Multiple sequence alignment - TraesCS3A01G138500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G138500 chr3A 100.000 2944 0 0 1 2944 115850329 115847386 0.000000e+00 5437.0
1 TraesCS3A01G138500 chr3A 100.000 270 0 0 3373 3642 115846957 115846688 1.950000e-137 499.0
2 TraesCS3A01G138500 chr3A 82.545 275 40 6 3373 3642 649726988 649726717 6.080000e-58 235.0
3 TraesCS3A01G138500 chr3B 93.454 1329 62 12 459 1783 148500420 148499113 0.000000e+00 1949.0
4 TraesCS3A01G138500 chr3B 89.060 1106 70 22 1818 2899 148499113 148498035 0.000000e+00 1325.0
5 TraesCS3A01G138500 chr3B 90.883 351 17 7 86 427 148500918 148500574 1.190000e-124 457.0
6 TraesCS3A01G138500 chr3B 86.017 236 28 4 3409 3642 148686795 148686563 7.810000e-62 248.0
7 TraesCS3A01G138500 chr3B 95.455 44 2 0 40 83 148501378 148501335 1.810000e-08 71.3
8 TraesCS3A01G138500 chr5A 81.467 1295 155 57 508 1781 458562441 458561211 0.000000e+00 983.0
9 TraesCS3A01G138500 chr5A 83.378 752 78 30 723 1470 458525186 458524478 0.000000e+00 652.0
10 TraesCS3A01G138500 chr5A 89.123 285 30 1 791 1074 458331224 458330940 1.610000e-93 353.0
11 TraesCS3A01G138500 chr5A 82.192 219 39 0 1172 1390 458192498 458192280 4.800000e-44 189.0
12 TraesCS3A01G138500 chr5A 81.651 218 36 3 1172 1387 456088426 456088641 1.040000e-40 178.0
13 TraesCS3A01G138500 chr5A 95.238 42 2 0 351 392 458562677 458562636 2.350000e-07 67.6
14 TraesCS3A01G138500 chr5A 88.000 50 3 3 2 50 16339050 16339003 5.080000e-04 56.5
15 TraesCS3A01G138500 chr5D 83.130 1067 117 39 723 1781 357396701 357395690 0.000000e+00 915.0
16 TraesCS3A01G138500 chr5D 88.251 366 38 5 723 1085 357371832 357371469 2.010000e-117 433.0
17 TraesCS3A01G138500 chr5D 87.027 370 37 8 723 1086 357159781 357159417 1.220000e-109 407.0
18 TraesCS3A01G138500 chr5D 77.879 547 77 29 2089 2619 357370379 357369861 2.130000e-77 300.0
19 TraesCS3A01G138500 chr5B 80.462 1300 156 62 508 1781 422040956 422039729 0.000000e+00 904.0
20 TraesCS3A01G138500 chr5B 83.560 736 77 30 723 1454 421998525 421997830 0.000000e+00 649.0
21 TraesCS3A01G138500 chr5B 76.600 1000 148 53 1889 2860 422039626 422038685 4.260000e-129 472.0
22 TraesCS3A01G138500 chr5B 82.192 219 39 0 1172 1390 421612414 421612196 4.800000e-44 189.0
23 TraesCS3A01G138500 chr5B 82.192 219 39 0 1172 1390 421621292 421621074 4.800000e-44 189.0
24 TraesCS3A01G138500 chr5B 85.345 116 17 0 2285 2400 421859921 421859806 1.780000e-23 121.0
25 TraesCS3A01G138500 chr2D 87.712 236 25 4 3411 3642 513553434 513553199 4.630000e-69 272.0
26 TraesCS3A01G138500 chr2D 86.555 238 28 2 3409 3642 591383958 591383721 3.610000e-65 259.0
27 TraesCS3A01G138500 chr2D 84.064 251 35 4 3396 3642 164540579 164540828 1.690000e-58 237.0
28 TraesCS3A01G138500 chr4D 85.259 251 32 3 3396 3642 396145549 396145300 1.680000e-63 254.0
29 TraesCS3A01G138500 chr3D 85.774 239 31 3 3405 3642 560258564 560258800 2.170000e-62 250.0
30 TraesCS3A01G138500 chr3D 90.226 133 13 0 2812 2944 98167946 98167814 1.340000e-39 174.0
31 TraesCS3A01G138500 chr1B 85.020 247 36 1 3396 3642 311139799 311140044 2.170000e-62 250.0
32 TraesCS3A01G138500 chr7D 83.846 260 33 9 3389 3642 518648491 518648235 4.700000e-59 239.0
33 TraesCS3A01G138500 chr2A 82.028 217 37 2 1172 1387 80264565 80264780 2.230000e-42 183.0
34 TraesCS3A01G138500 chr1A 82.857 210 31 4 3437 3642 469661046 469660838 2.230000e-42 183.0
35 TraesCS3A01G138500 chr6B 88.000 50 3 3 2 50 116820474 116820427 5.080000e-04 56.5
36 TraesCS3A01G138500 chr6B 88.000 50 3 3 2 50 668474876 668474829 5.080000e-04 56.5
37 TraesCS3A01G138500 chr6B 85.185 54 6 2 2 54 599768195 599768143 2.000000e-03 54.7
38 TraesCS3A01G138500 chr4B 88.000 50 3 3 2 50 401759455 401759502 5.080000e-04 56.5
39 TraesCS3A01G138500 chr2B 88.000 50 3 3 2 50 151786535 151786582 5.080000e-04 56.5
40 TraesCS3A01G138500 chr2B 88.000 50 3 3 2 50 558663383 558663336 5.080000e-04 56.5
41 TraesCS3A01G138500 chr2B 100.000 29 0 0 2 30 625981804 625981832 2.000000e-03 54.7
42 TraesCS3A01G138500 chr7B 100.000 29 0 0 2 30 238182112 238182140 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G138500 chr3A 115846688 115850329 3641 True 2968.000 5437 100.0000 1 3642 2 chr3A.!!$R2 3641
1 TraesCS3A01G138500 chr3B 148498035 148501378 3343 True 950.575 1949 92.2130 40 2899 4 chr3B.!!$R2 2859
2 TraesCS3A01G138500 chr5A 458524478 458525186 708 True 652.000 652 83.3780 723 1470 1 chr5A.!!$R4 747
3 TraesCS3A01G138500 chr5A 458561211 458562677 1466 True 525.300 983 88.3525 351 1781 2 chr5A.!!$R5 1430
4 TraesCS3A01G138500 chr5D 357395690 357396701 1011 True 915.000 915 83.1300 723 1781 1 chr5D.!!$R2 1058
5 TraesCS3A01G138500 chr5D 357369861 357371832 1971 True 366.500 433 83.0650 723 2619 2 chr5D.!!$R3 1896
6 TraesCS3A01G138500 chr5B 422038685 422040956 2271 True 688.000 904 78.5310 508 2860 2 chr5B.!!$R5 2352
7 TraesCS3A01G138500 chr5B 421997830 421998525 695 True 649.000 649 83.5600 723 1454 1 chr5B.!!$R4 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 883 0.109272 CAGCACTCTAGAACGGCGAA 60.109 55.0 16.62 0.00 0.00 4.70 F
451 887 1.096416 ACTCTAGAACGGCGAAGAGG 58.904 55.0 24.87 14.16 39.83 3.69 F
1477 2095 1.198713 CCTGGTCATGGCAGACTAGT 58.801 55.0 20.33 0.00 43.26 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 3041 0.109272 TCACCGCTGTCATCGAGTTC 60.109 55.0 0.0 0.0 0.00 3.01 R
2274 3042 0.388649 GTCACCGCTGTCATCGAGTT 60.389 55.0 0.0 0.0 0.00 3.01 R
2922 3726 0.107214 CGCCTTGGAGATGCCCTAAA 60.107 55.0 0.0 0.0 34.97 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.947189 TCTCTACAAAGACTTATATTTAGGGGA 57.053 33.333 0.00 0.00 0.00 4.81
33 34 9.984190 CTCTACAAAGACTTATATTTAGGGGAC 57.016 37.037 0.00 0.00 0.00 4.46
147 562 3.993736 GGAACAAATTTGGAATGGAACCG 59.006 43.478 21.74 0.00 0.00 4.44
204 619 6.046593 CCTTATCTACCTGCACGTTTAATGA 58.953 40.000 0.00 0.00 0.00 2.57
236 651 8.943909 AATTTACTTCCTTATTCGTAGGAGTG 57.056 34.615 0.00 0.00 42.51 3.51
261 676 9.066892 TGCAAATTAAGTCCATATTAGCCTTAG 57.933 33.333 0.00 0.00 0.00 2.18
286 701 6.607689 AGAATCTCGATCTCTTGTAATAGCG 58.392 40.000 0.00 0.00 0.00 4.26
287 702 6.428465 AGAATCTCGATCTCTTGTAATAGCGA 59.572 38.462 0.00 0.00 0.00 4.93
328 746 5.403246 CCATCGGATCTCTCCTAATTAACG 58.597 45.833 0.00 0.00 39.65 3.18
333 751 3.984508 TCTCTCCTAATTAACGGCTCG 57.015 47.619 0.00 0.00 0.00 5.03
