAG 59.174 38.462 0.00 0.00 0.00 3.61
366 367 6.599638 GGATCTTTTTGCTCTGTATACCAAGT 59.400 38.462 0.00 0.00 0.00 3.16
367 368 7.201652 GGATCTTTTTGCTCTGTATACCAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
368 369 6.530120 TCTTTTTGCTCTGTATACCAAGTCA 58.470 36.000 0.00 0.00 0.00 3.41
369 370 6.650807 TCTTTTTGCTCTGTATACCAAGTCAG 59.349 38.462 0.00 0.00 0.00 3.51
370 371 3.526931 TGCTCTGTATACCAAGTCAGC 57.473 47.619 0.00 0.00 0.00 4.26
371 372 3.099905 TGCTCTGTATACCAAGTCAGCT 58.900 45.455 0.00 0.00 0.00 4.24
372 373 4.278310 TGCTCTGTATACCAAGTCAGCTA 58.722 43.478 0.00 0.00 0.00 3.32
373 374 4.339530 TGCTCTGTATACCAAGTCAGCTAG 59.660 45.833 0.00 0.00 0.00 3.42
374 375 4.580995 GCTCTGTATACCAAGTCAGCTAGA 59.419 45.833 0.00 0.00 0.00 2.43
375 376 5.242838 GCTCTGTATACCAAGTCAGCTAGAT 59.757 44.000 0.00 0.00 0.00 1.98
376 377 6.641169 TCTGTATACCAAGTCAGCTAGATG 57.359 41.667 0.24 0.24 0.00 2.90
377 378 5.536538 TCTGTATACCAAGTCAGCTAGATGG 59.463 44.000 8.37 5.68 37.19 3.51
378 379 5.454966 TGTATACCAAGTCAGCTAGATGGA 58.545 41.667 8.37 0.00 35.16 3.41
379 380 5.897250 TGTATACCAAGTCAGCTAGATGGAA 59.103 40.000 8.37 0.00 35.16 3.53
380 381 5.957771 ATACCAAGTCAGCTAGATGGAAA 57.042 39.130 8.37 0.00 35.16 3.13
381 382 4.851639 ACCAAGTCAGCTAGATGGAAAT 57.148 40.909 8.37 0.00 35.16 2.17
382 383 4.521146 ACCAAGTCAGCTAGATGGAAATG 58.479 43.478 8.37 2.95 35.16 2.32
383 384 3.314635 CCAAGTCAGCTAGATGGAAATGC 59.685 47.826 8.37 0.00 32.82 3.56
384 385 3.205784 AGTCAGCTAGATGGAAATGCC 57.794 47.619 8.37 0.00 37.10 4.40
385 386 1.869767 GTCAGCTAGATGGAAATGCCG 59.130 52.381 8.37 0.00 40.66 5.69
386 387 1.486310 TCAGCTAGATGGAAATGCCGT 59.514 47.619 8.37 0.00 40.66 5.68
387 388 1.600957 CAGCTAGATGGAAATGCCGTG 59.399 52.381 0.00 0.00 40.66 4.94
388 389 1.486310 AGCTAGATGGAAATGCCGTGA 59.514 47.619 0.00 0.00 40.66 4.35
389 390 2.105477 AGCTAGATGGAAATGCCGTGAT 59.895 45.455 0.00 0.00 40.66 3.06
390 391 2.225019 GCTAGATGGAAATGCCGTGATG 59.775 50.000 0.00 0.00 40.66 3.07
391 392 1.683943 AGATGGAAATGCCGTGATGG 58.316 50.000 0.00 0.00 40.66 3.51
402 403 2.961526 CCGTGATGGCTTACACTAGT 57.038 50.000 0.00 0.00 35.23 2.57
404 405 4.585955 CCGTGATGGCTTACACTAGTAT 57.414 45.455 0.00 0.00 35.23 2.12
405 406 4.945246 CCGTGATGGCTTACACTAGTATT 58.055 43.478 0.00 0.00 35.23 1.89
406 407 4.745125 CCGTGATGGCTTACACTAGTATTG 59.255 45.833 0.00 0.00 35.23 1.90
407 408 4.209288 CGTGATGGCTTACACTAGTATTGC 59.791 45.833 0.00 0.00 35.23 3.56
408 409 5.360591 GTGATGGCTTACACTAGTATTGCT 58.639 41.667 0.00 0.00 33.45 3.91
409 410 5.463724 GTGATGGCTTACACTAGTATTGCTC 59.536 44.000 0.00 0.00 33.45 4.26
410 411 5.128663 TGATGGCTTACACTAGTATTGCTCA 59.871 40.000 0.00 0.07 33.45 4.26
411 412 5.011090 TGGCTTACACTAGTATTGCTCAG 57.989 43.478 0.00 0.00 33.45 3.35
412 413 4.466370 TGGCTTACACTAGTATTGCTCAGT 59.534 41.667 0.00 0.00 33.45 3.41
413 414 5.046591 TGGCTTACACTAGTATTGCTCAGTT 60.047 40.000 0.00 0.00 33.45 3.16
414 415 5.875359 GGCTTACACTAGTATTGCTCAGTTT 59.125 40.000 0.00 0.00 33.45 2.66
415 416 7.039882 GGCTTACACTAGTATTGCTCAGTTTA 58.960 38.462 0.00 0.00 33.45 2.01
416 417 7.711339 GGCTTACACTAGTATTGCTCAGTTTAT 59.289 37.037 0.00 0.00 33.45 1.40
417 418 9.745880 GCTTACACTAGTATTGCTCAGTTTATA 57.254 33.333 0.00 0.00 31.58 0.98
431 432 9.750125 TGCTCAGTTTATATACATCAAGTACAG 57.250 33.333 0.00 0.00 35.05 2.74
432 433 9.197694 GCTCAGTTTATATACATCAAGTACAGG 57.802 37.037 0.00 0.00 35.05 4.00
442 443 6.169557 ACATCAAGTACAGGTTCAGTTACA 57.830 37.500 0.00 0.00 0.00 2.41
443 444 6.223852 ACATCAAGTACAGGTTCAGTTACAG 58.776 40.000 0.00 0.00 0.00 2.74
444 445 4.628074 TCAAGTACAGGTTCAGTTACAGC 58.372 43.478 0.00 0.00 0.00 4.40
445 446 4.344102 TCAAGTACAGGTTCAGTTACAGCT 59.656 41.667 0.00 0.00 0.00 4.24
446 447 4.522722 AGTACAGGTTCAGTTACAGCTC 57.477 45.455 0.00 0.00 0.00 4.09
447 448 3.895656 AGTACAGGTTCAGTTACAGCTCA 59.104 43.478 0.00 0.00 0.00 4.26
448 449 3.838244 ACAGGTTCAGTTACAGCTCAA 57.162 42.857 0.00 0.00 0.00 3.02
449 450 3.733337 ACAGGTTCAGTTACAGCTCAAG 58.267 45.455 0.00 0.00 0.00 3.02
450 451 2.481952 CAGGTTCAGTTACAGCTCAAGC 59.518 50.000 0.00 0.00 42.49 4.01
460 461 4.547859 GCTCAAGCGATGGTGGAT 57.452 55.556 0.00 0.00 0.00 3.41
461 462 3.686622 GCTCAAGCGATGGTGGATA 57.313 52.632 0.00 0.00 0.00 2.59
462 463 1.953559 GCTCAAGCGATGGTGGATAA 58.046 50.000 0.00 0.00 0.00 1.75
463 464 2.498167 GCTCAAGCGATGGTGGATAAT 58.502 47.619 0.00 0.00 0.00 1.28
464 465 2.880890 GCTCAAGCGATGGTGGATAATT 59.119 45.455 0.00 0.00 0.00 1.40
465 466 4.065088 GCTCAAGCGATGGTGGATAATTA 58.935 43.478 0.00 0.00 0.00 1.40
466 467 4.515191 GCTCAAGCGATGGTGGATAATTAA 59.485 41.667 0.00 0.00 0.00 1.40
467 468 5.334414 GCTCAAGCGATGGTGGATAATTAAG 60.334 44.000 0.00 0.00 0.00 1.85
468 469 5.924356 TCAAGCGATGGTGGATAATTAAGA 58.076 37.500 0.00 0.00 0.00 2.10
469 470 5.991606 TCAAGCGATGGTGGATAATTAAGAG 59.008 40.000 0.00 0.00 0.00 2.85
470 471 5.808366 AGCGATGGTGGATAATTAAGAGA 57.192 39.130 0.00 0.00 0.00 3.10
471 472 6.174720 AGCGATGGTGGATAATTAAGAGAA 57.825 37.500 0.00 0.00 0.00 2.87
472 473 6.591935 AGCGATGGTGGATAATTAAGAGAAA 58.408 36.000 0.00 0.00 0.00 2.52
473 474 6.708054 AGCGATGGTGGATAATTAAGAGAAAG 59.292 38.462 0.00 0.00 0.00 2.62
474 475 6.073003 GCGATGGTGGATAATTAAGAGAAAGG 60.073 42.308 0.00 0.00 0.00 3.11
