Multiple sequence alignment - TraesCS3A01G137800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G137800 chr3A 100.000 3879 0 0 1 3879 114707005 114710883 0.000000e+00 7164.0
1 TraesCS3A01G137800 chr3A 99.511 614 1 2 3267 3879 114719845 114720457 0.000000e+00 1116.0
2 TraesCS3A01G137800 chr3D 91.877 2770 178 23 704 3442 97112284 97115037 0.000000e+00 3825.0
3 TraesCS3A01G137800 chr3D 85.981 428 35 8 318 741 97111877 97112283 5.950000e-118 435.0
4 TraesCS3A01G137800 chr3B 93.389 2526 156 6 704 3226 147930405 147932922 0.000000e+00 3729.0
5 TraesCS3A01G137800 chr3B 90.942 276 24 1 6 280 666144018 666143743 1.700000e-98 370.0
6 TraesCS3A01G137800 chr3B 85.970 335 32 7 422 741 147930070 147930404 1.030000e-90 344.0
7 TraesCS3A01G137800 chr3B 91.860 172 13 1 110 280 666148484 666148655 5.010000e-59 239.0
8 TraesCS3A01G137800 chr2A 97.500 400 4 2 3482 3879 674077635 674078030 0.000000e+00 678.0
9 TraesCS3A01G137800 chr2A 90.395 177 16 1 105 280 50436843 50437019 8.380000e-57 231.0
10 TraesCS3A01G137800 chr2A 86.667 75 8 2 3481 3554 75244063 75243990 8.930000e-12 82.4
11 TraesCS3A01G137800 chr4D 92.806 278 17 2 4 280 338383752 338383477 2.170000e-107 399.0
12 TraesCS3A01G137800 chr4D 89.139 267 25 3 3 268 444262399 444262136 2.890000e-86 329.0
13 TraesCS3A01G137800 chr4D 91.279 172 14 1 110 280 338385112 338385283 2.330000e-57 233.0
14 TraesCS3A01G137800 chr5B 92.473 279 20 1 3 280 534482253 534481975 7.810000e-107 398.0
15 TraesCS3A01G137800 chr6B 84.588 279 42 1 3 280 330283806 330283528 3.820000e-70 276.0
16 TraesCS3A01G137800 chr1B 83.333 276 41 5 8 280 49317628 49317901 2.310000e-62 250.0
17 TraesCS3A01G137800 chr1A 92.857 70 5 0 3485 3554 113939909 113939840 6.860000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G137800 chr3A 114707005 114710883 3878 False 7164.0 7164 100.0000 1 3879 1 chr3A.!!$F1 3878
1 TraesCS3A01G137800 chr3A 114719845 114720457 612 False 1116.0 1116 99.5110 3267 3879 1 chr3A.!!$F2 612
2 TraesCS3A01G137800 chr3D 97111877 97115037 3160 False 2130.0 3825 88.9290 318 3442 2 chr3D.!!$F1 3124
3 TraesCS3A01G137800 chr3B 147930070 147932922 2852 False 2036.5 3729 89.6795 422 3226 2 chr3B.!!$F2 2804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.035056 AAAACTCCAGGGAGATGCGG 60.035 55.0 21.73 0.00 44.53 5.69 F
355 356 0.097674 ACGATCGAACCGGAACTACG 59.902 55.0 24.34 9.27 0.00 3.51 F
1395 1452 0.316204 CAGGTGAACCGGTTAGTCGT 59.684 55.0 22.33 12.00 42.08 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1257 0.037326 TGAGCCTTAGCGTTGTCTGG 60.037 55.0 0.0 0.0 46.67 3.86 R
2265 2322 0.106819 ATGGTCATGGGCTTGCTCTC 60.107 55.0 0.0 0.0 0.00 3.20 R
3259 3342 0.318441 GCAGGTTTGGGAAAGCTTCC 59.682 55.0 0.0 2.7 46.23 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.802866 GGGATCTGAGTGGAGAAATGAC 58.197 50.000 0.00 0.00 0.00 3.06
22 23 3.454082 GGGATCTGAGTGGAGAAATGACT 59.546 47.826 0.00 0.00 0.00 3.41
23 24 4.440880 GGATCTGAGTGGAGAAATGACTG 58.559 47.826 0.00 0.00 0.00 3.51
24 25 4.081198 GGATCTGAGTGGAGAAATGACTGT 60.081 45.833 0.00 0.00 0.00 3.55
25 26 4.263018 TCTGAGTGGAGAAATGACTGTG 57.737 45.455 0.00 0.00 0.00 3.66
26 27 3.007290 TCTGAGTGGAGAAATGACTGTGG 59.993 47.826 0.00 0.00 0.00 4.17
27 28 2.079925 GAGTGGAGAAATGACTGTGGC 58.920 52.381 0.00 0.00 0.00 5.01
28 29 1.701847 AGTGGAGAAATGACTGTGGCT 59.298 47.619 0.00 0.00 0.00 4.75
29 30 2.906389 AGTGGAGAAATGACTGTGGCTA 59.094 45.455 0.00 0.00 0.00 3.93
30 31 3.055530 AGTGGAGAAATGACTGTGGCTAG 60.056 47.826 0.00 0.00 0.00 3.42
31 32 3.055819 GTGGAGAAATGACTGTGGCTAGA 60.056 47.826 0.00 0.00 0.00 2.43
32 33 3.196469 TGGAGAAATGACTGTGGCTAGAG 59.804 47.826 0.00 0.00 0.00 2.43
33 34 3.449018 GGAGAAATGACTGTGGCTAGAGA 59.551 47.826 0.00 0.00 0.00 3.10
34 35 4.081420 GGAGAAATGACTGTGGCTAGAGAA 60.081 45.833 0.00 0.00 0.00 2.87
35 36 5.083533 AGAAATGACTGTGGCTAGAGAAG 57.916 43.478 0.00 0.00 0.00 2.85
36 37 3.902881 AATGACTGTGGCTAGAGAAGG 57.097 47.619 0.00 0.00 0.00 3.46
55 56 3.334272 GGCAACTACATAAATGCGGTC 57.666 47.619 0.00 0.00 39.66 4.79
56 57 2.680841 GGCAACTACATAAATGCGGTCA 59.319 45.455 0.00 0.00 39.66 4.02
57 58 3.127895 GGCAACTACATAAATGCGGTCAA 59.872 43.478 0.00 0.00 39.66 3.18
58 59 4.202010 GGCAACTACATAAATGCGGTCAAT 60.202 41.667 0.00 0.00 39.66 2.57
59 60 5.339990 GCAACTACATAAATGCGGTCAATT 58.660 37.500 0.00 0.00 0.00 2.32
60 61 5.229887 GCAACTACATAAATGCGGTCAATTG 59.770 40.000 0.00 0.00 0.00 2.32
61 62 4.920376 ACTACATAAATGCGGTCAATTGC 58.080 39.130 0.00 0.00 0.00 3.56
62 63 3.865011 ACATAAATGCGGTCAATTGCA 57.135 38.095 0.00 0.00 46.51 4.08
63 64 4.185467 ACATAAATGCGGTCAATTGCAA 57.815 36.364 0.00 0.00 45.45 4.08