407 843 0.317269 GCCATGTCGATTCCATTGCG 60.317 55.000 0.00 0.00 0.00 4.85
429 865 2.512485 ACGTACGTCAACAATGTCCA 57.488 45.000 16.72 0.00 0.00 4.02
435 871 1.195448 CGTCAACAATGTCCAGCACTC 59.805 52.381 0.00 0.00 0.00 3.51
444 880 0.458716 GTCCAGCACTCTAGAACGGC 60.459 60.000 0.00 0.00 0.00 5.68
445 881 1.517257 CCAGCACTCTAGAACGGCG 60.517 63.158 4.80 4.80 0.00 6.46
447 883 0.109272 CAGCACTCTAGAACGGCGAA 60.109 55.000 16.62 0.00 0.00 4.70
451 887 1.096416 ACTCTAGAACGGCGAAGAGG 58.904 55.000 24.87 14.16 39.83 3.69
455 891 1.318158 TAGAACGGCGAAGAGGACCC 61.318 60.000 16.62 0.00 0.00 4.46
456 892 2.920912 AACGGCGAAGAGGACCCA 60.921 61.111 16.62 0.00 0.00 4.51
457 893 2.240162 GAACGGCGAAGAGGACCCAT 62.240 60.000 16.62 0.00 0.00 4.00
489 1051 1.673808 CTTTACCCCCTCCGACCTCG 61.674 65.000 0.00 0.00 39.44 4.63
530 1096 8.193250 TCTATAAAAACACCAAAGATCTACGC 57.807 34.615 0.00 0.00 0.00 4.42
531 1097 3.806316 AAAACACCAAAGATCTACGCG 57.194 42.857 3.53 3.53 0.00 6.01
575 1141 3.792401 TGACAGCATTAGGTTACGATGG 58.208 45.455 0.00 0.00 0.00 3.51
604 1173 2.798501 CGCGCCTTACACGGTCATG 61.799 63.158 0.00 0.00 0.00 3.07
616 1185 1.890979 GGTCATGCTGGCGATCCTG 60.891 63.158 0.00 0.00 0.00 3.86
694 1266 3.382803 CTTCCTGGAGAGCAGGGCG 62.383 68.421 0.00 0.00 40.16 6.13
882 1454 2.429571 TTACGTCACGGTGAGCGC 60.430 61.111 23.29 0.00 0.00 5.92
1086 1659 1.216678 TGGAACAATGGTGGGTGACTT 59.783 47.619 0.00 0.00 31.92 3.01
1088 1661 2.582052 GAACAATGGTGGGTGACTTGA 58.418 47.619 0.00 0.00 0.00 3.02
1089 1662 1.981256 ACAATGGTGGGTGACTTGAC 58.019 50.000 0.00 0.00 0.00 3.18
1090 1663 1.494721 ACAATGGTGGGTGACTTGACT 59.505 47.619 0.00 0.00 0.00 3.41
1091 1664 1.881973 CAATGGTGGGTGACTTGACTG 59.118 52.381 0.00 0.00 0.00 3.51
1111 1686 4.142138 ACTGATCGACCCTCTTGATTACAC 60.142 45.833 0.00 0.00 0.00 2.90
1112 1687 3.767131 TGATCGACCCTCTTGATTACACA 59.233 43.478 0.00 0.00 0.00 3.72
1155 1730 6.561614 CGAGTCAAGAAGGTATAAGCTGTTA 58.438 40.000 0.00 0.00 0.00 2.41
1332 1937 3.072468 CCGGAGTACAAGGGCCGA 61.072 66.667 0.00 0.00 46.29 5.54
1477 2095 1.198713 CCTGGTCATGGCAGACTAGT 58.801 55.000 20.33 0.00 43.26 2.57
1480 2098 2.234661 CTGGTCATGGCAGACTAGTTCA 59.765 50.000 16.56 0.00 40.84 3.18
1482 2100 2.275318 GTCATGGCAGACTAGTTCAGC 58.725 52.381 0.00 1.52 36.01 4.26
1484 2102 2.005451 CATGGCAGACTAGTTCAGCAC 58.995 52.381 14.42 6.92 38.49 4.40
1490 2108 3.367806 GCAGACTAGTTCAGCACTGATGA 60.368 47.826 10.35 0.00 39.64 2.92
1495 2113 3.690475 AGTTCAGCACTGATGACATCA 57.310 42.857 17.09 17.09 39.64 3.07
1496 2114 4.011966 AGTTCAGCACTGATGACATCAA 57.988 40.909 18.49 0.52 39.64 2.57
1514 2139 4.015872 TCAATGGCTAATCGGGGTTATC 57.984 45.455 0.00 0.00 0.00 1.75
1515 2140 3.081804 CAATGGCTAATCGGGGTTATCC 58.918 50.000 0.00 0.00 0.00 2.59
1516 2141 1.809133 TGGCTAATCGGGGTTATCCA 58.191 50.000 0.00 0.00 37.22 3.41
1517 2142 1.418637 TGGCTAATCGGGGTTATCCAC 59.581 52.381 0.00 0.00 37.22 4.02
1641 2269 2.358003 GAGCACTGCAGCTTCGGT 60.358 61.111 15.27 5.48 46.75 4.69
1699 2327 4.351938 CGTCCGTCAGAACCGGCA 62.352 66.667 0.00 0.00 45.09 5.69
1787 2430 9.689976 CTCCAGTAGCTACGTACGTATATATAT 57.310 37.037 26.98 12.94 0.00 0.86
1794 2437 8.549548 AGCTACGTACGTATATATATGCTCTTG 58.450 37.037 26.98 11.94 0.00 3.02
1801 2444 8.918961 ACGTATATATATGCTCTTGCTCTTTC 57.081 34.615 11.23 0.00 40.48 2.62
1803 2446 9.358872 CGTATATATATGCTCTTGCTCTTTCAA 57.641 33.333 5.44 0.00 40.48 2.69
1814 2457 7.575343 GCTCTTGCTCTTTCAAAAATCTCATCT 60.575 37.037 0.00 0.00 36.03 2.90
1815 2458 7.591165 TCTTGCTCTTTCAAAAATCTCATCTG 58.409 34.615 0.00 0.00 0.00 2.90
1816 2459 5.706916 TGCTCTTTCAAAAATCTCATCTGC 58.293 37.500 0.00 0.00 0.00 4.26
1817 2460 5.242171 TGCTCTTTCAAAAATCTCATCTGCA 59.758 36.000 0.00 0.00 0.00 4.41
1835 2478 1.264288 GCAGTTAGCGCCAACATATCC 59.736 52.381 20.58 0.63 0.00 2.59
1843 2489 2.146342 CGCCAACATATCCCATCAGAC 58.854 52.381 0.00 0.00 0.00 3.51
1884 2534 5.924475 ATTAATTAGCTGATGTACGTGGC 57.076 39.130 0.00 0.00 0.00 5.01
2082 2757 3.869246 ACCTTGTTCTGTTCACAGTAACG 59.131 43.478 6.84 0.00 44.12 3.18
2092 2848 6.422701 TCTGTTCACAGTAACGTAAATTGGAG 59.577 38.462 6.84 0.00 44.12 3.86
2151 2907 4.023536 GGCTTGTCAACAACGGATTAAGAA 60.024 41.667 0.00 0.00 0.00 2.52
2188 2944 7.760131 GGTAACTTACATACGTATTTGCAGA 57.240 36.000 5.03 0.00 0.00 4.26
2189 2945 7.615790 GGTAACTTACATACGTATTTGCAGAC 58.384 38.462 5.03 0.00 0.00 3.51
2221 2977 8.749499 GTTCATTCAAAGACACAAAATGAAGAG 58.251 33.333 8.59 0.00 43.28 2.85
2273 3041 5.121298 CCATCTCATTACATCACGGCTAATG 59.879 44.000 0.00 0.00 31.66 1.90
2274 3042 5.529581 TCTCATTACATCACGGCTAATGA 57.470 39.130 5.01 5.01 35.47 2.57
2275 3043 5.912892 TCTCATTACATCACGGCTAATGAA 58.087 37.500 6.21 0.00 36.76 2.57
2317 3085 2.061773 GATGATGTCTGCCCGATTACG 58.938 52.381 0.00 0.00 39.43 3.18
2353 3121 3.111838 CGTCAAGGATCTCAATCTGACG 58.888 50.000 12.63 12.63 45.72 4.35
2354 3122 3.452474 GTCAAGGATCTCAATCTGACGG 58.548 50.000 0.00 0.00 31.40 4.79
2575 3363 2.911484 AGCTTCCAGCCTAAAAGATCG 58.089 47.619 0.00 0.00 43.77 3.69
2597 3385 4.152580 CGCTTGTTCTTTTCTACTCCTTCC 59.847 45.833 0.00 0.00 0.00 3.46
2599 3387 5.410132 GCTTGTTCTTTTCTACTCCTTCCTC 59.590 44.000 0.00 0.00 0.00 3.71
2653 3441 5.405935 TGAACGCCTGAGCATACATATAT 57.594 39.130 0.00 0.00 39.83 0.86
2654 3442 6.524101 TGAACGCCTGAGCATACATATATA 57.476 37.500 0.00 0.00 39.83 0.86
2655 3443 7.112452 TGAACGCCTGAGCATACATATATAT 57.888 36.000 0.00 0.00 39.83 0.86
2663 3451 7.772292 CCTGAGCATACATATATATTGCTGGTT 59.228 37.037 20.16 2.29 0.00 3.67
2664 3452 9.822185 CTGAGCATACATATATATTGCTGGTTA 57.178 33.333 20.16 7.84 0.00 2.85
2694 3485 1.459450 TATGGAAGTTTTCAGCCGGC 58.541 50.000 21.89 21.89 0.00 6.13
2699 3490 1.172812 AAGTTTTCAGCCGGCTGGAC 61.173 55.000 46.58 38.59 43.75 4.02
2719 3511 4.833390 GACAAACTACTAGTCCAGCCATT 58.167 43.478 0.00 0.00 0.00 3.16
2798 3595 3.235750 TCCCACATGATTGGTGTTCAA 57.764 42.857 0.00 0.00 40.01 2.69
2837 3635 4.158394 CCCAAGAATGTTAGGGACACATTG 59.842 45.833 3.07 0.00 43.47 2.82
2853 3657 8.129211 GGGACACATTGCTATTTACTCAATAAC 58.871 37.037 0.00 0.00 0.00 1.89
2873 3677 8.830428 CAATAACATAATACATTGTGATTCGCG 58.170 33.333 0.00 0.00 33.73 5.87
2887 3691 3.615056 TGATTCGCGTAGTGTGGTAAATG 59.385 43.478 5.77 0.00 40.08 2.32
2901 3705 9.569122 AGTGTGGTAAATGAAGTTTTATACAGT 57.431 29.630 0.00 0.00 29.54 3.55
