Multiple sequence alignment - TraesCS3A01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G141600 chr3A 100.000 3349 0 0 1 3349 121234573 121237921 0.000000e+00 6185.0
1 TraesCS3A01G141600 chr3A 97.858 1587 22 8 805 2385 121317104 121318684 0.000000e+00 2732.0
2 TraesCS3A01G141600 chr3A 97.041 811 23 1 2540 3349 372460717 372461527 0.000000e+00 1363.0
3 TraesCS3A01G141600 chr3A 84.635 1204 146 20 1053 2233 121479401 121480588 0.000000e+00 1162.0
4 TraesCS3A01G141600 chr3A 93.083 506 32 2 1 506 121316275 121316777 0.000000e+00 737.0
5 TraesCS3A01G141600 chr3A 86.000 200 23 3 2021 2216 121482464 121482662 3.390000e-50 209.0
6 TraesCS3A01G141600 chr3A 90.741 108 8 2 2420 2526 121214562 121214668 3.480000e-30 143.0
7 TraesCS3A01G141600 chr3A 92.308 39 3 0 2384 2422 549905613 549905575 4.670000e-04 56.5
8 TraesCS3A01G141600 chr3D 92.419 1728 74 16 708 2385 109271868 109270148 0.000000e+00 2412.0
9 TraesCS3A01G141600 chr3D 83.967 1210 157 22 1053 2233 108954447 108953246 0.000000e+00 1125.0
10 TraesCS3A01G141600 chr3D 89.462 465 32 11 112 563 109273253 109272793 3.750000e-159 571.0
11 TraesCS3A01G141600 chr3D 92.683 41 2 1 2382 2422 170709280 170709241 1.300000e-04 58.4
12 TraesCS3A01G141600 chr3B 92.542 1609 69 14 708 2267 160641362 160639756 0.000000e+00 2259.0
13 TraesCS3A01G141600 chr3B 84.507 1207 151 20 1053 2233 160368133 160366937 0.000000e+00 1160.0
14 TraesCS3A01G141600 chr3B 91.060 604 48 1 2746 3349 478573660 478573063 0.000000e+00 811.0
15 TraesCS3A01G141600 chr3B 90.625 576 38 9 1 563 160642874 160642302 0.000000e+00 750.0
16 TraesCS3A01G141600 chr3B 95.000 40 0 2 661 699 6688686 6688648 1.000000e-05 62.1
17 TraesCS3A01G141600 chr5D 85.978 1248 140 22 988 2205 27540048 27541290 0.000000e+00 1303.0
18 TraesCS3A01G141600 chr5B 90.374 696 60 2 2654 3349 14352163 14351475 0.000000e+00 907.0
19 TraesCS3A01G141600 chr5B 82.632 927 120 24 969 1861 20628697 20627778 0.000000e+00 782.0
20 TraesCS3A01G141600 chr5B 90.113 354 35 0 1858 2211 20627555 20627202 8.470000e-126 460.0
21 TraesCS3A01G141600 chr5B 93.333 45 3 0 661 705 507119330 507119286 2.160000e-07 67.6
22 TraesCS3A01G141600 chr1A 89.112 698 52 11 2676 3349 360039599 360040296 0.000000e+00 846.0
23 TraesCS3A01G141600 chr1A 100.000 31 0 0 2568 2598 47811808 47811778 1.300000e-04 58.4
24 TraesCS3A01G141600 chr5A 82.514 915 108 29 988 1861 18857122 18858025 0.000000e+00 756.0
25 TraesCS3A01G141600 chr5A 90.169 356 35 0 1858 2213 18858241 18858596 6.540000e-127 464.0
26 TraesCS3A01G141600 chr5A 100.000 34 0 0 2567 2600 695743043 695743010 2.790000e-06 63.9
27 TraesCS3A01G141600 chr5A 97.297 37 0 1 2565 2600 607384321 607384357 1.000000e-05 62.1
28 TraesCS3A01G141600 chrUn 82.843 612 86 10 1604 2207 329101082 329100482 6.360000e-147 531.0
29 TraesCS3A01G141600 chrUn 82.843 612 86 10 1604 2207 380933076 380932476 6.360000e-147 531.0
30 TraesCS3A01G141600 chrUn 95.000 40 0 2 661 699 288186894 288186856 1.000000e-05 62.1
31 TraesCS3A01G141600 chr2D 77.533 454 93 9 2691 3140 82566998 82566550 7.120000e-67 265.0
32 TraesCS3A01G141600 chr7B 97.368 38 1 0 2568 2605 726838030 726838067 7.760000e-07 65.8
33 TraesCS3A01G141600 chr7B 96.970 33 1 0 2381 2413 222298355 222298387 4.670000e-04 56.5
34 TraesCS3A01G141600 chr7D 94.872 39 2 0 661 699 113720657 113720619 1.000000e-05 62.1
35 TraesCS3A01G141600 chr7D 100.000 29 0 0 2384 2412 164757250 164757222 2.000000e-03 54.7
36 TraesCS3A01G141600 chr4A 92.683 41 3 0 659 699 742326819 742326859 3.610000e-05 60.2
37 TraesCS3A01G141600 chr2B 94.737 38 2 0 661 698 774662005 774662042 3.610000e-05 60.2
38 TraesCS3A01G141600 chr2B 96.875 32 1 0 2382 2413 785862848 785862879 2.000000e-03 54.7
39 TraesCS3A01G141600 chr2A 100.000 32 0 0 668 699 71436632 71436663 3.610000e-05 60.2