64 65 4.564041 ACATAAATGCGGTCAATTGCAAA 58.436 34.783 1.71 0.00 45.45 3.68
65 66 4.993584 ACATAAATGCGGTCAATTGCAAAA 59.006 33.333 1.71 0.00 45.45 2.44
66 67 5.120519 ACATAAATGCGGTCAATTGCAAAAG 59.879 36.000 1.71 0.00 45.45 2.27
67 68 3.383620 AATGCGGTCAATTGCAAAAGA 57.616 38.095 1.71 0.99 45.45 2.52
68 69 3.598019 ATGCGGTCAATTGCAAAAGAT 57.402 38.095 1.71 0.00 45.45 2.40
69 70 2.945278 TGCGGTCAATTGCAAAAGATC 58.055 42.857 1.71 3.83 38.34 2.75
70 71 2.557924 TGCGGTCAATTGCAAAAGATCT 59.442 40.909 1.71 0.00 38.34 2.75
71 72 3.174375 GCGGTCAATTGCAAAAGATCTC 58.826 45.455 1.71 0.00 0.00 2.75
72 73 3.366273 GCGGTCAATTGCAAAAGATCTCA 60.366 43.478 1.71 0.00 0.00 3.27
73 74 4.797471 CGGTCAATTGCAAAAGATCTCAA 58.203 39.130 1.71 0.00 0.00 3.02
74 75 4.618489 CGGTCAATTGCAAAAGATCTCAAC 59.382 41.667 1.71 0.00 0.00 3.18
75 76 4.925646 GGTCAATTGCAAAAGATCTCAACC 59.074 41.667 1.71 0.00 0.00 3.77
76 77 4.618489 GTCAATTGCAAAAGATCTCAACCG 59.382 41.667 1.71 0.00 0.00 4.44
77 78 2.704725 TTGCAAAAGATCTCAACCGC 57.295 45.000 0.00 0.00 0.00 5.68
78 79 0.881118 TGCAAAAGATCTCAACCGCC 59.119 50.000 0.00 0.00 0.00 6.13
79 80 0.881118 GCAAAAGATCTCAACCGCCA 59.119 50.000 0.00 0.00 0.00 5.69
80 81 1.269448 GCAAAAGATCTCAACCGCCAA 59.731 47.619 0.00 0.00 0.00 4.52
81 82 2.922335 GCAAAAGATCTCAACCGCCAAC 60.922 50.000 0.00 0.00 0.00 3.77
82 83 1.156736 AAAGATCTCAACCGCCAACG 58.843 50.000 0.00 0.00 39.67 4.10
93 94 2.750237 GCCAACGGCGGGAAATCT 60.750 61.111 13.24 0.00 39.62 2.40
94 95 2.340328 GCCAACGGCGGGAAATCTT 61.340 57.895 13.24 0.00 39.62 2.40
95 96 1.800681 CCAACGGCGGGAAATCTTC 59.199 57.895 13.24 0.00 0.00 2.87
104 105 1.794222 GGAAATCTTCCGCCACACG 59.206 57.895 0.00 0.00 40.59 4.49
105 106 1.134694 GAAATCTTCCGCCACACGC 59.865 57.895 0.00 0.00 41.76 5.34
106 107 2.253414 GAAATCTTCCGCCACACGCC 62.253 60.000 0.00 0.00 41.76 5.68
107 108 4.778143 ATCTTCCGCCACACGCCC 62.778 66.667 0.00 0.00 41.76 6.13
116 117 4.704833 CACACGCCCTGGGTCCAG 62.705 72.222 15.56 9.94 43.26 3.86
124 125 2.282462 CTGGGTCCAGGTGGCAAC 60.282 66.667 9.08 0.00 40.17 4.17
125 126 4.263572 TGGGTCCAGGTGGCAACG 62.264 66.667 0.00 0.00 42.51 4.10
127 128 4.265056 GGTCCAGGTGGCAACGGT 62.265 66.667 12.04 0.00 42.51 4.83
128 129 2.668550 GTCCAGGTGGCAACGGTC 60.669 66.667 12.04 4.53 42.51 4.79
129 130 3.948719 TCCAGGTGGCAACGGTCC 61.949 66.667 12.04 0.00 42.51 4.46
130 131 4.263572 CCAGGTGGCAACGGTCCA 62.264 66.667 1.20 0.00 42.51 4.02
131 132 2.669569 CAGGTGGCAACGGTCCAG 60.670 66.667 0.00 0.00 42.51 3.86
132 133 2.847234 AGGTGGCAACGGTCCAGA 60.847 61.111 0.00 0.00 42.51 3.86
133 134 2.668550 GGTGGCAACGGTCCAGAC 60.669 66.667 0.00 0.00 42.51 3.51
134 135 3.041940 GTGGCAACGGTCCAGACG 61.042 66.667 0.00 0.00 42.51 4.18
135 136 4.980805 TGGCAACGGTCCAGACGC 62.981 66.667 0.00 0.00 42.51 5.19
150 151 4.680237 CGCCCGTCTGCCAGTCAA 62.680 66.667 0.00 0.00 0.00 3.18
151 152 2.045926 GCCCGTCTGCCAGTCAAT 60.046 61.111 0.00 0.00 0.00 2.57
152 153 2.401766 GCCCGTCTGCCAGTCAATG 61.402 63.158 0.00 0.00 0.00 2.82
153 154 2.401766 CCCGTCTGCCAGTCAATGC 61.402 63.158 0.00 0.00 0.00 3.56
154 155 1.672030 CCGTCTGCCAGTCAATGCA 60.672 57.895 0.00 0.00 35.86 3.96
158 159 3.057548 TGCCAGTCAATGCAGCCG 61.058 61.111 0.00 0.00 32.77 5.52
159 160 4.487412 GCCAGTCAATGCAGCCGC 62.487 66.667 0.00 0.00 39.24 6.53
168 169 3.218470 TGCAGCCGCAGCAAGTTT 61.218 55.556 8.15 0.00 45.36 2.66
169 170 2.732094 GCAGCCGCAGCAAGTTTG 60.732 61.111 2.39 0.00 43.56 2.93
170 171 2.049802 CAGCCGCAGCAAGTTTGG 60.050 61.111 0.00 0.00 43.56 3.28
171 172 3.297620 AGCCGCAGCAAGTTTGGG 61.298 61.111 0.00 0.00 43.56 4.12
172 173 3.294493 GCCGCAGCAAGTTTGGGA 61.294 61.111 0.00 0.00 39.53 4.37
173 174 2.639327 GCCGCAGCAAGTTTGGGAT 61.639 57.895 0.00 0.00 39.53 3.85
174 175 1.508088 CCGCAGCAAGTTTGGGATC 59.492 57.895 0.00 0.00 0.00 3.36
175 176 0.962356 CCGCAGCAAGTTTGGGATCT 60.962 55.000 0.00 0.00 0.00 2.75
176 177 0.169672 CGCAGCAAGTTTGGGATCTG 59.830 55.000 0.00 0.00 0.00 2.90
177 178 0.529378 GCAGCAAGTTTGGGATCTGG 59.471 55.000 0.00 0.00 0.00 3.86
178 179 1.180029 CAGCAAGTTTGGGATCTGGG 58.820 55.000 0.00 0.00 0.00 4.45
179 180 0.779997 AGCAAGTTTGGGATCTGGGT 59.220 50.000 0.00 0.00 0.00 4.51
180 181 1.147817 AGCAAGTTTGGGATCTGGGTT 59.852 47.619 0.00 0.00 0.00 4.11
181 182 1.273327 GCAAGTTTGGGATCTGGGTTG 59.727 52.381 0.00 0.00 0.00 3.77
182 183 2.597455 CAAGTTTGGGATCTGGGTTGT 58.403 47.619 0.00 0.00 0.00 3.32
183 184 3.761897 CAAGTTTGGGATCTGGGTTGTA 58.238 45.455 0.00 0.00 0.00 2.41
184 185 3.434940 AGTTTGGGATCTGGGTTGTAC 57.565 47.619 0.00 0.00 0.00 2.90