2912 3716 9.431887 TGAAGTTTTATACAGTAGTCATCAACC 57.568 33.333 0.00 0.00 0.00 3.77
2913 3717 8.475331 AAGTTTTATACAGTAGTCATCAACCG 57.525 34.615 0.00 0.00 0.00 4.44
2914 3718 7.039882 AGTTTTATACAGTAGTCATCAACCGG 58.960 38.462 0.00 0.00 0.00 5.28
2915 3719 2.953466 TACAGTAGTCATCAACCGGC 57.047 50.000 0.00 0.00 0.00 6.13
2916 3720 0.973632 ACAGTAGTCATCAACCGGCA 59.026 50.000 0.00 0.00 0.00 5.69
2917 3721 1.346395 ACAGTAGTCATCAACCGGCAA 59.654 47.619 0.00 0.00 0.00 4.52
2918 3722 2.002586 CAGTAGTCATCAACCGGCAAG 58.997 52.381 0.00 0.00 0.00 4.01
2920 3724 1.066430 GTAGTCATCAACCGGCAAGGA 60.066 52.381 0.00 0.00 45.00 3.36
2921 3725 0.620556 AGTCATCAACCGGCAAGGAT 59.379 50.000 0.00 0.00 45.00 3.24
2922 3726 1.004745 AGTCATCAACCGGCAAGGATT 59.995 47.619 0.00 0.00 45.00 3.01
2923 3727 1.818674 GTCATCAACCGGCAAGGATTT 59.181 47.619 0.00 0.00 45.00 2.17
2924 3728 2.231235 GTCATCAACCGGCAAGGATTTT 59.769 45.455 0.00 0.00 45.00 1.82
2925 3729 3.442273 GTCATCAACCGGCAAGGATTTTA 59.558 43.478 0.00 0.00 45.00 1.52
2926 3730 3.694072 TCATCAACCGGCAAGGATTTTAG 59.306 43.478 0.00 0.00 45.00 1.85
2927 3731 2.442413 TCAACCGGCAAGGATTTTAGG 58.558 47.619 0.00 0.00 45.00 2.69
2928 3732 1.476488 CAACCGGCAAGGATTTTAGGG 59.524 52.381 0.00 0.00 45.00 3.53
2929 3733 0.683179 ACCGGCAAGGATTTTAGGGC 60.683 55.000 0.00 0.00 45.00 5.19
2930 3734 0.682855 CCGGCAAGGATTTTAGGGCA 60.683 55.000 0.00 0.00 45.00 5.36
2931 3735 1.402787 CGGCAAGGATTTTAGGGCAT 58.597 50.000 0.00 0.00 0.00 4.40
2932 3736 1.338020 CGGCAAGGATTTTAGGGCATC 59.662 52.381 0.00 0.00 0.00 3.91
2933 3737 2.670939 GGCAAGGATTTTAGGGCATCT 58.329 47.619 0.00 0.00 0.00 2.90
2934 3738 2.625314 GGCAAGGATTTTAGGGCATCTC 59.375 50.000 0.00 0.00 0.00 2.75
2935 3739 2.625314 GCAAGGATTTTAGGGCATCTCC 59.375 50.000 0.00 0.00 0.00 3.71
2936 3740 3.902218 CAAGGATTTTAGGGCATCTCCA 58.098 45.455 0.00 0.00 36.21 3.86
2937 3741 4.280819 CAAGGATTTTAGGGCATCTCCAA 58.719 43.478 0.00 0.00 36.21 3.53
2938 3742 4.176120 AGGATTTTAGGGCATCTCCAAG 57.824 45.455 0.00 0.00 36.21 3.61
2939 3743 3.117360 AGGATTTTAGGGCATCTCCAAGG 60.117 47.826 0.00 0.00 36.21 3.61
2940 3744 2.143876 TTTTAGGGCATCTCCAAGGC 57.856 50.000 0.00 0.00 36.21 4.35
2941 3745 0.107214 TTTAGGGCATCTCCAAGGCG 60.107 55.000 0.00 0.00 36.21 5.52
2942 3746 1.983119 TTAGGGCATCTCCAAGGCGG 61.983 60.000 0.00 0.00 36.21 6.13
2943 3747 2.889521 TAGGGCATCTCCAAGGCGGA 62.890 60.000 0.00 0.00 43.61 5.54
3395 4199 4.759782 TCCTTCTTTCTCTATTGCCTTCG 58.240 43.478 0.00 0.00 0.00 3.79
3396 4200 3.311048 CCTTCTTTCTCTATTGCCTTCGC 59.689 47.826 0.00 0.00 0.00 4.70
3397 4201 2.906354 TCTTTCTCTATTGCCTTCGCC 58.094 47.619 0.00 0.00 0.00 5.54
3398 4202 1.594862 CTTTCTCTATTGCCTTCGCCG 59.405 52.381 0.00 0.00 0.00 6.46
3399 4203 0.810031 TTCTCTATTGCCTTCGCCGC 60.810 55.000 0.00 0.00 0.00 6.53
3400 4204 1.227380 CTCTATTGCCTTCGCCGCT 60.227 57.895 0.00 0.00 0.00 5.52
3401 4205 0.032130 CTCTATTGCCTTCGCCGCTA 59.968 55.000 0.00 0.00 0.00 4.26
3402 4206 0.249322 TCTATTGCCTTCGCCGCTAC 60.249 55.000 0.00 0.00 0.00 3.58
3403 4207 0.529773 CTATTGCCTTCGCCGCTACA 60.530 55.000 0.00 0.00 0.00 2.74
3404 4208 0.105964 TATTGCCTTCGCCGCTACAT 59.894 50.000 0.00 0.00 0.00 2.29
3405 4209 1.160329 ATTGCCTTCGCCGCTACATC 61.160 55.000 0.00 0.00 0.00 3.06
3406 4210 2.202878 GCCTTCGCCGCTACATCA 60.203 61.111 0.00 0.00 0.00 3.07
3407 4211 2.526120 GCCTTCGCCGCTACATCAC 61.526 63.158 0.00 0.00 0.00 3.06
3408 4212 1.883084 CCTTCGCCGCTACATCACC 60.883 63.158 0.00 0.00 0.00 4.02
3409 4213 1.153647 CTTCGCCGCTACATCACCA 60.154 57.895 0.00 0.00 0.00 4.17
3410 4214 1.421410 CTTCGCCGCTACATCACCAC 61.421 60.000 0.00 0.00 0.00 4.16
3411 4215 2.845752 TTCGCCGCTACATCACCACC 62.846 60.000 0.00 0.00 0.00 4.61
3412 4216 2.513897 GCCGCTACATCACCACCC 60.514 66.667 0.00 0.00 0.00 4.61
3413 4217 2.189521 CCGCTACATCACCACCCC 59.810 66.667 0.00 0.00 0.00 4.95
3414 4218 2.202878 CGCTACATCACCACCCCG 60.203 66.667 0.00 0.00 0.00 5.73
3415 4219 2.513897 GCTACATCACCACCCCGC 60.514 66.667 0.00 0.00 0.00 6.13
3416 4220 2.189521 CTACATCACCACCCCGCC 59.810 66.667 0.00 0.00 0.00 6.13
3417 4221 3.733344 CTACATCACCACCCCGCCG 62.733 68.421 0.00 0.00 0.00 6.46
3425 4229 3.072468 CACCCCGCCGGAACTCTA 61.072 66.667 5.05 0.00 34.64 2.43
3426 4230 2.042230 ACCCCGCCGGAACTCTAT 60.042 61.111 5.05 0.00 34.64 1.98
3427 4231 2.421739 CCCCGCCGGAACTCTATG 59.578 66.667 5.05 0.00 0.00 2.23
3428 4232 2.432300 CCCCGCCGGAACTCTATGT 61.432 63.158 5.05 0.00 0.00 2.29
3429 4233 1.067582 CCCGCCGGAACTCTATGTC 59.932 63.158 5.05 0.00 0.00 3.06
3430 4234 1.392710 CCCGCCGGAACTCTATGTCT 61.393 60.000 5.05 0.00 0.00 3.41
3431 4235 0.460311 CCGCCGGAACTCTATGTCTT 59.540 55.000 5.05 0.00 0.00 3.01
3432 4236 1.536284 CCGCCGGAACTCTATGTCTTC 60.536 57.143 5.05 0.00 0.00 2.87
3433 4237 1.841450 GCCGGAACTCTATGTCTTCG 58.159 55.000 5.05 0.00 0.00 3.79
3434 4238 1.134560 GCCGGAACTCTATGTCTTCGT 59.865 52.381 5.05 0.00 0.00 3.85
3435 4239 2.416972 GCCGGAACTCTATGTCTTCGTT 60.417 50.000 5.05 0.00 0.00 3.85
3436 4240 3.181493 GCCGGAACTCTATGTCTTCGTTA 60.181 47.826 5.05 0.00 0.00 3.18
3437 4241 4.349501 CCGGAACTCTATGTCTTCGTTAC 58.650 47.826 0.00 0.00 0.00 2.50
3438 4242 4.349501 CGGAACTCTATGTCTTCGTTACC 58.650 47.826 0.00 0.00 0.00 2.85
3439 4243 4.096081 CGGAACTCTATGTCTTCGTTACCT 59.904 45.833 0.00 0.00 0.00 3.08
3440 4244 5.580661 GGAACTCTATGTCTTCGTTACCTC 58.419 45.833 0.00 0.00 0.00 3.85
3441 4245 5.450274 GGAACTCTATGTCTTCGTTACCTCC 60.450 48.000 0.00 0.00 0.00 4.30
3442 4246 4.597004 ACTCTATGTCTTCGTTACCTCCA 58.403 43.478 0.00 0.00 0.00 3.86
3443 4247 5.014858 ACTCTATGTCTTCGTTACCTCCAA 58.985 41.667 0.00 0.00 0.00 3.53
3444 4248 5.105837 ACTCTATGTCTTCGTTACCTCCAAC 60.106 44.000 0.00 0.00 0.00 3.77
3452 4256 3.717350 CGTTACCTCCAACGTTTCATC 57.283 47.619 0.00 0.00 44.77 2.92
3453 4257 2.414138 CGTTACCTCCAACGTTTCATCC 59.586 50.000 0.00 0.00 44.77 3.51
3454 4258 2.373540 TACCTCCAACGTTTCATCCG 57.626 50.000 0.00 0.00 0.00 4.18
3455 4259 0.321298 ACCTCCAACGTTTCATCCGG 60.321 55.000 0.00 0.00 0.00 5.14
3456 4260 1.024579 CCTCCAACGTTTCATCCGGG 61.025 60.000 0.00 0.00 0.00 5.73
3457 4261 1.644786 CTCCAACGTTTCATCCGGGC 61.645 60.000 0.00 0.00 0.00 6.13
3458 4262 1.674322 CCAACGTTTCATCCGGGCT 60.674 57.895 0.00 0.00 0.00 5.19
3459 4263 1.644786 CCAACGTTTCATCCGGGCTC 61.645 60.000 0.00 0.00 0.00 4.70