40 TraesCS3A01G141600 chr2A 94.737 38 2 0 661 698 172214387 172214350 3.610000e-05 60.2
41 TraesCS3A01G141600 chr1B 94.737 38 2 0 661 698 546953999 546954036 3.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G141600 chr3A 121234573 121237921 3348 False 6185.0 6185 100.0000 1 3349 1 chr3A.!!$F2 3348
1 TraesCS3A01G141600 chr3A 121316275 121318684 2409 False 1734.5 2732 95.4705 1 2385 2 chr3A.!!$F4 2384
2 TraesCS3A01G141600 chr3A 372460717 372461527 810 False 1363.0 1363 97.0410 2540 3349 1 chr3A.!!$F3 809
3 TraesCS3A01G141600 chr3A 121479401 121482662 3261 False 685.5 1162 85.3175 1053 2233 2 chr3A.!!$F5 1180
4 TraesCS3A01G141600 chr3D 109270148 109273253 3105 True 1491.5 2412 90.9405 112 2385 2 chr3D.!!$R3 2273
5 TraesCS3A01G141600 chr3D 108953246 108954447 1201 True 1125.0 1125 83.9670 1053 2233 1 chr3D.!!$R1 1180
6 TraesCS3A01G141600 chr3B 160639756 160642874 3118 True 1504.5 2259 91.5835 1 2267 2 chr3B.!!$R4 2266
7 TraesCS3A01G141600 chr3B 160366937 160368133 1196 True 1160.0 1160 84.5070 1053 2233 1 chr3B.!!$R2 1180
8 TraesCS3A01G141600 chr3B 478573063 478573660 597 True 811.0 811 91.0600 2746 3349 1 chr3B.!!$R3 603
9 TraesCS3A01G141600 chr5D 27540048 27541290 1242 False 1303.0 1303 85.9780 988 2205 1 chr5D.!!$F1 1217
10 TraesCS3A01G141600 chr5B 14351475 14352163 688 True 907.0 907 90.3740 2654 3349 1 chr5B.!!$R1 695
11 TraesCS3A01G141600 chr5B 20627202 20628697 1495 True 621.0 782 86.3725 969 2211 2 chr5B.!!$R3 1242
12 TraesCS3A01G141600 chr1A 360039599 360040296 697 False 846.0 846 89.1120 2676 3349 1 chr1A.!!$F1 673
13 TraesCS3A01G141600 chr5A 18857122 18858596 1474 False 610.0 756 86.3415 988 2213 2 chr5A.!!$F2 1225
14 TraesCS3A01G141600 chrUn 329100482 329101082 600 True 531.0 531 82.8430 1604 2207 1 chrUn.!!$R2 603
15 TraesCS3A01G141600 chrUn 380932476 380933076 600 True 531.0 531 82.8430 1604 2207 1 chrUn.!!$R3 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 381 0.172803 GCACGAATCAGTAGTCCCGT 59.827 55.0 0.0 0.0 0.0 5.28 F
1671 2779 0.036388 GAACAAGATCAGGACCGGCA 60.036 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 3780 0.59411 TTTAAAAAGCTCCACCGGCG 59.406 50.0 0.0 0.0 34.52 6.46 R
2527 4130 0.03438 TAGGCGTGTGCTCTCCTAGT 60.034 55.0 0.0 0.0 42.25 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.067461 TGGTGAAAGGGTTCAAACGATTG 59.933 43.478 0.00 0.00 45.29 2.67
45 46 3.197766 TGGACCAAATCTCGCACTATCTT 59.802 43.478 0.00 0.00 0.00 2.40
130 131 4.918588 ACATAGTCCCCCTACTGTTTTTG 58.081 43.478 0.00 0.00 0.00 2.44
158 159 6.969473 GTCACTTTTTCCTCAAGAAAGAACAG 59.031 38.462 2.45 0.00 45.11 3.16
190 192 7.543868 AGCAATCACTAGCATATTCGATAACTC 59.456 37.037 0.00 0.00 0.00 3.01
273 280 2.234300 TTGGTCTTGTCGTGTCTTCC 57.766 50.000 0.00 0.00 0.00 3.46
327 334 7.261325 ACTACTATCGAACGTCAGAGTTAGTA 58.739 38.462 0.00 1.64 34.00 1.82
328 335 6.586868 ACTATCGAACGTCAGAGTTAGTAG 57.413 41.667 0.00 0.00 34.00 2.57
329 336 6.105333 ACTATCGAACGTCAGAGTTAGTAGT 58.895 40.000 0.00 0.00 34.00 2.73
335 342 6.565435 CGAACGTCAGAGTTAGTAGTTGAGAA 60.565 42.308 0.00 0.00 34.00 2.87
373 380 0.456221 AGCACGAATCAGTAGTCCCG 59.544 55.000 0.00 0.00 0.00 5.14
374 381 0.172803 GCACGAATCAGTAGTCCCGT 59.827 55.000 0.00 0.00 0.00 5.28
401 408 3.380320 ACAAAGTACCCAGAAAAGCACAC 59.620 43.478 0.00 0.00 0.00 3.82
506 552 8.561738 TTCTTAGAATAGGCGAAAACTGAAAT 57.438 30.769 0.00 0.00 0.00 2.17
612 689 7.526608 TCCTTTAATGCAAGACGTTTCTTATG 58.473 34.615 0.00 0.00 40.34 1.90
618 695 6.176975 TGCAAGACGTTTCTTATGTTATGG 57.823 37.500 0.00 0.00 40.34 2.74
640 717 4.384208 GGGACAGAGGTAGCATATGTTTGT 60.384 45.833 4.29 0.00 0.00 2.83
644 721 6.106673 ACAGAGGTAGCATATGTTTGTGTAC 58.893 40.000 4.29 0.00 0.00 2.90
645 722 6.070767 ACAGAGGTAGCATATGTTTGTGTACT 60.071 38.462 4.29 0.00 0.00 2.73