475 476 6.992715 CGATGGTGGATAATTAAGAGAAAGGT 59.007 38.462 0.00 0.00 0.00 3.50
476 477 7.171678 CGATGGTGGATAATTAAGAGAAAGGTC 59.828 40.741 0.00 0.00 0.00 3.85
477 478 7.510675 TGGTGGATAATTAAGAGAAAGGTCT 57.489 36.000 0.00 0.00 36.55 3.85
497 498 6.385649 GTCTCTAGACCTTCCACATTCTAG 57.614 45.833 0.00 0.00 39.22 2.43
498 499 4.890581 TCTCTAGACCTTCCACATTCTAGC 59.109 45.833 0.00 0.00 38.21 3.42
499 500 4.610333 TCTAGACCTTCCACATTCTAGCA 58.390 43.478 0.00 0.00 38.21 3.49
500 501 3.618690 AGACCTTCCACATTCTAGCAC 57.381 47.619 0.00 0.00 0.00 4.40
501 502 3.177228 AGACCTTCCACATTCTAGCACT 58.823 45.455 0.00 0.00 0.00 4.40
502 503 4.353777 AGACCTTCCACATTCTAGCACTA 58.646 43.478 0.00 0.00 0.00 2.74
503 504 4.777896 AGACCTTCCACATTCTAGCACTAA 59.222 41.667 0.00 0.00 0.00 2.24
504 505 5.091261 ACCTTCCACATTCTAGCACTAAG 57.909 43.478 0.00 0.00 0.00 2.18
505 506 3.873952 CCTTCCACATTCTAGCACTAAGC 59.126 47.826 0.00 0.00 46.19 3.09
527 528 8.674263 AAGCTATAATGATCATAATAGGCAGC 57.326 34.615 9.04 10.59 0.00 5.25
528 529 7.799081 AGCTATAATGATCATAATAGGCAGCA 58.201 34.615 9.04 0.00 0.00 4.41
529 530 7.714377 AGCTATAATGATCATAATAGGCAGCAC 59.286 37.037 9.04 0.00 0.00 4.40
530 531 7.714377 GCTATAATGATCATAATAGGCAGCACT 59.286 37.037 9.04 0.00 0.00 4.40
534 535 8.874744 AATGATCATAATAGGCAGCACTAATT 57.125 30.769 9.04 0.00 0.00 1.40
535 536 7.677454 TGATCATAATAGGCAGCACTAATTG 57.323 36.000 0.00 0.00 0.00 2.32
536 537 7.452562 TGATCATAATAGGCAGCACTAATTGA 58.547 34.615 0.00 0.22 0.00 2.57
537 538 7.938490 TGATCATAATAGGCAGCACTAATTGAA 59.062 33.333 0.00 0.00 0.00 2.69
538 539 8.874744 ATCATAATAGGCAGCACTAATTGAAT 57.125 30.769 0.00 0.00 0.00 2.57
539 540 8.327941 TCATAATAGGCAGCACTAATTGAATC 57.672 34.615 0.00 0.00 0.00 2.52
540 541 7.391554 TCATAATAGGCAGCACTAATTGAATCC 59.608 37.037 0.00 0.00 0.00 3.01
541 542 3.370840 AGGCAGCACTAATTGAATCCA 57.629 42.857 0.00 0.00 0.00 3.41
542 543 3.700538 AGGCAGCACTAATTGAATCCAA 58.299 40.909 0.00 0.00 36.61 3.53
543 544 4.088634 AGGCAGCACTAATTGAATCCAAA 58.911 39.130 0.00 0.00 35.67 3.28
544 545 4.159135 AGGCAGCACTAATTGAATCCAAAG 59.841 41.667 0.00 0.00 35.67 2.77
545 546 4.427312 GCAGCACTAATTGAATCCAAAGG 58.573 43.478 0.00 0.00 35.67 3.11
546 547 4.158394 GCAGCACTAATTGAATCCAAAGGA 59.842 41.667 0.00 0.00 35.67 3.36
547 548 5.163478 GCAGCACTAATTGAATCCAAAGGAT 60.163 40.000 0.00 0.00 45.46 3.24
548 549 6.270815 CAGCACTAATTGAATCCAAAGGATG 58.729 40.000 0.00 0.00 42.27 3.51
549 550 5.045872 GCACTAATTGAATCCAAAGGATGC 58.954 41.667 0.00 0.00 42.27 3.91
550 551 5.276270 CACTAATTGAATCCAAAGGATGCG 58.724 41.667 0.00 0.00 42.27 4.73
551 552 4.949856 ACTAATTGAATCCAAAGGATGCGT 59.050 37.500 0.00 0.00 42.27 5.24
552 553 4.806640 AATTGAATCCAAAGGATGCGTT 57.193 36.364 0.00 0.00 42.27 4.84
553 554 3.574284 TTGAATCCAAAGGATGCGTTG 57.426 42.857 5.92 5.92 42.27 4.10
554 555 1.202114 TGAATCCAAAGGATGCGTTGC 59.798 47.619 7.36 0.00 42.27 4.17
555 556 1.474077 GAATCCAAAGGATGCGTTGCT 59.526 47.619 7.36 0.00 42.27 3.91
556 557 1.549203 ATCCAAAGGATGCGTTGCTT 58.451 45.000 7.36 0.00 41.43 3.91
557 558 2.192664 TCCAAAGGATGCGTTGCTTA 57.807 45.000 7.36 0.00 34.49 3.09
584 585 3.660111 GCCACAACACGGTCTGCC 61.660 66.667 0.00 0.00 0.00 4.85
592 593 2.603473 ACGGTCTGCCTGGCACTA 60.603 61.111 19.30 6.03 33.79 2.74
679 680 1.209383 CATCACCGACGTCGTGTCT 59.791 57.895 33.49 19.49 45.87 3.41
733 734 0.674895 GCGTGCACATCCTTCCTCTT 60.675 55.000 18.64 0.00 0.00 2.85
745 746 0.748450 TTCCTCTTGACGACACGGTT 59.252 50.000 0.00 0.00 0.00 4.44
799 800 1.275291 CTCAAGCCCTACTTCGTGGAA 59.725 52.381 0.00 0.00 36.04 3.53
814 815 4.468689 GAAGCCTACCGCCCGCTT 62.469 66.667 0.00 0.00 45.24 4.68
913 914 3.770040 TACTGCATCGTGGCGCCT 61.770 61.111 29.70 3.37 36.28 5.52
949 950 2.266689 GAGGGCGAGCCGGTAAAA 59.733 61.111 1.90 0.00 36.85 1.52
1075 1077 6.351711 CATCCACAGATCTTCAAGACCATTA 58.648 40.000 0.00 0.00 0.00 1.90
1311 1313 4.235372 AGATCGACTCCATTTCCCCTAAT 58.765 43.478 0.00 0.00 0.00 1.73
1359 1361 3.120105 CGCATCGTCTCCCAGCTA 58.880 61.111 0.00 0.00 0.00 3.32
1385 1387 0.107508 CTGATGGACGGCATGAAGGT 60.108 55.000 0.00 0.00 0.00 3.50
1486 1488 2.026157 GCGAGATCGACATCGGCA 59.974 61.111 19.22 0.00 43.02 5.69
1549 1551 3.068590 CACCAAAAACATGAAGCTGGACT 59.931 43.478 0.00 0.00 0.00 3.85
1550 1552 3.706086 ACCAAAAACATGAAGCTGGACTT 59.294 39.130 0.00 0.00 42.98 3.01
1554 1556 3.446442 AACATGAAGCTGGACTTGGAT 57.554 42.857 0.00 0.00 39.29 3.41
1619 1621 4.492160 CGACTTGGCCGCGCTCTA 62.492 66.667 5.56 0.00 0.00 2.43
1635 1637 2.752640 TACACTGAGGCGGCGCTA 60.753 61.111 32.30 16.99 0.00 4.26
1903 1905 1.000394 TCGAGAAGTTTGGCATGTCGA 60.000 47.619 4.23 4.23 32.88 4.20
1914 1916 1.292223 CATGTCGACGTCCAAGGGT 59.708 57.895 7.47 0.00 0.00 4.34
2075 2077 0.458543 GAGATCTTCGACAAGGCGCA 60.459 55.000 10.83 0.00 0.00 6.09
2084 2086 2.434884 CAAGGCGCATCAGTCCGT 60.435 61.111 10.83 0.00 0.00 4.69
2127 2129 0.322975 AGCTCGACTCCATTGCAACT 59.677 50.000 0.00 0.00 0.00 3.16
2193 2195 1.123861 TCCTGAACCAGCTGCTCACT 61.124 55.000 8.66 0.00 0.00 3.41
2307 2309 2.166829 CGCCTAGACCAGCTCATCTAT 58.833 52.381 4.32 0.00 0.00 1.98
2316 2318 5.016782 AGACCAGCTCATCTATATCCCCTTA 59.983 44.000 0.00 0.00 0.00 2.69
