Multiple sequence alignment - TraesCS3A01G144400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G144400 chr3A 100.000 3359 0 0 1 3359 126124114 126120756 0.000000e+00 6204
1 TraesCS3A01G144400 chr3A 100.000 1445 0 0 3776 5220 126120339 126118895 0.000000e+00 2669
2 TraesCS3A01G144400 chr3A 80.090 1336 125 53 526 1818 126164290 126163053 0.000000e+00 863
3 TraesCS3A01G144400 chr3A 86.252 691 64 15 3863 4532 126157971 126157291 0.000000e+00 721
4 TraesCS3A01G144400 chr3A 85.938 384 46 6 3776 4153 120179129 120178748 2.260000e-108 403
5 TraesCS3A01G144400 chr3A 85.241 332 31 11 1817 2138 126162986 126162663 5.040000e-85 326
6 TraesCS3A01G144400 chr3A 78.272 405 41 23 2964 3348 126158472 126158095 3.170000e-52 217
7 TraesCS3A01G144400 chr3A 96.774 124 3 1 1 124 520762268 520762390 6.850000e-49 206
8 TraesCS3A01G144400 chr3A 95.935 123 4 1 1 123 520749426 520749547 1.150000e-46 198
9 TraesCS3A01G144400 chr3B 86.653 2832 204 66 621 3359 171799849 171797099 0.000000e+00 2976
10 TraesCS3A01G144400 chr3B 82.824 1572 150 54 611 2138 171814485 171812990 0.000000e+00 1297
11 TraesCS3A01G144400 chr3B 91.547 769 50 7 3776 4531 171797072 171796306 0.000000e+00 1046
12 TraesCS3A01G144400 chr3B 86.629 703 66 17 3856 4536 171808811 171808115 0.000000e+00 752
13 TraesCS3A01G144400 chr3B 79.589 681 68 31 2712 3348 171809575 171808922 6.250000e-114 422
14 TraesCS3A01G144400 chr3B 84.574 376 38 11 4531 4904 171726761 171726404 6.430000e-94 355
15 TraesCS3A01G144400 chr3B 95.455 66 3 0 4904 4969 171726379 171726314 7.150000e-19 106
16 TraesCS3A01G144400 chr3B 89.873 79 4 2 526 604 171819515 171819441 1.200000e-16 99
17 TraesCS3A01G144400 chr3D 90.915 1552 72 25 506 2043 119411650 119410154 0.000000e+00 2021
18 TraesCS3A01G144400 chr3D 92.805 1362 47 11 2030 3359 119410136 119408794 0.000000e+00 1925
19 TraesCS3A01G144400 chr3D 89.724 1343 91 23 3776 5077 119408767 119407431 0.000000e+00 1672
20 TraesCS3A01G144400 chr3D 82.543 1667 145 64 526 2138 119424852 119423278 0.000000e+00 1332
21 TraesCS3A01G144400 chr3D 87.572 692 60 10 3863 4536 119418808 119418125 0.000000e+00 778
22 TraesCS3A01G144400 chr3D 84.810 316 35 6 203 518 119411973 119411671 6.570000e-79 305
23 TraesCS3A01G144400 chr2A 97.561 123 2 1 1 123 518972752 518972631 5.300000e-50 209
24 TraesCS3A01G144400 chr2A 96.748 123 3 1 1 123 519016393 519016272 2.460000e-48 204
25 TraesCS3A01G144400 chr1A 97.541 122 1 1 1 122 171734960 171735079 1.910000e-49 207
26 TraesCS3A01G144400 chr7A 97.521 121 2 1 1 121 547022597 547022716 6.850000e-49 206
27 TraesCS3A01G144400 chr7A 96.694 121 3 1 3 123 501668270 501668389 3.190000e-47 200
28 TraesCS3A01G144400 chr7A 95.238 126 5 1 1 126 645309859 645309983 1.150000e-46 198
29 TraesCS3A01G144400 chr4A 95.122 123 5 1 1 123 180747426 180747305 5.330000e-45 193
30 TraesCS3A01G144400 chr6D 83.088 136 17 6 4538 4670 73525640 73525772 9.180000e-23 119
31 TraesCS3A01G144400 chr7D 83.200 125 17 4 4541 4663 591543687 591543565 1.540000e-20 111
32 TraesCS3A01G144400 chr4D 82.022 89 14 2 4537 4624 361034704 361034617 2.020000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G144400 chr3A 126118895 126124114 5219 True 4436.500000 6204 100.0000 1 5220 2 chr3A.!!$R2 5219
1 TraesCS3A01G144400 chr3A 126162663 126164290 1627 True 594.500000 863 82.6655 526 2138 2 chr3A.!!$R4 1612
2 TraesCS3A01G144400 chr3A 126157291 126158472 1181 True 469.000000 721 82.2620 2964 4532 2 chr3A.!!$R3 1568
3 TraesCS3A01G144400 chr3B 171796306 171799849 3543 True 2011.000000 2976 89.1000 621 4531 2 chr3B.!!$R3 3910
4 TraesCS3A01G144400 chr3B 171808115 171814485 6370 True 823.666667 1297 83.0140 611 4536 3 chr3B.!!$R4 3925
5 TraesCS3A01G144400 chr3D 119407431 119411973 4542 True 1480.750000 2021 89.5635 203 5077 4 chr3D.!!$R3 4874
6 TraesCS3A01G144400 chr3D 119423278 119424852 1574 True 1332.000000 1332 82.5430 526 2138 1 chr3D.!!$R2 1612
7 TraesCS3A01G144400 chr3D 119418125 119418808 683 True 778.000000 778 87.5720 3863 4536 1 chr3D.!!$R1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.107703 CCCACGCCTTAGATGCTTGA 60.108 55.0 0.00 0.00 30.19 3.02 F
145 146 0.178990 GGGTTGAAGTTGGCCTCACT 60.179 55.0 3.32 2.82 0.00 3.41 F
149 150 0.183492 TGAAGTTGGCCTCACTTGCT 59.817 50.0 21.58 2.44 0.00 3.91 F
1220 1316 0.034670 GGCTCCATGTTCTCCAAGCT 60.035 55.0 0.00 0.00 0.00 3.74 F
1914 2096 0.031178 GGCTCTGTGTGCACCTTTTG 59.969 55.0 15.69 3.14 0.00 2.44 F
2582 3194 0.041238 TCGTCCTCCTCACCATCCTT 59.959 55.0 0.00 0.00 0.00 3.36 F
3210 6497 0.229753 GAACAGATTATGCGTCGCCG 59.770 55.0 15.88 0.00 37.07 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1225 0.313043 ACCGTGAACGACTTGACGAT 59.687 50.000 4.03 0.0 39.11 3.73 R
1130 1226 0.593008 CACCGTGAACGACTTGACGA 60.593 55.000 4.03 0.0 39.11 4.20 R
1292 1388 1.012486 GCCCTCGACGTCGTTTTGAT 61.012 55.000 34.40 0.0 40.80 2.57 R
3208 6495 1.621107 TAGACTTACGAAAAGCGCGG 58.379 50.000 8.83 0.0 46.04 6.46 R
3786 7119 1.602165 GGATACGGGTGTCATGTAGCG 60.602 57.143 0.00 0.0 0.00 4.26 R
4052 7401 1.875157 CGACATGATGATCCGTGGCAT 60.875 52.381 0.00 0.0 30.50 4.40 R
5078 8479 0.108138 GTGGTCTCAGTTCATCCCGG 60.108 60.000 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.176752 GTAGCCGGCTGGGGGAAG 62.177 72.222 38.98 0.00 35.78 3.46
39 40 2.902343 GCCCCACGCCTTAGATGC 60.902 66.667 0.00 0.00 0.00 3.91
40 41 2.911143 CCCCACGCCTTAGATGCT 59.089 61.111 0.00 0.00 0.00 3.79
41 42 1.224592 CCCCACGCCTTAGATGCTT 59.775 57.895 0.00 0.00 0.00 3.91
42 43 1.097547 CCCCACGCCTTAGATGCTTG 61.098 60.000 0.00 0.00 0.00 4.01
43 44 0.107703 CCCACGCCTTAGATGCTTGA 60.108 55.000 0.00 0.00 30.19 3.02
44 45 1.678728 CCCACGCCTTAGATGCTTGAA 60.679 52.381 0.00 0.00 30.19 2.69
45 46 1.667724 CCACGCCTTAGATGCTTGAAG 59.332 52.381 0.00 0.00 30.19 3.02
46 47 1.667724 CACGCCTTAGATGCTTGAAGG 59.332 52.381 0.00 5.80 42.32 3.46
50 51 2.208431 CCTTAGATGCTTGAAGGCTCG 58.792 52.381 0.00 0.00 33.73 5.03
51 52 2.159043 CCTTAGATGCTTGAAGGCTCGA 60.159 50.000 0.00 0.00 33.73 4.04
52 53 3.494048 CCTTAGATGCTTGAAGGCTCGAT 60.494 47.826 0.00 0.00 33.73 3.59
53 54 2.237393 AGATGCTTGAAGGCTCGATC 57.763 50.000 0.00 0.00 0.00 3.69
54 55 0.857935 GATGCTTGAAGGCTCGATCG 59.142 55.000 9.36 9.36 0.00 3.69
55 56 0.531532 ATGCTTGAAGGCTCGATCGG 60.532 55.000 16.41 7.26 0.00 4.18
56 57 1.153549 GCTTGAAGGCTCGATCGGT 60.154 57.895 16.41 0.00 0.00 4.69
57 58 1.148759 GCTTGAAGGCTCGATCGGTC 61.149 60.000 16.41 7.70 0.00 4.79
58 59 0.457851 CTTGAAGGCTCGATCGGTCT 59.542 55.000 16.41 10.06 0.00 3.85
59 60 1.676529 CTTGAAGGCTCGATCGGTCTA 59.323 52.381 16.41 0.00 0.00 2.59
60 61 1.982660 TGAAGGCTCGATCGGTCTAT 58.017 50.000 16.41 4.31 0.00 1.98
61 62 3.136009 TGAAGGCTCGATCGGTCTATA 57.864 47.619 16.41 3.19 0.00 1.31
62 63 3.483421 TGAAGGCTCGATCGGTCTATAA 58.517 45.455 16.41 0.06 0.00 0.98
63 64 4.079970 TGAAGGCTCGATCGGTCTATAAT 58.920 43.478 16.41 0.00 0.00 1.28