3460 4264 1.376812 AACGTTTCATCCGGGCTCC 60.377 57.895 0.00 0.00 0.00 4.70
3461 4265 2.119484 AACGTTTCATCCGGGCTCCA 62.119 55.000 0.00 0.00 0.00 3.86
3462 4266 2.106683 CGTTTCATCCGGGCTCCAC 61.107 63.158 0.00 0.00 0.00 4.02
3463 4267 1.749258 GTTTCATCCGGGCTCCACC 60.749 63.158 0.00 0.00 37.93 4.61
3472 4276 2.270527 GGCTCCACCCTGCTTCTC 59.729 66.667 0.00 0.00 0.00 2.87
3473 4277 2.270527 GCTCCACCCTGCTTCTCC 59.729 66.667 0.00 0.00 0.00 3.71
3474 4278 2.297129 GCTCCACCCTGCTTCTCCT 61.297 63.158 0.00 0.00 0.00 3.69
3475 4279 1.904032 CTCCACCCTGCTTCTCCTC 59.096 63.158 0.00 0.00 0.00 3.71
3476 4280 1.613630 TCCACCCTGCTTCTCCTCC 60.614 63.158 0.00 0.00 0.00 4.30
3477 4281 2.674220 CCACCCTGCTTCTCCTCCC 61.674 68.421 0.00 0.00 0.00 4.30
3478 4282 1.614824 CACCCTGCTTCTCCTCCCT 60.615 63.158 0.00 0.00 0.00 4.20
3479 4283 1.306568 ACCCTGCTTCTCCTCCCTC 60.307 63.158 0.00 0.00 0.00 4.30
3480 4284 2.069430 CCCTGCTTCTCCTCCCTCC 61.069 68.421 0.00 0.00 0.00 4.30
3481 4285 2.069430 CCTGCTTCTCCTCCCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
3482 4286 1.002792 CTGCTTCTCCTCCCTCCCT 59.997 63.158 0.00 0.00 0.00 4.20
3483 4287 1.306482 TGCTTCTCCTCCCTCCCTG 60.306 63.158 0.00 0.00 0.00 4.45
3484 4288 1.306568 GCTTCTCCTCCCTCCCTGT 60.307 63.158 0.00 0.00 0.00 4.00
3485 4289 0.912006 GCTTCTCCTCCCTCCCTGTT 60.912 60.000 0.00 0.00 0.00 3.16
3486 4290 1.199615 CTTCTCCTCCCTCCCTGTTC 58.800 60.000 0.00 0.00 0.00 3.18
3487 4291 0.491823 TTCTCCTCCCTCCCTGTTCA 59.508 55.000 0.00 0.00 0.00 3.18
3488 4292 0.491823 TCTCCTCCCTCCCTGTTCAA 59.508 55.000 0.00 0.00 0.00 2.69
3489 4293 0.615850 CTCCTCCCTCCCTGTTCAAC 59.384 60.000 0.00 0.00 0.00 3.18
3490 4294 0.840722 TCCTCCCTCCCTGTTCAACC 60.841 60.000 0.00 0.00 0.00 3.77
3491 4295 1.685820 CTCCCTCCCTGTTCAACCC 59.314 63.158 0.00 0.00 0.00 4.11
3492 4296 1.850755 TCCCTCCCTGTTCAACCCC 60.851 63.158 0.00 0.00 0.00 4.95
3493 4297 1.852626 CCCTCCCTGTTCAACCCCT 60.853 63.158 0.00 0.00 0.00 4.79
3494 4298 1.380302 CCTCCCTGTTCAACCCCTG 59.620 63.158 0.00 0.00 0.00 4.45
3495 4299 1.427072 CCTCCCTGTTCAACCCCTGT 61.427 60.000 0.00 0.00 0.00 4.00
3496 4300 0.036875 CTCCCTGTTCAACCCCTGTC 59.963 60.000 0.00 0.00 0.00 3.51
3497 4301 1.074951 CCCTGTTCAACCCCTGTCC 59.925 63.158 0.00 0.00 0.00 4.02
3498 4302 1.427072 CCCTGTTCAACCCCTGTCCT 61.427 60.000 0.00 0.00 0.00 3.85
3499 4303 0.036875 CCTGTTCAACCCCTGTCCTC 59.963 60.000 0.00 0.00 0.00 3.71
3500 4304 0.036875 CTGTTCAACCCCTGTCCTCC 59.963 60.000 0.00 0.00 0.00 4.30
3501 4305 1.003718 GTTCAACCCCTGTCCTCCG 60.004 63.158 0.00 0.00 0.00 4.63
3502 4306 1.152204 TTCAACCCCTGTCCTCCGA 60.152 57.895 0.00 0.00 0.00 4.55
3503 4307 1.477685 TTCAACCCCTGTCCTCCGAC 61.478 60.000 0.00 0.00 39.66 4.79
3504 4308 2.606826 AACCCCTGTCCTCCGACC 60.607 66.667 0.00 0.00 38.32 4.79
3522 4326 4.564110 GCCCCGCCAGGTACCATC 62.564 72.222 15.94 1.15 35.12 3.51
3523 4327 2.768344 CCCCGCCAGGTACCATCT 60.768 66.667 15.94 0.00 35.12 2.90
3524 4328 2.505982 CCCGCCAGGTACCATCTG 59.494 66.667 15.94 3.41 35.12 2.90
3525 4329 2.203070 CCGCCAGGTACCATCTGC 60.203 66.667 15.94 9.61 0.00 4.26
3526 4330 2.735772 CCGCCAGGTACCATCTGCT 61.736 63.158 15.94 0.00 0.00 4.24
3527 4331 1.399744 CCGCCAGGTACCATCTGCTA 61.400 60.000 15.94 0.00 0.00 3.49
3528 4332 0.249489 CGCCAGGTACCATCTGCTAC 60.249 60.000 15.94 0.00 0.00 3.58
3529 4333 1.123928 GCCAGGTACCATCTGCTACT 58.876 55.000 15.94 0.00 0.00 2.57
3530 4334 1.202580 GCCAGGTACCATCTGCTACTG 60.203 57.143 15.94 0.00 0.00 2.74
3531 4335 1.202580 CCAGGTACCATCTGCTACTGC 60.203 57.143 15.94 0.00 40.20 4.40
3532 4336 1.759445 CAGGTACCATCTGCTACTGCT 59.241 52.381 15.94 0.00 40.48 4.24
3533 4337 2.959030 CAGGTACCATCTGCTACTGCTA 59.041 50.000 15.94 0.00 40.48 3.49
3534 4338 3.576118 CAGGTACCATCTGCTACTGCTAT 59.424 47.826 15.94 0.00 40.48 2.97
3535 4339 4.767409 CAGGTACCATCTGCTACTGCTATA 59.233 45.833 15.94 0.00 40.48 1.31
3536 4340 4.767928 AGGTACCATCTGCTACTGCTATAC 59.232 45.833 15.94 0.00 40.48 1.47
3537 4341 4.767928 GGTACCATCTGCTACTGCTATACT 59.232 45.833 7.15 0.00 40.48 2.12
3538 4342 5.106078 GGTACCATCTGCTACTGCTATACTC 60.106 48.000 7.15 0.00 40.48 2.59
3539 4343 4.474394 ACCATCTGCTACTGCTATACTCA 58.526 43.478 0.00 0.00 40.48 3.41
3540 4344 4.279671 ACCATCTGCTACTGCTATACTCAC 59.720 45.833 0.00 0.00 40.48 3.51
3541 4345 4.321601 CCATCTGCTACTGCTATACTCACC 60.322 50.000 0.00 0.00 40.48 4.02
3542 4346 3.898482 TCTGCTACTGCTATACTCACCA 58.102 45.455 0.00 0.00 40.48 4.17
3543 4347 4.474394 TCTGCTACTGCTATACTCACCAT 58.526 43.478 0.00 0.00 40.48 3.55
3544 4348 4.279420 TCTGCTACTGCTATACTCACCATG 59.721 45.833 0.00 0.00 40.48 3.66
3545 4349 4.215109 TGCTACTGCTATACTCACCATGA 58.785 43.478 0.00 0.00 40.48 3.07
3546 4350 4.038042 TGCTACTGCTATACTCACCATGAC 59.962 45.833 0.00 0.00 40.48 3.06
3547 4351 4.559704 GCTACTGCTATACTCACCATGACC 60.560 50.000 0.00 0.00 36.03 4.02
3548 4352 2.362397 ACTGCTATACTCACCATGACCG 59.638 50.000 0.00 0.00 0.00 4.79
3549 4353 2.623416 CTGCTATACTCACCATGACCGA 59.377 50.000 0.00 0.00 0.00 4.69
3550 4354 2.361119 TGCTATACTCACCATGACCGAC 59.639 50.000 0.00 0.00 0.00 4.79
3551 4355 2.361119 GCTATACTCACCATGACCGACA 59.639 50.000 0.00 0.00 0.00 4.35
3552 4356 3.181479 GCTATACTCACCATGACCGACAA 60.181 47.826 0.00 0.00 0.00 3.18
3553 4357 2.736144 TACTCACCATGACCGACAAC 57.264 50.000 0.00 0.00 0.00 3.32
3554 4358 1.048601 ACTCACCATGACCGACAACT 58.951 50.000 0.00 0.00 0.00 3.16
3555 4359 2.244695 ACTCACCATGACCGACAACTA 58.755 47.619 0.00 0.00 0.00 2.24
3556 4360 2.832129 ACTCACCATGACCGACAACTAT 59.168 45.455 0.00 0.00 0.00 2.12
3557 4361 3.260884 ACTCACCATGACCGACAACTATT 59.739 43.478 0.00 0.00 0.00 1.73
3558 4362 3.857052 TCACCATGACCGACAACTATTC 58.143 45.455 0.00 0.00 0.00 1.75
3559 4363 2.603110 CACCATGACCGACAACTATTCG 59.397 50.000 0.00 0.00 36.20 3.34
3560 4364 2.494471 ACCATGACCGACAACTATTCGA 59.506 45.455 0.00 0.00 38.85 3.71
3561 4365 3.132289 ACCATGACCGACAACTATTCGAT 59.868 43.478 0.00 0.00 38.85 3.59
3562 4366 3.490896 CCATGACCGACAACTATTCGATG 59.509 47.826 0.00 0.00 38.85 3.84
3563 4367 4.359706 CATGACCGACAACTATTCGATGA 58.640 43.478 0.00 0.00 38.85 2.92
3564 4368 4.443913 TGACCGACAACTATTCGATGAA 57.556 40.909 0.00 0.00 38.85 2.57
3565 4369 5.006153 TGACCGACAACTATTCGATGAAT 57.994 39.130 0.00 0.00 38.85 2.57
3566 4370 5.416083 TGACCGACAACTATTCGATGAATT 58.584 37.500 0.00 0.00 38.85 2.17