2352 2354 1.744798 CGGCATCAGATCTTCAAGGCA 60.745 52.381 0.00 0.00 0.00 4.75
2424 2426 0.250338 GGTTCACTTCCGGCTTCAGT 60.250 55.000 0.00 0.00 0.00 3.41
2465 2467 3.685435 CCAGAGGGCGTGCAAATT 58.315 55.556 0.00 0.00 0.00 1.82
2514 2516 1.074926 GGAGAGGCAGAGGATGGGA 60.075 63.158 0.00 0.00 0.00 4.37
2644 2646 2.897969 ACCGACATCAGAAAGTACCAGT 59.102 45.455 0.00 0.00 0.00 4.00
2646 2648 3.172050 CGACATCAGAAAGTACCAGTCG 58.828 50.000 0.00 0.00 41.00 4.18
2680 2682 1.553690 GCAGCAGTCTAGGGGGTTCA 61.554 60.000 0.00 0.00 0.00 3.18
2783 2785 4.462834 AGACGATCTGTACAAGTGATCCAA 59.537 41.667 14.61 0.00 34.70 3.53
3012 3050 6.332504 AGCGTTAACTGAATTGTCGATTAG 57.667 37.500 3.71 0.00 0.00 1.73
3025 3063 3.442100 GTCGATTAGACGGAACCGAAAT 58.558 45.455 20.14 14.50 40.43 2.17
3043 3081 8.556213 ACCGAAATAATAAGCTTCTTGTTGTA 57.444 30.769 0.00 0.00 0.00 2.41
3054 3092 7.010339 AGCTTCTTGTTGTACTTTCCTAGAT 57.990 36.000 0.00 0.00 0.00 1.98
3059 3097 7.386851 TCTTGTTGTACTTTCCTAGATTCTGG 58.613 38.462 0.00 0.00 0.00 3.86
3073 3111 5.029807 AGATTCTGGAAACTAGCCTAAGC 57.970 43.478 0.00 0.00 40.32 3.09
3074 3112 2.961526 TCTGGAAACTAGCCTAAGCG 57.038 50.000 0.00 0.00 46.67 4.68
3075 3113 2.176889 TCTGGAAACTAGCCTAAGCGT 58.823 47.619 0.00 0.00 46.67 5.07
3076 3114 2.565834 TCTGGAAACTAGCCTAAGCGTT 59.434 45.455 0.00 0.00 46.67 4.84
3077 3115 3.765511 TCTGGAAACTAGCCTAAGCGTTA 59.234 43.478 0.00 0.00 46.67 3.18
3078 3116 4.221262 TCTGGAAACTAGCCTAAGCGTTAA 59.779 41.667 0.00 0.00 46.67 2.01
3079 3117 4.248058 TGGAAACTAGCCTAAGCGTTAAC 58.752 43.478 0.00 0.00 46.67 2.01
3080 3118 4.020839 TGGAAACTAGCCTAAGCGTTAACT 60.021 41.667 3.71 0.00 46.67 2.24
3081 3119 4.329256 GGAAACTAGCCTAAGCGTTAACTG 59.671 45.833 3.71 0.00 46.67 3.16
3082 3120 4.796038 AACTAGCCTAAGCGTTAACTGA 57.204 40.909 3.71 0.00 46.67 3.41
3083 3121 4.796038 ACTAGCCTAAGCGTTAACTGAA 57.204 40.909 3.71 0.00 46.67 3.02
3084 3122 4.745649 ACTAGCCTAAGCGTTAACTGAAG 58.254 43.478 3.71 0.00 46.67 3.02
3085 3123 3.679824 AGCCTAAGCGTTAACTGAAGT 57.320 42.857 3.71 0.00 46.67 3.01
3086 3124 4.796038 AGCCTAAGCGTTAACTGAAGTA 57.204 40.909 3.71 0.00 46.67 2.24
3087 3125 5.143376 AGCCTAAGCGTTAACTGAAGTAA 57.857 39.130 3.71 0.00 46.67 2.24
3088 3126 5.731591 AGCCTAAGCGTTAACTGAAGTAAT 58.268 37.500 3.71 0.00 46.67 1.89
3089 3127 6.870769 AGCCTAAGCGTTAACTGAAGTAATA 58.129 36.000 3.71 0.00 46.67 0.98
3090 3128 7.325694 AGCCTAAGCGTTAACTGAAGTAATAA 58.674 34.615 3.71 0.00 46.67 1.40
3091 3129 7.491696 AGCCTAAGCGTTAACTGAAGTAATAAG 59.508 37.037 3.71 0.00 46.67 1.73
3092 3130 7.619328 CCTAAGCGTTAACTGAAGTAATAAGC 58.381 38.462 3.71 0.00 0.00 3.09
3093 3131 7.491696 CCTAAGCGTTAACTGAAGTAATAAGCT 59.508 37.037 3.71 0.00 0.00 3.74
3094 3132 6.889019 AGCGTTAACTGAAGTAATAAGCTC 57.111 37.500 3.71 0.00 0.00 4.09
3095 3133 5.811100 AGCGTTAACTGAAGTAATAAGCTCC 59.189 40.000 3.71 0.00 0.00 4.70
3096 3134 5.811100 GCGTTAACTGAAGTAATAAGCTCCT 59.189 40.000 3.71 0.00 0.00 3.69
3097 3135 6.313164 GCGTTAACTGAAGTAATAAGCTCCTT 59.687 38.462 3.71 0.00 0.00 3.36
3098 3136 7.674240 GCGTTAACTGAAGTAATAAGCTCCTTG 60.674 40.741 3.71 0.00 0.00 3.61
3099 3137 7.331193 CGTTAACTGAAGTAATAAGCTCCTTGT 59.669 37.037 3.71 0.00 0.00 3.16
3100 3138 9.000486 GTTAACTGAAGTAATAAGCTCCTTGTT 58.000 33.333 0.00 0.00 0.00 2.83
3101 3139 7.440523 AACTGAAGTAATAAGCTCCTTGTTG 57.559 36.000 0.00 0.00 0.00 3.33
3102 3140 6.534634 ACTGAAGTAATAAGCTCCTTGTTGT 58.465 36.000 0.00 0.00 0.00 3.32
3103 3141 7.676947 ACTGAAGTAATAAGCTCCTTGTTGTA 58.323 34.615 0.00 0.00 0.00 2.41
3104 3142 7.819900 ACTGAAGTAATAAGCTCCTTGTTGTAG 59.180 37.037 0.00 0.00 0.00 2.74
3105 3143 7.676947 TGAAGTAATAAGCTCCTTGTTGTAGT 58.323 34.615 0.00 0.00 0.00 2.73
3106 3144 8.154856 TGAAGTAATAAGCTCCTTGTTGTAGTT 58.845 33.333 0.00 0.00 0.00 2.24
3107 3145 8.919777 AAGTAATAAGCTCCTTGTTGTAGTTT 57.080 30.769 0.00 0.00 0.00 2.66
3108 3146 8.324163 AGTAATAAGCTCCTTGTTGTAGTTTG 57.676 34.615 0.00 0.00 0.00 2.93
3109 3147 7.937394 AGTAATAAGCTCCTTGTTGTAGTTTGT 59.063 33.333 0.00 0.00 0.00 2.83
3110 3148 9.211485 GTAATAAGCTCCTTGTTGTAGTTTGTA 57.789 33.333 0.00 0.00 0.00 2.41
3152 3190 0.673022 CCTCTCTGCTCCTGCACAAC 60.673 60.000 0.00 0.00 45.31 3.32
3195 3236 8.708378 AGGAAAATTTCAAGTCAATTTCTCCTT 58.292 29.630 8.09 0.00 37.56 3.36
3201 3242 9.671279 ATTTCAAGTCAATTTCTCCTTGTTTTT 57.329 25.926 0.00 0.00 36.53 1.94
3205 3246 8.811378 CAAGTCAATTTCTCCTTGTTTTTCTTC 58.189 33.333 0.00 0.00 31.79 2.87
3216 3257 7.491682 TCCTTGTTTTTCTTCTTGAATTCCAG 58.508 34.615 2.27 1.05 34.24 3.86
3220 3261 7.483307 TGTTTTTCTTCTTGAATTCCAGTCAG 58.517 34.615 2.27 3.07 34.24 3.51
3276 3317 3.503748 CAGGAGAAGAAAAGCAACCGAAT 59.496 43.478 0.00 0.00 0.00 3.34
3290 3331 4.384056 CAACCGAATCATAGATCCTGCTT 58.616 43.478 0.00 0.00 0.00 3.91
3293 3334 3.750130 CCGAATCATAGATCCTGCTTTGG 59.250 47.826 0.00 0.00 0.00 3.28
3295 3336 4.396522 GAATCATAGATCCTGCTTTGGCT 58.603 43.478 0.00 0.00 39.59 4.75
3302 3343 0.328258 TCCTGCTTTGGCTAACCCTC 59.672 55.000 0.00 0.00 39.59 4.30
3310 3351 4.340617 CTTTGGCTAACCCTCAATTACCA 58.659 43.478 0.00 0.00 33.59 3.25
3332 3387 5.263185 CAATAGTTGCTCCGGTTAATTTCG 58.737 41.667 0.00 0.00 0.00 3.46
3333 3388 2.081462 AGTTGCTCCGGTTAATTTCGG 58.919 47.619 0.00 8.08 46.89 4.30