64 65 4.523173 TGAAGGCTCGATCGGTCTATAATT 59.477 41.667 16.41 0.00 0.00 1.40
65 66 5.010719 TGAAGGCTCGATCGGTCTATAATTT 59.989 40.000 16.41 0.00 0.00 1.82
66 67 5.470047 AGGCTCGATCGGTCTATAATTTT 57.530 39.130 16.41 0.00 0.00 1.82
67 68 5.230942 AGGCTCGATCGGTCTATAATTTTG 58.769 41.667 16.41 0.00 0.00 2.44
68 69 4.143094 GGCTCGATCGGTCTATAATTTTGC 60.143 45.833 16.41 0.00 0.00 3.68
69 70 4.686554 GCTCGATCGGTCTATAATTTTGCT 59.313 41.667 16.41 0.00 0.00 3.91
70 71 5.388890 GCTCGATCGGTCTATAATTTTGCTG 60.389 44.000 16.41 0.00 0.00 4.41
71 72 5.838529 TCGATCGGTCTATAATTTTGCTGA 58.161 37.500 16.41 0.00 0.00 4.26
72 73 6.277605 TCGATCGGTCTATAATTTTGCTGAA 58.722 36.000 16.41 0.00 0.00 3.02
73 74 6.420903 TCGATCGGTCTATAATTTTGCTGAAG 59.579 38.462 16.41 0.00 0.00 3.02
74 75 6.420903 CGATCGGTCTATAATTTTGCTGAAGA 59.579 38.462 7.38 0.00 0.00 2.87
75 76 7.358765 CGATCGGTCTATAATTTTGCTGAAGAG 60.359 40.741 7.38 0.00 0.00 2.85
76 77 5.523916 TCGGTCTATAATTTTGCTGAAGAGC 59.476 40.000 0.00 0.00 46.44 4.09
77 78 5.277538 CGGTCTATAATTTTGCTGAAGAGCC 60.278 44.000 0.00 0.00 45.57 4.70
78 79 5.590259 GGTCTATAATTTTGCTGAAGAGCCA 59.410 40.000 0.00 0.00 45.57 4.75
79 80 6.238593 GGTCTATAATTTTGCTGAAGAGCCAG 60.239 42.308 0.00 0.00 45.57 4.85
80 81 4.996788 ATAATTTTGCTGAAGAGCCAGG 57.003 40.909 0.00 0.00 45.57 4.45
81 82 1.553706 ATTTTGCTGAAGAGCCAGGG 58.446 50.000 0.00 0.00 45.57 4.45
82 83 0.540365 TTTTGCTGAAGAGCCAGGGG 60.540 55.000 0.00 0.00 45.57 4.79
83 84 2.430704 TTTGCTGAAGAGCCAGGGGG 62.431 60.000 0.00 0.00 45.57 5.40
104 105 3.912907 CCGGCTAGGCTACCCGTG 61.913 72.222 22.96 12.96 40.38 4.94
105 106 3.912907 CGGCTAGGCTACCCGTGG 61.913 72.222 18.12 0.00 37.36 4.94
106 107 2.762875 GGCTAGGCTACCCGTGGT 60.763 66.667 9.46 1.14 40.16 4.16
107 108 2.364780 GGCTAGGCTACCCGTGGTT 61.365 63.158 9.46 0.00 37.09 3.67
108 109 1.044790 GGCTAGGCTACCCGTGGTTA 61.045 60.000 9.46 0.00 37.09 2.85
109 110 1.046204 GCTAGGCTACCCGTGGTTAT 58.954 55.000 0.72 0.00 37.09 1.89
110 111 1.415289 GCTAGGCTACCCGTGGTTATT 59.585 52.381 0.72 0.00 37.09 1.40
111 112 2.158856 GCTAGGCTACCCGTGGTTATTT 60.159 50.000 0.72 0.00 37.09 1.40
112 113 3.070015 GCTAGGCTACCCGTGGTTATTTA 59.930 47.826 0.72 0.00 37.09 1.40
113 114 3.548745 AGGCTACCCGTGGTTATTTAC 57.451 47.619 0.72 0.00 37.09 2.01
114 115 3.109928 AGGCTACCCGTGGTTATTTACT 58.890 45.455 0.72 0.00 37.09 2.24
115 116 3.133542 AGGCTACCCGTGGTTATTTACTC 59.866 47.826 0.72 0.00 37.09 2.59
116 117 3.461061 GCTACCCGTGGTTATTTACTCC 58.539 50.000 0.72 0.00 37.09 3.85
117 118 2.678471 ACCCGTGGTTATTTACTCCG 57.322 50.000 0.00 0.00 27.29 4.63
118 119 2.178580 ACCCGTGGTTATTTACTCCGA 58.821 47.619 0.00 0.00 27.29 4.55
119 120 2.094026 ACCCGTGGTTATTTACTCCGAC 60.094 50.000 0.00 0.00 27.29 4.79
120 121 2.094078 CCCGTGGTTATTTACTCCGACA 60.094 50.000 0.00 0.00 0.00 4.35
121 122 3.184541 CCGTGGTTATTTACTCCGACAG 58.815 50.000 0.00 0.00 0.00 3.51
122 123 3.367703 CCGTGGTTATTTACTCCGACAGT 60.368 47.826 0.00 0.00 39.41 3.55
123 124 3.855950 CGTGGTTATTTACTCCGACAGTC 59.144 47.826 0.00 0.00 36.43 3.51
124 125 4.616604 CGTGGTTATTTACTCCGACAGTCA 60.617 45.833 0.41 0.00 36.43 3.41
125 126 5.416947 GTGGTTATTTACTCCGACAGTCAT 58.583 41.667 0.41 0.00 36.43 3.06
126 127 5.291128 GTGGTTATTTACTCCGACAGTCATG 59.709 44.000 0.41 0.00 36.43 3.07
127 128 4.809426 GGTTATTTACTCCGACAGTCATGG 59.191 45.833 0.41 0.00 36.43 3.66
128 129 3.543680 ATTTACTCCGACAGTCATGGG 57.456 47.619 0.41 0.00 36.43 4.00
129 130 1.933021 TTACTCCGACAGTCATGGGT 58.067 50.000 0.41 0.00 36.43 4.51
130 131 1.933021 TACTCCGACAGTCATGGGTT 58.067 50.000 0.41 0.00 36.43 4.11
131 132 0.321671 ACTCCGACAGTCATGGGTTG 59.678 55.000 0.41 0.00 0.00 3.77
132 133 0.608130 CTCCGACAGTCATGGGTTGA 59.392 55.000 0.41 0.00 0.00 3.18
133 134 1.001974 CTCCGACAGTCATGGGTTGAA 59.998 52.381 0.41 0.00 35.70 2.69
134 135 1.001974 TCCGACAGTCATGGGTTGAAG 59.998 52.381 0.41 0.00 35.70 3.02
135 136 1.270839 CCGACAGTCATGGGTTGAAGT 60.271 52.381 0.41 0.00 35.70 3.01
136 137 2.494059 CGACAGTCATGGGTTGAAGTT 58.506 47.619 0.41 0.00 35.70 2.66
137 138 2.224079 CGACAGTCATGGGTTGAAGTTG 59.776 50.000 0.41 0.00 35.70 3.16
138 139 2.554032 GACAGTCATGGGTTGAAGTTGG 59.446 50.000 0.00 0.00 35.70 3.77
139 140 1.270550 CAGTCATGGGTTGAAGTTGGC 59.729 52.381 0.00 0.00 35.70 4.52
140 141 0.603065 GTCATGGGTTGAAGTTGGCC 59.397 55.000 0.00 0.00 35.70 5.36
141 142 0.482446 TCATGGGTTGAAGTTGGCCT 59.518 50.000 3.32 0.00 0.00 5.19
142 143 0.890683 CATGGGTTGAAGTTGGCCTC 59.109 55.000 3.32 0.00 0.00 4.70
143 144 0.482446 ATGGGTTGAAGTTGGCCTCA 59.518 50.000 3.32 0.00 0.00 3.86
144 145 0.467290 TGGGTTGAAGTTGGCCTCAC 60.467 55.000 3.32 0.00 0.00 3.51
145 146 0.178990 GGGTTGAAGTTGGCCTCACT 60.179 55.000 3.32 2.82 0.00 3.41
146 147 1.692411 GGTTGAAGTTGGCCTCACTT 58.308 50.000 17.89 17.89 0.00 3.16
147 148 1.338020 GGTTGAAGTTGGCCTCACTTG 59.662 52.381 21.58 0.00 0.00 3.16
148 149 1.032014 TTGAAGTTGGCCTCACTTGC 58.968 50.000 21.58 14.44 0.00 4.01
149 150 0.183492 TGAAGTTGGCCTCACTTGCT 59.817 50.000 21.58 2.44 0.00 3.91
150 151 0.877743 GAAGTTGGCCTCACTTGCTC 59.122 55.000 21.58 7.59 0.00 4.26
151 152 0.183492 AAGTTGGCCTCACTTGCTCA 59.817 50.000 17.34 0.00 0.00 4.26
152 153 0.250640 AGTTGGCCTCACTTGCTCAG 60.251 55.000 3.32 0.00 0.00 3.35
153 154 0.536006 GTTGGCCTCACTTGCTCAGT 60.536 55.000 3.32 0.00 35.35 3.41
161 162 1.757306 ACTTGCTCAGTGGAGTGGG 59.243 57.895 0.00 0.00 43.37 4.61
162 163 1.002868 CTTGCTCAGTGGAGTGGGG 60.003 63.158 0.00 0.00 43.37 4.96
163 164 1.461268 TTGCTCAGTGGAGTGGGGA 60.461 57.895 0.00 0.00 43.37 4.81
164 165 1.059584 TTGCTCAGTGGAGTGGGGAA 61.060 55.000 0.00 0.00 43.37 3.97
165 166 1.298014 GCTCAGTGGAGTGGGGAAG 59.702 63.158 0.00 0.00 43.37 3.46
166 167 1.194781 GCTCAGTGGAGTGGGGAAGA 61.195 60.000 0.00 0.00 43.37 2.87
167 168 0.901124 CTCAGTGGAGTGGGGAAGAG 59.099 60.000 0.00 0.00 36.36 2.85
168 169 0.545309 TCAGTGGAGTGGGGAAGAGG 60.545 60.000 0.00 0.00 0.00 3.69
169 170 0.545309 CAGTGGAGTGGGGAAGAGGA 60.545 60.000 0.00 0.00 0.00 3.71
170 171 0.193574 AGTGGAGTGGGGAAGAGGAA 59.806 55.000 0.00 0.00 0.00 3.36
171 172 1.064825 GTGGAGTGGGGAAGAGGAAA 58.935 55.000 0.00 0.00 0.00 3.13
172 173 1.423921 GTGGAGTGGGGAAGAGGAAAA 59.576 52.381 0.00 0.00 0.00 2.29
173 174 1.423921 TGGAGTGGGGAAGAGGAAAAC 59.576 52.381 0.00 0.00 0.00 2.43
174 175 1.705745 GGAGTGGGGAAGAGGAAAACT 59.294 52.381 0.00 0.00 0.00 2.66
175 176 2.553247 GGAGTGGGGAAGAGGAAAACTG 60.553 54.545 0.00 0.00 0.00 3.16
176 177 2.372172 GAGTGGGGAAGAGGAAAACTGA 59.628 50.000 0.00 0.00 0.00 3.41
177 178 2.106684 AGTGGGGAAGAGGAAAACTGAC 59.893 50.000 0.00 0.00 0.00 3.51
178 179 2.106684 GTGGGGAAGAGGAAAACTGACT 59.893 50.000 0.00 0.00 0.00 3.41
179 180 2.106511 TGGGGAAGAGGAAAACTGACTG 59.893 50.000 0.00 0.00 0.00 3.51
180 181 2.553247 GGGGAAGAGGAAAACTGACTGG 60.553 54.545 0.00 0.00 0.00 4.00
181 182 2.553247 GGGAAGAGGAAAACTGACTGGG 60.553 54.545 0.00 0.00 0.00 4.45
182 183 2.553247 GGAAGAGGAAAACTGACTGGGG 60.553 54.545 0.00 0.00 0.00 4.96