651 728 6.537453 AGCATATGTTTGTGTACTCTCTCT 57.463 37.500 4.29 0.00 0.00 3.10
653 730 5.751028 GCATATGTTTGTGTACTCTCTCTCC 59.249 44.000 4.29 0.00 0.00 3.71
659 736 6.183360 TGTTTGTGTACTCTCTCTCCGTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
665 742 6.602009 TGTACTCTCTCTCCGTAAAATGATCA 59.398 38.462 0.00 0.00 0.00 2.92
666 743 6.142818 ACTCTCTCTCCGTAAAATGATCAG 57.857 41.667 0.09 0.00 0.00 2.90
668 745 6.378564 ACTCTCTCTCCGTAAAATGATCAGAA 59.621 38.462 0.09 0.00 0.00 3.02
670 747 5.340803 TCTCTCCGTAAAATGATCAGAACG 58.659 41.667 0.09 8.09 0.00 3.95
671 748 3.863424 TCTCCGTAAAATGATCAGAACGC 59.137 43.478 0.09 0.00 0.00 4.84
692 774 9.704098 GAACGCTTTTATATTTCTTTACAGAGG 57.296 33.333 0.00 0.00 0.00 3.69
693 775 9.444600 AACGCTTTTATATTTCTTTACAGAGGA 57.555 29.630 0.00 0.00 0.00 3.71
717 799 7.201470 GGAAGTACGTAATAAACTTAGTGCCAC 60.201 40.741 0.00 0.00 33.04 5.01
763 1759 4.045636 ACATTTTGCTTGTTCAGTGGAC 57.954 40.909 0.00 0.00 0.00 4.02
778 1774 4.688879 TCAGTGGACACGAATCATAACAAC 59.311 41.667 0.00 0.00 36.20 3.32
788 1784 7.011389 ACACGAATCATAACAACACATAGGATG 59.989 37.037 0.00 0.00 0.00 3.51
789 1785 7.224557 CACGAATCATAACAACACATAGGATGA 59.775 37.037 0.00 0.00 0.00 2.92
798 1794 7.502120 ACAACACATAGGATGAGATAATTGC 57.498 36.000 0.00 0.00 0.00 3.56
815 1813 3.658757 TTGCACATGTAAAGCCTTTCC 57.341 42.857 0.00 0.00 0.00 3.13
816 1814 1.892474 TGCACATGTAAAGCCTTTCCC 59.108 47.619 0.00 0.00 0.00 3.97
817 1815 1.892474 GCACATGTAAAGCCTTTCCCA 59.108 47.619 0.00 0.00 0.00 4.37
818 1816 2.497273 GCACATGTAAAGCCTTTCCCAT 59.503 45.455 0.00 0.00 0.00 4.00
819 1817 3.429410 GCACATGTAAAGCCTTTCCCATC 60.429 47.826 0.00 0.00 0.00 3.51
820 1818 3.763360 CACATGTAAAGCCTTTCCCATCA 59.237 43.478 0.00 0.00 0.00 3.07
822 1820 5.025453 ACATGTAAAGCCTTTCCCATCATT 58.975 37.500 0.00 0.00 0.00 2.57
823 1821 6.096705 CACATGTAAAGCCTTTCCCATCATTA 59.903 38.462 0.00 0.00 0.00 1.90
825 1823 4.953579 TGTAAAGCCTTTCCCATCATTACC 59.046 41.667 0.00 0.00 0.00 2.85
826 1824 2.755952 AGCCTTTCCCATCATTACCC 57.244 50.000 0.00 0.00 0.00 3.69
827 1825 2.217776 AGCCTTTCCCATCATTACCCT 58.782 47.619 0.00 0.00 0.00 4.34
828 1826 3.403322 AGCCTTTCCCATCATTACCCTA 58.597 45.455 0.00 0.00 0.00 3.53
829 1827 3.138468 AGCCTTTCCCATCATTACCCTAC 59.862 47.826 0.00 0.00 0.00 3.18
1520 2570 1.578206 GCGTCAAGTTTCAGGGCTCC 61.578 60.000 0.00 0.00 0.00 4.70
1671 2779 0.036388 GAACAAGATCAGGACCGGCA 60.036 55.000 0.00 0.00 0.00 5.69
1856 2964 0.463654 ACAAGCTGCTGTTCGACCAA 60.464 50.000 1.35 0.00 0.00 3.67
2289 3890 0.240145 GCATCGATCGTACGGATGGA 59.760 55.000 24.70 18.61 42.95 3.41
2397 4000 4.701651 AAATTAATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
2398 4001 3.632420 ATTAATACTCCCTCCGTCCCT 57.368 47.619 0.00 0.00 0.00 4.20
2399 4002 4.754411 ATTAATACTCCCTCCGTCCCTA 57.246 45.455 0.00 0.00 0.00 3.53
2400 4003 4.541250 TTAATACTCCCTCCGTCCCTAA 57.459 45.455 0.00 0.00 0.00 2.69
2401 4004 3.409804 AATACTCCCTCCGTCCCTAAA 57.590 47.619 0.00 0.00 0.00 1.85
2402 4005 3.632420 ATACTCCCTCCGTCCCTAAAT 57.368 47.619 0.00 0.00 0.00 1.40
2403 4006 4.754411 ATACTCCCTCCGTCCCTAAATA 57.246 45.455 0.00 0.00 0.00 1.40
2404 4007 3.632420 ACTCCCTCCGTCCCTAAATAT 57.368 47.619 0.00 0.00 0.00 1.28
2405 4008 4.754411 ACTCCCTCCGTCCCTAAATATA 57.246 45.455 0.00 0.00 0.00 0.86
2406 4009 5.083953 ACTCCCTCCGTCCCTAAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
2407 4010 5.085219 ACTCCCTCCGTCCCTAAATATAAG 58.915 45.833 0.00 0.00 0.00 1.73
2408 4011 5.083953 TCCCTCCGTCCCTAAATATAAGT 57.916 43.478 0.00 0.00 0.00 2.24
2409 4012 5.470501 TCCCTCCGTCCCTAAATATAAGTT 58.529 41.667 0.00 0.00 0.00 2.66
2410 4013 5.907079 TCCCTCCGTCCCTAAATATAAGTTT 59.093 40.000 0.00 0.00 0.00 2.66
2411 4014 6.387807 TCCCTCCGTCCCTAAATATAAGTTTT 59.612 38.462 0.00 0.00 0.00 2.43
2412 4015 7.058525 CCCTCCGTCCCTAAATATAAGTTTTT 58.941 38.462 0.00 0.00 0.00 1.94