185 186 2.081462 GTTTGGGATCTGGGTTGTACG 58.919 52.381 0.00 0.00 0.00 3.67
186 187 0.035820 TTGGGATCTGGGTTGTACGC 60.036 55.000 0.00 0.00 0.00 4.42
187 188 1.153229 GGGATCTGGGTTGTACGCC 60.153 63.158 0.00 0.00 0.00 5.68
188 189 1.623542 GGGATCTGGGTTGTACGCCT 61.624 60.000 6.30 0.00 0.00 5.52
189 190 0.252197 GGATCTGGGTTGTACGCCTT 59.748 55.000 6.30 0.00 0.00 4.35
190 191 1.369625 GATCTGGGTTGTACGCCTTG 58.630 55.000 6.30 1.18 0.00 3.61
191 192 0.981183 ATCTGGGTTGTACGCCTTGA 59.019 50.000 6.30 5.60 0.00 3.02
192 193 0.759959 TCTGGGTTGTACGCCTTGAA 59.240 50.000 6.30 0.00 0.00 2.69
193 194 1.141254 TCTGGGTTGTACGCCTTGAAA 59.859 47.619 6.30 0.00 0.00 2.69
194 195 1.950909 CTGGGTTGTACGCCTTGAAAA 59.049 47.619 6.30 0.00 0.00 2.29
195 196 2.556622 CTGGGTTGTACGCCTTGAAAAT 59.443 45.455 6.30 0.00 0.00 1.82
196 197 3.752665 TGGGTTGTACGCCTTGAAAATA 58.247 40.909 6.30 0.00 0.00 1.40
197 198 4.337145 TGGGTTGTACGCCTTGAAAATAT 58.663 39.130 6.30 0.00 0.00 1.28
198 199 4.767928 TGGGTTGTACGCCTTGAAAATATT 59.232 37.500 6.30 0.00 0.00 1.28
199 200 5.106078 TGGGTTGTACGCCTTGAAAATATTC 60.106 40.000 6.30 0.00 36.04 1.75
200 201 5.025826 GGTTGTACGCCTTGAAAATATTCG 58.974 41.667 0.00 0.00 38.46 3.34
201 202 4.868450 TGTACGCCTTGAAAATATTCGG 57.132 40.909 0.00 0.00 38.46 4.30
202 203 3.623960 TGTACGCCTTGAAAATATTCGGG 59.376 43.478 0.00 0.00 38.46 5.14
203 204 2.993937 ACGCCTTGAAAATATTCGGGA 58.006 42.857 0.00 0.00 38.46 5.14
204 205 2.681344 ACGCCTTGAAAATATTCGGGAC 59.319 45.455 0.00 0.00 38.46 4.46
205 206 2.032924 CGCCTTGAAAATATTCGGGACC 59.967 50.000 0.00 0.00 38.46 4.46
206 207 3.288092 GCCTTGAAAATATTCGGGACCT 58.712 45.455 0.00 0.00 38.46 3.85
207 208 4.457466 GCCTTGAAAATATTCGGGACCTA 58.543 43.478 0.00 0.00 38.46 3.08
208 209 4.885325 GCCTTGAAAATATTCGGGACCTAA 59.115 41.667 0.00 0.00 38.46 2.69
209 210 5.535030 GCCTTGAAAATATTCGGGACCTAAT 59.465 40.000 0.00 0.00 38.46 1.73
210 211 6.040504 GCCTTGAAAATATTCGGGACCTAATT 59.959 38.462 0.00 0.00 38.46 1.40
211 212 7.649057 CCTTGAAAATATTCGGGACCTAATTC 58.351 38.462 0.00 0.00 38.46 2.17
212 213 7.502561 CCTTGAAAATATTCGGGACCTAATTCT 59.497 37.037 0.00 0.00 38.46 2.40
213 214 7.801716 TGAAAATATTCGGGACCTAATTCTG 57.198 36.000 0.00 0.00 38.46 3.02
214 215 6.262273 TGAAAATATTCGGGACCTAATTCTGC 59.738 38.462 0.00 0.00 38.46 4.26
215 216 4.974645 ATATTCGGGACCTAATTCTGCA 57.025 40.909 0.00 0.00 0.00 4.41
216 217 2.396590 TTCGGGACCTAATTCTGCAC 57.603 50.000 0.00 0.00 0.00 4.57
217 218 1.568504 TCGGGACCTAATTCTGCACT 58.431 50.000 0.00 0.00 0.00 4.40
218 219 1.906574 TCGGGACCTAATTCTGCACTT 59.093 47.619 0.00 0.00 0.00 3.16
219 220 2.304761 TCGGGACCTAATTCTGCACTTT 59.695 45.455 0.00 0.00 0.00 2.66
220 221 3.081804 CGGGACCTAATTCTGCACTTTT 58.918 45.455 0.00 0.00 0.00 2.27
221 222 4.020039 TCGGGACCTAATTCTGCACTTTTA 60.020 41.667 0.00 0.00 0.00 1.52
222 223 4.698304 CGGGACCTAATTCTGCACTTTTAA 59.302 41.667 0.00 0.00 0.00 1.52
223 224 5.182380 CGGGACCTAATTCTGCACTTTTAAA 59.818 40.000 0.00 0.00 0.00 1.52
224 225 6.621613 GGGACCTAATTCTGCACTTTTAAAG 58.378 40.000 2.81 2.81 0.00 1.85
225 226 6.208797 GGGACCTAATTCTGCACTTTTAAAGT 59.791 38.462 4.30 4.30 44.06 2.66
226 227 7.255836 GGGACCTAATTCTGCACTTTTAAAGTT 60.256 37.037 7.71 0.00 40.46 2.66
227 228 8.141909 GGACCTAATTCTGCACTTTTAAAGTTT 58.858 33.333 7.71 1.90 40.46 2.66
228 229 9.529325 GACCTAATTCTGCACTTTTAAAGTTTT 57.471 29.630 7.71 0.00 40.46 2.43
233 234 9.529325 AATTCTGCACTTTTAAAGTTTTAGGAC 57.471 29.630 7.71 0.00 40.46 3.85
234 235 7.875327 TCTGCACTTTTAAAGTTTTAGGACT 57.125 32.000 7.71 0.00 40.46 3.85
235 236 8.967664 TCTGCACTTTTAAAGTTTTAGGACTA 57.032 30.769 7.71 0.00 40.46 2.59
236 237 9.052759 TCTGCACTTTTAAAGTTTTAGGACTAG 57.947 33.333 7.71 0.00 40.46 2.57
237 238 8.967664 TGCACTTTTAAAGTTTTAGGACTAGA 57.032 30.769 7.71 0.00 40.46 2.43
238 239 9.569122 TGCACTTTTAAAGTTTTAGGACTAGAT 57.431 29.630 7.71 0.00 40.46 1.98
246 247 7.964604 AAGTTTTAGGACTAGATTGACACAC 57.035 36.000 0.00 0.00 0.00 3.82
247 248 6.465084 AGTTTTAGGACTAGATTGACACACC 58.535 40.000 0.00 0.00 0.00 4.16
248 249 6.270231 AGTTTTAGGACTAGATTGACACACCT 59.730 38.462 0.00 0.00 0.00 4.00
249 250 5.916661 TTAGGACTAGATTGACACACCTC 57.083 43.478 0.00 0.00 0.00 3.85
250 251 3.779444 AGGACTAGATTGACACACCTCA 58.221 45.455 0.00 0.00 0.00 3.86
251 252 3.511934 AGGACTAGATTGACACACCTCAC 59.488 47.826 0.00 0.00 0.00 3.51
252 253 3.258372 GGACTAGATTGACACACCTCACA 59.742 47.826 0.00 0.00 0.00 3.58
253 254 4.081420 GGACTAGATTGACACACCTCACAT 60.081 45.833 0.00 0.00 0.00 3.21
254 255 5.127194 GGACTAGATTGACACACCTCACATA 59.873 44.000 0.00 0.00 0.00 2.29
255 256 6.214191 ACTAGATTGACACACCTCACATAG 57.786 41.667 0.00 0.00 0.00 2.23