183 184 2.118403 AGAGGAAAACTGACTGGGGA 57.882 50.000 0.00 0.00 0.00 4.81
184 185 2.637165 AGAGGAAAACTGACTGGGGAT 58.363 47.619 0.00 0.00 0.00 3.85
185 186 2.573915 AGAGGAAAACTGACTGGGGATC 59.426 50.000 0.00 0.00 0.00 3.36
186 187 1.279271 AGGAAAACTGACTGGGGATCG 59.721 52.381 0.00 0.00 0.00 3.69
187 188 1.679032 GGAAAACTGACTGGGGATCGG 60.679 57.143 0.00 0.00 0.00 4.18
188 189 0.328258 AAAACTGACTGGGGATCGGG 59.672 55.000 0.00 0.00 0.00 5.14
189 190 1.562672 AAACTGACTGGGGATCGGGG 61.563 60.000 0.00 0.00 0.00 5.73
190 191 2.365635 CTGACTGGGGATCGGGGT 60.366 66.667 0.00 0.00 0.00 4.95
191 192 2.365105 TGACTGGGGATCGGGGTC 60.365 66.667 0.00 0.00 0.00 4.46
192 193 2.365105 GACTGGGGATCGGGGTCA 60.365 66.667 0.00 0.00 0.00 4.02
193 194 1.993391 GACTGGGGATCGGGGTCAA 60.993 63.158 0.00 0.00 0.00 3.18
194 195 2.253403 GACTGGGGATCGGGGTCAAC 62.253 65.000 0.00 0.00 0.00 3.18
195 196 1.995626 CTGGGGATCGGGGTCAACT 60.996 63.158 0.00 0.00 0.00 3.16
196 197 0.689745 CTGGGGATCGGGGTCAACTA 60.690 60.000 0.00 0.00 0.00 2.24
197 198 0.689745 TGGGGATCGGGGTCAACTAG 60.690 60.000 0.00 0.00 0.00 2.57
198 199 1.408453 GGGGATCGGGGTCAACTAGG 61.408 65.000 0.00 0.00 0.00 3.02
199 200 1.408453 GGGATCGGGGTCAACTAGGG 61.408 65.000 0.00 0.00 0.00 3.53
200 201 0.690077 GGATCGGGGTCAACTAGGGT 60.690 60.000 0.00 0.00 0.00 4.34
201 202 1.412074 GGATCGGGGTCAACTAGGGTA 60.412 57.143 0.00 0.00 0.00 3.69
216 217 3.166560 AGGGTAGGGTATATCCACGAC 57.833 52.381 4.46 0.00 38.11 4.34
224 225 5.087323 AGGGTATATCCACGACTCATTCAT 58.913 41.667 4.46 0.00 38.11 2.57
228 229 7.375834 GGTATATCCACGACTCATTCATGTAA 58.624 38.462 0.00 0.00 35.97 2.41
236 237 6.147821 CACGACTCATTCATGTAATTATCCCC 59.852 42.308 0.00 0.00 0.00 4.81
264 265 0.681175 AACCATTGCCCAAAGCTGAC 59.319 50.000 0.00 0.00 44.23 3.51
266 267 1.243342 CCATTGCCCAAAGCTGACGA 61.243 55.000 0.00 0.00 44.23 4.20
267 268 0.813184 CATTGCCCAAAGCTGACGAT 59.187 50.000 0.00 0.00 44.23 3.73
291 292 2.289565 GGGAAAGTGCCCTAAGATTCG 58.710 52.381 0.00 0.00 45.12 3.34
307 308 3.189287 AGATTCGTGCAAAGTGAATGGAC 59.811 43.478 8.83 0.00 35.98 4.02
311 312 1.154225 GCAAAGTGAATGGACGGCG 60.154 57.895 4.80 4.80 0.00 6.46
313 314 1.434555 CAAAGTGAATGGACGGCGTA 58.565 50.000 14.74 0.00 0.00 4.42
345 346 4.711399 TGCTGGGAAATGTCTCATATCTG 58.289 43.478 0.00 0.00 32.34 2.90
348 349 5.685861 GCTGGGAAATGTCTCATATCTGACA 60.686 44.000 9.04 9.04 45.56 3.58
353 354 2.747436 TGTCTCATATCTGACATGCGC 58.253 47.619 0.00 0.00 38.15 6.09
397 398 9.787435 TTATTATTGTCAGTTCAACACCTAAGT 57.213 29.630 0.00 0.00 0.00 2.24
411 412 7.177744 TCAACACCTAAGTTTTTCCTCTGTTTT 59.822 33.333 0.00 0.00 0.00 2.43
417 418 5.890424 AGTTTTTCCTCTGTTTTCGTTGA 57.110 34.783 0.00 0.00 0.00 3.18
418 419 5.880341 AGTTTTTCCTCTGTTTTCGTTGAG 58.120 37.500 0.00 0.00 0.00 3.02
419 420 5.414765 AGTTTTTCCTCTGTTTTCGTTGAGT 59.585 36.000 0.00 0.00 0.00 3.41
422 423 1.070577 CCTCTGTTTTCGTTGAGTGCG 60.071 52.381 0.00 0.00 0.00 5.34
428 429 0.741574 TTTCGTTGAGTGCGTGTGGT 60.742 50.000 0.00 0.00 0.00 4.16
450 451 3.339547 CCAGTCCGGTTTCATGGTT 57.660 52.632 0.00 0.00 0.00 3.67
451 452 1.165270 CCAGTCCGGTTTCATGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
452 453 1.544537 CCAGTCCGGTTTCATGGTTCA 60.545 52.381 0.00 0.00 0.00 3.18
453 454 2.436417 CAGTCCGGTTTCATGGTTCAT 58.564 47.619 0.00 0.00 0.00 2.57
454 455 2.420022 CAGTCCGGTTTCATGGTTCATC 59.580 50.000 0.00 0.00 0.00 2.92
455 456 1.743394 GTCCGGTTTCATGGTTCATCC 59.257 52.381 0.00 0.00 0.00 3.51
470 471 4.219944 GGTTCATCCATAATGCTGCATGAT 59.780 41.667 17.00 11.65 35.17 2.45
487 488 4.590226 CATGATTGCAACGATGATCGAAA 58.410 39.130 22.88 10.17 43.74 3.46
518 552 6.515272 TGAAGATTAAATGAAGAAGCACCC 57.485 37.500 0.00 0.00 0.00 4.61
604 638 4.320057 GCTCACTGAAACATGACAAAGAGG 60.320 45.833 0.00 0.00 0.00 3.69
605 639 4.136796 TCACTGAAACATGACAAAGAGGG 58.863 43.478 0.00 0.00 0.00 4.30
608 649 1.546029 GAAACATGACAAAGAGGGGCC 59.454 52.381 0.00 0.00 0.00 5.80
617 658 1.133482 CAAAGAGGGGCCGGGAAATAT 60.133 52.381 2.18 0.00 0.00 1.28
619 660 1.074951 GAGGGGCCGGGAAATATGG 59.925 63.158 2.18 0.00 0.00 2.74
697 739 6.478512 TGTACCAAAAATTTTCCTTGAGCT 57.521 33.333 3.41 0.00 0.00 4.09
698 740 6.279882 TGTACCAAAAATTTTCCTTGAGCTG 58.720 36.000 3.41 0.00 0.00 4.24
699 741 5.357742 ACCAAAAATTTTCCTTGAGCTGT 57.642 34.783 3.41 0.00 0.00 4.40
700 742 5.744171 ACCAAAAATTTTCCTTGAGCTGTT 58.256 33.333 3.41 0.00 0.00 3.16
761 831 5.709966 AGAAGACGATTAAAATTGGCAACC 58.290 37.500 0.00 0.00 29.56 3.77
789 864 1.589993 CAGCTGCGATACGACCCAG 60.590 63.158 0.00 0.00 0.00 4.45
793 868 1.401670 GCTGCGATACGACCCAGATAG 60.402 57.143 0.00 0.00 0.00 2.08
816 891 3.197790 CATCGCGGCAGGTTCCAG 61.198 66.667 6.13 0.00 0.00 3.86
817 892 3.706373 ATCGCGGCAGGTTCCAGT 61.706 61.111 6.13 0.00 0.00 4.00
818 893 3.254024 ATCGCGGCAGGTTCCAGTT 62.254 57.895 6.13 0.00 0.00 3.16
819 894 3.423154 CGCGGCAGGTTCCAGTTC 61.423 66.667 0.00 0.00 0.00 3.01
820 895 2.281484 GCGGCAGGTTCCAGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
821 896 2.328099 GCGGCAGGTTCCAGTTCAG 61.328 63.158 0.00 0.00 0.00 3.02
822 897 1.071471 CGGCAGGTTCCAGTTCAGT 59.929 57.895 0.00 0.00 0.00 3.41
823 898 1.230635 CGGCAGGTTCCAGTTCAGTG 61.231 60.000 0.00 0.00 0.00 3.66
882 959 4.939271 TGATACACACACCCACATATACG 58.061 43.478 0.00 0.00 0.00 3.06
883 960 4.645588 TGATACACACACCCACATATACGA 59.354 41.667 0.00 0.00 0.00 3.43
884 961 3.965379 ACACACACCCACATATACGAA 57.035 42.857 0.00 0.00 0.00 3.85
885 962 4.274602 ACACACACCCACATATACGAAA 57.725 40.909 0.00 0.00 0.00 3.46
933 1010 1.916273 TTCCTCCGCCAGCAGGTTA 60.916 57.895 0.00 0.00 37.19 2.85
967 1044 3.432782 CTCGGTAGGTACAGTTTTAGCG 58.567 50.000 0.00 1.11 38.09 4.26
970 1047 3.365820 CGGTAGGTACAGTTTTAGCGTTG 59.634 47.826 0.00 0.00 33.72 4.10
988 1065 2.338785 GGGAAGCACAAGAGCAGCC 61.339 63.158 0.00 0.00 36.85 4.85
991 1068 1.584380 GAAGCACAAGAGCAGCCAGG 61.584 60.000 0.00 0.00 36.85 4.45
992 1069 2.282040 GCACAAGAGCAGCCAGGT 60.282 61.111 0.00 0.00 0.00 4.00
1130 1226 4.814294 GAAGGACGCCGTCGCCAT 62.814 66.667 11.60 0.00 39.84 4.40
1204 1300 1.961180 CTTCGACGGGATCTTGGGCT 61.961 60.000 0.00 0.00 0.00 5.19
1220 1316 0.034670 GGCTCCATGTTCTCCAAGCT 60.035 55.000 0.00 0.00 0.00 3.74
1591 1694 5.242393 CCAACACCATCTCAGAAATTCAGTT 59.758 40.000 0.00 0.00 0.00 3.16
1603 1706 7.936584 TCAGAAATTCAGTTTATGTTCCGTTT 58.063 30.769 0.00 0.00 39.45 3.60
1604 1707 8.073768 TCAGAAATTCAGTTTATGTTCCGTTTC 58.926 33.333 0.00 0.00 39.45 2.78
1605 1708 7.326063 CAGAAATTCAGTTTATGTTCCGTTTCC 59.674 37.037 0.00 0.00 34.98 3.13
1606 1709 4.735662 TTCAGTTTATGTTCCGTTTCCG 57.264 40.909 0.00 0.00 0.00 4.30
1607 1710 3.731089 TCAGTTTATGTTCCGTTTCCGT 58.269 40.909 0.00 0.00 0.00 4.69
1608 1711 4.128643 TCAGTTTATGTTCCGTTTCCGTT 58.871 39.130 0.00 0.00 0.00 4.44
1724 1830 9.170584 GATTGTTCAAAGAGTTTTAAGCTACAC 57.829 33.333 0.00 0.00 0.00 2.90