3567 4371 5.290885 TGACCGACAACTATTCGATGAATTG 59.709 40.000 0.00 0.00 38.85 2.32
3568 4372 5.175859 ACCGACAACTATTCGATGAATTGT 58.824 37.500 5.60 5.60 39.00 2.71
3569 4373 5.291128 ACCGACAACTATTCGATGAATTGTC 59.709 40.000 16.92 16.92 37.11 3.18
3570 4374 5.415366 CGACAACTATTCGATGAATTGTCG 58.585 41.667 26.57 26.57 45.35 4.35
3571 4375 5.554510 CGACAACTATTCGATGAATTGTCGG 60.555 44.000 29.09 18.89 46.01 4.79
3572 4376 5.416083 ACAACTATTCGATGAATTGTCGGA 58.584 37.500 6.99 2.36 37.11 4.55
3573 4377 5.520288 ACAACTATTCGATGAATTGTCGGAG 59.480 40.000 6.99 7.46 37.11 4.63
3574 4378 4.051922 ACTATTCGATGAATTGTCGGAGC 58.948 43.478 9.25 0.00 34.12 4.70
3575 4379 2.672961 TTCGATGAATTGTCGGAGCT 57.327 45.000 9.25 0.00 39.45 4.09
3576 4380 3.793797 TTCGATGAATTGTCGGAGCTA 57.206 42.857 9.25 0.00 39.45 3.32
3577 4381 3.793797 TCGATGAATTGTCGGAGCTAA 57.206 42.857 9.25 0.00 39.45 3.09
3578 4382 4.118093 TCGATGAATTGTCGGAGCTAAA 57.882 40.909 9.25 0.00 39.45 1.85
3579 4383 4.500127 TCGATGAATTGTCGGAGCTAAAA 58.500 39.130 9.25 0.00 39.45 1.52
3580 4384 4.932799 TCGATGAATTGTCGGAGCTAAAAA 59.067 37.500 9.25 0.00 39.45 1.94
3601 4405 7.418337 AAAAAGTTTTCCCTTCTTTCTAGCA 57.582 32.000 0.32 0.00 32.09 3.49
3602 4406 7.418337 AAAAGTTTTCCCTTCTTTCTAGCAA 57.582 32.000 0.00 0.00 32.09 3.91
3603 4407 7.603180 AAAGTTTTCCCTTCTTTCTAGCAAT 57.397 32.000 0.00 0.00 0.00 3.56
3604 4408 8.706322 AAAGTTTTCCCTTCTTTCTAGCAATA 57.294 30.769 0.00 0.00 0.00 1.90
3605 4409 7.929941 AGTTTTCCCTTCTTTCTAGCAATAG 57.070 36.000 0.00 0.00 0.00 1.73
3606 4410 7.690256 AGTTTTCCCTTCTTTCTAGCAATAGA 58.310 34.615 0.00 0.00 0.00 1.98
3607 4411 8.332487 AGTTTTCCCTTCTTTCTAGCAATAGAT 58.668 33.333 0.00 0.00 0.00 1.98
3608 4412 8.961634 GTTTTCCCTTCTTTCTAGCAATAGATT 58.038 33.333 0.00 0.00 0.00 2.40
3609 4413 8.738645 TTTCCCTTCTTTCTAGCAATAGATTC 57.261 34.615 0.00 0.00 0.00 2.52
3610 4414 7.682787 TCCCTTCTTTCTAGCAATAGATTCT 57.317 36.000 0.00 0.00 0.00 2.40
3611 4415 7.504403 TCCCTTCTTTCTAGCAATAGATTCTG 58.496 38.462 0.00 0.00 0.00 3.02
3612 4416 7.345653 TCCCTTCTTTCTAGCAATAGATTCTGA 59.654 37.037 0.00 0.00 0.00 3.27
3613 4417 8.156165 CCCTTCTTTCTAGCAATAGATTCTGAT 58.844 37.037 0.00 0.00 0.00 2.90
3614 4418 9.558396 CCTTCTTTCTAGCAATAGATTCTGATT 57.442 33.333 0.00 0.00 0.00 2.57
3620 4424 9.896645 TTCTAGCAATAGATTCTGATTTGAAGT 57.103 29.630 0.00 0.00 0.00 3.01
3624 4428 9.624373 AGCAATAGATTCTGATTTGAAGTACAT 57.376 29.630 0.00 0.00 0.00 2.29
3634 4438 9.481340 TCTGATTTGAAGTACATATATCAGCAC 57.519 33.333 14.82 0.00 38.14 4.40
3635 4439 9.486497 CTGATTTGAAGTACATATATCAGCACT 57.514 33.333 0.00 0.00 35.12 4.40
3641 4445 9.696917 TGAAGTACATATATCAGCACTATGTTG 57.303 33.333 0.00 0.00 37.32 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.984190 GTCCCCTAAATATAAGTCTTTGTAGAG 57.016 37.037 0.00 0.00 0.00 2.43
8 9 9.725206 AGTCCCCTAAATATAAGTCTTTGTAGA 57.275 33.333 0.00 0.00 0.00 2.59
83 84 4.026052 ACTTGCATGCCCTTAATTTAGCT 58.974 39.130 16.68 0.00 0.00 3.32
84 85 4.114794 CACTTGCATGCCCTTAATTTAGC 58.885 43.478 16.68 0.00 0.00 3.09
123 538 4.996758 GGTTCCATTCCAAATTTGTTCCAG 59.003 41.667 16.73 1.52 0.00 3.86
129 544 3.987220 GTGTCGGTTCCATTCCAAATTTG 59.013 43.478 11.40 11.40 0.00 2.32
147 562 9.825972 ATAATAATGCTAATTAATGTGCGTGTC 57.174 29.630 7.98 0.00 32.06 3.67
176 591 3.858247 ACGTGCAGGTAGATAAGGAAAC 58.142 45.455 10.95 0.00 0.00 2.78
185 600 3.682858 GCTTCATTAAACGTGCAGGTAGA 59.317 43.478 13.22 0.60 0.00 2.59
186 601 3.435327 TGCTTCATTAAACGTGCAGGTAG 59.565 43.478 13.22 5.70 0.00 3.18
190 605 7.510428 AATTATTGCTTCATTAAACGTGCAG 57.490 32.000 0.00 0.00 0.00 4.41
236 651 9.284968 TCTAAGGCTAATATGGACTTAATTTGC 57.715 33.333 5.96 0.00 34.37 3.68
261 676 6.740905 CGCTATTACAAGAGATCGAGATTCTC 59.259 42.308 6.43 6.43 0.00 2.87
268 683 4.135306 ACCTCGCTATTACAAGAGATCGA 58.865 43.478 0.00 0.00 32.84 3.59
269 684 4.491234 ACCTCGCTATTACAAGAGATCG 57.509 45.455 0.00 0.00 32.84 3.69
270 685 7.040961 ACTCTTACCTCGCTATTACAAGAGATC 60.041 40.741 13.68 0.00 39.78 2.75
271 686 6.773685 ACTCTTACCTCGCTATTACAAGAGAT 59.226 38.462 13.68 0.00 39.78 2.75
272 687 6.120905 ACTCTTACCTCGCTATTACAAGAGA 58.879 40.000 13.68 0.00 39.78 3.10
273 688 6.380095 ACTCTTACCTCGCTATTACAAGAG 57.620 41.667 6.84 6.84 41.95 2.85
274 689 7.870509 TTACTCTTACCTCGCTATTACAAGA 57.129 36.000 0.00 0.00 0.00 3.02
282 697 5.936956 GGCTAGTATTACTCTTACCTCGCTA 59.063 44.000 0.00 0.00 0.00 4.26
283 698 4.761227 GGCTAGTATTACTCTTACCTCGCT 59.239 45.833 0.00 0.00 0.00 4.93
284 699 4.518211 TGGCTAGTATTACTCTTACCTCGC 59.482 45.833 0.00 0.00 0.00 5.03
285 700 6.402334 CGATGGCTAGTATTACTCTTACCTCG 60.402 46.154 0.00 5.97 0.00 4.63
286 701 6.127952 CCGATGGCTAGTATTACTCTTACCTC 60.128 46.154 0.00 0.00 0.00 3.85
287 702 5.711036 CCGATGGCTAGTATTACTCTTACCT 59.289 44.000 0.00 0.00 0.00 3.08
328 746 2.639065 TGGTCCAAATTGATACGAGCC 58.361 47.619 0.00 0.00 0.00 4.70
333 751 5.343249 GCAACAGATGGTCCAAATTGATAC 58.657 41.667 0.00 0.00 0.00 2.24
407 843 2.156310 GGACATTGTTGACGTACGTTCC 59.844 50.000 23.70 18.01 0.00 3.62
429 865 0.171455 CTTCGCCGTTCTAGAGTGCT 59.829 55.000 0.00 0.00 0.00 4.40
435 871 0.100861 GGTCCTCTTCGCCGTTCTAG 59.899 60.000 0.00 0.00 0.00 2.43
444 880 2.205074 CGAAATGATGGGTCCTCTTCG 58.795 52.381 0.00 0.00 0.00 3.79
445 881 2.939103 CACGAAATGATGGGTCCTCTTC 59.061 50.000 0.00 0.00 0.00 2.87
447 883 1.210478 CCACGAAATGATGGGTCCTCT 59.790 52.381 0.00 0.00 31.83 3.69
451 887 3.261981 AGTACCACGAAATGATGGGTC 57.738 47.619 0.00 0.00 40.59 4.46
489 1051 2.706339 TAGAGAGAGTGGTACCCGTC 57.294 55.000 10.07 5.94 0.00 4.79
503 1065 9.582431 CGTAGATCTTTGGTGTTTTTATAGAGA 57.418 33.333 0.00 0.00 0.00 3.10
587 1153 3.089784 CATGACCGTGTAAGGCGC 58.910 61.111 0.00 0.00 33.69 6.53
671 1243 2.185608 GCTCTCCAGGAAGGTCGC 59.814 66.667 0.00 0.00 39.02 5.19
694 1266 4.493747 CCGGTCGCGAGGGTCTTC 62.494 72.222 10.24 0.00 0.00 2.87
737 1309 2.032681 GAAGCTGCTGTCGGGGTT 59.967 61.111 1.35 0.00 0.00 4.11
742 1314 2.357881 TGCCTGAAGCTGCTGTCG 60.358 61.111 1.35 0.00 44.23 4.35
1086 1659 2.215942 TCAAGAGGGTCGATCAGTCA 57.784 50.000 0.00 0.00 0.00 3.41
1088 1661 4.023980 TGTAATCAAGAGGGTCGATCAGT 58.976 43.478 0.00 0.00 0.00 3.41
1089 1662 4.142160 TGTGTAATCAAGAGGGTCGATCAG 60.142 45.833 0.00 0.00 0.00 2.90
1090 1663 3.767131 TGTGTAATCAAGAGGGTCGATCA 59.233 43.478 0.00 0.00 0.00 2.92