3431 3487 6.939730 TGTTAGCCAACAATGAGTTTGATCTA 59.060 34.615 0.00 0.00 41.69 1.98
3591 3655 4.181010 CGGGCTGGGCATACTGCT 62.181 66.667 0.00 0.00 44.28 4.24
3594 3658 2.123428 GGCTGGGCATACTGCTTGG 61.123 63.158 0.00 0.00 44.28 3.61
3618 3682 5.066117 GTGCTCATGATCACATTCACAGAAT 59.934 40.000 21.73 0.00 34.15 2.40
3619 3683 5.065988 TGCTCATGATCACATTCACAGAATG 59.934 40.000 15.95 15.95 36.98 2.67
3620 3684 5.494632 TCATGATCACATTCACAGAATGC 57.505 39.130 17.12 4.47 35.00 3.56
3621 3685 4.944930 TCATGATCACATTCACAGAATGCA 59.055 37.500 17.12 9.14 35.00 3.96
3674 3746 7.504911 AGAAGGGAAGTTTCTTTAGGGTTTAAC 59.495 37.037 0.00 0.00 30.98 2.01
3718 3790 9.333724 AGGTTTCGAAGAGTTAAATTACTTTCA 57.666 29.630 0.00 0.00 38.43 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 1.067071 CGGAGTTCCTTCACTGGTACC 60.067 57.143 4.43 4.43 0.00 3.34
122 123 3.056328 GCAAGGAACCGGTGAGGC 61.056 66.667 8.52 4.33 46.52 4.70
124 125 0.321564 TCATGCAAGGAACCGGTGAG 60.322 55.000 8.52 0.00 0.00 3.51
125 126 0.327924 ATCATGCAAGGAACCGGTGA 59.672 50.000 8.52 0.00 0.00 4.02
126 127 0.452987 CATCATGCAAGGAACCGGTG 59.547 55.000 8.52 0.00 0.00 4.94
127 128 0.680921 CCATCATGCAAGGAACCGGT 60.681 55.000 0.00 0.00 0.00 5.28
128 129 0.680921 ACCATCATGCAAGGAACCGG 60.681 55.000 0.00 0.00 0.00 5.28
129 130 0.452987 CACCATCATGCAAGGAACCG 59.547 55.000 0.00 0.00 0.00 4.44
130 131 1.203052 CACACCATCATGCAAGGAACC 59.797 52.381 0.00 0.00 0.00 3.62
131 132 1.403249 GCACACCATCATGCAAGGAAC 60.403 52.381 0.00 0.00 41.65 3.62
132 133 0.889994 GCACACCATCATGCAAGGAA 59.110 50.000 0.00 0.00 41.65 3.36
133 134 1.307355 CGCACACCATCATGCAAGGA 61.307 55.000 0.00 0.00 42.17 3.36
134 135 1.138036 CGCACACCATCATGCAAGG 59.862 57.895 0.00 0.00 42.17 3.61
135 136 1.138036 CCGCACACCATCATGCAAG 59.862 57.895 0.00 0.00 42.17 4.01
136 137 1.603171 ACCGCACACCATCATGCAA 60.603 52.632 0.00 0.00 42.17 4.08
137 138 2.033911 ACCGCACACCATCATGCA 59.966 55.556 0.00 0.00 42.17 3.96
138 139 2.486504 CACCGCACACCATCATGC 59.513 61.111 0.00 0.00 38.52 4.06
139 140 1.675310 ACCACCGCACACCATCATG 60.675 57.895 0.00 0.00 0.00 3.07
140 141 1.675310 CACCACCGCACACCATCAT 60.675 57.895 0.00 0.00 0.00 2.45
141 142 2.281414 CACCACCGCACACCATCA 60.281 61.111 0.00 0.00 0.00 3.07
142 143 3.737172 GCACCACCGCACACCATC 61.737 66.667 0.00 0.00 0.00 3.51
143 144 3.790416 AAGCACCACCGCACACCAT 62.790 57.895 0.00 0.00 0.00 3.55
144 145 4.497984 AAGCACCACCGCACACCA 62.498 61.111 0.00 0.00 0.00 4.17
145 146 3.660111 GAAGCACCACCGCACACC 61.660 66.667 0.00 0.00 0.00 4.16
146 147 3.660111 GGAAGCACCACCGCACAC 61.660 66.667 0.00 0.00 38.79 3.82
147 148 4.182433 TGGAAGCACCACCGCACA 62.182 61.111 0.00 0.00 44.64 4.57
163 164 4.805231 TATGTCGCCGGCACCGTG 62.805 66.667 28.98 9.94 37.81 4.94
164 165 4.508128 CTATGTCGCCGGCACCGT 62.508 66.667 28.98 19.08 37.81 4.83
172 173 1.299926 CCTGTACGGCTATGTCGCC 60.300 63.158 0.00 0.00 46.68 5.54
173 174 4.320971 CCTGTACGGCTATGTCGC 57.679 61.111 0.00 0.00 32.11 5.19
182 183 3.784412 CGCAAACGGCCTGTACGG 61.784 66.667 0.00 0.00 40.31 4.02
192 193 4.705519 CTGCCCTTGCCGCAAACG 62.706 66.667 7.33 1.13 35.40 3.60
193 194 4.362476 CCTGCCCTTGCCGCAAAC 62.362 66.667 7.33 0.63 35.40 2.93
194 195 4.594854 TCCTGCCCTTGCCGCAAA 62.595 61.111 7.33 0.00 35.40 3.68
195 196 4.594854 TTCCTGCCCTTGCCGCAA 62.595 61.111 5.52 5.52 35.40 4.85
209 210 2.046217 GAAGACCCAGGCCGTTCC 60.046 66.667 0.00 0.00 0.00 3.62
210 211 2.046217 GGAAGACCCAGGCCGTTC 60.046 66.667 0.00 0.00 34.14 3.95
211 212 2.852075 TGGAAGACCCAGGCCGTT 60.852 61.111 0.00 0.00 40.82 4.44
224 225 3.071023 CGGGATAACTTCCTGCTATGGAA 59.929 47.826 6.32 6.32 43.99 3.53
225 226 2.632996 CGGGATAACTTCCTGCTATGGA 59.367 50.000 0.00 0.00 43.99 3.41
226 227 3.045601 CGGGATAACTTCCTGCTATGG 57.954 52.381 0.00 0.00 43.99 2.74
233 234 0.460311 CTCACGCGGGATAACTTCCT 59.540 55.000 13.56 0.00 44.75 3.36
234 235 0.458669 TCTCACGCGGGATAACTTCC 59.541 55.000 13.56 0.00 44.62 3.46
235 236 1.557651 GTCTCACGCGGGATAACTTC 58.442 55.000 13.56 0.00 0.00 3.01
236 237 0.179145 CGTCTCACGCGGGATAACTT 60.179 55.000 13.56 0.00 33.65 2.66
237 238 1.432251 CGTCTCACGCGGGATAACT 59.568 57.895 13.56 0.00 33.65 2.24
238 239 1.588139 CCGTCTCACGCGGGATAAC 60.588 63.158 13.56 12.97 44.98 1.89
239 240 2.802792 CCGTCTCACGCGGGATAA 59.197 61.111 13.56 0.00 44.98 1.75
245 246 2.648320 ATCACGATCCGTCTCACGCG 62.648 60.000 3.53 3.53 40.91 6.01
246 247 1.064296 ATCACGATCCGTCTCACGC 59.936 57.895 0.00 0.00 40.91 5.34
247 248 0.377203 TCATCACGATCCGTCTCACG 59.623 55.000 0.00 0.00 38.32 4.35
248 249 1.268794 CCTCATCACGATCCGTCTCAC 60.269 57.143 0.00 0.00 38.32 3.51
249 250 1.025041 CCTCATCACGATCCGTCTCA 58.975 55.000 0.00 0.00 38.32 3.27
250 251 1.025812 ACCTCATCACGATCCGTCTC 58.974 55.000 0.00 0.00 38.32 3.36
251 252 1.135139 CAACCTCATCACGATCCGTCT 59.865 52.381 0.00 0.00 38.32 4.18
252 253 1.560923 CAACCTCATCACGATCCGTC 58.439 55.000 0.00 0.00 38.32 4.79
253 254 0.175760 CCAACCTCATCACGATCCGT 59.824 55.000 0.00 0.00 42.36 4.69
254 255 1.154205 GCCAACCTCATCACGATCCG 61.154 60.000 0.00 0.00 0.00 4.18
255 256 1.154205 CGCCAACCTCATCACGATCC 61.154 60.000 0.00 0.00 0.00 3.36
256 257 0.179111 TCGCCAACCTCATCACGATC 60.179 55.000 0.00 0.00 0.00 3.69