1791 1900 4.097892 AGAAACACCAAAAGTTGTAGGCAG 59.902 41.667 0.00 0.00 0.00 4.85
1909 2091 1.360192 GTTTGGCTCTGTGTGCACC 59.640 57.895 15.69 6.37 0.00 5.01
1913 2095 0.395586 TGGCTCTGTGTGCACCTTTT 60.396 50.000 15.69 0.00 0.00 2.27
1914 2096 0.031178 GGCTCTGTGTGCACCTTTTG 59.969 55.000 15.69 3.14 0.00 2.44
1916 2098 1.405105 GCTCTGTGTGCACCTTTTGAA 59.595 47.619 15.69 0.00 0.00 2.69
1918 2100 3.491447 GCTCTGTGTGCACCTTTTGAATT 60.491 43.478 15.69 0.00 0.00 2.17
1919 2101 4.044336 TCTGTGTGCACCTTTTGAATTG 57.956 40.909 15.69 0.00 0.00 2.32
1920 2102 3.698539 TCTGTGTGCACCTTTTGAATTGA 59.301 39.130 15.69 0.00 0.00 2.57
1921 2103 4.159321 TCTGTGTGCACCTTTTGAATTGAA 59.841 37.500 15.69 0.00 0.00 2.69
1922 2104 4.180057 TGTGTGCACCTTTTGAATTGAAC 58.820 39.130 15.69 1.04 0.00 3.18
1923 2105 3.242712 GTGTGCACCTTTTGAATTGAACG 59.757 43.478 15.69 0.00 0.00 3.95
1940 2122 3.768632 GACTAGGTCGTGCAAGCG 58.231 61.111 0.00 0.00 0.00 4.68
1965 2147 7.548097 GTCTGTTCTATTCTATGTGAGGACAA 58.452 38.462 0.00 0.00 35.11 3.18
2009 2207 8.927675 TTATTTACCTGTGTTGGTACTTGAAT 57.072 30.769 0.00 0.00 41.75 2.57
2090 2321 7.780745 TCACCAACTTTTCCCATTAAAGAACTA 59.219 33.333 0.00 0.00 36.38 2.24
2260 2506 7.103641 CCAACATTTCTCCTAACAGCTACTAA 58.896 38.462 0.00 0.00 0.00 2.24
2263 2509 7.908453 ACATTTCTCCTAACAGCTACTAACTT 58.092 34.615 0.00 0.00 0.00 2.66
2286 2532 3.424703 AGTACAACAGGAATGCATGCTT 58.575 40.909 20.33 10.16 0.00 3.91
2287 2533 4.588899 AGTACAACAGGAATGCATGCTTA 58.411 39.130 20.33 0.00 0.00 3.09
2364 2974 0.613260 AGTTCTATGTTCGCAGGCCA 59.387 50.000 5.01 0.00 0.00 5.36
2468 3080 8.962884 AATATAGTTGTGTGCATCATCTAACA 57.037 30.769 12.97 7.67 0.00 2.41
2497 3109 4.745478 GCCATGGGTATATCGTCCTTTTCA 60.745 45.833 15.13 0.00 0.00 2.69
2521 3133 9.265901 TCAAAAAGAAAAGAAAAATGTGTGTCA 57.734 25.926 0.00 0.00 0.00 3.58
2582 3194 0.041238 TCGTCCTCCTCACCATCCTT 59.959 55.000 0.00 0.00 0.00 3.36
2744 5989 6.115446 TGAGACAAAGATGTGGATATCAACC 58.885 40.000 7.81 0.00 40.74 3.77
2794 6041 4.608269 TGGGTATGAAAGATGCAATTGGA 58.392 39.130 7.72 4.46 0.00 3.53
2933 6182 5.186198 GCATGATAGGTGTTGGTCTTACTT 58.814 41.667 0.00 0.00 0.00 2.24
3208 6495 2.348666 ACTTGAACAGATTATGCGTCGC 59.651 45.455 11.10 11.10 0.00 5.19
3210 6497 0.229753 GAACAGATTATGCGTCGCCG 59.770 55.000 15.88 0.00 37.07 6.46
3240 6527 6.545504 TCGTAAGTCTAACGTCTAAACTGT 57.454 37.500 0.00 0.00 41.08 3.55
3241 6528 6.365839 TCGTAAGTCTAACGTCTAAACTGTG 58.634 40.000 0.00 0.00 41.08 3.66
3352 6648 1.070175 CCTGTGACGTTTAAAGGTGCG 60.070 52.381 17.67 6.35 0.00 5.34
3989 7338 1.541118 TTCCTGATCCTGGCCACCA 60.541 57.895 0.00 0.00 0.00 4.17
4052 7401 4.383880 CCTTCATCCAGAGAAGATTGAGCA 60.384 45.833 4.61 0.00 44.00 4.26
4240 7602 6.642540 CCTGAACTTTTAGGAAGTGATTTTGC 59.357 38.462 0.00 0.00 36.11 3.68
4313 7675 8.947055 AAACTTTGTTGCTGTCTTAATGATTT 57.053 26.923 0.00 0.00 0.00 2.17
4387 7752 7.726216 TCAACATGGATCATCGTTAAGACTAT 58.274 34.615 0.00 0.00 0.00 2.12
4544 7912 9.002061 AGAGTATGTTTACTAGTAGTACTCCCT 57.998 37.037 24.60 15.04 38.81 4.20
4550 7918 7.897565 TGTTTACTAGTAGTACTCCCTCCATTT 59.102 37.037 9.62 0.00 28.93 2.32
4552 7920 5.456779 ACTAGTAGTACTCCCTCCATTTCC 58.543 45.833 5.96 0.00 0.00 3.13
4553 7921 4.348020 AGTAGTACTCCCTCCATTTCCA 57.652 45.455 0.00 0.00 0.00 3.53
4554 7922 4.897051 AGTAGTACTCCCTCCATTTCCAT 58.103 43.478 0.00 0.00 0.00 3.41
4556 7924 6.078664 AGTAGTACTCCCTCCATTTCCATAG 58.921 44.000 0.00 0.00 0.00 2.23
4557 7925 4.897051 AGTACTCCCTCCATTTCCATAGT 58.103 43.478 0.00 0.00 0.00 2.12
4567 7937 7.234782 CCCTCCATTTCCATAGTGTAGTACATA 59.765 40.741 6.21 1.09 0.00 2.29
4624 7999 9.498176 TTGGACCAAGTTTATAGAGAAAACTAC 57.502 33.333 1.69 0.00 44.35 2.73
4714 8090 7.872483 CAGGTGCCTGAAAAGTTTATATGTTTT 59.128 33.333 12.66 0.00 46.30 2.43
4737 8113 4.058817 AGTTGATTGTTCTCTGAACCGTC 58.941 43.478 7.81 6.61 0.00 4.79
4787 8163 7.963532 AGAAACTATTTGTCCTGAGTTGACTA 58.036 34.615 0.00 0.00 32.57 2.59
4789 8165 7.964604 AACTATTTGTCCTGAGTTGACTAAC 57.035 36.000 0.00 0.00 31.98 2.34
4798 8174 7.764443 TGTCCTGAGTTGACTAACTAATTATGC 59.236 37.037 0.00 0.00 46.79 3.14
4820 8196 7.817418 TGCCCTTTCAGTTATATTCAATACC 57.183 36.000 0.00 0.00 0.00 2.73
4829 8205 6.375455 CAGTTATATTCAATACCCAGCCCATC 59.625 42.308 0.00 0.00 0.00 3.51
4833 8209 1.562008 TCAATACCCAGCCCATCGAAA 59.438 47.619 0.00 0.00 0.00 3.46
4856 8232 6.402981 ACCCAACAGGGAGAAAGTATTATT 57.597 37.500 7.71 0.00 46.20 1.40
4857 8233 6.800890 ACCCAACAGGGAGAAAGTATTATTT 58.199 36.000 7.71 0.00 46.20 1.40
4866 8242 6.038271 GGGAGAAAGTATTATTTGTGTCGCAT 59.962 38.462 0.00 0.00 0.00 4.73
4879 8255 3.373748 TGTGTCGCATGATTGATGTTACC 59.626 43.478 0.00 0.00 34.14 2.85
4884 8260 5.049828 TCGCATGATTGATGTTACCTACTG 58.950 41.667 0.00 0.00 34.14 2.74
4955 8356 3.433274 GCATGCACATACGCTATACATGT 59.567 43.478 14.21 2.69 36.63 3.21
4961 8362 5.531122 ACATACGCTATACATGTGAACCT 57.469 39.130 9.11 0.00 31.83 3.50
5024 8425 9.878599 GACACACATACACCATAATTATAAAGC 57.121 33.333 0.00 0.00 0.00 3.51
5077 8478 5.189736 TCAACCTAGTCTCACCATTATGCTT 59.810 40.000 0.00 0.00 0.00 3.91
5078 8479 5.283457 ACCTAGTCTCACCATTATGCTTC 57.717 43.478 0.00 0.00 0.00 3.86
5079 8480 4.101741 ACCTAGTCTCACCATTATGCTTCC 59.898 45.833 0.00 0.00 0.00 3.46
5080 8481 3.185246 AGTCTCACCATTATGCTTCCG 57.815 47.619 0.00 0.00 0.00 4.30
5081 8482 2.158900 AGTCTCACCATTATGCTTCCGG 60.159 50.000 0.00 0.00 0.00 5.14
5082 8483 1.140852 TCTCACCATTATGCTTCCGGG 59.859 52.381 0.00 0.00 0.00 5.73
5083 8484 1.140852 CTCACCATTATGCTTCCGGGA 59.859 52.381 0.00 0.00 0.00 5.14
5084 8485 1.774254 TCACCATTATGCTTCCGGGAT 59.226 47.619 0.00 0.00 0.00 3.85
5085 8486 1.881973 CACCATTATGCTTCCGGGATG 59.118 52.381 0.00 0.68 0.00 3.51
5086 8487 1.774254 ACCATTATGCTTCCGGGATGA 59.226 47.619 13.68 0.21 0.00 2.92
5087 8488 2.174639 ACCATTATGCTTCCGGGATGAA 59.825 45.455 13.68 3.47 0.00 2.57
5088 8489 2.554032 CCATTATGCTTCCGGGATGAAC 59.446 50.000 13.68 0.00 0.00 3.18
5089 8490 3.480470 CATTATGCTTCCGGGATGAACT 58.520 45.455 13.68 0.42 0.00 3.01
5090 8491 2.620251 TATGCTTCCGGGATGAACTG 57.380 50.000 13.68 0.00 0.00 3.16
5091 8492 0.911769 ATGCTTCCGGGATGAACTGA 59.088 50.000 13.68 0.00 0.00 3.41
5092 8493 0.250234 TGCTTCCGGGATGAACTGAG 59.750 55.000 13.68 0.00 0.00 3.35
5093 8494 0.537188 GCTTCCGGGATGAACTGAGA 59.463 55.000 13.68 0.00 0.00 3.27
5094 8495 1.740718 GCTTCCGGGATGAACTGAGAC 60.741 57.143 13.68 0.00 0.00 3.36
5095 8496 0.902531 TTCCGGGATGAACTGAGACC 59.097 55.000 0.00 0.00 0.00 3.85
5096 8497 0.252057 TCCGGGATGAACTGAGACCA 60.252 55.000 0.00 0.00 0.00 4.02
5097 8498 0.108138 CCGGGATGAACTGAGACCAC 60.108 60.000 0.00 0.00 0.00 4.16
5098 8499 0.458543 CGGGATGAACTGAGACCACG 60.459 60.000 0.00 0.00 0.00 4.94
5099 8500 0.608640 GGGATGAACTGAGACCACGT 59.391 55.000 0.00 0.00 0.00 4.49
5100 8501 1.002087 GGGATGAACTGAGACCACGTT 59.998 52.381 0.00 0.00 0.00 3.99
5101 8502 2.069273 GGATGAACTGAGACCACGTTG 58.931 52.381 0.00 0.00 0.00 4.10