1091 1664 4.386867 TGTGTAATCAAGAGGGTCGATC 57.613 45.455 0.00 0.00 0.00 3.69
1111 1686 2.691522 CGTCGCGCATGAGAGTTG 59.308 61.111 8.75 0.00 0.00 3.16
1139 1714 9.976511 TGTGTACATATAACAGCTTATACCTTC 57.023 33.333 0.00 0.00 29.31 3.46
1155 1730 4.371786 CCACTGCGAAGATGTGTACATAT 58.628 43.478 4.58 4.58 36.57 1.78
1162 1752 0.592637 TTTGCCACTGCGAAGATGTG 59.407 50.000 0.00 0.00 41.78 3.21
1286 1891 0.250640 CAGCCAGTTGAGCAGGAAGT 60.251 55.000 0.00 0.00 0.00 3.01
1332 1937 1.437986 GCCGGCGATGTAGAAGTCT 59.562 57.895 12.58 0.00 0.00 3.24
1475 2093 3.690475 TGATGTCATCAGTGCTGAACT 57.310 42.857 11.62 0.00 43.58 3.01
1477 2095 3.692593 CCATTGATGTCATCAGTGCTGAA 59.307 43.478 25.41 7.92 43.29 3.02
1480 2098 2.022195 GCCATTGATGTCATCAGTGCT 58.978 47.619 25.41 7.77 43.29 4.40
1482 2100 5.333875 CGATTAGCCATTGATGTCATCAGTG 60.334 44.000 24.37 24.37 43.97 3.66
1484 2102 4.153655 CCGATTAGCCATTGATGTCATCAG 59.846 45.833 14.98 5.98 40.94 2.90
1490 2108 1.494721 ACCCCGATTAGCCATTGATGT 59.505 47.619 0.00 0.00 0.00 3.06
1495 2113 2.714250 TGGATAACCCCGATTAGCCATT 59.286 45.455 6.86 0.00 43.87 3.16
1496 2114 2.344592 TGGATAACCCCGATTAGCCAT 58.655 47.619 6.86 0.00 43.87 4.40
1641 2269 2.282180 GCTTTGCCCTCCAACCGA 60.282 61.111 0.00 0.00 31.97 4.69
1676 2304 2.027625 GTTCTGACGGACGCCTTGG 61.028 63.158 0.00 0.00 0.00 3.61
1677 2305 2.027625 GGTTCTGACGGACGCCTTG 61.028 63.158 0.00 0.00 0.00 3.61
1678 2306 2.342648 GGTTCTGACGGACGCCTT 59.657 61.111 0.00 0.00 0.00 4.35
1687 2315 1.234821 TCAATGTTGCCGGTTCTGAC 58.765 50.000 1.90 0.00 0.00 3.51
1699 2327 6.455113 GCGTAGATGTTGTAACGATCAATGTT 60.455 38.462 0.00 0.00 37.53 2.71
1756 2384 2.438800 ACGTAGCTACTGGAGTGGAT 57.561 50.000 21.20 0.00 0.00 3.41
1787 2430 5.300034 TGAGATTTTTGAAAGAGCAAGAGCA 59.700 36.000 0.00 0.00 45.49 4.26
1794 2437 5.706916 TGCAGATGAGATTTTTGAAAGAGC 58.293 37.500 0.00 0.00 0.00 4.09
1801 2444 5.026462 CGCTAACTGCAGATGAGATTTTTG 58.974 41.667 23.35 3.66 43.06 2.44
1803 2446 3.064545 GCGCTAACTGCAGATGAGATTTT 59.935 43.478 23.35 3.76 43.06 1.82
1814 2457 1.939934 GATATGTTGGCGCTAACTGCA 59.060 47.619 32.31 19.56 43.06 4.41
1815 2458 1.264288 GGATATGTTGGCGCTAACTGC 59.736 52.381 32.31 17.27 38.57 4.40
1816 2459 1.873591 GGGATATGTTGGCGCTAACTG 59.126 52.381 32.31 0.00 0.00 3.16
1817 2460 1.488812 TGGGATATGTTGGCGCTAACT 59.511 47.619 32.31 21.44 0.00 2.24
1835 2478 2.035632 GTACCTCCTCTGGTCTGATGG 58.964 57.143 0.00 0.00 41.22 3.51
1884 2534 1.195115 TAGCCTGCTAACTGTCCCAG 58.805 55.000 0.00 0.00 37.52 4.45
1920 2570 2.096980 TGAAGTAGGCGTCGACATAGTG 59.903 50.000 17.16 0.00 0.00 2.74
1964 2614 0.522626 TGTTGGTTCGAGCATGCATG 59.477 50.000 22.70 22.70 0.00 4.06
2048 2698 3.253432 CAGAACAAGGTGGGCTTAGAAAC 59.747 47.826 0.00 0.00 0.00 2.78
2054 2729 1.064017 TGAACAGAACAAGGTGGGCTT 60.064 47.619 0.00 0.00 0.00 4.35
2092 2848 0.249573 CATGGAAATTGGGGCATCGC 60.250 55.000 0.00 0.00 0.00 4.58
2151 2907 4.775780 TGTAAGTTACCTGTACAGCCAGAT 59.224 41.667 17.86 4.21 34.23 2.90
2189 2945 4.923893 TGTGTCTTTGAATGAACTGCAAG 58.076 39.130 0.00 0.00 42.29 4.01
2205 2961 9.918630 CCATTTATTTCTCTTCATTTTGTGTCT 57.081 29.630 0.00 0.00 0.00 3.41
2273 3041 0.109272 TCACCGCTGTCATCGAGTTC 60.109 55.000 0.00 0.00 0.00 3.01
2274 3042 0.388649 GTCACCGCTGTCATCGAGTT 60.389 55.000 0.00 0.00 0.00 3.01
2275 3043 1.213013 GTCACCGCTGTCATCGAGT 59.787 57.895 0.00 0.00 0.00 4.18
2317 3085 3.130160 ACGGAGTACCTCGTCGCC 61.130 66.667 5.43 0.00 41.94 5.54
2332 3100 3.111838 CGTCAGATTGAGATCCTTGACG 58.888 50.000 9.90 9.90 45.76 4.35
2354 3122 2.888998 GACGCCACGGGTTTGTGAC 61.889 63.158 0.00 0.00 42.55 3.67
2456 3244 7.696017 ACCTAGATTTTACCATACCACACTTT 58.304 34.615 0.00 0.00 0.00 2.66
2462 3250 6.126594 CCTCCAACCTAGATTTTACCATACCA 60.127 42.308 0.00 0.00 0.00 3.25
2463 3251 6.296803 CCTCCAACCTAGATTTTACCATACC 58.703 44.000 0.00 0.00 0.00 2.73
2464 3252 5.763698 GCCTCCAACCTAGATTTTACCATAC 59.236 44.000 0.00 0.00 0.00 2.39
2575 3363 5.309638 AGGAAGGAGTAGAAAAGAACAAGC 58.690 41.667 0.00 0.00 0.00 4.01
2626 3414 1.098050 ATGCTCAGGCGTTCAATTCC 58.902 50.000 0.00 0.00 42.25 3.01
2653 3441 7.553760 CCATATATGCTCACATAACCAGCAATA 59.446 37.037 7.24 0.00 45.99 1.90
2654 3442 6.376299 CCATATATGCTCACATAACCAGCAAT 59.624 38.462 7.24 0.00 45.99 3.56
2655 3443 5.706833 CCATATATGCTCACATAACCAGCAA 59.293 40.000 7.24 0.00 45.99 3.91
2663 3451 9.276590 CTGAAAACTTCCATATATGCTCACATA 57.723 33.333 7.24 0.00 42.85 2.29
2664 3452 7.255381 GCTGAAAACTTCCATATATGCTCACAT 60.255 37.037 7.24 0.00 40.49 3.21
2666 3454 6.433766 GCTGAAAACTTCCATATATGCTCAC 58.566 40.000 7.24 0.00 0.00 3.51
2668 3456 5.334414 CGGCTGAAAACTTCCATATATGCTC 60.334 44.000 7.24 0.00 0.00 4.26
2699 3490 6.170506 TGTAAATGGCTGGACTAGTAGTTTG 58.829 40.000 3.85 0.00 0.00 2.93
2751 3546 5.622346 ACTTCCCCAAGATCTAATCAGAC 57.378 43.478 0.00 0.00 31.00 3.51
2752 3547 5.966935 AGAACTTCCCCAAGATCTAATCAGA 59.033 40.000 0.00 0.00 39.39 3.27
2780 3575 3.302365 GGTTGAACACCAATCATGTGG 57.698 47.619 0.00 0.85 46.42 4.17
2853 3657 7.003648 CACTACGCGAATCACAATGTATTATG 58.996 38.462 15.93 0.00 0.00 1.90
2870 3674 2.991190 ACTTCATTTACCACACTACGCG 59.009 45.455 3.53 3.53 0.00 6.01
2887 3691 8.592998 CGGTTGATGACTACTGTATAAAACTTC 58.407 37.037 0.00 0.00 0.00 3.01
2899 3703 1.066143 CCTTGCCGGTTGATGACTACT 60.066 52.381 1.90 0.00 0.00 2.57
2900 3704 1.066430 TCCTTGCCGGTTGATGACTAC 60.066 52.381 1.90 0.00 0.00 2.73
2901 3705 1.271856 TCCTTGCCGGTTGATGACTA 58.728 50.000 1.90 0.00 0.00 2.59
2902 3706 0.620556 ATCCTTGCCGGTTGATGACT 59.379 50.000 1.90 0.00 0.00 3.41
2903 3707 1.463674 AATCCTTGCCGGTTGATGAC 58.536 50.000 1.90 0.00 0.00 3.06
2904 3708 2.214376 AAATCCTTGCCGGTTGATGA 57.786 45.000 1.90 0.00 0.00 2.92
2905 3709 3.181487 CCTAAAATCCTTGCCGGTTGATG 60.181 47.826 1.90 0.00 0.00 3.07
2906 3710 3.023832 CCTAAAATCCTTGCCGGTTGAT 58.976 45.455 1.90 0.00 0.00 2.57
2907 3711 2.442413 CCTAAAATCCTTGCCGGTTGA 58.558 47.619 1.90 0.00 0.00 3.18
2908 3712 1.476488 CCCTAAAATCCTTGCCGGTTG 59.524 52.381 1.90 0.00 0.00 3.77
2909 3713 1.847328 CCCTAAAATCCTTGCCGGTT 58.153 50.000 1.90 0.00 0.00 4.44
2910 3714 0.683179 GCCCTAAAATCCTTGCCGGT 60.683 55.000 1.90 0.00 0.00 5.28
2911 3715 0.682855 TGCCCTAAAATCCTTGCCGG 60.683 55.000 0.00 0.00 0.00 6.13
2912 3716 1.338020 GATGCCCTAAAATCCTTGCCG 59.662 52.381 0.00 0.00 0.00 5.69
2913 3717 2.625314 GAGATGCCCTAAAATCCTTGCC 59.375 50.000 0.00 0.00 0.00 4.52