257 258 0.179100 CTCGCCAACCTCATCACGAT 60.179 55.000 0.00 0.00 0.00 3.73
258 259 1.215382 CTCGCCAACCTCATCACGA 59.785 57.895 0.00 0.00 0.00 4.35
259 260 1.079819 ACTCGCCAACCTCATCACG 60.080 57.895 0.00 0.00 0.00 4.35
260 261 0.037326 TCACTCGCCAACCTCATCAC 60.037 55.000 0.00 0.00 0.00 3.06
261 262 0.037326 GTCACTCGCCAACCTCATCA 60.037 55.000 0.00 0.00 0.00 3.07
262 263 1.078759 CGTCACTCGCCAACCTCATC 61.079 60.000 0.00 0.00 0.00 2.92
263 264 1.079819 CGTCACTCGCCAACCTCAT 60.080 57.895 0.00 0.00 0.00 2.90
264 265 2.338620 CGTCACTCGCCAACCTCA 59.661 61.111 0.00 0.00 0.00 3.86
265 266 2.022129 CACGTCACTCGCCAACCTC 61.022 63.158 0.00 0.00 44.19 3.85
266 267 2.029073 CACGTCACTCGCCAACCT 59.971 61.111 0.00 0.00 44.19 3.50
267 268 2.028484 TCACGTCACTCGCCAACC 59.972 61.111 0.00 0.00 44.19 3.77
268 269 1.548973 CTGTCACGTCACTCGCCAAC 61.549 60.000 0.00 0.00 44.19 3.77
269 270 1.299850 CTGTCACGTCACTCGCCAA 60.300 57.895 0.00 0.00 44.19 4.52
270 271 2.130073 CTCTGTCACGTCACTCGCCA 62.130 60.000 0.00 0.00 44.19 5.69
271 272 1.442857 CTCTGTCACGTCACTCGCC 60.443 63.158 0.00 0.00 44.19 5.54
272 273 0.169230 ATCTCTGTCACGTCACTCGC 59.831 55.000 0.00 0.00 44.19 5.03
273 274 1.527995 CGATCTCTGTCACGTCACTCG 60.528 57.143 0.00 0.00 46.00 4.18
274 275 1.202087 CCGATCTCTGTCACGTCACTC 60.202 57.143 0.00 0.00 0.00 3.51
275 276 0.805614 CCGATCTCTGTCACGTCACT 59.194 55.000 0.00 0.00 0.00 3.41
276 277 0.803117 TCCGATCTCTGTCACGTCAC 59.197 55.000 0.00 0.00 0.00 3.67
277 278 1.087501 CTCCGATCTCTGTCACGTCA 58.912 55.000 0.00 0.00 0.00 4.35
278 279 0.248296 GCTCCGATCTCTGTCACGTC 60.248 60.000 0.00 0.00 0.00 4.34
279 280 0.678366 AGCTCCGATCTCTGTCACGT 60.678 55.000 0.00 0.00 0.00 4.49
280 281 0.248417 CAGCTCCGATCTCTGTCACG 60.248 60.000 0.00 0.00 0.00 4.35
281 282 1.098869 TCAGCTCCGATCTCTGTCAC 58.901 55.000 0.00 0.00 0.00 3.67
282 283 1.747924 CTTCAGCTCCGATCTCTGTCA 59.252 52.381 0.00 0.00 0.00 3.58
283 284 2.020720 TCTTCAGCTCCGATCTCTGTC 58.979 52.381 0.00 0.00 0.00 3.51
284 285 2.023673 CTCTTCAGCTCCGATCTCTGT 58.976 52.381 0.00 0.00 0.00 3.41
285 286 1.269206 GCTCTTCAGCTCCGATCTCTG 60.269 57.143 0.00 0.00 43.09 3.35
286 287 1.032014 GCTCTTCAGCTCCGATCTCT 58.968 55.000 0.00 0.00 43.09 3.10
287 288 3.568093 GCTCTTCAGCTCCGATCTC 57.432 57.895 0.00 0.00 43.09 2.75
297 298 2.186384 CCGGCTCCAGCTCTTCAG 59.814 66.667 0.00 0.00 41.70 3.02
298 299 4.087892 GCCGGCTCCAGCTCTTCA 62.088 66.667 22.15 0.00 41.70 3.02
299 300 4.087892 TGCCGGCTCCAGCTCTTC 62.088 66.667 29.70 0.00 41.70 2.87
300 301 4.093291 CTGCCGGCTCCAGCTCTT 62.093 66.667 29.70 0.00 41.70 2.85
323 324 3.850098 CTATCCCCATGGCCGGCAC 62.850 68.421 30.85 18.39 0.00 5.01
324 325 3.569210 CTATCCCCATGGCCGGCA 61.569 66.667 30.85 15.30 0.00 5.69
325 326 4.351054 CCTATCCCCATGGCCGGC 62.351 72.222 21.18 21.18 0.00 6.13
326 327 1.915078 GATCCTATCCCCATGGCCGG 61.915 65.000 6.09 2.99 0.00 6.13
327 328 0.911525 AGATCCTATCCCCATGGCCG 60.912 60.000 6.09 0.00 0.00 6.13
328 329 1.376649 AAGATCCTATCCCCATGGCC 58.623 55.000 6.09 0.00 0.00 5.36
329 330 3.532641 AAAAGATCCTATCCCCATGGC 57.467 47.619 6.09 0.00 0.00 4.40
330 331 3.575687 GCAAAAAGATCCTATCCCCATGG 59.424 47.826 4.14 4.14 0.00 3.66
331 332 4.477249 AGCAAAAAGATCCTATCCCCATG 58.523 43.478 0.00 0.00 0.00 3.66
332 333 4.418190 AGAGCAAAAAGATCCTATCCCCAT 59.582 41.667 0.00 0.00 31.44 4.00
333 334 3.788142 AGAGCAAAAAGATCCTATCCCCA 59.212 43.478 0.00 0.00 31.44 4.96
334 335 4.140536 CAGAGCAAAAAGATCCTATCCCC 58.859 47.826 0.00 0.00 31.44 4.81
335 336 4.786425 ACAGAGCAAAAAGATCCTATCCC 58.214 43.478 0.00 0.00 31.44 3.85
336 337 7.604545 GGTATACAGAGCAAAAAGATCCTATCC 59.395 40.741 5.01 0.00 31.44 2.59
337 338 8.150945 TGGTATACAGAGCAAAAAGATCCTATC 58.849 37.037 5.01 0.00 31.44 2.08
338 339 8.034313 TGGTATACAGAGCAAAAAGATCCTAT 57.966 34.615 5.01 0.00 31.44 2.57
339 340 7.432148 TGGTATACAGAGCAAAAAGATCCTA 57.568 36.000 5.01 0.00 31.44 2.94
340 341 6.313519 TGGTATACAGAGCAAAAAGATCCT 57.686 37.500 5.01 0.00 31.44 3.24
341 342 6.599638 ACTTGGTATACAGAGCAAAAAGATCC 59.400 38.462 5.01 0.00 36.45 3.36
342 343 7.334421 TGACTTGGTATACAGAGCAAAAAGATC 59.666 37.037 5.01 0.00 36.45 2.75
343 344 7.168219 TGACTTGGTATACAGAGCAAAAAGAT 58.832 34.615 5.01 0.00 36.45 2.40
344 345 6.530120 TGACTTGGTATACAGAGCAAAAAGA 58.470 36.000 5.01 0.00 36.45 2.52
345 346 6.621596 GCTGACTTGGTATACAGAGCAAAAAG 60.622 42.308 5.01 0.05 36.45 2.27
346 347 5.181245 GCTGACTTGGTATACAGAGCAAAAA 59.819 40.000 5.01 0.00 36.45 1.94
347 348 4.695455 GCTGACTTGGTATACAGAGCAAAA 59.305 41.667 5.01 0.00 36.45 2.44
348 349 4.020218 AGCTGACTTGGTATACAGAGCAAA 60.020 41.667 5.01 0.00 36.45 3.68
349 350 3.515502 AGCTGACTTGGTATACAGAGCAA 59.484 43.478 5.01 0.00 35.60 3.91
350 351 3.099905 AGCTGACTTGGTATACAGAGCA 58.900 45.455 5.01 4.13 32.90 4.26
351 352 3.810310 AGCTGACTTGGTATACAGAGC 57.190 47.619 5.01 1.17 32.90 4.09
352 353 6.294453 CCATCTAGCTGACTTGGTATACAGAG 60.294 46.154 5.01 4.34 32.90 3.35
353 354 5.536538 CCATCTAGCTGACTTGGTATACAGA 59.463 44.000 5.01 0.00 32.90 3.41
354 355 5.536538 TCCATCTAGCTGACTTGGTATACAG 59.463 44.000 5.01 0.00 0.00 2.74
355 356 5.454966 TCCATCTAGCTGACTTGGTATACA 58.545 41.667 5.01 0.00 0.00 2.29
356 357 6.406692 TTCCATCTAGCTGACTTGGTATAC 57.593 41.667 0.00 0.00 0.00 1.47