5102 8503 2.069273 GATGAACTGAGACCACGTTGG 58.931 52.381 2.92 2.92 45.02 3.77
5103 8504 0.531974 TGAACTGAGACCACGTTGGC 60.532 55.000 4.23 0.00 42.67 4.52
5104 8505 1.227853 AACTGAGACCACGTTGGCC 60.228 57.895 0.00 0.00 42.67 5.36
5105 8506 1.696097 AACTGAGACCACGTTGGCCT 61.696 55.000 3.32 0.00 42.67 5.19
5106 8507 1.374758 CTGAGACCACGTTGGCCTC 60.375 63.158 3.32 11.52 45.84 4.70
5107 8508 2.047179 GAGACCACGTTGGCCTCC 60.047 66.667 3.32 0.00 40.63 4.30
5108 8509 2.526873 AGACCACGTTGGCCTCCT 60.527 61.111 3.32 0.00 42.67 3.69
5109 8510 2.047179 GACCACGTTGGCCTCCTC 60.047 66.667 3.32 0.00 42.67 3.71
5110 8511 2.526873 ACCACGTTGGCCTCCTCT 60.527 61.111 3.32 0.00 42.67 3.69
5111 8512 2.046892 CCACGTTGGCCTCCTCTG 60.047 66.667 3.32 0.00 0.00 3.35
5112 8513 2.583441 CCACGTTGGCCTCCTCTGA 61.583 63.158 3.32 0.00 0.00 3.27
5113 8514 1.079543 CACGTTGGCCTCCTCTGAG 60.080 63.158 3.32 0.00 38.42 3.35
5135 8536 0.815734 TCGGAAGAGGGAAAGCTACG 59.184 55.000 0.00 0.00 34.84 3.51
5136 8537 0.806492 CGGAAGAGGGAAAGCTACGC 60.806 60.000 0.00 0.00 0.00 4.42
5137 8538 0.249398 GGAAGAGGGAAAGCTACGCA 59.751 55.000 9.71 0.00 0.00 5.24
5138 8539 1.338769 GGAAGAGGGAAAGCTACGCAA 60.339 52.381 9.71 0.00 0.00 4.85
5140 8541 0.250513 AGAGGGAAAGCTACGCAAGG 59.749 55.000 9.71 0.00 46.39 3.61
5141 8542 1.369839 GAGGGAAAGCTACGCAAGGC 61.370 60.000 9.71 0.00 46.39 4.35
5168 8569 4.829588 GCTTGGCGAGGGTACTAC 57.170 61.111 3.44 0.00 0.00 2.73
5169 8570 1.226888 GCTTGGCGAGGGTACTACG 60.227 63.158 3.44 0.00 0.00 3.51
5170 8571 1.436336 CTTGGCGAGGGTACTACGG 59.564 63.158 0.00 0.00 0.00 4.02
5172 8573 3.909285 GGCGAGGGTACTACGGCC 61.909 72.222 16.92 13.02 44.46 6.13
5173 8574 3.909285 GCGAGGGTACTACGGCCC 61.909 72.222 0.00 0.00 45.16 5.80
5177 8578 3.892581 GGGTACTACGGCCCGACG 61.893 72.222 11.71 1.90 34.90 5.12
5179 8580 2.700773 GGTACTACGGCCCGACGTT 61.701 63.158 11.71 0.00 46.25 3.99
5180 8581 1.212751 GTACTACGGCCCGACGTTT 59.787 57.895 11.71 0.00 46.25 3.60
5181 8582 1.072666 GTACTACGGCCCGACGTTTG 61.073 60.000 11.71 0.00 46.25 2.93
5182 8583 2.817470 TACTACGGCCCGACGTTTGC 62.817 60.000 11.71 0.00 46.25 3.68
5185 8586 4.745751 CGGCCCGACGTTTGCCTA 62.746 66.667 18.03 0.00 43.12 3.93
5186 8587 2.818274 GGCCCGACGTTTGCCTAG 60.818 66.667 14.49 0.00 42.01 3.02
5187 8588 3.497031 GCCCGACGTTTGCCTAGC 61.497 66.667 0.00 0.00 0.00 3.42
5188 8589 2.818274 CCCGACGTTTGCCTAGCC 60.818 66.667 0.00 0.00 0.00 3.93
5189 8590 2.818274 CCGACGTTTGCCTAGCCC 60.818 66.667 0.00 0.00 0.00 5.19
5190 8591 2.818274 CGACGTTTGCCTAGCCCC 60.818 66.667 0.00 0.00 0.00 5.80
5191 8592 2.669240 GACGTTTGCCTAGCCCCT 59.331 61.111 0.00 0.00 0.00 4.79
5192 8593 1.449778 GACGTTTGCCTAGCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
5193 8594 2.124695 CGTTTGCCTAGCCCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
5194 8595 2.124695 GTTTGCCTAGCCCCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
5195 8596 4.109675 TTTGCCTAGCCCCTCCGC 62.110 66.667 0.00 0.00 0.00 5.54
5200 8601 4.548513 CTAGCCCCTCCGCCTCCT 62.549 72.222 0.00 0.00 0.00 3.69
5201 8602 3.107975 TAGCCCCTCCGCCTCCTA 61.108 66.667 0.00 0.00 0.00 2.94
5202 8603 3.148184 TAGCCCCTCCGCCTCCTAG 62.148 68.421 0.00 0.00 0.00 3.02
5207 8608 4.548513 CTCCGCCTCCTAGCCCCT 62.549 72.222 0.00 0.00 0.00 4.79
5208 8609 4.541648 TCCGCCTCCTAGCCCCTC 62.542 72.222 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.176752 CTTCCCCCAGCCGGCTAC 62.177 72.222 32.30 0.00 0.00 3.58
22 23 2.893682 AAGCATCTAAGGCGTGGGGC 62.894 60.000 0.00 0.00 42.51 5.80
23 24 1.097547 CAAGCATCTAAGGCGTGGGG 61.098 60.000 0.00 0.00 37.15 4.96
24 25 0.107703 TCAAGCATCTAAGGCGTGGG 60.108 55.000 0.00 0.00 40.44 4.61
25 26 1.667724 CTTCAAGCATCTAAGGCGTGG 59.332 52.381 0.00 0.00 40.44 4.94
26 27 1.667724 CCTTCAAGCATCTAAGGCGTG 59.332 52.381 0.00 0.00 41.23 5.34
27 28 2.029838 CCTTCAAGCATCTAAGGCGT 57.970 50.000 0.00 0.00 33.84 5.68
30 31 2.159043 TCGAGCCTTCAAGCATCTAAGG 60.159 50.000 0.00 0.00 42.27 2.69
31 32 3.170791 TCGAGCCTTCAAGCATCTAAG 57.829 47.619 0.00 0.00 34.23 2.18
32 33 3.722147 GATCGAGCCTTCAAGCATCTAA 58.278 45.455 0.00 0.00 34.23 2.10
33 34 2.287849 CGATCGAGCCTTCAAGCATCTA 60.288 50.000 10.26 0.00 34.23 1.98
34 35 1.537776 CGATCGAGCCTTCAAGCATCT 60.538 52.381 10.26 0.00 34.23 2.90
35 36 0.857935 CGATCGAGCCTTCAAGCATC 59.142 55.000 10.26 0.00 34.23 3.91
36 37 0.531532 CCGATCGAGCCTTCAAGCAT 60.532 55.000 18.66 0.00 34.23 3.79
37 38 1.153568 CCGATCGAGCCTTCAAGCA 60.154 57.895 18.66 0.00 34.23 3.91
38 39 1.148759 GACCGATCGAGCCTTCAAGC 61.149 60.000 18.66 0.00 0.00 4.01
39 40 0.457851 AGACCGATCGAGCCTTCAAG 59.542 55.000 18.66 0.00 0.00 3.02
40 41 1.758936 TAGACCGATCGAGCCTTCAA 58.241 50.000 18.66 0.00 0.00 2.69
41 42 1.982660 ATAGACCGATCGAGCCTTCA 58.017 50.000 18.66 0.00 0.00 3.02
42 43 4.705337 ATTATAGACCGATCGAGCCTTC 57.295 45.455 18.66 4.71 0.00 3.46
43 44 5.470047 AAATTATAGACCGATCGAGCCTT 57.530 39.130 18.66 0.74 0.00 4.35
44 45 5.230942 CAAAATTATAGACCGATCGAGCCT 58.769 41.667 18.66 12.37 0.00 4.58
45 46 4.143094 GCAAAATTATAGACCGATCGAGCC 60.143 45.833 18.66 4.95 0.00 4.70
46 47 4.686554 AGCAAAATTATAGACCGATCGAGC 59.313 41.667 18.66 7.92 0.00 5.03
47 48 5.920840 TCAGCAAAATTATAGACCGATCGAG 59.079 40.000 18.66 9.42 0.00 4.04
48 49 5.838529 TCAGCAAAATTATAGACCGATCGA 58.161 37.500 18.66 0.00 0.00 3.59
49 50 6.420903 TCTTCAGCAAAATTATAGACCGATCG 59.579 38.462 8.51 8.51 0.00 3.69
50 51 7.570324 GCTCTTCAGCAAAATTATAGACCGATC 60.570 40.741 0.00 0.00 46.06 3.69
51 52 6.203723 GCTCTTCAGCAAAATTATAGACCGAT 59.796 38.462 0.00 0.00 46.06 4.18
52 53 5.523916 GCTCTTCAGCAAAATTATAGACCGA 59.476 40.000 0.00 0.00 46.06 4.69
53 54 5.742446 GCTCTTCAGCAAAATTATAGACCG 58.258 41.667 0.00 0.00 46.06 4.79
89 90 1.044790 TAACCACGGGTAGCCTAGCC 61.045 60.000 10.00 10.00 42.81 3.93
90 91 1.046204 ATAACCACGGGTAGCCTAGC 58.954 55.000 9.73 0.00 33.12 3.42
91 92 3.832615 AAATAACCACGGGTAGCCTAG 57.167 47.619 9.73 0.82 33.12 3.02
92 93 4.289245 AGTAAATAACCACGGGTAGCCTA 58.711 43.478 9.73 0.00 33.12 3.93
93 94 3.109928 AGTAAATAACCACGGGTAGCCT 58.890 45.455 9.73 0.00 33.12 4.58
94 95 3.461061 GAGTAAATAACCACGGGTAGCC 58.539 50.000 0.00 0.00 33.12 3.93
95 96 3.461061 GGAGTAAATAACCACGGGTAGC 58.539 50.000 0.00 0.00 33.12 3.58
96 97 3.381272 TCGGAGTAAATAACCACGGGTAG 59.619 47.826 0.00 0.00 33.12 3.18
97 98 3.130340 GTCGGAGTAAATAACCACGGGTA 59.870 47.826 0.00 0.00 33.12 3.69
98 99 2.094026 GTCGGAGTAAATAACCACGGGT 60.094 50.000 0.00 0.00 37.65 5.28
99 100 2.094078 TGTCGGAGTAAATAACCACGGG 60.094 50.000 0.00 0.00 0.00 5.28
100 101 3.184541 CTGTCGGAGTAAATAACCACGG 58.815 50.000 0.00 0.00 0.00 4.94
101 102 3.841643 ACTGTCGGAGTAAATAACCACG 58.158 45.455 0.00 0.00 30.86 4.94
102 103 4.813027 TGACTGTCGGAGTAAATAACCAC 58.187 43.478 2.98 0.00 33.83 4.16
103 104 5.416083 CATGACTGTCGGAGTAAATAACCA 58.584 41.667 2.98 0.00 33.83 3.67
104 105 4.809426 CCATGACTGTCGGAGTAAATAACC 59.191 45.833 2.98 0.00 33.83 2.85