2442 4045 9.623000 AGAGATACTAAAAAGTCTCTCTACCTC 57.377 37.037 17.11 0.00 44.87 3.85
2443 4046 8.441312 AGATACTAAAAAGTCTCTCTACCTCG 57.559 38.462 0.00 0.00 0.00 4.63
2444 4047 8.266473 AGATACTAAAAAGTCTCTCTACCTCGA 58.734 37.037 0.00 0.00 0.00 4.04
2445 4048 6.499234 ACTAAAAAGTCTCTCTACCTCGAC 57.501 41.667 0.00 0.00 0.00 4.20
2446 4049 6.240145 ACTAAAAAGTCTCTCTACCTCGACT 58.760 40.000 0.00 0.00 38.29 4.18
2447 4050 6.716173 ACTAAAAAGTCTCTCTACCTCGACTT 59.284 38.462 0.00 0.00 45.64 3.01
2450 4053 4.289238 AGTCTCTCTACCTCGACTTTGA 57.711 45.455 0.00 0.00 33.21 2.69
2451 4054 4.653868 AGTCTCTCTACCTCGACTTTGAA 58.346 43.478 0.00 0.00 33.21 2.69
2452 4055 5.071370 AGTCTCTCTACCTCGACTTTGAAA 58.929 41.667 0.00 0.00 33.21 2.69
2453 4056 5.712917 AGTCTCTCTACCTCGACTTTGAAAT 59.287 40.000 0.00 0.00 33.21 2.17
2454 4057 6.209788 AGTCTCTCTACCTCGACTTTGAAATT 59.790 38.462 0.00 0.00 33.21 1.82
2455 4058 6.528774 GTCTCTCTACCTCGACTTTGAAATTC 59.471 42.308 0.00 0.00 0.00 2.17
2456 4059 6.208797 TCTCTCTACCTCGACTTTGAAATTCA 59.791 38.462 0.00 0.00 0.00 2.57
2457 4060 6.936279 TCTCTACCTCGACTTTGAAATTCAT 58.064 36.000 0.00 0.00 0.00 2.57
2458 4061 8.063200 TCTCTACCTCGACTTTGAAATTCATA 57.937 34.615 0.00 0.00 0.00 2.15
2459 4062 7.974501 TCTCTACCTCGACTTTGAAATTCATAC 59.025 37.037 0.00 0.00 0.00 2.39
2460 4063 7.608153 TCTACCTCGACTTTGAAATTCATACA 58.392 34.615 0.00 0.00 0.00 2.29
2461 4064 8.092068 TCTACCTCGACTTTGAAATTCATACAA 58.908 33.333 0.00 0.00 0.00 2.41
2462 4065 7.133891 ACCTCGACTTTGAAATTCATACAAG 57.866 36.000 0.00 0.42 0.00 3.16
2463 4066 6.934645 ACCTCGACTTTGAAATTCATACAAGA 59.065 34.615 11.53 2.95 0.00 3.02
2464 4067 7.444183 ACCTCGACTTTGAAATTCATACAAGAA 59.556 33.333 11.53 0.00 0.00 2.52
2465 4068 8.454106 CCTCGACTTTGAAATTCATACAAGAAT 58.546 33.333 11.53 0.00 39.81 2.40
2480 4083 9.672086 TCATACAAGAATAACGAAAAACCTTTG 57.328 29.630 0.00 0.00 0.00 2.77
2481 4084 8.911662 CATACAAGAATAACGAAAAACCTTTGG 58.088 33.333 0.00 0.00 0.00 3.28
2482 4085 6.869695 ACAAGAATAACGAAAAACCTTTGGT 58.130 32.000 0.00 0.00 35.25 3.67
2483 4086 6.754675 ACAAGAATAACGAAAAACCTTTGGTG 59.245 34.615 0.00 0.00 35.34 4.17
2484 4087 6.459670 AGAATAACGAAAAACCTTTGGTGT 57.540 33.333 0.00 0.00 35.34 4.16
2485 4088 6.270064 AGAATAACGAAAAACCTTTGGTGTG 58.730 36.000 0.00 0.00 35.34 3.82
2486 4089 2.951457 ACGAAAAACCTTTGGTGTGG 57.049 45.000 0.00 0.00 35.34 4.17
2487 4090 1.134936 ACGAAAAACCTTTGGTGTGGC 60.135 47.619 0.00 0.00 35.34 5.01
2488 4091 1.804746 CGAAAAACCTTTGGTGTGGCC 60.805 52.381 0.00 0.00 35.34 5.36
2489 4092 0.176910 AAAAACCTTTGGTGTGGCCG 59.823 50.000 0.00 0.00 41.21 6.13
2490 4093 2.304901 AAAACCTTTGGTGTGGCCGC 62.305 55.000 10.11 10.11 41.21 6.53
2491 4094 4.514585 ACCTTTGGTGTGGCCGCA 62.515 61.111 16.89 16.89 41.21 5.69
2492 4095 2.990967 CCTTTGGTGTGGCCGCAT 60.991 61.111 24.28 0.00 41.21 4.73
2493 4096 2.568090 CTTTGGTGTGGCCGCATC 59.432 61.111 24.28 23.67 41.21 3.91
2494 4097 2.988684 TTTGGTGTGGCCGCATCC 60.989 61.111 26.46 24.60 41.21 3.51
2495 4098 3.799286 TTTGGTGTGGCCGCATCCA 62.799 57.895 26.46 26.64 41.21 3.41
2496 4099 3.582242 TTGGTGTGGCCGCATCCAT 62.582 57.895 29.25 0.00 41.21 3.41
2497 4100 3.520862 GGTGTGGCCGCATCCATG 61.521 66.667 24.28 0.00 38.57 3.66
2498 4101 3.520862 GTGTGGCCGCATCCATGG 61.521 66.667 24.28 4.97 38.57 3.66
2506 4109 3.425422 GCATCCATGGCGAACCTC 58.575 61.111 6.96 0.00 36.63 3.85
2507 4110 1.153086 GCATCCATGGCGAACCTCT 60.153 57.895 6.96 0.00 36.63 3.69
2508 4111 0.106708 GCATCCATGGCGAACCTCTA 59.893 55.000 6.96 0.00 36.63 2.43
2509 4112 1.475034 GCATCCATGGCGAACCTCTAA 60.475 52.381 6.96 0.00 36.63 2.10
2510 4113 2.811873 GCATCCATGGCGAACCTCTAAT 60.812 50.000 6.96 0.00 36.63 1.73
2511 4114 3.480470 CATCCATGGCGAACCTCTAATT 58.520 45.455 6.96 0.00 36.63 1.40