256 257 5.717178 ACTAGATTGACACACCTCACATAGT 59.283 40.000 0.00 0.00 0.00 2.12
257 258 5.489792 AGATTGACACACCTCACATAGTT 57.510 39.130 0.00 0.00 0.00 2.24
258 259 5.240891 AGATTGACACACCTCACATAGTTG 58.759 41.667 0.00 0.00 0.00 3.16
259 260 4.415881 TTGACACACCTCACATAGTTGT 57.584 40.909 0.00 0.00 36.15 3.32
260 261 5.538849 TTGACACACCTCACATAGTTGTA 57.461 39.130 0.00 0.00 33.76 2.41
261 262 5.134202 TGACACACCTCACATAGTTGTAG 57.866 43.478 0.00 0.00 33.76 2.74
262 263 4.021456 TGACACACCTCACATAGTTGTAGG 60.021 45.833 0.00 0.00 33.76 3.18
263 264 4.157246 ACACACCTCACATAGTTGTAGGA 58.843 43.478 0.00 0.00 33.76 2.94
264 265 4.021368 ACACACCTCACATAGTTGTAGGAC 60.021 45.833 0.00 0.00 33.76 3.85
265 266 4.220821 CACACCTCACATAGTTGTAGGACT 59.779 45.833 0.00 0.00 33.76 3.85
266 267 4.838986 ACACCTCACATAGTTGTAGGACTT 59.161 41.667 0.00 0.00 33.76 3.01
267 268 6.014647 ACACCTCACATAGTTGTAGGACTTA 58.985 40.000 0.00 0.00 33.76 2.24
268 269 6.668283 ACACCTCACATAGTTGTAGGACTTAT 59.332 38.462 0.00 0.00 33.76 1.73
269 270 6.980978 CACCTCACATAGTTGTAGGACTTATG 59.019 42.308 0.00 0.00 33.76 1.90
270 271 6.895756 ACCTCACATAGTTGTAGGACTTATGA 59.104 38.462 0.00 0.00 33.76 2.15
271 272 7.565398 ACCTCACATAGTTGTAGGACTTATGAT 59.435 37.037 0.00 0.00 33.76 2.45
272 273 7.869937 CCTCACATAGTTGTAGGACTTATGATG 59.130 40.741 0.00 0.00 33.76 3.07
273 274 7.210174 TCACATAGTTGTAGGACTTATGATGC 58.790 38.462 0.00 0.00 33.76 3.91
274 275 6.986231 CACATAGTTGTAGGACTTATGATGCA 59.014 38.462 0.00 0.00 33.76 3.96
275 276 7.658982 CACATAGTTGTAGGACTTATGATGCAT 59.341 37.037 0.00 0.00 33.76 3.96
276 277 8.213679 ACATAGTTGTAGGACTTATGATGCATT 58.786 33.333 0.00 0.00 33.16 3.56
277 278 9.060347 CATAGTTGTAGGACTTATGATGCATTT 57.940 33.333 0.00 0.00 0.00 2.32
278 279 7.944729 AGTTGTAGGACTTATGATGCATTTT 57.055 32.000 0.00 0.00 0.00 1.82
280 281 9.632638 AGTTGTAGGACTTATGATGCATTTTAT 57.367 29.630 0.00 0.00 0.00 1.40
304 305 1.826385 AAAAACTCCAGGGAGATGCG 58.174 50.000 21.73 0.00 44.53 4.73
305 306 0.035056 AAAACTCCAGGGAGATGCGG 60.035 55.000 21.73 0.00 44.53 5.69
306 307 1.915078 AAACTCCAGGGAGATGCGGG 61.915 60.000 21.73 0.00 44.53 6.13
307 308 2.444706 CTCCAGGGAGATGCGGGA 60.445 66.667 9.83 0.00 44.53 5.14
308 309 2.764128 TCCAGGGAGATGCGGGAC 60.764 66.667 0.00 0.00 0.00 4.46
309 310 3.866582 CCAGGGAGATGCGGGACC 61.867 72.222 0.00 0.00 0.00 4.46
310 311 3.083349 CAGGGAGATGCGGGACCA 61.083 66.667 0.00 0.00 0.00 4.02
311 312 3.083997 AGGGAGATGCGGGACCAC 61.084 66.667 0.00 0.00 0.00 4.16
312 313 3.083997 GGGAGATGCGGGACCACT 61.084 66.667 0.00 0.00 0.00 4.00
313 314 1.760875 GGGAGATGCGGGACCACTA 60.761 63.158 0.00 0.00 0.00 2.74
314 315 1.122019 GGGAGATGCGGGACCACTAT 61.122 60.000 0.00 0.00 0.00 2.12
315 316 0.318762 GGAGATGCGGGACCACTATC 59.681 60.000 0.00 0.00 0.00 2.08
316 317 1.040646 GAGATGCGGGACCACTATCA 58.959 55.000 0.00 0.00 0.00 2.15
317 318 0.753262 AGATGCGGGACCACTATCAC 59.247 55.000 0.00 0.00 0.00 3.06
318 319 0.753262 GATGCGGGACCACTATCACT 59.247 55.000 0.00 0.00 0.00 3.41
319 320 1.961394 GATGCGGGACCACTATCACTA 59.039 52.381 0.00 0.00 0.00 2.74
320 321 2.082140 TGCGGGACCACTATCACTAT 57.918 50.000 0.00 0.00 0.00 2.12
321 322 1.686587 TGCGGGACCACTATCACTATG 59.313 52.381 0.00 0.00 0.00 2.23
322 323 1.605712 GCGGGACCACTATCACTATGC 60.606 57.143 0.00 0.00 0.00 3.14
334 335 2.411701 CTATGCGACTCGGGCGAA 59.588 61.111 3.17 0.00 0.00 4.70
349 350 1.426621 CGAAGACGATCGAACCGGA 59.573 57.895 24.34 0.00 45.48 5.14
350 351 0.179181 CGAAGACGATCGAACCGGAA 60.179 55.000 24.34 0.00 45.48 4.30
351 352 1.266466 GAAGACGATCGAACCGGAAC 58.734 55.000 24.34 0.00 0.00 3.62
352 353 0.886563 AAGACGATCGAACCGGAACT 59.113 50.000 24.34 0.00 0.00 3.01
354 355 1.399791 AGACGATCGAACCGGAACTAC 59.600 52.381 24.34 0.00 0.00 2.73
355 356 0.097674 ACGATCGAACCGGAACTACG 59.902 55.000 24.34 9.27 0.00 3.51
356 357 0.374758 CGATCGAACCGGAACTACGA 59.625 55.000 10.26 11.83 37.39 3.43
357 358 1.820092 GATCGAACCGGAACTACGAC 58.180 55.000 9.46 3.50 35.91 4.34
358 359 0.453390 ATCGAACCGGAACTACGACC 59.547 55.000 9.46 0.00 35.91 4.79
410 411 3.009115 CCTCCCTGAAGGCCCGAA 61.009 66.667 0.00 0.00 34.51 4.30
482 483 4.459089 GCTCAGCTCCCACCGGTC 62.459 72.222 2.59 0.00 0.00 4.79
495 497 2.907917 CGGTCGCTCCCCCTCTAG 60.908 72.222 0.00 0.00 0.00 2.43
504 506 4.583442 CCCCTCTAGCCCTCCCCC 62.583 77.778 0.00 0.00 0.00 5.40
505 507 3.452919 CCCTCTAGCCCTCCCCCT 61.453 72.222 0.00 0.00 0.00 4.79
507 509 2.203567 CTCTAGCCCTCCCCCTCG 60.204 72.222 0.00 0.00 0.00 4.63
536 552 3.797353 GCGCCCATCCTTCTCCCA 61.797 66.667 0.00 0.00 0.00 4.37
543 559 0.608130 CATCCTTCTCCCACACGACA 59.392 55.000 0.00 0.00 0.00 4.35