105 106 4.809426 CCCATGACTGTCGGAGTAAATAAC 59.191 45.833 2.98 0.00 33.83 1.89
106 107 4.468510 ACCCATGACTGTCGGAGTAAATAA 59.531 41.667 7.14 0.00 33.83 1.40
107 108 4.028131 ACCCATGACTGTCGGAGTAAATA 58.972 43.478 7.14 0.00 33.83 1.40
108 109 2.838202 ACCCATGACTGTCGGAGTAAAT 59.162 45.455 7.14 0.00 33.83 1.40
109 110 2.253610 ACCCATGACTGTCGGAGTAAA 58.746 47.619 7.14 0.00 33.83 2.01
110 111 1.933021 ACCCATGACTGTCGGAGTAA 58.067 50.000 7.14 0.00 33.83 2.24
111 112 1.548719 CAACCCATGACTGTCGGAGTA 59.451 52.381 7.14 0.00 33.83 2.59
112 113 0.321671 CAACCCATGACTGTCGGAGT 59.678 55.000 7.14 0.00 37.76 3.85
113 114 0.608130 TCAACCCATGACTGTCGGAG 59.392 55.000 7.14 0.00 31.50 4.63
114 115 1.001974 CTTCAACCCATGACTGTCGGA 59.998 52.381 7.14 0.00 37.92 4.55
115 116 1.270839 ACTTCAACCCATGACTGTCGG 60.271 52.381 2.98 1.05 37.92 4.79
116 117 2.169832 ACTTCAACCCATGACTGTCG 57.830 50.000 2.98 0.00 37.92 4.35
117 118 2.554032 CCAACTTCAACCCATGACTGTC 59.446 50.000 0.00 0.00 37.92 3.51
118 119 2.586425 CCAACTTCAACCCATGACTGT 58.414 47.619 0.00 0.00 37.92 3.55
119 120 1.270550 GCCAACTTCAACCCATGACTG 59.729 52.381 0.00 0.00 37.92 3.51
120 121 1.620822 GCCAACTTCAACCCATGACT 58.379 50.000 0.00 0.00 37.92 3.41
121 122 0.603065 GGCCAACTTCAACCCATGAC 59.397 55.000 0.00 0.00 37.92 3.06
122 123 0.482446 AGGCCAACTTCAACCCATGA 59.518 50.000 5.01 0.00 35.85 3.07
123 124 0.890683 GAGGCCAACTTCAACCCATG 59.109 55.000 5.01 0.00 0.00 3.66
124 125 0.482446 TGAGGCCAACTTCAACCCAT 59.518 50.000 5.01 0.00 0.00 4.00
125 126 0.467290 GTGAGGCCAACTTCAACCCA 60.467 55.000 5.01 0.00 0.00 4.51
126 127 0.178990 AGTGAGGCCAACTTCAACCC 60.179 55.000 5.01 0.00 0.00 4.11
127 128 1.338020 CAAGTGAGGCCAACTTCAACC 59.662 52.381 18.26 0.00 0.00 3.77
128 129 1.269257 GCAAGTGAGGCCAACTTCAAC 60.269 52.381 18.26 9.38 0.00 3.18
129 130 1.032014 GCAAGTGAGGCCAACTTCAA 58.968 50.000 18.26 0.00 0.00 2.69
130 131 0.183492 AGCAAGTGAGGCCAACTTCA 59.817 50.000 18.26 4.64 0.00 3.02
131 132 0.877743 GAGCAAGTGAGGCCAACTTC 59.122 55.000 18.26 13.66 0.00 3.01
132 133 0.183492 TGAGCAAGTGAGGCCAACTT 59.817 50.000 16.02 16.02 0.00 2.66
133 134 0.250640 CTGAGCAAGTGAGGCCAACT 60.251 55.000 5.01 5.19 0.00 3.16
134 135 0.536006 ACTGAGCAAGTGAGGCCAAC 60.536 55.000 5.01 2.27 37.88 3.77
135 136 1.839191 ACTGAGCAAGTGAGGCCAA 59.161 52.632 5.01 0.00 37.88 4.52
136 137 3.567308 ACTGAGCAAGTGAGGCCA 58.433 55.556 5.01 0.00 37.88 5.36
143 144 1.757306 CCCACTCCACTGAGCAAGT 59.243 57.895 0.00 0.00 42.74 3.16
144 145 1.002868 CCCCACTCCACTGAGCAAG 60.003 63.158 0.00 0.00 42.74 4.01
145 146 1.059584 TTCCCCACTCCACTGAGCAA 61.060 55.000 0.00 0.00 42.74 3.91
146 147 1.461268 TTCCCCACTCCACTGAGCA 60.461 57.895 0.00 0.00 42.74 4.26
147 148 1.194781 TCTTCCCCACTCCACTGAGC 61.195 60.000 0.00 0.00 42.74 4.26
148 149 0.901124 CTCTTCCCCACTCCACTGAG 59.099 60.000 0.00 0.00 44.62 3.35
149 150 0.545309 CCTCTTCCCCACTCCACTGA 60.545 60.000 0.00 0.00 0.00 3.41
150 151 0.545309 TCCTCTTCCCCACTCCACTG 60.545 60.000 0.00 0.00 0.00 3.66
151 152 0.193574 TTCCTCTTCCCCACTCCACT 59.806 55.000 0.00 0.00 0.00 4.00
152 153 1.064825 TTTCCTCTTCCCCACTCCAC 58.935 55.000 0.00 0.00 0.00 4.02
153 154 1.423921 GTTTTCCTCTTCCCCACTCCA 59.576 52.381 0.00 0.00 0.00 3.86
154 155 1.705745 AGTTTTCCTCTTCCCCACTCC 59.294 52.381 0.00 0.00 0.00 3.85
155 156 2.372172 TCAGTTTTCCTCTTCCCCACTC 59.628 50.000 0.00 0.00 0.00 3.51
156 157 2.106684 GTCAGTTTTCCTCTTCCCCACT 59.893 50.000 0.00 0.00 0.00 4.00
157 158 2.106684 AGTCAGTTTTCCTCTTCCCCAC 59.893 50.000 0.00 0.00 0.00 4.61
158 159 2.106511 CAGTCAGTTTTCCTCTTCCCCA 59.893 50.000 0.00 0.00 0.00 4.96
159 160 2.553247 CCAGTCAGTTTTCCTCTTCCCC 60.553 54.545 0.00 0.00 0.00 4.81
160 161 2.553247 CCCAGTCAGTTTTCCTCTTCCC 60.553 54.545 0.00 0.00 0.00 3.97
161 162 2.553247 CCCCAGTCAGTTTTCCTCTTCC 60.553 54.545 0.00 0.00 0.00 3.46
162 163 2.372172 TCCCCAGTCAGTTTTCCTCTTC 59.628 50.000 0.00 0.00 0.00 2.87
163 164 2.418669 TCCCCAGTCAGTTTTCCTCTT 58.581 47.619 0.00 0.00 0.00 2.85
164 165 2.118403 TCCCCAGTCAGTTTTCCTCT 57.882 50.000 0.00 0.00 0.00 3.69
165 166 2.678190 CGATCCCCAGTCAGTTTTCCTC 60.678 54.545 0.00 0.00 0.00 3.71
166 167 1.279271 CGATCCCCAGTCAGTTTTCCT 59.721 52.381 0.00 0.00 0.00 3.36
167 168 1.679032 CCGATCCCCAGTCAGTTTTCC 60.679 57.143 0.00 0.00 0.00 3.13
168 169 1.679032 CCCGATCCCCAGTCAGTTTTC 60.679 57.143 0.00 0.00 0.00 2.29
169 170 0.328258 CCCGATCCCCAGTCAGTTTT 59.672 55.000 0.00 0.00 0.00 2.43
170 171 1.562672 CCCCGATCCCCAGTCAGTTT 61.563 60.000 0.00 0.00 0.00 2.66
171 172 1.995626 CCCCGATCCCCAGTCAGTT 60.996 63.158 0.00 0.00 0.00 3.16
172 173 2.365635 CCCCGATCCCCAGTCAGT 60.366 66.667 0.00 0.00 0.00 3.41
173 174 2.365635 ACCCCGATCCCCAGTCAG 60.366 66.667 0.00 0.00 0.00 3.51
174 175 2.365105 GACCCCGATCCCCAGTCA 60.365 66.667 0.00 0.00 0.00 3.41
175 176 1.993391 TTGACCCCGATCCCCAGTC 60.993 63.158 0.00 0.00 0.00 3.51
176 177 2.124085 TTGACCCCGATCCCCAGT 59.876 61.111 0.00 0.00 0.00 4.00
177 178 0.689745 TAGTTGACCCCGATCCCCAG 60.690 60.000 0.00 0.00 0.00 4.45
178 179 0.689745 CTAGTTGACCCCGATCCCCA 60.690 60.000 0.00 0.00 0.00 4.96
179 180 1.408453 CCTAGTTGACCCCGATCCCC 61.408 65.000 0.00 0.00 0.00 4.81
180 181 1.408453 CCCTAGTTGACCCCGATCCC 61.408 65.000 0.00 0.00 0.00 3.85
181 182 0.690077 ACCCTAGTTGACCCCGATCC 60.690 60.000 0.00 0.00 0.00 3.36
182 183 1.962100 CTACCCTAGTTGACCCCGATC 59.038 57.143 0.00 0.00 0.00 3.69
183 184 1.412649 CCTACCCTAGTTGACCCCGAT 60.413 57.143 0.00 0.00 0.00 4.18
184 185 0.032813 CCTACCCTAGTTGACCCCGA 60.033 60.000 0.00 0.00 0.00 5.14
185 186 1.047034 CCCTACCCTAGTTGACCCCG 61.047 65.000 0.00 0.00 0.00 5.73
186 187 0.043788 ACCCTACCCTAGTTGACCCC 59.956 60.000 0.00 0.00 0.00 4.95
187 188 2.854736 TACCCTACCCTAGTTGACCC 57.145 55.000 0.00 0.00 0.00 4.46
188 189 5.022122 GGATATACCCTACCCTAGTTGACC 58.978 50.000 0.00 0.00 0.00 4.02
189 190 5.479724 GTGGATATACCCTACCCTAGTTGAC 59.520 48.000 0.00 0.00 38.00 3.18
190 191 5.648247 GTGGATATACCCTACCCTAGTTGA 58.352 45.833 0.00 0.00 38.00 3.18
191 192 4.461781 CGTGGATATACCCTACCCTAGTTG 59.538 50.000 0.00 0.00 38.00 3.16
192 193 4.354987 TCGTGGATATACCCTACCCTAGTT 59.645 45.833 0.00 0.00 38.00 2.24
193 194 3.918912 TCGTGGATATACCCTACCCTAGT 59.081 47.826 0.00 0.00 38.00 2.57
194 195 4.018597 AGTCGTGGATATACCCTACCCTAG 60.019 50.000 0.00 0.00 38.00 3.02
195 196 3.918912 AGTCGTGGATATACCCTACCCTA 59.081 47.826 0.00 0.00 38.00 3.53
196 197 2.720804 AGTCGTGGATATACCCTACCCT 59.279 50.000 0.00 0.00 38.00 4.34
197 198 3.087781 GAGTCGTGGATATACCCTACCC 58.912 54.545 0.00 0.00 38.00 3.69
198 199 3.759581 TGAGTCGTGGATATACCCTACC 58.240 50.000 0.00 0.00 38.00 3.18
199 200 5.475909 TGAATGAGTCGTGGATATACCCTAC 59.524 44.000 0.00 0.00 38.00 3.18
200 201 5.637127 TGAATGAGTCGTGGATATACCCTA 58.363 41.667 0.00 0.00 38.00 3.53
201 202 4.480115 TGAATGAGTCGTGGATATACCCT 58.520 43.478 0.00 0.00 38.00 4.34
236 237 3.508840 GCAATGGTTCGCTCGGGG 61.509 66.667 0.00 0.00 0.00 5.73
240 241 0.109132 CTTTGGGCAATGGTTCGCTC 60.109 55.000 0.00 0.00 0.00 5.03