357 358 7.445121 CATTTCCATCTAGCTGACTTGGTATA 58.555 38.462 0.00 0.00 0.00 1.47
358 359 5.957771 TTTCCATCTAGCTGACTTGGTAT 57.042 39.130 0.00 0.00 0.00 2.73
359 360 5.674525 CATTTCCATCTAGCTGACTTGGTA 58.325 41.667 0.00 0.00 0.00 3.25
360 361 4.521146 CATTTCCATCTAGCTGACTTGGT 58.479 43.478 0.00 0.00 0.00 3.67
361 362 3.314635 GCATTTCCATCTAGCTGACTTGG 59.685 47.826 0.00 0.00 0.00 3.61
362 363 3.314635 GGCATTTCCATCTAGCTGACTTG 59.685 47.826 0.00 0.00 34.01 3.16
363 364 3.549794 GGCATTTCCATCTAGCTGACTT 58.450 45.455 0.00 0.00 34.01 3.01
364 365 2.484417 CGGCATTTCCATCTAGCTGACT 60.484 50.000 0.00 0.00 33.54 3.41
365 366 1.869767 CGGCATTTCCATCTAGCTGAC 59.130 52.381 0.00 0.00 33.54 3.51
366 367 1.486310 ACGGCATTTCCATCTAGCTGA 59.514 47.619 0.00 0.00 35.62 4.26
367 368 1.600957 CACGGCATTTCCATCTAGCTG 59.399 52.381 0.00 0.00 37.59 4.24
368 369 1.486310 TCACGGCATTTCCATCTAGCT 59.514 47.619 0.00 0.00 34.01 3.32
369 370 1.953559 TCACGGCATTTCCATCTAGC 58.046 50.000 0.00 0.00 34.01 3.42
370 371 2.810274 CCATCACGGCATTTCCATCTAG 59.190 50.000 0.00 0.00 34.01 2.43
371 372 2.849942 CCATCACGGCATTTCCATCTA 58.150 47.619 0.00 0.00 34.01 1.98
372 373 1.683943 CCATCACGGCATTTCCATCT 58.316 50.000 0.00 0.00 34.01 2.90
383 384 2.961526 ACTAGTGTAAGCCATCACGG 57.038 50.000 0.00 0.00 39.25 4.94
384 385 4.209288 GCAATACTAGTGTAAGCCATCACG 59.791 45.833 5.39 0.00 39.25 4.35
385 386 5.360591 AGCAATACTAGTGTAAGCCATCAC 58.639 41.667 5.39 0.00 35.64 3.06
386 387 5.128663 TGAGCAATACTAGTGTAAGCCATCA 59.871 40.000 5.39 5.44 35.64 3.07
387 388 5.601662 TGAGCAATACTAGTGTAAGCCATC 58.398 41.667 5.39 3.04 35.64 3.51
388 389 5.129485 ACTGAGCAATACTAGTGTAAGCCAT 59.871 40.000 5.39 0.00 35.64 4.40
389 390 4.466370 ACTGAGCAATACTAGTGTAAGCCA 59.534 41.667 5.39 6.77 35.64 4.75
390 391 5.012328 ACTGAGCAATACTAGTGTAAGCC 57.988 43.478 5.39 2.81 35.64 4.35
391 392 6.969828 AAACTGAGCAATACTAGTGTAAGC 57.030 37.500 5.39 7.23 35.42 3.09
405 406 9.750125 CTGTACTTGATGTATATAAACTGAGCA 57.250 33.333 0.00 0.00 33.23 4.26
406 407 9.197694 CCTGTACTTGATGTATATAAACTGAGC 57.802 37.037 0.00 0.00 33.23 4.26
416 417 9.027202 TGTAACTGAACCTGTACTTGATGTATA 57.973 33.333 0.00 0.00 33.23 1.47
417 418 7.903145 TGTAACTGAACCTGTACTTGATGTAT 58.097 34.615 0.00 0.00 33.23 2.29
418 419 7.292713 TGTAACTGAACCTGTACTTGATGTA 57.707 36.000 0.00 0.00 0.00 2.29
419 420 6.169557 TGTAACTGAACCTGTACTTGATGT 57.830 37.500 0.00 0.00 0.00 3.06
420 421 5.120830 GCTGTAACTGAACCTGTACTTGATG 59.879 44.000 0.00 0.00 0.00 3.07
421 422 5.012148 AGCTGTAACTGAACCTGTACTTGAT 59.988 40.000 0.00 0.00 0.00 2.57
422 423 4.344102 AGCTGTAACTGAACCTGTACTTGA 59.656 41.667 0.00 0.00 0.00 3.02
423 424 4.632153 AGCTGTAACTGAACCTGTACTTG 58.368 43.478 0.00 0.00 0.00 3.16
424 425 4.344102 TGAGCTGTAACTGAACCTGTACTT 59.656 41.667 0.00 0.00 0.00 2.24
425 426 3.895656 TGAGCTGTAACTGAACCTGTACT 59.104 43.478 0.00 0.00 0.00 2.73
426 427 4.252971 TGAGCTGTAACTGAACCTGTAC 57.747 45.455 0.00 0.00 0.00 2.90
427 428 4.799586 GCTTGAGCTGTAACTGAACCTGTA 60.800 45.833 0.00 0.00 38.21 2.74
428 429 3.733337 CTTGAGCTGTAACTGAACCTGT 58.267 45.455 0.00 0.00 0.00 4.00
429 430 2.481952 GCTTGAGCTGTAACTGAACCTG 59.518 50.000 0.00 0.00 38.21 4.00
430 431 2.772287 GCTTGAGCTGTAACTGAACCT 58.228 47.619 0.00 0.00 38.21 3.50
431 432 1.461127 CGCTTGAGCTGTAACTGAACC 59.539 52.381 0.00 0.00 39.32 3.62
432 433 2.404215 TCGCTTGAGCTGTAACTGAAC 58.596 47.619 0.00 0.00 39.32 3.18
433 434 2.812358 TCGCTTGAGCTGTAACTGAA 57.188 45.000 0.00 0.00 39.32 3.02
434 435 2.610433 CATCGCTTGAGCTGTAACTGA 58.390 47.619 0.00 0.00 39.32 3.41
435 436 1.662629 CCATCGCTTGAGCTGTAACTG 59.337 52.381 0.00 0.00 39.32 3.16
436 437 1.276421 ACCATCGCTTGAGCTGTAACT 59.724 47.619 0.00 0.00 39.32 2.24
437 438 1.394917 CACCATCGCTTGAGCTGTAAC 59.605 52.381 0.00 0.00 39.32 2.50
438 439 1.675714 CCACCATCGCTTGAGCTGTAA 60.676 52.381 0.00 0.00 39.32 2.41
439 440 0.108186 CCACCATCGCTTGAGCTGTA 60.108 55.000 0.00 0.00 39.32 2.74
440 441 1.376424 CCACCATCGCTTGAGCTGT 60.376 57.895 0.00 0.00 39.32 4.40
441 442 0.463295 ATCCACCATCGCTTGAGCTG 60.463 55.000 0.00 0.00 39.32 4.24
442 443 1.123077 TATCCACCATCGCTTGAGCT 58.877 50.000 1.07 0.00 39.32 4.09
443 444 1.953559 TTATCCACCATCGCTTGAGC 58.046 50.000 0.00 0.00 37.78 4.26
444 445 5.991606 TCTTAATTATCCACCATCGCTTGAG 59.008 40.000 0.00 0.00 0.00 3.02
445 446 5.924356 TCTTAATTATCCACCATCGCTTGA 58.076 37.500 0.00 0.00 0.00 3.02
446 447 5.991606 TCTCTTAATTATCCACCATCGCTTG 59.008 40.000 0.00 0.00 0.00 4.01
447 448 6.174720 TCTCTTAATTATCCACCATCGCTT 57.825 37.500 0.00 0.00 0.00 4.68
448 449 5.808366 TCTCTTAATTATCCACCATCGCT 57.192 39.130 0.00 0.00 0.00 4.93
449 450 6.073003 CCTTTCTCTTAATTATCCACCATCGC 60.073 42.308 0.00 0.00 0.00 4.58
450 451 6.992715 ACCTTTCTCTTAATTATCCACCATCG 59.007 38.462 0.00 0.00 0.00 3.84
451 452 8.214364 AGACCTTTCTCTTAATTATCCACCATC 58.786 37.037 0.00 0.00 0.00 3.51
452 453 8.107196 AGACCTTTCTCTTAATTATCCACCAT 57.893 34.615 0.00 0.00 0.00 3.55
453 454 7.510675 AGACCTTTCTCTTAATTATCCACCA 57.489 36.000 0.00 0.00 0.00 4.17
474 475 5.221165 GCTAGAATGTGGAAGGTCTAGAGAC 60.221 48.000 10.06 0.75 41.34 3.36
475 476 4.890581 GCTAGAATGTGGAAGGTCTAGAGA 59.109 45.833 10.06 0.00 41.34 3.10
476 477 4.646945 TGCTAGAATGTGGAAGGTCTAGAG 59.353 45.833 10.06 0.00 41.34 2.43