661 677 1.006162 ACTCTCCCTCGCCTAGAGTTT 59.994 52.381 0.00 0.00 45.94 2.66
664 680 0.902984 TCCCTCGCCTAGAGTTTGCA 60.903 55.000 0.00 0.00 45.44 4.08
689 705 2.435693 GCTCCAGCCCGAGGTATGT 61.436 63.158 0.24 0.00 34.31 2.29
691 707 0.962489 CTCCAGCCCGAGGTATGTAG 59.038 60.000 0.00 0.00 0.00 2.74
704 720 6.407074 CCGAGGTATGTAGTCCAAATTCTTCT 60.407 42.308 0.00 0.00 0.00 2.85
705 721 7.042335 CGAGGTATGTAGTCCAAATTCTTCTT 58.958 38.462 0.00 0.00 0.00 2.52
741 795 7.519488 CGATGGATAATGACTTGGATTTGTGAG 60.519 40.741 0.00 0.00 0.00 3.51
747 801 9.857656 ATAATGACTTGGATTTGTGAGTATGAT 57.142 29.630 0.00 0.00 0.00 2.45
830 887 6.697395 TGTCAAGTGCTGCTAGTCTATTTTA 58.303 36.000 0.00 0.00 0.00 1.52
859 916 2.673368 GCATACACCTCCTGTTCTTTCG 59.327 50.000 0.00 0.00 33.91 3.46
888 945 2.188817 ACCAACCTCTCCTGTATGGAC 58.811 52.381 0.00 0.00 40.56 4.02
894 951 3.226777 CCTCTCCTGTATGGACTGTAGG 58.773 54.545 0.00 0.00 40.56 3.18
895 952 3.373220 CCTCTCCTGTATGGACTGTAGGT 60.373 52.174 0.00 0.00 40.56 3.08
916 973 4.037565 GGTGGCAAAGCTTAAGTTACTGTT 59.962 41.667 0.00 0.00 0.00 3.16
926 983 9.503399 AAGCTTAAGTTACTGTTAGCATTTAGT 57.497 29.630 0.00 0.00 0.00 2.24
1052 1109 1.537202 GATGCTTATAAAGGCCGCTGG 59.463 52.381 0.00 0.00 0.00 4.85
1065 1122 2.268920 GCTGGATCCGTGGCTTCA 59.731 61.111 7.39 0.00 0.00 3.02
1078 1135 2.033801 GTGGCTTCATGTATGGTCATGC 59.966 50.000 0.00 0.00 43.18 4.06
1092 1149 2.108976 ATGCTGTATGTCCGGCCG 59.891 61.111 21.04 21.04 0.00 6.13
1096 1153 2.041976 CTGTATGTCCGGCCGAGAT 58.958 57.895 30.73 18.54 0.00 2.75
1138 1195 1.801242 TTCCTATGGCCCAATCGAGA 58.199 50.000 0.00 0.00 0.00 4.04
1212 1269 2.823924 TAACTTGCCAGACAACGCTA 57.176 45.000 0.00 0.00 33.68 4.26
1218 1275 1.362406 GCCAGACAACGCTAAGGCTC 61.362 60.000 0.00 0.00 39.02 4.70
1240 1297 1.002011 AGGGCTTCTTTCTTCGGGC 60.002 57.895 0.00 0.00 0.00 6.13
1245 1302 1.884235 CTTCTTTCTTCGGGCTGTGT 58.116 50.000 0.00 0.00 0.00 3.72
1252 1309 0.868406 CTTCGGGCTGTGTCAAGTTC 59.132 55.000 0.00 0.00 0.00 3.01
1395 1452 0.316204 CAGGTGAACCGGTTAGTCGT 59.684 55.000 22.33 12.00 42.08 4.34
1530 1587 0.620030 AGGTATGACCATGCACAGCA 59.380 50.000 0.00 0.00 41.95 4.41
1535 1592 5.003160 GGTATGACCATGCACAGCAATATA 58.997 41.667 0.00 0.00 43.62 0.86
1566 1623 5.632347 GCGTAGAAACTGTCTGCTTACTAAA 59.368 40.000 0.00 0.00 36.86 1.85
1623 1680 3.008923 TGGAGCCATTGATTGTACACAGA 59.991 43.478 0.00 0.00 0.00 3.41
1760 1817 0.678048 GTTGGGAGGGATCTGCACAC 60.678 60.000 0.00 0.00 32.55 3.82
1764 1821 1.040646 GGAGGGATCTGCACACGATA 58.959 55.000 0.00 0.00 0.00 2.92
1784 1841 5.220835 CGATAATGCTGTTTTAGTGGATGCA 60.221 40.000 0.00 0.00 0.00 3.96
1799 1856 4.331168 GTGGATGCAATAGAGTGTGAGAAC 59.669 45.833 0.00 0.00 0.00 3.01
1803 1860 2.675317 GCAATAGAGTGTGAGAACGGCT 60.675 50.000 0.00 0.00 0.00 5.52
1804 1861 3.589988 CAATAGAGTGTGAGAACGGCTT 58.410 45.455 0.00 0.00 0.00 4.35
1810 1867 1.128692 GTGTGAGAACGGCTTATGTGC 59.871 52.381 0.00 0.00 0.00 4.57
1894 1951 5.340439 ACACAATACTACCTTAGGTGCTC 57.660 43.478 15.13 0.00 36.19 4.26
1897 1954 5.755375 CACAATACTACCTTAGGTGCTCATG 59.245 44.000 15.13 10.01 36.19 3.07
1899 1956 3.895232 ACTACCTTAGGTGCTCATGTG 57.105 47.619 15.13 0.00 36.19 3.21
1907 1964 3.272574 AGGTGCTCATGTGTATTCCTG 57.727 47.619 0.00 0.00 0.00 3.86
1914 1971 4.272018 GCTCATGTGTATTCCTGACATGAC 59.728 45.833 9.42 0.00 46.94 3.06
1936 1993 6.901300 TGACAGGTAAATTCTACCTAGTGGAT 59.099 38.462 14.92 2.99 45.55 3.41
1979 2036 2.403259 GATTTTTGCCACCTTTCCACG 58.597 47.619 0.00 0.00 0.00 4.94
1996 2053 2.804527 CCACGGCATGAGATATCACTTG 59.195 50.000 5.32 8.42 0.00 3.16
2050 2107 5.185635 TGCAAGGGAATTGTTCAATCTTAGG 59.814 40.000 0.00 0.00 41.29 2.69
2072 2129 3.002862 GCACTCATCTCTACGAGTACCTG 59.997 52.174 0.00 0.00 40.50 4.00
2245 2302 4.310022 ACCGGAGATTAATTGGAAACCA 57.690 40.909 9.46 0.00 0.00 3.67
2258 2315 4.094830 TGGAAACCAAAACTCCCTAGTC 57.905 45.455 0.00 0.00 33.75 2.59
2265 2322 3.196685 CCAAAACTCCCTAGTCCTCAGAG 59.803 52.174 0.00 0.00 33.75 3.35
2272 2329 2.357673 CCCTAGTCCTCAGAGAGAGCAA 60.358 54.545 0.00 0.00 43.31 3.91
2273 2330 2.951642 CCTAGTCCTCAGAGAGAGCAAG 59.048 54.545 0.00 0.00 43.31 4.01
2282 2339 0.463474 GAGAGAGCAAGCCCATGACC 60.463 60.000 0.00 0.00 0.00 4.02
2287 2344 0.184451 AGCAAGCCCATGACCATAGG 59.816 55.000 0.00 0.00 0.00 2.57
2381 2438 2.408050 CCGACTTCTTGAACACTCCAG 58.592 52.381 0.00 0.00 0.00 3.86
2410 2467 2.086869 CACGAGATGGCCACAATCTTT 58.913 47.619 8.16 0.00 0.00 2.52
2411 2468 2.086869 ACGAGATGGCCACAATCTTTG 58.913 47.619 8.16 7.03 0.00 2.77
2420 2477 3.088532 GCCACAATCTTTGGTGATGGTA 58.911 45.455 0.00 0.00 37.18 3.25