2914 3718 2.625314 GGAGATGCCCTAAAATCCTTGC 59.375 50.000 0.00 0.00 0.00 4.01
2915 3719 3.902218 TGGAGATGCCCTAAAATCCTTG 58.098 45.455 0.00 0.00 34.97 3.61
2916 3720 4.540715 CTTGGAGATGCCCTAAAATCCTT 58.459 43.478 0.00 0.00 34.97 3.36
2917 3721 3.117360 CCTTGGAGATGCCCTAAAATCCT 60.117 47.826 0.00 0.00 34.97 3.24
2918 3722 3.225940 CCTTGGAGATGCCCTAAAATCC 58.774 50.000 0.00 0.00 34.97 3.01
2919 3723 2.625314 GCCTTGGAGATGCCCTAAAATC 59.375 50.000 0.00 0.00 34.97 2.17
2920 3724 2.670939 GCCTTGGAGATGCCCTAAAAT 58.329 47.619 0.00 0.00 34.97 1.82
2921 3725 1.681780 CGCCTTGGAGATGCCCTAAAA 60.682 52.381 0.00 0.00 34.97 1.52
2922 3726 0.107214 CGCCTTGGAGATGCCCTAAA 60.107 55.000 0.00 0.00 34.97 1.85
2923 3727 1.526887 CGCCTTGGAGATGCCCTAA 59.473 57.895 0.00 0.00 34.97 2.69
2924 3728 2.443394 CCGCCTTGGAGATGCCCTA 61.443 63.158 0.00 0.00 42.00 3.53
2925 3729 3.801997 CCGCCTTGGAGATGCCCT 61.802 66.667 0.00 0.00 42.00 5.19
2926 3730 3.797353 TCCGCCTTGGAGATGCCC 61.797 66.667 0.00 0.00 43.74 5.36
3372 4176 5.178797 CGAAGGCAATAGAGAAAGAAGGAA 58.821 41.667 0.00 0.00 0.00 3.36
3373 4177 4.759782 CGAAGGCAATAGAGAAAGAAGGA 58.240 43.478 0.00 0.00 0.00 3.36
3374 4178 3.311048 GCGAAGGCAATAGAGAAAGAAGG 59.689 47.826 0.00 0.00 39.62 3.46
3375 4179 4.528531 GCGAAGGCAATAGAGAAAGAAG 57.471 45.455 0.00 0.00 39.62 2.85
3390 4194 1.883084 GGTGATGTAGCGGCGAAGG 60.883 63.158 12.98 0.00 0.00 3.46
3391 4195 1.153647 TGGTGATGTAGCGGCGAAG 60.154 57.895 12.98 0.00 0.00 3.79
3392 4196 1.447140 GTGGTGATGTAGCGGCGAA 60.447 57.895 12.98 0.00 0.00 4.70
3393 4197 2.183300 GTGGTGATGTAGCGGCGA 59.817 61.111 12.98 0.00 0.00 5.54
3394 4198 2.890474 GGTGGTGATGTAGCGGCG 60.890 66.667 0.51 0.51 0.00 6.46
3395 4199 2.513897 GGGTGGTGATGTAGCGGC 60.514 66.667 0.00 0.00 0.00 6.53
3396 4200 2.189521 GGGGTGGTGATGTAGCGG 59.810 66.667 0.00 0.00 0.00 5.52
3397 4201 2.202878 CGGGGTGGTGATGTAGCG 60.203 66.667 0.00 0.00 0.00 4.26
3398 4202 2.513897 GCGGGGTGGTGATGTAGC 60.514 66.667 0.00 0.00 0.00 3.58
3399 4203 2.189521 GGCGGGGTGGTGATGTAG 59.810 66.667 0.00 0.00 0.00 2.74
3400 4204 3.776781 CGGCGGGGTGGTGATGTA 61.777 66.667 0.00 0.00 0.00 2.29
3408 4212 2.432300 ATAGAGTTCCGGCGGGGTG 61.432 63.158 27.98 0.00 37.00 4.61
3409 4213 2.042230 ATAGAGTTCCGGCGGGGT 60.042 61.111 27.98 10.99 37.00 4.95
3410 4214 2.365095 GACATAGAGTTCCGGCGGGG 62.365 65.000 27.98 0.32 37.02 5.73
3411 4215 1.067582 GACATAGAGTTCCGGCGGG 59.932 63.158 27.98 9.72 0.00 6.13
3412 4216 0.460311 AAGACATAGAGTTCCGGCGG 59.540 55.000 22.51 22.51 0.00 6.13
3413 4217 1.841450 GAAGACATAGAGTTCCGGCG 58.159 55.000 0.00 0.00 0.00 6.46
3414 4218 1.134560 ACGAAGACATAGAGTTCCGGC 59.865 52.381 0.00 0.00 0.00 6.13
3415 4219 3.505464 AACGAAGACATAGAGTTCCGG 57.495 47.619 0.00 0.00 0.00 5.14
3416 4220 4.096081 AGGTAACGAAGACATAGAGTTCCG 59.904 45.833 0.00 0.00 46.39 4.30
3417 4221 5.450274 GGAGGTAACGAAGACATAGAGTTCC 60.450 48.000 0.00 0.00 46.39 3.62
3418 4222 5.125097 TGGAGGTAACGAAGACATAGAGTTC 59.875 44.000 0.00 0.00 46.39 3.01
3419 4223 5.014858 TGGAGGTAACGAAGACATAGAGTT 58.985 41.667 0.00 0.00 46.39 3.01
3420 4224 4.597004 TGGAGGTAACGAAGACATAGAGT 58.403 43.478 0.00 0.00 46.39 3.24
3421 4225 5.341617 GTTGGAGGTAACGAAGACATAGAG 58.658 45.833 0.00 0.00 46.39 2.43
3422 4226 5.320549 GTTGGAGGTAACGAAGACATAGA 57.679 43.478 0.00 0.00 46.39 1.98
3433 4237 2.414138 CGGATGAAACGTTGGAGGTAAC 59.586 50.000 0.00 0.00 0.00 2.50
3434 4238 2.613474 CCGGATGAAACGTTGGAGGTAA 60.613 50.000 0.00 0.00 0.00 2.85
3435 4239 1.066716 CCGGATGAAACGTTGGAGGTA 60.067 52.381 0.00 0.00 0.00 3.08
3436 4240 0.321298 CCGGATGAAACGTTGGAGGT 60.321 55.000 0.00 0.00 0.00 3.85
3437 4241 1.024579 CCCGGATGAAACGTTGGAGG 61.025 60.000 0.73 0.00 0.00 4.30
3438 4242 1.644786 GCCCGGATGAAACGTTGGAG 61.645 60.000 0.73 0.00 0.00 3.86
3439 4243 1.673009 GCCCGGATGAAACGTTGGA 60.673 57.895 0.73 0.00 0.00 3.53
3440 4244 1.644786 GAGCCCGGATGAAACGTTGG 61.645 60.000 0.73 0.00 0.00 3.77
3441 4245 1.644786 GGAGCCCGGATGAAACGTTG 61.645 60.000 0.73 0.00 0.00 4.10
3442 4246 1.376812 GGAGCCCGGATGAAACGTT 60.377 57.895 0.73 0.00 0.00 3.99
3443 4247 2.267961 GGAGCCCGGATGAAACGT 59.732 61.111 0.73 0.00 0.00 3.99
3444 4248 2.106683 GTGGAGCCCGGATGAAACG 61.107 63.158 0.73 0.00 0.00 3.60
3445 4249 1.749258 GGTGGAGCCCGGATGAAAC 60.749 63.158 0.73 0.00 0.00 2.78
3446 4250 2.674754 GGTGGAGCCCGGATGAAA 59.325 61.111 0.73 0.00 0.00 2.69
3455 4259 2.270527 GAGAAGCAGGGTGGAGCC 59.729 66.667 0.00 0.00 0.00 4.70
3456 4260 2.250741 GAGGAGAAGCAGGGTGGAGC 62.251 65.000 0.00 0.00 0.00 4.70
3457 4261 1.621672 GGAGGAGAAGCAGGGTGGAG 61.622 65.000 0.00 0.00 0.00 3.86
3458 4262 1.613630 GGAGGAGAAGCAGGGTGGA 60.614 63.158 0.00 0.00 0.00 4.02
3459 4263 2.674220 GGGAGGAGAAGCAGGGTGG 61.674 68.421 0.00 0.00 0.00 4.61
3460 4264 1.614824 AGGGAGGAGAAGCAGGGTG 60.615 63.158 0.00 0.00 0.00 4.61
3461 4265 1.306568 GAGGGAGGAGAAGCAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
3462 4266 2.069430 GGAGGGAGGAGAAGCAGGG 61.069 68.421 0.00 0.00 0.00 4.45
3463 4267 2.069430 GGGAGGGAGGAGAAGCAGG 61.069 68.421 0.00 0.00 0.00 4.85
3464 4268 1.002792 AGGGAGGGAGGAGAAGCAG 59.997 63.158 0.00 0.00 0.00 4.24
3465 4269 1.306482 CAGGGAGGGAGGAGAAGCA 60.306 63.158 0.00 0.00 0.00 3.91
3466 4270 0.912006 AACAGGGAGGGAGGAGAAGC 60.912 60.000 0.00 0.00 0.00 3.86
3467 4271 1.199615 GAACAGGGAGGGAGGAGAAG 58.800 60.000 0.00 0.00 0.00 2.85
3468 4272 0.491823 TGAACAGGGAGGGAGGAGAA 59.508 55.000 0.00 0.00 0.00 2.87
3469 4273 0.491823 TTGAACAGGGAGGGAGGAGA 59.508 55.000 0.00 0.00 0.00 3.71
3470 4274 0.615850 GTTGAACAGGGAGGGAGGAG 59.384 60.000 0.00 0.00 0.00 3.69
3471 4275 0.840722 GGTTGAACAGGGAGGGAGGA 60.841 60.000 0.00 0.00 0.00 3.71
3472 4276 1.685820 GGTTGAACAGGGAGGGAGG 59.314 63.158 0.00 0.00 0.00 4.30
3473 4277 1.685820 GGGTTGAACAGGGAGGGAG 59.314 63.158 0.00 0.00 0.00 4.30
3474 4278 1.850755 GGGGTTGAACAGGGAGGGA 60.851 63.158 0.00 0.00 0.00 4.20
3475 4279 1.852626 AGGGGTTGAACAGGGAGGG 60.853 63.158 0.00 0.00 0.00 4.30
3476 4280 1.380302 CAGGGGTTGAACAGGGAGG 59.620 63.158 0.00 0.00 0.00 4.30
3477 4281 0.036875 GACAGGGGTTGAACAGGGAG 59.963 60.000 0.00 0.00 0.00 4.30
3478 4282 1.423794 GGACAGGGGTTGAACAGGGA 61.424 60.000 0.00 0.00 0.00 4.20
3479 4283 1.074951 GGACAGGGGTTGAACAGGG 59.925 63.158 0.00 0.00 0.00 4.45