477 478 4.402793 GTGCTAGAATGTGGAAGGTCTAGA 59.597 45.833 10.06 0.00 41.34 2.43
478 479 4.404073 AGTGCTAGAATGTGGAAGGTCTAG 59.596 45.833 0.00 0.00 41.61 2.43
479 480 4.353777 AGTGCTAGAATGTGGAAGGTCTA 58.646 43.478 0.00 0.00 0.00 2.59
480 481 3.177228 AGTGCTAGAATGTGGAAGGTCT 58.823 45.455 0.00 0.00 0.00 3.85
481 482 3.618690 AGTGCTAGAATGTGGAAGGTC 57.381 47.619 0.00 0.00 0.00 3.85
482 483 4.624125 GCTTAGTGCTAGAATGTGGAAGGT 60.624 45.833 0.00 0.00 38.95 3.50
483 484 3.873952 GCTTAGTGCTAGAATGTGGAAGG 59.126 47.826 0.00 0.00 38.95 3.46
501 502 9.770097 GCTGCCTATTATGATCATTATAGCTTA 57.230 33.333 26.03 16.81 32.17 3.09
502 503 8.270030 TGCTGCCTATTATGATCATTATAGCTT 58.730 33.333 26.03 3.78 32.17 3.74
503 504 7.714377 GTGCTGCCTATTATGATCATTATAGCT 59.286 37.037 26.03 4.09 32.17 3.32
504 505 7.714377 AGTGCTGCCTATTATGATCATTATAGC 59.286 37.037 26.03 20.74 32.17 2.97
508 509 9.964354 AATTAGTGCTGCCTATTATGATCATTA 57.036 29.630 14.65 4.97 0.00 1.90
509 510 8.737175 CAATTAGTGCTGCCTATTATGATCATT 58.263 33.333 14.65 0.00 0.00 2.57
510 511 8.105197 TCAATTAGTGCTGCCTATTATGATCAT 58.895 33.333 13.81 13.81 0.00 2.45
511 512 7.452562 TCAATTAGTGCTGCCTATTATGATCA 58.547 34.615 0.00 0.00 0.00 2.92
512 513 7.912056 TCAATTAGTGCTGCCTATTATGATC 57.088 36.000 0.00 0.00 0.00 2.92
513 514 8.874744 ATTCAATTAGTGCTGCCTATTATGAT 57.125 30.769 0.00 0.00 0.00 2.45
514 515 7.391554 GGATTCAATTAGTGCTGCCTATTATGA 59.608 37.037 0.00 1.70 0.00 2.15
515 516 7.175467 TGGATTCAATTAGTGCTGCCTATTATG 59.825 37.037 0.00 0.00 0.00 1.90
516 517 7.233632 TGGATTCAATTAGTGCTGCCTATTAT 58.766 34.615 0.00 0.00 0.00 1.28
517 518 6.600388 TGGATTCAATTAGTGCTGCCTATTA 58.400 36.000 0.00 0.00 0.00 0.98
518 519 5.448654 TGGATTCAATTAGTGCTGCCTATT 58.551 37.500 0.00 0.00 0.00 1.73
519 520 5.052693 TGGATTCAATTAGTGCTGCCTAT 57.947 39.130 0.00 0.00 0.00 2.57
520 521 4.502105 TGGATTCAATTAGTGCTGCCTA 57.498 40.909 0.00 0.00 0.00 3.93
521 522 3.370840 TGGATTCAATTAGTGCTGCCT 57.629 42.857 0.00 0.00 0.00 4.75
522 523 4.427312 CTTTGGATTCAATTAGTGCTGCC 58.573 43.478 0.00 0.00 32.28 4.85
523 524 4.158394 TCCTTTGGATTCAATTAGTGCTGC 59.842 41.667 0.00 0.00 32.28 5.25
524 525 5.902613 TCCTTTGGATTCAATTAGTGCTG 57.097 39.130 0.00 0.00 32.28 4.41
525 526 5.163478 GCATCCTTTGGATTCAATTAGTGCT 60.163 40.000 0.00 0.00 39.79 4.40
526 527 5.045872 GCATCCTTTGGATTCAATTAGTGC 58.954 41.667 0.00 0.00 39.79 4.40
527 528 5.163622 ACGCATCCTTTGGATTCAATTAGTG 60.164 40.000 0.00 0.00 39.79 2.74
528 529 4.949856 ACGCATCCTTTGGATTCAATTAGT 59.050 37.500 0.00 0.00 39.79 2.24
529 530 5.505173 ACGCATCCTTTGGATTCAATTAG 57.495 39.130 0.00 0.00 39.79 1.73
530 531 5.649557 CAACGCATCCTTTGGATTCAATTA 58.350 37.500 0.00 0.00 39.79 1.40
531 532 4.497300 CAACGCATCCTTTGGATTCAATT 58.503 39.130 0.00 0.00 39.79 2.32
532 533 3.676873 GCAACGCATCCTTTGGATTCAAT 60.677 43.478 0.00 0.00 39.79 2.57
533 534 2.352617 GCAACGCATCCTTTGGATTCAA 60.353 45.455 0.00 0.00 39.79 2.69
534 535 1.202114 GCAACGCATCCTTTGGATTCA 59.798 47.619 0.00 0.00 39.79 2.57
535 536 1.474077 AGCAACGCATCCTTTGGATTC 59.526 47.619 0.00 0.00 39.79 2.52
536 537 1.549203 AGCAACGCATCCTTTGGATT 58.451 45.000 0.00 0.00 39.79 3.01
537 538 1.549203 AAGCAACGCATCCTTTGGAT 58.451 45.000 0.00 0.00 44.21 3.41
538 539 2.192664 TAAGCAACGCATCCTTTGGA 57.807 45.000 0.00 0.00 35.55 3.53
539 540 2.030363 TGTTAAGCAACGCATCCTTTGG 60.030 45.455 0.00 0.00 37.48 3.28
540 541 3.281341 TGTTAAGCAACGCATCCTTTG 57.719 42.857 0.00 0.00 37.48 2.77
541 542 3.900941 CTTGTTAAGCAACGCATCCTTT 58.099 40.909 0.00 0.00 37.48 3.11
542 543 3.559238 CTTGTTAAGCAACGCATCCTT 57.441 42.857 0.00 0.00 37.48 3.36
554 555 2.123988 TTGTGGCGGCGCTTGTTAAG 62.124 55.000 32.30 0.00 0.00 1.85
555 556 2.187493 TTGTGGCGGCGCTTGTTAA 61.187 52.632 32.30 16.31 0.00 2.01
556 557 2.592001 TTGTGGCGGCGCTTGTTA 60.592 55.556 32.30 11.10 0.00 2.41
557 558 4.264638 GTTGTGGCGGCGCTTGTT 62.265 61.111 32.30 0.00 0.00 2.83
584 585 2.181021 GTCGTCGGGTAGTGCCAG 59.819 66.667 0.00 0.00 39.65 4.85
622 623 0.623723 GGGCCACCTTGTTGATCCTA 59.376 55.000 4.39 0.00 0.00 2.94
659 660 2.430075 CACGACGTCGGTGATGCA 60.430 61.111 37.89 0.00 44.95 3.96
713 714 1.375908 GAGGAAGGATGTGCACGCA 60.376 57.895 13.13 0.00 0.00 5.24
733 734 2.732016 CCCTCAACCGTGTCGTCA 59.268 61.111 0.00 0.00 0.00 4.35
913 914 0.171231 CGCAGAAGATCTCCGTGTCA 59.829 55.000 0.00 0.00 0.00 3.58
949 950 2.272797 CTCTCCTCGTCCTCCCGT 59.727 66.667 0.00 0.00 0.00 5.28
1014 1016 1.110442 CGAGCTCCCTGATCAGAGTT 58.890 55.000 24.62 12.37 32.47 3.01
1056 1058 4.081420 ACGCTAATGGTCTTGAAGATCTGT 60.081 41.667 7.03 0.00 0.00 3.41
1075 1077 2.348998 CTTGGGAGGCTTGACGCT 59.651 61.111 0.00 0.00 39.13 5.07
1161 1163 1.296002 TAAGGAAGAAGAAGGCCCCC 58.704 55.000 0.00 0.00 0.00 5.40
1245 1247 1.595993 CGTTCTTCTCGGCCTCCTCA 61.596 60.000 0.00 0.00 0.00 3.86
1311 1313 3.562393 CCTCACTGTGAGTCTTCTCCCTA 60.562 52.174 29.99 0.00 42.80 3.53
1327 1329 3.444805 GCGCCTCTCGACCTCACT 61.445 66.667 0.00 0.00 41.67 3.41
1359 1361 0.900182 TGCCGTCCATCAGAGTCAGT 60.900 55.000 0.00 0.00 0.00 3.41
1385 1387 2.885164 CGATGACATGCGCGTGGA 60.885 61.111 31.55 18.90 0.00 4.02
1388 1390 1.519234 ATGACGATGACATGCGCGT 60.519 52.632 8.43 0.00 39.99 6.01