2426 2483 3.737559 TCTTTGGTGATGGTATGGCTT 57.262 42.857 0.00 0.00 0.00 4.35
2438 2495 6.269769 TGATGGTATGGCTTCTGATGTATACA 59.730 38.462 8.27 8.27 0.00 2.29
2478 2535 2.167662 TCTTGCTGTAGATGTGACCGA 58.832 47.619 0.00 0.00 0.00 4.69
2490 2547 3.829886 TGTGACCGAGAATGAAATTGC 57.170 42.857 0.00 0.00 36.07 3.56
2491 2548 2.487762 TGTGACCGAGAATGAAATTGCC 59.512 45.455 0.00 0.00 36.07 4.52
2493 2550 3.057596 GTGACCGAGAATGAAATTGCCAA 60.058 43.478 0.00 0.00 36.07 4.52
2514 2571 5.232463 CAATGGAGGAAATGACACTTTTGG 58.768 41.667 0.00 0.00 0.00 3.28
2557 2614 2.307686 ACTGCCTTTTCCTATTCCCGAA 59.692 45.455 0.00 0.00 0.00 4.30
2627 2684 4.437390 CCAAGGTAAACAATGATGACGAGC 60.437 45.833 0.00 0.00 0.00 5.03
2663 2720 0.734889 CAGCCTTGATAACCTTGCCG 59.265 55.000 0.00 0.00 0.00 5.69
2686 2743 7.151308 CCGAAGCTATAGAGAAATCTGAATGT 58.849 38.462 3.21 0.00 0.00 2.71
2878 2935 5.623956 TTGAGAACCACCTTTCTGAGTAA 57.376 39.130 0.00 0.00 35.90 2.24
2885 2942 5.866207 ACCACCTTTCTGAGTAAAACCTAG 58.134 41.667 0.00 0.00 0.00 3.02
2929 2993 3.051081 ACACTGCTTTTTGTTGCCAAA 57.949 38.095 0.00 0.00 38.77 3.28
2930 2994 3.608796 ACACTGCTTTTTGTTGCCAAAT 58.391 36.364 0.00 0.00 40.14 2.32
2931 2995 4.764172 ACACTGCTTTTTGTTGCCAAATA 58.236 34.783 0.00 0.00 40.14 1.40
2932 2996 5.367302 ACACTGCTTTTTGTTGCCAAATAT 58.633 33.333 0.00 0.00 40.14 1.28
2933 2997 6.520272 ACACTGCTTTTTGTTGCCAAATATA 58.480 32.000 0.00 0.00 40.14 0.86
2940 3004 7.360017 GCTTTTTGTTGCCAAATATAGACAACC 60.360 37.037 0.00 0.00 40.14 3.77
2956 3020 0.531974 AACCACTATGCGGTATGGCG 60.532 55.000 0.00 0.00 34.99 5.69
2981 3045 2.287769 TGTGTCCATGTGTGTTCTGTG 58.712 47.619 0.00 0.00 0.00 3.66
3014 3078 5.352293 TGCTATCTCTATGTTTGTTGTGCTG 59.648 40.000 0.00 0.00 0.00 4.41
3033 3097 1.630369 TGCAACAGAACTAGGGCTGAT 59.370 47.619 17.70 6.18 36.07 2.90
3048 3112 3.939592 GGGCTGATACTGACCTTGTAAAC 59.060 47.826 0.00 0.00 0.00 2.01
3063 3127 5.349270 CCTTGTAAACATTTCATGTGCATGG 59.651 40.000 11.68 0.00 44.07 3.66
3118 3182 7.115805 TCGTTGCAAATTATCCTCGATGTATAC 59.884 37.037 0.00 0.00 0.00 1.47
3119 3183 7.519002 GTTGCAAATTATCCTCGATGTATACC 58.481 38.462 0.00 0.00 0.00 2.73
3120 3184 6.170506 TGCAAATTATCCTCGATGTATACCC 58.829 40.000 0.00 0.00 0.00 3.69
3189 3253 5.332808 GCTGTGAACTGAATTTTCAATGCAC 60.333 40.000 6.02 6.02 36.64 4.57
3204 3268 6.349973 TCAATGCACGAGTCAGATAAATTC 57.650 37.500 0.00 0.00 0.00 2.17
3227 3291 9.624697 ATTCTCGTTAGTGTTTGTTTACGTATA 57.375 29.630 0.00 0.00 0.00 1.47
3228 3292 9.624697 TTCTCGTTAGTGTTTGTTTACGTATAT 57.375 29.630 0.00 0.00 0.00 0.86
3251 3334 2.286418 CGCCTGAATTATCTTTGCGGTC 60.286 50.000 0.00 0.00 35.44 4.79
3259 3342 6.483307 TGAATTATCTTTGCGGTCTTCCTATG 59.517 38.462 0.00 0.00 0.00 2.23
3643 3734 1.376086 CCGCCATATCCTCCATGCA 59.624 57.895 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.454082 AGTCATTTCTCCACTCAGATCCC 59.546 47.826 0.00 0.00 0.00 3.85
1 2 4.081198 ACAGTCATTTCTCCACTCAGATCC 60.081 45.833 0.00 0.00 0.00 3.36
2 3 4.869297 CACAGTCATTTCTCCACTCAGATC 59.131 45.833 0.00 0.00 0.00 2.75
4 5 3.007290 CCACAGTCATTTCTCCACTCAGA 59.993 47.826 0.00 0.00 0.00 3.27
5 6 3.332919 CCACAGTCATTTCTCCACTCAG 58.667 50.000 0.00 0.00 0.00 3.35
6 7 2.550855 GCCACAGTCATTTCTCCACTCA 60.551 50.000 0.00 0.00 0.00 3.41
7 8 2.079925 GCCACAGTCATTTCTCCACTC 58.920 52.381 0.00 0.00 0.00 3.51
8 9 1.701847 AGCCACAGTCATTTCTCCACT 59.298 47.619 0.00 0.00 0.00 4.00
9 10 2.191128 AGCCACAGTCATTTCTCCAC 57.809 50.000 0.00 0.00 0.00 4.02
10 11 3.173151 TCTAGCCACAGTCATTTCTCCA 58.827 45.455 0.00 0.00 0.00 3.86
11 12 3.449018 TCTCTAGCCACAGTCATTTCTCC 59.551 47.826 0.00 0.00 0.00 3.71
12 13 4.727507 TCTCTAGCCACAGTCATTTCTC 57.272 45.455 0.00 0.00 0.00 2.87
13 14 4.081198 CCTTCTCTAGCCACAGTCATTTCT 60.081 45.833 0.00 0.00 0.00 2.52
14 15 4.187694 CCTTCTCTAGCCACAGTCATTTC 58.812 47.826 0.00 0.00 0.00 2.17
15 16 3.620966 GCCTTCTCTAGCCACAGTCATTT 60.621 47.826 0.00 0.00 0.00 2.32
16 17 2.093235 GCCTTCTCTAGCCACAGTCATT 60.093 50.000 0.00 0.00 0.00 2.57
17 18 1.484240 GCCTTCTCTAGCCACAGTCAT 59.516 52.381 0.00 0.00 0.00 3.06
18 19 0.898320 GCCTTCTCTAGCCACAGTCA 59.102 55.000 0.00 0.00 0.00 3.41
19 20 0.898320 TGCCTTCTCTAGCCACAGTC 59.102 55.000 0.00 0.00 0.00 3.51
20 21 1.002544 GTTGCCTTCTCTAGCCACAGT 59.997 52.381 0.00 0.00 0.00 3.55
21 22 1.277557 AGTTGCCTTCTCTAGCCACAG 59.722 52.381 0.00 0.00 0.00 3.66
22 23 1.352083 AGTTGCCTTCTCTAGCCACA 58.648 50.000 0.00 0.00 0.00 4.17
23 24 2.233922 TGTAGTTGCCTTCTCTAGCCAC 59.766 50.000 0.00 0.00 0.00 5.01
24 25 2.536066 TGTAGTTGCCTTCTCTAGCCA 58.464 47.619 0.00 0.00 0.00 4.75
25 26 3.828875 ATGTAGTTGCCTTCTCTAGCC 57.171 47.619 0.00 0.00 0.00 3.93