241 242 1.966762 CTTTGGGCAATGGTTCGCT 59.033 52.632 0.00 0.00 0.00 4.93
264 265 3.508840 GGCACTTTCCCCGCATCG 61.509 66.667 0.00 0.00 0.00 3.84
283 284 5.000591 TCCATTCACTTTGCACGAATCTTA 58.999 37.500 0.00 0.00 0.00 2.10
291 292 0.387239 GCCGTCCATTCACTTTGCAC 60.387 55.000 0.00 0.00 0.00 4.57
311 312 1.886886 TCCCAGCAAACGTCCTTTAC 58.113 50.000 0.00 0.00 0.00 2.01
313 314 1.770294 TTTCCCAGCAAACGTCCTTT 58.230 45.000 0.00 0.00 0.00 3.11
323 324 4.409901 TCAGATATGAGACATTTCCCAGCA 59.590 41.667 0.00 0.00 0.00 4.41
345 346 3.120060 GGAAATCATATCTGGCGCATGTC 60.120 47.826 10.83 0.00 0.00 3.06
348 349 2.079158 CGGAAATCATATCTGGCGCAT 58.921 47.619 10.83 0.00 0.00 4.73
382 383 6.318900 CAGAGGAAAAACTTAGGTGTTGAACT 59.681 38.462 0.00 0.00 0.00 3.01
385 386 5.751586 ACAGAGGAAAAACTTAGGTGTTGA 58.248 37.500 0.00 0.00 0.00 3.18
397 398 5.636837 CACTCAACGAAAACAGAGGAAAAA 58.363 37.500 0.00 0.00 32.52 1.94
411 412 1.149361 GAACCACACGCACTCAACGA 61.149 55.000 0.00 0.00 0.00 3.85
470 471 2.062519 TCGTTTCGATCATCGTTGCAA 58.937 42.857 7.00 0.00 41.35 4.08
479 480 9.885934 TTTAATCTTCATTTTTCGTTTCGATCA 57.114 25.926 0.00 0.00 35.23 2.92
504 505 0.112995 TGGCTGGGTGCTTCTTCATT 59.887 50.000 0.00 0.00 42.39 2.57
547 581 1.140161 CGCCTGGTTTGGATGCATG 59.860 57.895 2.46 0.00 0.00 4.06
548 582 1.304381 ACGCCTGGTTTGGATGCAT 60.304 52.632 0.00 0.00 0.00 3.96
549 583 2.115052 ACGCCTGGTTTGGATGCA 59.885 55.556 0.00 0.00 0.00 3.96
550 584 1.971167 TCACGCCTGGTTTGGATGC 60.971 57.895 0.00 0.00 0.00 3.91
604 638 2.009681 ATTTCCATATTTCCCGGCCC 57.990 50.000 0.00 0.00 0.00 5.80
605 639 3.494223 CCAAATTTCCATATTTCCCGGCC 60.494 47.826 0.00 0.00 0.00 6.13
608 649 6.402222 TGTTTCCAAATTTCCATATTTCCCG 58.598 36.000 0.00 0.00 0.00 5.14
617 658 6.940739 TCTCTTTGTTGTTTCCAAATTTCCA 58.059 32.000 0.00 0.00 31.85 3.53
619 660 9.196552 CCTATCTCTTTGTTGTTTCCAAATTTC 57.803 33.333 0.00 0.00 31.85 2.17
675 717 6.280643 ACAGCTCAAGGAAAATTTTTGGTAC 58.719 36.000 4.63 0.00 0.00 3.34
683 725 4.248691 GCTCAACAGCTCAAGGAAAATT 57.751 40.909 0.00 0.00 43.09 1.82
695 737 1.085091 CACTGGATCTGCTCAACAGC 58.915 55.000 0.00 0.00 46.76 4.40
697 739 2.550855 GGTTCACTGGATCTGCTCAACA 60.551 50.000 0.00 0.00 0.00 3.33
698 740 2.079925 GGTTCACTGGATCTGCTCAAC 58.920 52.381 0.00 0.00 0.00 3.18
699 741 1.980765 AGGTTCACTGGATCTGCTCAA 59.019 47.619 0.00 0.00 0.00 3.02
700 742 1.277273 CAGGTTCACTGGATCTGCTCA 59.723 52.381 0.00 0.00 43.70 4.26
782 857 1.000283 GATGTGGAGCTATCTGGGTCG 60.000 57.143 0.00 0.00 34.90 4.79
789 864 2.024319 GCCGCGATGTGGAGCTATC 61.024 63.158 8.23 0.00 34.74 2.08
816 891 2.059541 GACGCTGTAGAACCACTGAAC 58.940 52.381 0.00 0.00 0.00 3.18
817 892 1.335597 CGACGCTGTAGAACCACTGAA 60.336 52.381 0.00 0.00 0.00 3.02
818 893 0.240145 CGACGCTGTAGAACCACTGA 59.760 55.000 0.00 0.00 0.00 3.41
819 894 1.344942 GCGACGCTGTAGAACCACTG 61.345 60.000 13.73 0.00 0.00 3.66
820 895 1.080705 GCGACGCTGTAGAACCACT 60.081 57.895 13.73 0.00 0.00 4.00
821 896 2.434134 CGCGACGCTGTAGAACCAC 61.434 63.158 19.02 0.00 0.00 4.16
822 897 2.126618 CGCGACGCTGTAGAACCA 60.127 61.111 19.02 0.00 0.00 3.67
823 898 0.454957 TAACGCGACGCTGTAGAACC 60.455 55.000 15.93 0.00 0.00 3.62
927 1004 3.119495 CGAGCCCCTCAAATTTTAACCTG 60.119 47.826 0.00 0.00 0.00 4.00
928 1005 3.089284 CGAGCCCCTCAAATTTTAACCT 58.911 45.455 0.00 0.00 0.00 3.50
929 1006 2.165641 CCGAGCCCCTCAAATTTTAACC 59.834 50.000 0.00 0.00 0.00 2.85
933 1010 2.620627 CCTACCGAGCCCCTCAAATTTT 60.621 50.000 0.00 0.00 0.00 1.82
967 1044 0.595095 CTGCTCTTGTGCTTCCCAAC 59.405 55.000 0.00 0.00 0.00 3.77
970 1047 2.338785 GGCTGCTCTTGTGCTTCCC 61.339 63.158 0.00 0.00 0.00 3.97
988 1065 1.071385 GATGTCCATGGAGGCTACCTG 59.929 57.143 16.81 0.00 37.29 4.00
991 1068 1.040646 TCGATGTCCATGGAGGCTAC 58.959 55.000 16.81 3.82 37.29 3.58
992 1069 1.895798 GATCGATGTCCATGGAGGCTA 59.104 52.381 16.81 2.27 37.29 3.93
1129 1225 0.313043 ACCGTGAACGACTTGACGAT 59.687 50.000 4.03 0.00 39.11 3.73
1130 1226 0.593008 CACCGTGAACGACTTGACGA 60.593 55.000 4.03 0.00 39.11 4.20
1134 1230 1.151777 ACAGCACCGTGAACGACTTG 61.152 55.000 1.65 0.00 43.02 3.16
1204 1300 2.995283 CATGAGCTTGGAGAACATGGA 58.005 47.619 0.00 0.00 35.96 3.41
1220 1316 2.124983 GCAGCCGCTCTTCCATGA 60.125 61.111 0.00 0.00 34.30 3.07
1292 1388 1.012486 GCCCTCGACGTCGTTTTGAT 61.012 55.000 34.40 0.00 40.80 2.57
1603 1706 3.713858 TGAGAACTGAAACGTAACGGA 57.286 42.857 7.56 0.00 0.00 4.69
1604 1707 3.800506 ACTTGAGAACTGAAACGTAACGG 59.199 43.478 0.00 0.00 0.00 4.44
1605 1708 5.385396 AACTTGAGAACTGAAACGTAACG 57.615 39.130 0.00 0.00 0.00 3.18
1606 1709 9.712359 ATTAAAACTTGAGAACTGAAACGTAAC 57.288 29.630 0.00 0.00 0.00 2.50
1607 1710 9.925268 GATTAAAACTTGAGAACTGAAACGTAA 57.075 29.630 0.00 0.00 0.00 3.18
1608 1711 9.321562 AGATTAAAACTTGAGAACTGAAACGTA 57.678 29.630 0.00 0.00 0.00 3.57
1791 1900 2.570135 CTAGCTGATCCCCTTCTTTGC 58.430 52.381 0.00 0.00 0.00 3.68
1923 2105 1.071567 GACGCTTGCACGACCTAGTC 61.072 60.000 3.48 0.00 36.70 2.59
1932 2114 2.996621 AGAATAGAACAGACGCTTGCAC 59.003 45.455 0.00 0.00 0.00 4.57
1940 2122 7.101652 TGTCCTCACATAGAATAGAACAGAC 57.898 40.000 0.00 0.00 0.00 3.51
1965 2147 9.262358 GTAAATAAATACCTTCTCGCTCTCATT 57.738 33.333 0.00 0.00 0.00 2.57
1999 2197 2.356069 GCCAGCTGCTAATTCAAGTACC 59.644 50.000 8.66 0.00 36.87 3.34
2009 2207 2.299975 TGGATCTGCCAGCTGCTAA 58.700 52.632 8.66 0.00 43.33 3.09
2065 2294 6.816136 AGTTCTTTAATGGGAAAAGTTGGTG 58.184 36.000 0.00 0.00 35.79 4.17
2066 2295 8.721133 ATAGTTCTTTAATGGGAAAAGTTGGT 57.279 30.769 0.00 0.00 35.79 3.67
2260 2506 5.106157 GCATGCATTCCTGTTGTACTTAAGT 60.106 40.000 14.21 13.68 0.00 2.24
2263 2509 4.588899 AGCATGCATTCCTGTTGTACTTA 58.411 39.130 21.98 0.00 0.00 2.24
2364 2974 5.762179 TGATTTTCATCCACCACTCTACT 57.238 39.130 0.00 0.00 0.00 2.57
2468 3080 1.902508 CGATATACCCATGGCCTCTGT 59.097 52.381 6.09 0.36 0.00 3.41
2521 3133 2.652530 CAGCCAACGCCATGCTTT 59.347 55.556 0.00 0.00 34.57 3.51
2698 3617 9.662947 TCTCAAATGCCTTATATATGTCATCTG 57.337 33.333 0.00 0.00 0.00 2.90
2762 6008 6.680378 GCATCTTTCATACCCAACATTGTACC 60.680 42.308 0.00 0.00 0.00 3.34
2794 6041 9.740710 AACTAAATTTTAGCTACTGTTGGAGAT 57.259 29.630 14.67 0.00 0.00 2.75
2837 6084 2.450476 CCTGGGAGCAAAGTTAAGCAT 58.550 47.619 3.43 0.00 0.00 3.79
2933 6182 4.584325 ACAAAAGCAGCTGGAAGTAATTGA 59.416 37.500 17.12 0.00 35.30 2.57
3163 6441 2.187946 GCCACATCACCTCCTCCG 59.812 66.667 0.00 0.00 0.00 4.63
3208 6495 1.621107 TAGACTTACGAAAAGCGCGG 58.379 50.000 8.83 0.00 46.04 6.46
3210 6497 2.406357 ACGTTAGACTTACGAAAAGCGC 59.594 45.455 19.85 0.00 46.04 5.92
3250 6537 4.273318 AGACTCATGCAACTATTTTCCCC 58.727 43.478 0.00 0.00 0.00 4.81
3786 7119 1.602165 GGATACGGGTGTCATGTAGCG 60.602 57.143 0.00 0.00 0.00 4.26
3847 7182 7.916914 TTTTAGCATGGTAGAAAACTAGGTC 57.083 36.000 5.49 0.00 0.00 3.85
3989 7338 4.057428 GACGTCCCAGAGCGCACT 62.057 66.667 11.47 5.59 0.00 4.40