3480 4284 0.036875 GAGGACAGGGGTTGAACAGG 59.963 60.000 0.00 0.00 0.00 4.00
3481 4285 0.036875 GGAGGACAGGGGTTGAACAG 59.963 60.000 0.00 0.00 0.00 3.16
3482 4286 1.764571 CGGAGGACAGGGGTTGAACA 61.765 60.000 0.00 0.00 0.00 3.18
3483 4287 1.003718 CGGAGGACAGGGGTTGAAC 60.004 63.158 0.00 0.00 0.00 3.18
3484 4288 1.152204 TCGGAGGACAGGGGTTGAA 60.152 57.895 0.00 0.00 0.00 2.69
3485 4289 1.911766 GTCGGAGGACAGGGGTTGA 60.912 63.158 0.00 0.00 42.91 3.18
3486 4290 2.663196 GTCGGAGGACAGGGGTTG 59.337 66.667 0.00 0.00 42.91 3.77
3487 4291 2.606826 GGTCGGAGGACAGGGGTT 60.607 66.667 0.00 0.00 45.28 4.11
3505 4309 4.564110 GATGGTACCTGGCGGGGC 62.564 72.222 18.49 8.99 40.03 5.80
3506 4310 2.768344 AGATGGTACCTGGCGGGG 60.768 66.667 18.49 6.00 40.03 5.73
3507 4311 2.505982 CAGATGGTACCTGGCGGG 59.494 66.667 14.36 11.83 41.89 6.13
3508 4312 1.399744 TAGCAGATGGTACCTGGCGG 61.400 60.000 14.36 4.39 32.51 6.13
3509 4313 0.249489 GTAGCAGATGGTACCTGGCG 60.249 60.000 14.36 0.44 41.66 5.69
3510 4314 1.123928 AGTAGCAGATGGTACCTGGC 58.876 55.000 14.36 11.09 46.84 4.85
3511 4315 1.202580 GCAGTAGCAGATGGTACCTGG 60.203 57.143 14.36 9.26 46.84 4.45
3512 4316 1.759445 AGCAGTAGCAGATGGTACCTG 59.241 52.381 14.36 14.37 46.84 4.00
3513 4317 2.166907 AGCAGTAGCAGATGGTACCT 57.833 50.000 14.36 6.80 46.84 3.08
3514 4318 4.767928 AGTATAGCAGTAGCAGATGGTACC 59.232 45.833 16.36 4.43 46.84 3.34
3515 4319 5.473846 TGAGTATAGCAGTAGCAGATGGTAC 59.526 44.000 13.03 13.03 46.22 3.34
3516 4320 5.473846 GTGAGTATAGCAGTAGCAGATGGTA 59.526 44.000 0.00 0.00 45.49 3.25
3517 4321 4.279671 GTGAGTATAGCAGTAGCAGATGGT 59.720 45.833 0.00 0.00 45.49 3.55
3518 4322 4.321601 GGTGAGTATAGCAGTAGCAGATGG 60.322 50.000 0.00 0.00 45.49 3.51
3519 4323 4.279420 TGGTGAGTATAGCAGTAGCAGATG 59.721 45.833 0.00 0.00 45.49 2.90
3520 4324 4.474394 TGGTGAGTATAGCAGTAGCAGAT 58.526 43.478 0.00 0.00 45.49 2.90
3521 4325 3.898482 TGGTGAGTATAGCAGTAGCAGA 58.102 45.455 0.00 0.00 45.49 4.26
3522 4326 4.279420 TCATGGTGAGTATAGCAGTAGCAG 59.721 45.833 0.00 0.00 45.49 4.24
3523 4327 4.038042 GTCATGGTGAGTATAGCAGTAGCA 59.962 45.833 0.00 0.00 45.49 3.49
3524 4328 4.551388 GTCATGGTGAGTATAGCAGTAGC 58.449 47.826 0.00 0.00 42.56 3.58
3525 4329 4.320567 CGGTCATGGTGAGTATAGCAGTAG 60.321 50.000 0.00 0.00 0.00 2.57
3526 4330 3.568430 CGGTCATGGTGAGTATAGCAGTA 59.432 47.826 0.00 0.00 0.00 2.74
3527 4331 2.362397 CGGTCATGGTGAGTATAGCAGT 59.638 50.000 0.00 0.00 0.00 4.40
3528 4332 2.623416 TCGGTCATGGTGAGTATAGCAG 59.377 50.000 0.00 0.00 0.00 4.24
3529 4333 2.361119 GTCGGTCATGGTGAGTATAGCA 59.639 50.000 0.00 0.00 0.00 3.49
3530 4334 2.361119 TGTCGGTCATGGTGAGTATAGC 59.639 50.000 0.00 0.00 0.00 2.97
3531 4335 4.098044 AGTTGTCGGTCATGGTGAGTATAG 59.902 45.833 0.00 0.00 0.00 1.31
3532 4336 4.021229 AGTTGTCGGTCATGGTGAGTATA 58.979 43.478 0.00 0.00 0.00 1.47
3533 4337 2.832129 AGTTGTCGGTCATGGTGAGTAT 59.168 45.455 0.00 0.00 0.00 2.12
3534 4338 2.244695 AGTTGTCGGTCATGGTGAGTA 58.755 47.619 0.00 0.00 0.00 2.59
3535 4339 1.048601 AGTTGTCGGTCATGGTGAGT 58.951 50.000 0.00 0.00 0.00 3.41
3536 4340 3.526931 ATAGTTGTCGGTCATGGTGAG 57.473 47.619 0.00 0.00 0.00 3.51
3537 4341 3.674955 CGAATAGTTGTCGGTCATGGTGA 60.675 47.826 0.00 0.00 34.85 4.02
3538 4342 2.603110 CGAATAGTTGTCGGTCATGGTG 59.397 50.000 0.00 0.00 34.85 4.17
3539 4343 2.494471 TCGAATAGTTGTCGGTCATGGT 59.506 45.455 0.00 0.00 39.01 3.55
3540 4344 3.159353 TCGAATAGTTGTCGGTCATGG 57.841 47.619 0.00 0.00 39.01 3.66
3541 4345 4.359706 TCATCGAATAGTTGTCGGTCATG 58.640 43.478 0.00 0.00 39.01 3.07
3542 4346 4.649088 TCATCGAATAGTTGTCGGTCAT 57.351 40.909 0.00 0.00 39.01 3.06
3543 4347 4.443913 TTCATCGAATAGTTGTCGGTCA 57.556 40.909 0.00 0.00 39.01 4.02
3544 4348 5.291128 ACAATTCATCGAATAGTTGTCGGTC 59.709 40.000 5.71 0.00 39.01 4.79
3545 4349 5.175859 ACAATTCATCGAATAGTTGTCGGT 58.824 37.500 5.71 0.00 39.01 4.69
3546 4350 5.554510 CGACAATTCATCGAATAGTTGTCGG 60.555 44.000 31.25 21.41 46.69 4.79
3547 4351 5.415366 CGACAATTCATCGAATAGTTGTCG 58.585 41.667 28.94 28.94 46.08 4.35
3548 4352 5.518847 TCCGACAATTCATCGAATAGTTGTC 59.481 40.000 19.88 19.88 42.25 3.18
3549 4353 5.416083 TCCGACAATTCATCGAATAGTTGT 58.584 37.500 9.67 9.90 42.25 3.32
3550 4354 5.557136 GCTCCGACAATTCATCGAATAGTTG 60.557 44.000 9.67 0.00 42.25 3.16
3551 4355 4.508124 GCTCCGACAATTCATCGAATAGTT 59.492 41.667 9.67 0.00 42.25 2.24
3552 4356 4.051922 GCTCCGACAATTCATCGAATAGT 58.948 43.478 9.67 0.00 42.25 2.12
3553 4357 4.302455 AGCTCCGACAATTCATCGAATAG 58.698 43.478 9.67 5.98 42.25 1.73
3554 4358 4.322080 AGCTCCGACAATTCATCGAATA 57.678 40.909 9.67 0.00 42.25 1.75
3555 4359 3.185246 AGCTCCGACAATTCATCGAAT 57.815 42.857 9.67 0.00 42.25 3.34
3556 4360 2.672961 AGCTCCGACAATTCATCGAA 57.327 45.000 9.67 0.00 42.25 3.71
3557 4361 3.793797 TTAGCTCCGACAATTCATCGA 57.206 42.857 9.67 0.00 42.25 3.59
3558 4362 4.857871 TTTTAGCTCCGACAATTCATCG 57.142 40.909 0.00 2.27 39.33 3.84
3577 4381 7.418337 TGCTAGAAAGAAGGGAAAACTTTTT 57.582 32.000 0.00 0.00 34.63 1.94
3578 4382 7.418337 TTGCTAGAAAGAAGGGAAAACTTTT 57.582 32.000 0.00 0.00 34.63 2.27
3579 4383 7.603180 ATTGCTAGAAAGAAGGGAAAACTTT 57.397 32.000 0.00 0.00 36.71 2.66
3580 4384 8.164070 TCTATTGCTAGAAAGAAGGGAAAACTT 58.836 33.333 0.00 0.00 30.90 2.66
3581 4385 7.690256 TCTATTGCTAGAAAGAAGGGAAAACT 58.310 34.615 0.00 0.00 30.90 2.66
3582 4386 7.923414 TCTATTGCTAGAAAGAAGGGAAAAC 57.077 36.000 0.00 0.00 30.90 2.43
3583 4387 9.178758 GAATCTATTGCTAGAAAGAAGGGAAAA 57.821 33.333 0.00 0.00 37.52 2.29
3584 4388 8.552296 AGAATCTATTGCTAGAAAGAAGGGAAA 58.448 33.333 0.00 0.00 37.52 3.13
3585 4389 7.989741 CAGAATCTATTGCTAGAAAGAAGGGAA 59.010 37.037 0.00 0.00 37.52 3.97
3586 4390 7.345653 TCAGAATCTATTGCTAGAAAGAAGGGA 59.654 37.037 0.00 0.00 37.52 4.20
3587 4391 7.504403 TCAGAATCTATTGCTAGAAAGAAGGG 58.496 38.462 0.00 0.00 37.52 3.95
3588 4392 9.558396 AATCAGAATCTATTGCTAGAAAGAAGG 57.442 33.333 0.00 0.00 37.52 3.46
3594 4398 9.896645 ACTTCAAATCAGAATCTATTGCTAGAA 57.103 29.630 0.00 0.00 37.52 2.10
3598 4402 9.624373 ATGTACTTCAAATCAGAATCTATTGCT 57.376 29.630 0.00 0.00 0.00 3.91
3608 4412 9.481340 GTGCTGATATATGTACTTCAAATCAGA 57.519 33.333 20.52 10.56 40.40 3.27
3609 4413 9.486497 AGTGCTGATATATGTACTTCAAATCAG 57.514 33.333 16.02 16.02 40.62 2.90
3615 4419 9.696917 CAACATAGTGCTGATATATGTACTTCA 57.303 33.333 0.00 0.00 38.78 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.