2512 4115 4.641396 CATCCATGGCGAACCTCTAATTA 58.359 43.478 6.96 0.00 36.63 1.40
2513 4116 4.067972 TCCATGGCGAACCTCTAATTAC 57.932 45.455 6.96 0.00 36.63 1.89
2514 4117 3.139077 CCATGGCGAACCTCTAATTACC 58.861 50.000 0.00 0.00 36.63 2.85
2515 4118 3.433031 CCATGGCGAACCTCTAATTACCA 60.433 47.826 0.00 0.00 36.63 3.25
2516 4119 4.389374 CATGGCGAACCTCTAATTACCAT 58.611 43.478 0.00 0.00 37.13 3.55
2517 4120 3.804036 TGGCGAACCTCTAATTACCATG 58.196 45.455 0.00 0.00 36.63 3.66
2518 4121 3.452990 TGGCGAACCTCTAATTACCATGA 59.547 43.478 0.00 0.00 36.63 3.07
2519 4122 4.102524 TGGCGAACCTCTAATTACCATGAT 59.897 41.667 0.00 0.00 36.63 2.45
2520 4123 4.452455 GGCGAACCTCTAATTACCATGATG 59.548 45.833 0.00 0.00 0.00 3.07
2521 4124 5.297547 GCGAACCTCTAATTACCATGATGA 58.702 41.667 0.00 0.00 0.00 2.92
2522 4125 5.406780 GCGAACCTCTAATTACCATGATGAG 59.593 44.000 0.00 0.00 0.00 2.90
2523 4126 6.738731 GCGAACCTCTAATTACCATGATGAGA 60.739 42.308 0.00 0.00 0.00 3.27
2524 4127 7.210174 CGAACCTCTAATTACCATGATGAGAA 58.790 38.462 0.00 0.00 0.00 2.87
2525 4128 7.169982 CGAACCTCTAATTACCATGATGAGAAC 59.830 40.741 0.00 0.00 0.00 3.01
2526 4129 7.437713 ACCTCTAATTACCATGATGAGAACA 57.562 36.000 0.00 0.00 0.00 3.18
2527 4130 7.861629 ACCTCTAATTACCATGATGAGAACAA 58.138 34.615 0.00 0.00 0.00 2.83
2528 4131 7.770897 ACCTCTAATTACCATGATGAGAACAAC 59.229 37.037 0.00 0.00 0.00 3.32
2529 4132 7.989741 CCTCTAATTACCATGATGAGAACAACT 59.010 37.037 0.00 0.00 0.00 3.16
2532 4135 9.265901 CTAATTACCATGATGAGAACAACTAGG 57.734 37.037 0.00 0.00 0.00 3.02
2533 4136 6.867519 TTACCATGATGAGAACAACTAGGA 57.132 37.500 0.00 0.00 0.00 2.94
2534 4137 5.350504 ACCATGATGAGAACAACTAGGAG 57.649 43.478 0.00 0.00 0.00 3.69
2535 4138 5.026121 ACCATGATGAGAACAACTAGGAGA 58.974 41.667 0.00 0.00 0.00 3.71
2536 4139 5.128499 ACCATGATGAGAACAACTAGGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2537 4140 4.727507 TGATGAGAACAACTAGGAGAGC 57.272 45.455 0.00 0.00 0.00 4.09
2538 4141 4.089361 TGATGAGAACAACTAGGAGAGCA 58.911 43.478 0.00 0.00 0.00 4.26
2639 4243 2.919856 ACGCTGTGGCCACTCTCT 60.920 61.111 34.75 13.56 34.44 3.10
2647 4251 1.066303 GTGGCCACTCTCTCATAGTCG 59.934 57.143 29.12 0.00 0.00 4.18
2651 4255 1.268285 CCACTCTCTCATAGTCGTGCG 60.268 57.143 0.00 0.00 0.00 5.34
2865 4469 4.098044 CGTAAGCACCATTCTTCTCTCCTA 59.902 45.833 0.00 0.00 0.00 2.94
2935 5611 5.130350 TGGTCTTTCAAATTTTCGGTCTCT 58.870 37.500 0.00 0.00 0.00 3.10
3309 6559 0.391130 TGCGTTCGCTGCCTCTTAAT 60.391 50.000 17.63 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.121221 AGATTTGGTCCAATCGTTTGAAC 57.879 39.130 4.80 0.00 34.60 3.18
24 25 3.460857 AGATAGTGCGAGATTTGGTCC 57.539 47.619 0.00 0.00 0.00 4.46
109 110 4.918588 ACAAAAACAGTAGGGGGACTATG 58.081 43.478 0.00 0.00 33.43 2.23
130 131 7.787725 TCTTTCTTGAGGAAAAAGTGACTAC 57.212 36.000 0.00 0.00 42.52 2.73
158 159 0.175760 TGCTAGTGATTGCTCGTCCC 59.824 55.000 0.00 0.00 0.00 4.46
190 192 8.433421 TTTCCGTTTAGATTATGCCTCTTTAG 57.567 34.615 0.00 0.00 0.00 1.85
273 280 7.908193 ATAAGTAAAGTTGTTGTGCTTTTCG 57.092 32.000 0.00 0.00 36.47 3.46
301 308 5.467902 AACTCTGACGTTCGATAGTAGTC 57.532 43.478 0.00 0.00 36.18 2.59
327 334 7.930865 GCCTCTCATAAATATCTGTTCTCAACT 59.069 37.037 0.00 0.00 0.00 3.16
328 335 7.712639 TGCCTCTCATAAATATCTGTTCTCAAC 59.287 37.037 0.00 0.00 0.00 3.18
329 336 7.795047 TGCCTCTCATAAATATCTGTTCTCAA 58.205 34.615 0.00 0.00 0.00 3.02
335 342 5.303971 GTGCTGCCTCTCATAAATATCTGT 58.696 41.667 0.00 0.00 0.00 3.41
351 358 1.281899 GACTACTGATTCGTGCTGCC 58.718 55.000 0.00 0.00 0.00 4.85
373 380 6.016610 TGCTTTTCTGGGTACTTTGTCATTAC 60.017 38.462 0.00 0.00 0.00 1.89
374 381 6.016610 GTGCTTTTCTGGGTACTTTGTCATTA 60.017 38.462 0.00 0.00 0.00 1.90
502 548 7.865706 ACTATGTTGGGATAGTGAACATTTC 57.134 36.000 0.00 0.00 40.12 2.17
506 552 7.458397 AGAAAACTATGTTGGGATAGTGAACA 58.542 34.615 0.00 0.00 38.82 3.18