26 27 6.293135 GCATTTATGTAGTTGCCTTCTCTAGC 60.293 42.308 0.00 0.00 0.00 3.42
27 28 6.074088 CGCATTTATGTAGTTGCCTTCTCTAG 60.074 42.308 0.00 0.00 0.00 2.43
28 29 5.753438 CGCATTTATGTAGTTGCCTTCTCTA 59.247 40.000 0.00 0.00 0.00 2.43
29 30 4.572389 CGCATTTATGTAGTTGCCTTCTCT 59.428 41.667 0.00 0.00 0.00 3.10
30 31 4.260784 CCGCATTTATGTAGTTGCCTTCTC 60.261 45.833 0.00 0.00 0.00 2.87
31 32 3.627577 CCGCATTTATGTAGTTGCCTTCT 59.372 43.478 0.00 0.00 0.00 2.85
32 33 3.377172 ACCGCATTTATGTAGTTGCCTTC 59.623 43.478 0.00 0.00 0.00 3.46
33 34 3.352648 ACCGCATTTATGTAGTTGCCTT 58.647 40.909 0.00 0.00 0.00 4.35
34 35 2.943033 GACCGCATTTATGTAGTTGCCT 59.057 45.455 0.00 0.00 0.00 4.75
35 36 2.680841 TGACCGCATTTATGTAGTTGCC 59.319 45.455 0.00 0.00 0.00 4.52
36 37 4.349663 TTGACCGCATTTATGTAGTTGC 57.650 40.909 0.00 0.00 0.00 4.17
37 38 5.229887 GCAATTGACCGCATTTATGTAGTTG 59.770 40.000 10.34 0.00 0.00 3.16
38 39 5.105957 TGCAATTGACCGCATTTATGTAGTT 60.106 36.000 10.34 0.00 31.95 2.24
39 40 4.397730 TGCAATTGACCGCATTTATGTAGT 59.602 37.500 10.34 0.00 31.95 2.73
40 41 4.919206 TGCAATTGACCGCATTTATGTAG 58.081 39.130 10.34 0.00 31.95 2.74
41 42 4.972514 TGCAATTGACCGCATTTATGTA 57.027 36.364 10.34 0.00 31.95 2.29
42 43 3.865011 TGCAATTGACCGCATTTATGT 57.135 38.095 10.34 0.00 31.95 2.29
43 44 5.348179 TCTTTTGCAATTGACCGCATTTATG 59.652 36.000 10.34 0.00 38.10 1.90
44 45 5.477510 TCTTTTGCAATTGACCGCATTTAT 58.522 33.333 10.34 0.00 38.10 1.40
45 46 4.876125 TCTTTTGCAATTGACCGCATTTA 58.124 34.783 10.34 0.00 38.10 1.40
46 47 3.726607 TCTTTTGCAATTGACCGCATTT 58.273 36.364 10.34 0.00 38.10 2.32
47 48 3.383620 TCTTTTGCAATTGACCGCATT 57.616 38.095 10.34 0.00 38.10 3.56
48 49 3.194116 AGATCTTTTGCAATTGACCGCAT 59.806 39.130 10.34 0.00 38.10 4.73
49 50 2.557924 AGATCTTTTGCAATTGACCGCA 59.442 40.909 10.34 0.00 36.05 5.69
50 51 3.174375 GAGATCTTTTGCAATTGACCGC 58.826 45.455 10.34 0.00 0.00 5.68
51 52 4.424061 TGAGATCTTTTGCAATTGACCG 57.576 40.909 10.34 0.00 0.00 4.79
52 53 4.925646 GGTTGAGATCTTTTGCAATTGACC 59.074 41.667 10.34 0.00 0.00 4.02
53 54 4.618489 CGGTTGAGATCTTTTGCAATTGAC 59.382 41.667 10.34 1.02 0.00 3.18
54 55 4.797471 CGGTTGAGATCTTTTGCAATTGA 58.203 39.130 10.34 1.80 0.00 2.57
55 56 3.365820 GCGGTTGAGATCTTTTGCAATTG 59.634 43.478 0.00 0.00 0.00 2.32
56 57 3.578688 GCGGTTGAGATCTTTTGCAATT 58.421 40.909 0.00 0.00 0.00 2.32
57 58 2.094545 GGCGGTTGAGATCTTTTGCAAT 60.095 45.455 0.00 0.00 0.00 3.56
58 59 1.269448 GGCGGTTGAGATCTTTTGCAA 59.731 47.619 0.00 0.00 0.00 4.08
59 60 0.881118 GGCGGTTGAGATCTTTTGCA 59.119 50.000 0.00 0.00 0.00 4.08
60 61 0.881118 TGGCGGTTGAGATCTTTTGC 59.119 50.000 0.00 0.00 0.00 3.68
61 62 2.665519 CGTTGGCGGTTGAGATCTTTTG 60.666 50.000 0.00 0.00 0.00 2.44
62 63 1.535462 CGTTGGCGGTTGAGATCTTTT 59.465 47.619 0.00 0.00 0.00 2.27
63 64 1.156736 CGTTGGCGGTTGAGATCTTT 58.843 50.000 0.00 0.00 0.00 2.52
64 65 2.840974 CGTTGGCGGTTGAGATCTT 58.159 52.632 0.00 0.00 0.00 2.40
65 66 4.598257 CGTTGGCGGTTGAGATCT 57.402 55.556 0.00 0.00 0.00 2.75
76 77 2.266376 GAAGATTTCCCGCCGTTGGC 62.266 60.000 0.00 0.00 46.75 4.52
77 78 1.654023 GGAAGATTTCCCGCCGTTGG 61.654 60.000 0.00 0.00 44.30 3.77
78 79 1.800681 GGAAGATTTCCCGCCGTTG 59.199 57.895 0.00 0.00 44.30 4.10
79 80 4.313819 GGAAGATTTCCCGCCGTT 57.686 55.556 0.00 0.00 44.30 4.44
86 87 1.794222 CGTGTGGCGGAAGATTTCC 59.206 57.895 0.00 0.00 46.62 3.13
87 88 1.134694 GCGTGTGGCGGAAGATTTC 59.865 57.895 0.00 0.00 41.69 2.17
88 89 2.332654 GGCGTGTGGCGGAAGATTT 61.333 57.895 0.00 0.00 44.92 2.17
89 90 2.746277 GGCGTGTGGCGGAAGATT 60.746 61.111 0.00 0.00 44.92 2.40
90 91 4.778143 GGGCGTGTGGCGGAAGAT 62.778 66.667 0.00 0.00 44.92 2.40
99 100 4.704833 CTGGACCCAGGGCGTGTG 62.705 72.222 4.91 0.00 40.17 3.82
107 108 2.282462 GTTGCCACCTGGACCCAG 60.282 66.667 9.06 9.06 43.26 4.45
108 109 4.263572 CGTTGCCACCTGGACCCA 62.264 66.667 0.00 0.00 37.39 4.51
110 111 4.265056 ACCGTTGCCACCTGGACC 62.265 66.667 0.00 0.00 37.39 4.46
111 112 2.668550 GACCGTTGCCACCTGGAC 60.669 66.667 0.00 0.00 37.39 4.02
112 113 3.948719 GGACCGTTGCCACCTGGA 61.949 66.667 0.00 0.00 37.39 3.86
113 114 4.263572 TGGACCGTTGCCACCTGG 62.264 66.667 0.00 0.00 38.53 4.45
114 115 2.669569 CTGGACCGTTGCCACCTG 60.670 66.667 0.00 0.00 0.00 4.00
115 116 2.847234 TCTGGACCGTTGCCACCT 60.847 61.111 0.00 0.00 0.00 4.00
116 117 2.668550 GTCTGGACCGTTGCCACC 60.669 66.667 0.00 0.00 0.00 4.61
117 118 3.041940 CGTCTGGACCGTTGCCAC 61.042 66.667 0.00 0.00 0.00 5.01
118 119 4.980805 GCGTCTGGACCGTTGCCA 62.981 66.667 0.00 0.00 0.00 4.92
134 135 2.045926 ATTGACTGGCAGACGGGC 60.046 61.111 23.66 5.40 43.73 6.13