3993 7342 3.733960 TGACGACGTCCCAGAGCG 61.734 66.667 24.33 0.00 0.00 5.03
4037 7386 2.355132 GTGGCATGCTCAATCTTCTCTG 59.645 50.000 18.92 0.00 0.00 3.35
4052 7401 1.875157 CGACATGATGATCCGTGGCAT 60.875 52.381 0.00 0.00 30.50 4.40
4224 7586 6.723298 TGGAAAAGCAAAATCACTTCCTAA 57.277 33.333 0.00 0.00 34.64 2.69
4227 7589 4.152938 GCATGGAAAAGCAAAATCACTTCC 59.847 41.667 0.00 0.00 34.23 3.46
4240 7602 1.927174 CCGACTACGAGCATGGAAAAG 59.073 52.381 0.00 0.00 42.66 2.27
4313 7675 3.720002 ACCTGTTCAAAAGTCCCCTTAGA 59.280 43.478 0.00 0.00 0.00 2.10
4341 7706 8.939929 TGTTGAAATAGCTACAAGAAAGATCTG 58.060 33.333 0.00 0.00 35.59 2.90
4346 7711 8.044060 TCCATGTTGAAATAGCTACAAGAAAG 57.956 34.615 0.00 0.00 0.00 2.62
4504 7872 9.672086 GTAAACATACTCTAGCTCTGTAATGAG 57.328 37.037 0.00 0.00 37.16 2.90
4541 7909 5.365605 TGTACTACACTATGGAAATGGAGGG 59.634 44.000 0.00 0.00 0.00 4.30
4600 7975 9.722184 AAGTAGTTTTCTCTATAAACTTGGTCC 57.278 33.333 6.33 0.00 41.69 4.46
4663 8038 3.448686 CGTAGGTGCTCCTAATGAGTTG 58.551 50.000 15.95 0.00 46.46 3.16
4714 8090 5.209818 ACGGTTCAGAGAACAATCAACTA 57.790 39.130 11.51 0.00 0.00 2.24
4723 8099 2.260481 GAATCCGACGGTTCAGAGAAC 58.740 52.381 14.79 1.37 0.00 3.01
4727 8103 0.963225 TGTGAATCCGACGGTTCAGA 59.037 50.000 23.38 20.84 35.22 3.27
4737 8113 3.016031 TGGTTCATTGGATGTGAATCCG 58.984 45.455 0.54 0.00 43.62 4.18
4752 8128 7.390440 CAGGACAAATAGTTTCTATGTGGTTCA 59.610 37.037 10.47 0.00 0.00 3.18
4753 8129 7.606456 TCAGGACAAATAGTTTCTATGTGGTTC 59.394 37.037 10.47 2.23 0.00 3.62
4798 8174 7.040409 GCTGGGTATTGAATATAACTGAAAGGG 60.040 40.741 0.00 0.00 39.30 3.95
4811 8187 1.774254 TCGATGGGCTGGGTATTGAAT 59.226 47.619 0.00 0.00 0.00 2.57
4816 8192 0.182775 GGTTTCGATGGGCTGGGTAT 59.817 55.000 0.00 0.00 0.00 2.73
4819 8195 2.440247 GGGTTTCGATGGGCTGGG 60.440 66.667 0.00 0.00 0.00 4.45
4820 8196 1.304052 TTGGGTTTCGATGGGCTGG 60.304 57.895 0.00 0.00 0.00 4.85
4856 8232 4.142708 GGTAACATCAATCATGCGACACAA 60.143 41.667 0.00 0.00 35.65 3.33
4857 8233 3.373748 GGTAACATCAATCATGCGACACA 59.626 43.478 0.00 0.00 35.65 3.72
4904 8280 9.853555 GAGATACCAGTTCTAGTCATTCATATG 57.146 37.037 0.00 0.00 0.00 1.78
4906 8282 7.720074 ACGAGATACCAGTTCTAGTCATTCATA 59.280 37.037 0.00 0.00 0.00 2.15
4907 8283 6.547880 ACGAGATACCAGTTCTAGTCATTCAT 59.452 38.462 0.00 0.00 0.00 2.57
4998 8399 9.878599 GCTTTATAATTATGGTGTATGTGTGTC 57.121 33.333 8.28 0.00 0.00 3.67
5024 8425 7.539034 TTTCCCTTTTCTTTCCTCCATTAAG 57.461 36.000 0.00 0.00 0.00 1.85
5052 8453 5.053145 GCATAATGGTGAGACTAGGTTGAG 58.947 45.833 0.00 0.00 0.00 3.02
5053 8454 4.716784 AGCATAATGGTGAGACTAGGTTGA 59.283 41.667 0.00 0.00 0.00 3.18
5057 8458 4.636249 GGAAGCATAATGGTGAGACTAGG 58.364 47.826 0.00 0.00 0.00 3.02
5065 8466 1.881973 CATCCCGGAAGCATAATGGTG 59.118 52.381 0.73 0.00 0.00 4.17
5077 8478 0.252057 TGGTCTCAGTTCATCCCGGA 60.252 55.000 0.73 0.00 0.00 5.14
5078 8479 0.108138 GTGGTCTCAGTTCATCCCGG 60.108 60.000 0.00 0.00 0.00 5.73
5079 8480 0.458543 CGTGGTCTCAGTTCATCCCG 60.459 60.000 0.00 0.00 0.00 5.14
5080 8481 0.608640 ACGTGGTCTCAGTTCATCCC 59.391 55.000 0.00 0.00 0.00 3.85
5081 8482 2.069273 CAACGTGGTCTCAGTTCATCC 58.931 52.381 0.00 0.00 0.00 3.51
5082 8483 2.069273 CCAACGTGGTCTCAGTTCATC 58.931 52.381 0.00 0.00 31.35 2.92
5083 8484 1.878102 GCCAACGTGGTCTCAGTTCAT 60.878 52.381 0.00 0.00 40.46 2.57
5084 8485 0.531974 GCCAACGTGGTCTCAGTTCA 60.532 55.000 0.00 0.00 40.46 3.18
5085 8486 1.228657 GGCCAACGTGGTCTCAGTTC 61.229 60.000 0.00 0.00 39.55 3.01
5086 8487 1.227853 GGCCAACGTGGTCTCAGTT 60.228 57.895 0.00 0.00 39.55 3.16
5087 8488 2.426023 GGCCAACGTGGTCTCAGT 59.574 61.111 0.00 0.00 39.55 3.41
5092 8493 2.047179 GAGGAGGCCAACGTGGTC 60.047 66.667 5.01 0.00 44.07 4.02
5093 8494 2.526873 AGAGGAGGCCAACGTGGT 60.527 61.111 5.01 0.00 40.46 4.16
5094 8495 2.046892 CAGAGGAGGCCAACGTGG 60.047 66.667 5.01 0.00 41.55 4.94
5095 8496 1.079543 CTCAGAGGAGGCCAACGTG 60.080 63.158 5.01 0.55 37.51 4.49
5096 8497 3.382111 CTCAGAGGAGGCCAACGT 58.618 61.111 5.01 0.00 37.51 3.99
5106 8507 1.327303 CCTCTTCCGATCCTCAGAGG 58.673 60.000 10.70 10.70 45.08 3.69
5107 8508 1.133637 TCCCTCTTCCGATCCTCAGAG 60.134 57.143 0.00 0.00 33.77 3.35
5108 8509 0.927029 TCCCTCTTCCGATCCTCAGA 59.073 55.000 0.00 0.00 0.00 3.27
5109 8510 1.781786 TTCCCTCTTCCGATCCTCAG 58.218 55.000 0.00 0.00 0.00 3.35
5110 8511 2.111384 CTTTCCCTCTTCCGATCCTCA 58.889 52.381 0.00 0.00 0.00 3.86
5111 8512 1.202592 GCTTTCCCTCTTCCGATCCTC 60.203 57.143 0.00 0.00 0.00 3.71
5112 8513 0.833949 GCTTTCCCTCTTCCGATCCT 59.166 55.000 0.00 0.00 0.00 3.24
5113 8514 0.833949 AGCTTTCCCTCTTCCGATCC 59.166 55.000 0.00 0.00 0.00 3.36
5114 8515 2.544069 CGTAGCTTTCCCTCTTCCGATC 60.544 54.545 0.00 0.00 0.00 3.69
5115 8516 1.409427 CGTAGCTTTCCCTCTTCCGAT 59.591 52.381 0.00 0.00 0.00 4.18
5116 8517 0.815734 CGTAGCTTTCCCTCTTCCGA 59.184 55.000 0.00 0.00 0.00 4.55
5117 8518 3.347411 CGTAGCTTTCCCTCTTCCG 57.653 57.895 0.00 0.00 0.00 4.30
5151 8552 1.226888 CGTAGTACCCTCGCCAAGC 60.227 63.158 0.00 0.00 0.00 4.01
5152 8553 1.436336 CCGTAGTACCCTCGCCAAG 59.564 63.158 0.00 0.00 0.00 3.61
5153 8554 2.713967 GCCGTAGTACCCTCGCCAA 61.714 63.158 0.00 0.00 0.00 4.52
5154 8555 3.142838 GCCGTAGTACCCTCGCCA 61.143 66.667 0.00 0.00 0.00 5.69
5155 8556 3.909285 GGCCGTAGTACCCTCGCC 61.909 72.222 0.00 0.00 0.00 5.54
5156 8557 3.909285 GGGCCGTAGTACCCTCGC 61.909 72.222 0.00 0.00 43.36 5.03
5157 8558 3.589881 CGGGCCGTAGTACCCTCG 61.590 72.222 19.97 0.00 44.63 4.63
5158 8559 2.124151 TCGGGCCGTAGTACCCTC 60.124 66.667 27.32 0.00 44.63 4.30
5159 8560 2.440980 GTCGGGCCGTAGTACCCT 60.441 66.667 27.32 0.00 44.63 4.34
5160 8561 3.892581 CGTCGGGCCGTAGTACCC 61.893 72.222 27.32 5.33 43.25 3.69
5161 8562 2.212900 AAACGTCGGGCCGTAGTACC 62.213 60.000 27.32 7.08 40.85 3.34
5162 8563 1.072666 CAAACGTCGGGCCGTAGTAC 61.073 60.000 27.32 15.70 40.85 2.73
5163 8564 1.212490 CAAACGTCGGGCCGTAGTA 59.788 57.895 27.32 2.65 40.85 1.82
5164 8565 2.048877 CAAACGTCGGGCCGTAGT 60.049 61.111 27.32 22.87 40.85 2.73
5165 8566 3.484547 GCAAACGTCGGGCCGTAG 61.485 66.667 27.32 22.19 40.85 3.51
5170 8571 3.497031 GCTAGGCAAACGTCGGGC 61.497 66.667 5.01 5.01 0.00 6.13
5171 8572 2.818274 GGCTAGGCAAACGTCGGG 60.818 66.667 12.16 0.00 0.00 5.14
5172 8573 2.818274 GGGCTAGGCAAACGTCGG 60.818 66.667 19.14 0.00 0.00 4.79
5173 8574 2.818274 GGGGCTAGGCAAACGTCG 60.818 66.667 19.14 0.00 0.00 5.12
5174 8575 1.449778 GAGGGGCTAGGCAAACGTC 60.450 63.158 19.14 8.16 0.00 4.34
5175 8576 2.669240 GAGGGGCTAGGCAAACGT 59.331 61.111 19.14 2.17 0.00 3.99
5176 8577 2.124695 GGAGGGGCTAGGCAAACG 60.125 66.667 19.14 0.00 0.00 3.60
5177 8578 2.124695 CGGAGGGGCTAGGCAAAC 60.125 66.667 19.14 7.66 0.00 2.93
5178 8579 4.109675 GCGGAGGGGCTAGGCAAA 62.110 66.667 19.14 0.00 0.00 3.68
5190 8591 4.548513 AGGGGCTAGGAGGCGGAG 62.549 72.222 0.00 0.00 42.43 4.63
5191 8592 4.541648 GAGGGGCTAGGAGGCGGA 62.542 72.222 0.00 0.00 42.43 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.