578 636 8.237267 ACGTCTTGCATTAAAGGATAAAAAGAG 58.763 33.333 0.00 0.00 0.00 2.85
579 637 8.106247 ACGTCTTGCATTAAAGGATAAAAAGA 57.894 30.769 0.00 0.00 0.00 2.52
580 638 8.742554 AACGTCTTGCATTAAAGGATAAAAAG 57.257 30.769 0.00 0.00 0.00 2.27
581 639 9.187455 GAAACGTCTTGCATTAAAGGATAAAAA 57.813 29.630 0.00 0.00 0.00 1.94
583 641 8.106247 AGAAACGTCTTGCATTAAAGGATAAA 57.894 30.769 0.00 0.00 0.00 1.40
588 646 7.305474 ACATAAGAAACGTCTTGCATTAAAGG 58.695 34.615 0.00 0.00 44.12 3.11
591 649 9.767684 CATAACATAAGAAACGTCTTGCATTAA 57.232 29.630 0.00 0.00 44.12 1.40
592 650 8.394877 CCATAACATAAGAAACGTCTTGCATTA 58.605 33.333 0.00 0.00 44.12 1.90
593 651 7.250569 CCATAACATAAGAAACGTCTTGCATT 58.749 34.615 0.00 0.00 44.12 3.56
594 652 6.183360 CCCATAACATAAGAAACGTCTTGCAT 60.183 38.462 0.00 0.00 44.12 3.96
596 654 5.353123 TCCCATAACATAAGAAACGTCTTGC 59.647 40.000 0.00 0.00 44.12 4.01
612 689 5.012148 ACATATGCTACCTCTGTCCCATAAC 59.988 44.000 1.58 0.00 0.00 1.89
618 695 4.572389 CACAAACATATGCTACCTCTGTCC 59.428 45.833 1.58 0.00 0.00 4.02
626 703 7.484975 AGAGAGAGTACACAAACATATGCTAC 58.515 38.462 1.58 0.00 0.00 3.58
630 707 5.974158 CGGAGAGAGAGTACACAAACATATG 59.026 44.000 0.00 0.00 0.00 1.78
632 709 5.008331 ACGGAGAGAGAGTACACAAACATA 58.992 41.667 0.00 0.00 0.00 2.29
640 717 6.602009 TGATCATTTTACGGAGAGAGAGTACA 59.398 38.462 0.00 0.00 0.00 2.90
644 721 6.384258 TCTGATCATTTTACGGAGAGAGAG 57.616 41.667 0.00 0.00 0.00 3.20
645 722 6.565234 GTTCTGATCATTTTACGGAGAGAGA 58.435 40.000 0.00 0.00 0.00 3.10
651 728 3.857052 AGCGTTCTGATCATTTTACGGA 58.143 40.909 15.86 0.00 0.00 4.69
653 730 9.864034 ATATAAAAGCGTTCTGATCATTTTACG 57.136 29.630 10.37 11.25 0.00 3.18
666 743 9.704098 CCTCTGTAAAGAAATATAAAAGCGTTC 57.296 33.333 0.00 0.00 0.00 3.95
668 745 9.444600 TTCCTCTGTAAAGAAATATAAAAGCGT 57.555 29.630 0.00 0.00 0.00 5.07
682 764 9.852091 AGTTTATTACGTACTTCCTCTGTAAAG 57.148 33.333 0.00 0.00 0.00 1.85
692 774 7.461938 CGTGGCACTAAGTTTATTACGTACTTC 60.462 40.741 16.72 0.00 34.26 3.01
693 775 6.308766 CGTGGCACTAAGTTTATTACGTACTT 59.691 38.462 16.72 5.99 36.23 2.24
763 1759 6.902224 TCCTATGTGTTGTTATGATTCGTG 57.098 37.500 0.00 0.00 0.00 4.35
778 1774 7.174426 ACATGTGCAATTATCTCATCCTATGTG 59.826 37.037 0.00 0.00 0.00 3.21
788 1784 6.382869 AGGCTTTACATGTGCAATTATCTC 57.617 37.500 9.11 0.00 0.00 2.75
789 1785 6.780457 AAGGCTTTACATGTGCAATTATCT 57.220 33.333 9.11 0.00 0.00 1.98
793 1789 4.563374 GGGAAAGGCTTTACATGTGCAATT 60.563 41.667 23.06 2.46 0.00 2.32
796 1792 1.892474 GGGAAAGGCTTTACATGTGCA 59.108 47.619 23.06 0.00 0.00 4.57
797 1793 1.892474 TGGGAAAGGCTTTACATGTGC 59.108 47.619 23.06 6.50 0.00 4.57
798 1794 3.763360 TGATGGGAAAGGCTTTACATGTG 59.237 43.478 25.31 0.00 0.00 3.21
823 1821 9.719355 GATGGTTCAATTTTATTTTTGTAGGGT 57.281 29.630 0.00 0.00 0.00 4.34
825 1823 9.942850 AGGATGGTTCAATTTTATTTTTGTAGG 57.057 29.630 0.00 0.00 0.00 3.18
828 1826 9.719355 GGTAGGATGGTTCAATTTTATTTTTGT 57.281 29.630 0.00 0.00 0.00 2.83
829 1827 9.717942 TGGTAGGATGGTTCAATTTTATTTTTG 57.282 29.630 0.00 0.00 0.00 2.44
1520 2570 2.964740 TGCTAGCTTGACTTACAGCAG 58.035 47.619 17.23 0.00 0.00 4.24
1671 2779 1.079819 CCGACAGCGACACCAGATT 60.080 57.895 0.00 0.00 40.82 2.40
2217 3780 0.594110 TTTAAAAAGCTCCACCGGCG 59.406 50.000 0.00 0.00 34.52 6.46
2229 3792 2.545148 CGCGCACGCAAATTTAAAAA 57.455 40.000 16.04 0.00 42.06 1.94
2289 3890 1.347707 ACACAACCACCGATCACTCAT 59.652 47.619 0.00 0.00 0.00 2.90
2379 3982 4.541250 TTAGGGACGGAGGGAGTATTAA 57.459 45.455 0.00 0.00 0.00 1.40
2381 3984 3.409804 TTTAGGGACGGAGGGAGTATT 57.590 47.619 0.00 0.00 0.00 1.89
2383 3986 4.754411 ATATTTAGGGACGGAGGGAGTA 57.246 45.455 0.00 0.00 0.00 2.59
2385 3988 5.085219 ACTTATATTTAGGGACGGAGGGAG 58.915 45.833 0.00 0.00 0.00 4.30
2386 3989 5.083953 ACTTATATTTAGGGACGGAGGGA 57.916 43.478 0.00 0.00 0.00 4.20