1619 1621 4.436998 GTAGCGCCGCCTCAGTGT 62.437 66.667 4.98 0.00 0.00 3.55
1635 1637 1.649321 TCTTCTCCCTGATGCACTGT 58.351 50.000 0.00 0.00 0.00 3.55
1822 1824 2.657237 CTCCCTCTTGACGCCGTT 59.343 61.111 0.00 0.00 0.00 4.44
1866 1868 2.813754 CTCGAATTTCTTTGGGTGCTCA 59.186 45.455 0.00 0.00 0.00 4.26
1903 1905 0.763223 AAGAGGACACCCTTGGACGT 60.763 55.000 0.00 0.00 44.53 4.34
1914 1916 1.077805 TGGCCCGTAGAAGAGGACA 59.922 57.895 0.00 0.00 35.90 4.02
2055 2057 0.458543 GCGCCTTGTCGAAGATCTCA 60.459 55.000 0.00 0.00 40.67 3.27
2084 2086 4.908687 AGAACAGCACGCACGGCA 62.909 61.111 6.35 0.00 0.00 5.69
2127 2129 3.249189 ACTCTGCCGCCCCTTTGA 61.249 61.111 0.00 0.00 0.00 2.69
2193 2195 2.554142 GCATTCATGTCGTCCATCTCA 58.446 47.619 0.00 0.00 0.00 3.27
2307 2309 1.756690 GCCTCGTCTGGTAAGGGGATA 60.757 57.143 0.00 0.00 0.00 2.59
2352 2354 2.614001 GGGAGACTTCCTGAGGCAT 58.386 57.895 0.00 0.00 43.49 4.40
2463 2465 0.982852 TGTCCTCCCTGATGGCGAAT 60.983 55.000 0.00 0.00 0.00 3.34
2465 2467 0.982852 AATGTCCTCCCTGATGGCGA 60.983 55.000 0.00 0.00 0.00 5.54
2615 2617 0.960861 TCTGATGTCGGTGTCGCTCT 60.961 55.000 0.00 0.00 36.13 4.09
2783 2785 9.396022 CCTACTTCATGTTCTAACAATGGTTAT 57.604 33.333 0.00 0.00 43.03 1.89
2965 3003 4.679331 AGGCTAGTTTTCAGAGTCTAGGT 58.321 43.478 0.00 0.00 32.94 3.08
3012 3050 5.522824 AGAAGCTTATTATTTCGGTTCCGTC 59.477 40.000 11.04 0.00 35.21 4.79
3054 3092 2.565834 ACGCTTAGGCTAGTTTCCAGAA 59.434 45.455 0.00 0.00 36.09 3.02
3059 3097 5.166398 TCAGTTAACGCTTAGGCTAGTTTC 58.834 41.667 0.00 0.00 36.09 2.78
3073 3111 7.331193 ACAAGGAGCTTATTACTTCAGTTAACG 59.669 37.037 0.00 0.00 0.00 3.18
3074 3112 8.549338 ACAAGGAGCTTATTACTTCAGTTAAC 57.451 34.615 0.00 0.00 0.00 2.01
3075 3113 8.999431 CAACAAGGAGCTTATTACTTCAGTTAA 58.001 33.333 0.00 0.00 0.00 2.01
3076 3114 8.154856 ACAACAAGGAGCTTATTACTTCAGTTA 58.845 33.333 0.00 0.00 0.00 2.24
3077 3115 6.998673 ACAACAAGGAGCTTATTACTTCAGTT 59.001 34.615 0.00 0.00 0.00 3.16
3078 3116 6.534634 ACAACAAGGAGCTTATTACTTCAGT 58.465 36.000 0.00 0.00 0.00 3.41
3079 3117 7.819900 ACTACAACAAGGAGCTTATTACTTCAG 59.180 37.037 0.00 0.00 0.00 3.02
3080 3118 7.676947 ACTACAACAAGGAGCTTATTACTTCA 58.323 34.615 0.00 0.00 0.00 3.02
3081 3119 8.549338 AACTACAACAAGGAGCTTATTACTTC 57.451 34.615 0.00 0.00 0.00 3.01
3082 3120 8.784043 CAAACTACAACAAGGAGCTTATTACTT 58.216 33.333 0.00 0.00 0.00 2.24
3083 3121 7.937394 ACAAACTACAACAAGGAGCTTATTACT 59.063 33.333 0.00 0.00 0.00 2.24
3084 3122 8.095937 ACAAACTACAACAAGGAGCTTATTAC 57.904 34.615 0.00 0.00 0.00 1.89
3085 3123 9.211485 GTACAAACTACAACAAGGAGCTTATTA 57.789 33.333 0.00 0.00 0.00 0.98
3086 3124 7.937394 AGTACAAACTACAACAAGGAGCTTATT 59.063 33.333 0.00 0.00 32.84 1.40
3087 3125 7.450903 AGTACAAACTACAACAAGGAGCTTAT 58.549 34.615 0.00 0.00 32.84 1.73
3088 3126 6.823497 AGTACAAACTACAACAAGGAGCTTA 58.177 36.000 0.00 0.00 32.84 3.09
3089 3127 5.681639 AGTACAAACTACAACAAGGAGCTT 58.318 37.500 0.00 0.00 32.84 3.74
3090 3128 5.291905 AGTACAAACTACAACAAGGAGCT 57.708 39.130 0.00 0.00 32.84 4.09
3102 3140 5.048504 CAGAGAACGGTGGTAGTACAAACTA 60.049 44.000 2.06 0.00 37.15 2.24
3103 3141 3.893813 AGAGAACGGTGGTAGTACAAACT 59.106 43.478 2.06 0.00 39.91 2.66
3104 3142 3.985925 CAGAGAACGGTGGTAGTACAAAC 59.014 47.826 2.06 0.00 0.00 2.93
3105 3143 3.890756 TCAGAGAACGGTGGTAGTACAAA 59.109 43.478 2.06 0.00 0.00 2.83
3106 3144 3.254166 GTCAGAGAACGGTGGTAGTACAA 59.746 47.826 2.06 0.00 0.00 2.41
3107 3145 2.816087 GTCAGAGAACGGTGGTAGTACA 59.184 50.000 2.06 0.00 0.00 2.90
3108 3146 2.816087 TGTCAGAGAACGGTGGTAGTAC 59.184 50.000 0.00 0.00 0.00 2.73
3109 3147 3.144657 TGTCAGAGAACGGTGGTAGTA 57.855 47.619 0.00 0.00 0.00 1.82
3110 3148 1.991121 TGTCAGAGAACGGTGGTAGT 58.009 50.000 0.00 0.00 0.00 2.73
3152 3190 4.464069 TTCCTTTTTGTTTCCAGTGGTG 57.536 40.909 9.54 0.00 0.00 4.17
3190 3231 7.491682 TGGAATTCAAGAAGAAAAACAAGGAG 58.508 34.615 7.93 0.00 40.22 3.69
3195 3236 7.339212 TCTGACTGGAATTCAAGAAGAAAAACA 59.661 33.333 17.08 3.23 40.22 2.83
3201 3242 7.720957 TGATTTTCTGACTGGAATTCAAGAAGA 59.279 33.333 17.08 14.62 0.00 2.87
3205 3246 8.301720 TCATTGATTTTCTGACTGGAATTCAAG 58.698 33.333 8.40 8.40 34.43 3.02
3276 3317 4.444876 GGTTAGCCAAAGCAGGATCTATGA 60.445 45.833 3.08 0.00 43.56 2.15
3290 3331 4.390129 TTGGTAATTGAGGGTTAGCCAA 57.610 40.909 2.44 0.00 36.17 4.52
3293 3334 6.459710 GCAACTATTGGTAATTGAGGGTTAGC 60.460 42.308 0.00 0.00 0.00 3.09
3295 3336 6.727394 AGCAACTATTGGTAATTGAGGGTTA 58.273 36.000 0.00 0.00 40.04 2.85
3302 3343 3.945285 ACCGGAGCAACTATTGGTAATTG 59.055 43.478 9.46 0.00 42.23 2.32
3310 3351 5.479716 CGAAATTAACCGGAGCAACTATT 57.520 39.130 9.46 0.00 0.00 1.73
3332 3387 4.393371 GGTGCTCTCTTACAAGTTCAATCC 59.607 45.833 0.00 0.00 0.00 3.01
3333 3388 5.121454 CAGGTGCTCTCTTACAAGTTCAATC 59.879 44.000 0.00 0.00 0.00 2.67
3431 3487 3.144125 TGGCCTCTGGATAAGGGTAGTAT 59.856 47.826 3.32 0.00 34.26 2.12
3591 3655 3.441222 GTGAATGTGATCATGAGCACCAA 59.559 43.478 34.30 21.30 46.28 3.67
3594 3658 3.937079 TCTGTGAATGTGATCATGAGCAC 59.063 43.478 32.01 32.01 46.94 4.40
3618 3682 3.928343 GTTGCAAACCGTAAGTGCA 57.072 47.368 0.00 0.00 43.85 4.57
3674 3746 7.282675 TCGAAACCTAGAGGAACTTATGAGTAG 59.717 40.741 1.60 0.00 41.55 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.