2418 4021 8.266473 TCGAGGTAGAGAGACTTTTTAGTATCT 58.734 37.037 2.37 2.37 42.29 1.98
2419 4022 8.337532 GTCGAGGTAGAGAGACTTTTTAGTATC 58.662 40.741 0.00 0.00 0.00 2.24
2420 4023 8.048514 AGTCGAGGTAGAGAGACTTTTTAGTAT 58.951 37.037 0.00 0.00 40.64 2.12
2421 4024 7.393216 AGTCGAGGTAGAGAGACTTTTTAGTA 58.607 38.462 0.00 0.00 40.64 1.82
2422 4025 6.240145 AGTCGAGGTAGAGAGACTTTTTAGT 58.760 40.000 0.00 0.00 40.64 2.24
2423 4026 6.746745 AGTCGAGGTAGAGAGACTTTTTAG 57.253 41.667 0.00 0.00 40.64 1.85
2429 4032 4.289238 TCAAAGTCGAGGTAGAGAGACT 57.711 45.455 0.00 0.00 44.81 3.24
2430 4033 5.373981 TTTCAAAGTCGAGGTAGAGAGAC 57.626 43.478 0.00 0.00 0.00 3.36
2431 4034 6.208797 TGAATTTCAAAGTCGAGGTAGAGAGA 59.791 38.462 0.00 0.00 0.00 3.10
2432 4035 6.390721 TGAATTTCAAAGTCGAGGTAGAGAG 58.609 40.000 0.00 0.00 0.00 3.20
2433 4036 6.340962 TGAATTTCAAAGTCGAGGTAGAGA 57.659 37.500 0.00 0.00 0.00 3.10
2434 4037 7.759886 TGTATGAATTTCAAAGTCGAGGTAGAG 59.240 37.037 2.68 0.00 0.00 2.43
2435 4038 7.608153 TGTATGAATTTCAAAGTCGAGGTAGA 58.392 34.615 2.68 0.00 0.00 2.59
2436 4039 7.827819 TGTATGAATTTCAAAGTCGAGGTAG 57.172 36.000 2.68 0.00 0.00 3.18
2437 4040 8.092068 TCTTGTATGAATTTCAAAGTCGAGGTA 58.908 33.333 2.68 0.00 0.00 3.08
2438 4041 6.934645 TCTTGTATGAATTTCAAAGTCGAGGT 59.065 34.615 2.68 0.00 0.00 3.85
2439 4042 7.364522 TCTTGTATGAATTTCAAAGTCGAGG 57.635 36.000 2.68 0.00 0.00 4.63
2454 4057 9.672086 CAAAGGTTTTTCGTTATTCTTGTATGA 57.328 29.630 0.00 0.00 0.00 2.15
2455 4058 8.911662 CCAAAGGTTTTTCGTTATTCTTGTATG 58.088 33.333 0.00 0.00 0.00 2.39
2456 4059 8.635328 ACCAAAGGTTTTTCGTTATTCTTGTAT 58.365 29.630 0.00 0.00 27.29 2.29
2457 4060 7.916450 CACCAAAGGTTTTTCGTTATTCTTGTA 59.084 33.333 0.00 0.00 31.02 2.41
2458 4061 6.754675 CACCAAAGGTTTTTCGTTATTCTTGT 59.245 34.615 0.00 0.00 31.02 3.16
2459 4062 6.754675 ACACCAAAGGTTTTTCGTTATTCTTG 59.245 34.615 0.00 0.00 31.02 3.02
2460 4063 6.754675 CACACCAAAGGTTTTTCGTTATTCTT 59.245 34.615 0.00 0.00 31.02 2.52
2461 4064 6.270064 CACACCAAAGGTTTTTCGTTATTCT 58.730 36.000 0.00 0.00 31.02 2.40
2462 4065 5.460748 CCACACCAAAGGTTTTTCGTTATTC 59.539 40.000 0.00 0.00 31.02 1.75
2463 4066 5.353111 CCACACCAAAGGTTTTTCGTTATT 58.647 37.500 0.00 0.00 31.02 1.40
2464 4067 4.738243 GCCACACCAAAGGTTTTTCGTTAT 60.738 41.667 0.00 0.00 31.02 1.89
2465 4068 3.429135 GCCACACCAAAGGTTTTTCGTTA 60.429 43.478 0.00 0.00 31.02 3.18
2466 4069 2.675603 GCCACACCAAAGGTTTTTCGTT 60.676 45.455 0.00 0.00 31.02 3.85
2467 4070 1.134936 GCCACACCAAAGGTTTTTCGT 60.135 47.619 0.00 0.00 31.02 3.85
2468 4071 1.566404 GCCACACCAAAGGTTTTTCG 58.434 50.000 0.00 0.00 31.02 3.46
2469 4072 1.804746 CGGCCACACCAAAGGTTTTTC 60.805 52.381 2.24 0.00 39.03 2.29
2470 4073 0.176910 CGGCCACACCAAAGGTTTTT 59.823 50.000 2.24 0.00 39.03 1.94
2471 4074 1.819905 CGGCCACACCAAAGGTTTT 59.180 52.632 2.24 0.00 39.03 2.43
2472 4075 2.791868 GCGGCCACACCAAAGGTTT 61.792 57.895 2.24 0.00 39.03 3.27
2473 4076 3.223589 GCGGCCACACCAAAGGTT 61.224 61.111 2.24 0.00 39.03 3.50
2474 4077 3.808218 ATGCGGCCACACCAAAGGT 62.808 57.895 2.24 0.00 39.03 3.50
2475 4078 2.990967 ATGCGGCCACACCAAAGG 60.991 61.111 2.24 0.00 39.03 3.11
2476 4079 2.568090 GATGCGGCCACACCAAAG 59.432 61.111 2.24 0.00 39.03 2.77
2477 4080 2.988684 GGATGCGGCCACACCAAA 60.989 61.111 2.24 0.00 39.03 3.28
2478 4081 3.582242 ATGGATGCGGCCACACCAA 62.582 57.895 15.87 0.00 41.56 3.67
2479 4082 4.045781 ATGGATGCGGCCACACCA 62.046 61.111 14.73 14.73 41.56 4.17
2480 4083 3.520862 CATGGATGCGGCCACACC 61.521 66.667 2.24 4.45 41.56 4.16
2481 4084 3.520862 CCATGGATGCGGCCACAC 61.521 66.667 5.56 0.00 41.56 3.82
2489 4092 0.106708 TAGAGGTTCGCCATGGATGC 59.893 55.000 18.40 0.00 40.60 3.91
2490 4093 2.620251 TTAGAGGTTCGCCATGGATG 57.380 50.000 18.40 7.05 40.60 3.51
2491 4094 3.864789 AATTAGAGGTTCGCCATGGAT 57.135 42.857 18.40 0.00 40.60 3.41
2492 4095 3.181458 GGTAATTAGAGGTTCGCCATGGA 60.181 47.826 18.40 0.00 40.60 3.41
2493 4096 3.139077 GGTAATTAGAGGTTCGCCATGG 58.861 50.000 7.63 7.63 40.60 3.66
2494 4097 3.804036 TGGTAATTAGAGGTTCGCCATG 58.196 45.455 0.00 0.00 40.60 3.66
2495 4098 4.102524 TCATGGTAATTAGAGGTTCGCCAT 59.897 41.667 0.00 0.00 40.60 4.40
2496 4099 3.452990 TCATGGTAATTAGAGGTTCGCCA 59.547 43.478 0.00 0.00 40.60 5.69
2497 4100 4.067972 TCATGGTAATTAGAGGTTCGCC 57.932 45.455 0.00 0.00 37.60 5.54
2498 4101 5.297547 TCATCATGGTAATTAGAGGTTCGC 58.702 41.667 0.00 0.00 0.00 4.70
2499 4102 6.749139 TCTCATCATGGTAATTAGAGGTTCG 58.251 40.000 0.00 0.00 0.00 3.95
2500 4103 7.987458 TGTTCTCATCATGGTAATTAGAGGTTC 59.013 37.037 0.00 0.00 0.00 3.62
2501 4104 7.861629 TGTTCTCATCATGGTAATTAGAGGTT 58.138 34.615 0.00 0.00 0.00 3.50
2502 4105 7.437713 TGTTCTCATCATGGTAATTAGAGGT 57.562 36.000 0.00 0.00 0.00 3.85
2503 4106 7.989741 AGTTGTTCTCATCATGGTAATTAGAGG 59.010 37.037 0.00 0.00 0.00 3.69
2504 4107 8.954950 AGTTGTTCTCATCATGGTAATTAGAG 57.045 34.615 0.00 0.00 0.00 2.43
2506 4109 9.265901 CCTAGTTGTTCTCATCATGGTAATTAG 57.734 37.037 0.00 0.00 0.00 1.73
2507 4110 8.988060 TCCTAGTTGTTCTCATCATGGTAATTA 58.012 33.333 0.00 0.00 0.00 1.40
2508 4111 7.861629 TCCTAGTTGTTCTCATCATGGTAATT 58.138 34.615 0.00 0.00 0.00 1.40
2509 4112 7.345653 TCTCCTAGTTGTTCTCATCATGGTAAT 59.654 37.037 0.00 0.00 0.00 1.89
2510 4113 6.667848 TCTCCTAGTTGTTCTCATCATGGTAA 59.332 38.462 0.00 0.00 0.00 2.85
2511 4114 6.194967 TCTCCTAGTTGTTCTCATCATGGTA 58.805 40.000 0.00 0.00 0.00 3.25
2512 4115 5.026121 TCTCCTAGTTGTTCTCATCATGGT 58.974 41.667 0.00 0.00 0.00 3.55
2513 4116 5.599732 CTCTCCTAGTTGTTCTCATCATGG 58.400 45.833 0.00 0.00 0.00 3.66
2514 4117 5.049167 GCTCTCCTAGTTGTTCTCATCATG 58.951 45.833 0.00 0.00 0.00 3.07
2515 4118 4.713814 TGCTCTCCTAGTTGTTCTCATCAT 59.286 41.667 0.00 0.00 0.00 2.45
2516 4119 4.081972 GTGCTCTCCTAGTTGTTCTCATCA 60.082 45.833 0.00 0.00 0.00 3.07
2517 4120 4.081972 TGTGCTCTCCTAGTTGTTCTCATC 60.082 45.833 0.00 0.00 0.00 2.92
2518 4121 3.834813 TGTGCTCTCCTAGTTGTTCTCAT 59.165 43.478 0.00 0.00 0.00 2.90
2519 4122 3.005897 GTGTGCTCTCCTAGTTGTTCTCA 59.994 47.826 0.00 0.00 0.00 3.27
2520 4123 3.580731 GTGTGCTCTCCTAGTTGTTCTC 58.419 50.000 0.00 0.00 0.00 2.87
2521 4124 2.029828 CGTGTGCTCTCCTAGTTGTTCT 60.030 50.000 0.00 0.00 0.00 3.01
2522 4125 2.329379 CGTGTGCTCTCCTAGTTGTTC 58.671 52.381 0.00 0.00 0.00 3.18
2523 4126 1.605712 GCGTGTGCTCTCCTAGTTGTT 60.606 52.381 0.00 0.00 38.39 2.83
2524 4127 0.038159 GCGTGTGCTCTCCTAGTTGT 60.038 55.000 0.00 0.00 38.39 3.32
2525 4128 0.737715 GGCGTGTGCTCTCCTAGTTG 60.738 60.000 0.00 0.00 42.25 3.16
2526 4129 0.900647 AGGCGTGTGCTCTCCTAGTT 60.901 55.000 0.00 0.00 42.25 2.24
2527 4130 0.034380 TAGGCGTGTGCTCTCCTAGT 60.034 55.000 0.00 0.00 42.25 2.57
2528 4131 0.665835 CTAGGCGTGTGCTCTCCTAG 59.334 60.000 11.82 11.82 41.31 3.02
2529 4132 1.384989 GCTAGGCGTGTGCTCTCCTA 61.385 60.000 0.00 0.00 42.25 2.94
2530 4133 2.716017 GCTAGGCGTGTGCTCTCCT 61.716 63.158 0.00 0.00 42.25 3.69
2531 4134 2.202810 GCTAGGCGTGTGCTCTCC 60.203 66.667 0.00 0.00 42.25 3.71
2626 4230 2.103373 GACTATGAGAGAGTGGCCACA 58.897 52.381 36.39 16.40 0.00 4.17
2628 4232 1.341089 ACGACTATGAGAGAGTGGCCA 60.341 52.381 0.00 0.00 0.00 5.36
2639 4243 1.029947 TGGAGAGCGCACGACTATGA 61.030 55.000 11.47 0.00 0.00 2.15
2647 4251 0.312416 ATCGTAGATGGAGAGCGCAC 59.688 55.000 11.47 2.25 45.12 5.34
2651 4255 1.816224 GAGGGATCGTAGATGGAGAGC 59.184 57.143 0.00 0.00 45.12 4.09
2865 4469 1.600916 GAAGCTCGGCCACCAAAGT 60.601 57.895 2.24 0.00 0.00 2.66
2935 5611 5.995565 TCGAGAATCCAACTTCCTTAGAA 57.004 39.130 0.00 0.00 0.00 2.10
3163 6383 1.777878 TCCCGAGAAGATCTAGGAGCT 59.222 52.381 7.95 0.00 41.15 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.