135 136 2.401766 GCATTGACTGGCAGACGGG 61.402 63.158 23.66 9.53 0.00 5.28
136 137 1.672030 TGCATTGACTGGCAGACGG 60.672 57.895 23.66 9.90 34.58 4.79
137 138 3.970721 TGCATTGACTGGCAGACG 58.029 55.556 23.66 3.67 34.58 4.18
141 142 3.057548 CGGCTGCATTGACTGGCA 61.058 61.111 0.50 0.00 38.52 4.92
142 143 4.487412 GCGGCTGCATTGACTGGC 62.487 66.667 14.08 0.00 42.15 4.85
152 153 2.732094 CAAACTTGCTGCGGCTGC 60.732 61.111 22.87 22.87 43.20 5.25
153 154 2.049802 CCAAACTTGCTGCGGCTG 60.050 61.111 20.27 13.90 39.59 4.85
154 155 3.297620 CCCAAACTTGCTGCGGCT 61.298 61.111 20.27 0.00 39.59 5.52
155 156 2.548127 GATCCCAAACTTGCTGCGGC 62.548 60.000 11.65 11.65 39.26 6.53
156 157 0.962356 AGATCCCAAACTTGCTGCGG 60.962 55.000 0.00 0.00 0.00 5.69
157 158 0.169672 CAGATCCCAAACTTGCTGCG 59.830 55.000 0.00 0.00 0.00 5.18
158 159 0.529378 CCAGATCCCAAACTTGCTGC 59.471 55.000 0.00 0.00 0.00 5.25
159 160 1.180029 CCCAGATCCCAAACTTGCTG 58.820 55.000 0.00 0.00 0.00 4.41
160 161 0.779997 ACCCAGATCCCAAACTTGCT 59.220 50.000 0.00 0.00 0.00 3.91
161 162 1.273327 CAACCCAGATCCCAAACTTGC 59.727 52.381 0.00 0.00 0.00 4.01
162 163 2.597455 ACAACCCAGATCCCAAACTTG 58.403 47.619 0.00 0.00 0.00 3.16
163 164 3.763057 GTACAACCCAGATCCCAAACTT 58.237 45.455 0.00 0.00 0.00 2.66
164 165 2.290071 CGTACAACCCAGATCCCAAACT 60.290 50.000 0.00 0.00 0.00 2.66
165 166 2.081462 CGTACAACCCAGATCCCAAAC 58.919 52.381 0.00 0.00 0.00 2.93
166 167 1.612199 GCGTACAACCCAGATCCCAAA 60.612 52.381 0.00 0.00 0.00 3.28
167 168 0.035820 GCGTACAACCCAGATCCCAA 60.036 55.000 0.00 0.00 0.00 4.12
168 169 1.600107 GCGTACAACCCAGATCCCA 59.400 57.895 0.00 0.00 0.00 4.37
169 170 1.153229 GGCGTACAACCCAGATCCC 60.153 63.158 0.00 0.00 0.00 3.85
170 171 0.252197 AAGGCGTACAACCCAGATCC 59.748 55.000 0.00 0.00 0.00 3.36
171 172 1.066430 TCAAGGCGTACAACCCAGATC 60.066 52.381 0.00 0.00 0.00 2.75
172 173 0.981183 TCAAGGCGTACAACCCAGAT 59.019 50.000 0.00 0.00 0.00 2.90
173 174 0.759959 TTCAAGGCGTACAACCCAGA 59.240 50.000 0.00 0.00 0.00 3.86
174 175 1.600023 TTTCAAGGCGTACAACCCAG 58.400 50.000 0.00 0.00 0.00 4.45
175 176 2.054232 TTTTCAAGGCGTACAACCCA 57.946 45.000 0.00 0.00 0.00 4.51
176 177 4.976224 ATATTTTCAAGGCGTACAACCC 57.024 40.909 0.00 0.00 0.00 4.11
177 178 5.025826 CGAATATTTTCAAGGCGTACAACC 58.974 41.667 0.00 0.00 0.00 3.77
178 179 5.025826 CCGAATATTTTCAAGGCGTACAAC 58.974 41.667 0.00 0.00 0.00 3.32
179 180 4.095185 CCCGAATATTTTCAAGGCGTACAA 59.905 41.667 0.00 0.00 0.00 2.41
180 181 3.623960 CCCGAATATTTTCAAGGCGTACA 59.376 43.478 0.00 0.00 0.00 2.90
181 182 3.872771 TCCCGAATATTTTCAAGGCGTAC 59.127 43.478 0.00 0.00 0.00 3.67
182 183 3.872771 GTCCCGAATATTTTCAAGGCGTA 59.127 43.478 0.00 0.00 0.00 4.42
183 184 2.681344 GTCCCGAATATTTTCAAGGCGT 59.319 45.455 0.00 0.00 0.00 5.68
184 185 2.032924 GGTCCCGAATATTTTCAAGGCG 59.967 50.000 0.00 0.00 0.00 5.52
185 186 3.288092 AGGTCCCGAATATTTTCAAGGC 58.712 45.455 0.00 0.00 0.00 4.35
186 187 7.502561 AGAATTAGGTCCCGAATATTTTCAAGG 59.497 37.037 0.00 0.00 0.00 3.61
187 188 8.345565 CAGAATTAGGTCCCGAATATTTTCAAG 58.654 37.037 0.00 0.00 0.00 3.02
188 189 7.201785 GCAGAATTAGGTCCCGAATATTTTCAA 60.202 37.037 0.00 0.00 0.00 2.69
189 190 6.262273 GCAGAATTAGGTCCCGAATATTTTCA 59.738 38.462 0.00 0.00 0.00 2.69
190 191 6.262273 TGCAGAATTAGGTCCCGAATATTTTC 59.738 38.462 0.00 0.00 0.00 2.29
191 192 6.039382 GTGCAGAATTAGGTCCCGAATATTTT 59.961 38.462 0.00 0.00 0.00 1.82
192 193 5.531287 GTGCAGAATTAGGTCCCGAATATTT 59.469 40.000 0.00 0.00 0.00 1.40
193 194 5.063880 GTGCAGAATTAGGTCCCGAATATT 58.936 41.667 0.00 0.00 0.00 1.28
194 195 4.348168 AGTGCAGAATTAGGTCCCGAATAT 59.652 41.667 0.00 0.00 0.00 1.28
195 196 3.709653 AGTGCAGAATTAGGTCCCGAATA 59.290 43.478 0.00 0.00 0.00 1.75
196 197 2.505819 AGTGCAGAATTAGGTCCCGAAT 59.494 45.455 0.00 0.00 0.00 3.34
197 198 1.906574 AGTGCAGAATTAGGTCCCGAA 59.093 47.619 0.00 0.00 0.00 4.30
198 199 1.568504 AGTGCAGAATTAGGTCCCGA 58.431 50.000 0.00 0.00 0.00 5.14
199 200 2.403252 AAGTGCAGAATTAGGTCCCG 57.597 50.000 0.00 0.00 0.00 5.14
200 201 6.208797 ACTTTAAAAGTGCAGAATTAGGTCCC 59.791 38.462 0.00 0.00 41.01 4.46
201 202 7.215719 ACTTTAAAAGTGCAGAATTAGGTCC 57.784 36.000 0.00 0.00 41.01 4.46
202 203 9.529325 AAAACTTTAAAAGTGCAGAATTAGGTC 57.471 29.630 0.00 0.00 41.91 3.85
207 208 9.529325 GTCCTAAAACTTTAAAAGTGCAGAATT 57.471 29.630 0.00 0.00 41.91 2.17
208 209 8.914011 AGTCCTAAAACTTTAAAAGTGCAGAAT 58.086 29.630 0.00 0.00 41.91 2.40
209 210 8.288689 AGTCCTAAAACTTTAAAAGTGCAGAA 57.711 30.769 0.00 0.00 41.91 3.02
210 211 7.875327 AGTCCTAAAACTTTAAAAGTGCAGA 57.125 32.000 0.00 0.00 41.91 4.26
211 212 9.052759 TCTAGTCCTAAAACTTTAAAAGTGCAG 57.947 33.333 0.00 0.00 41.91 4.41
212 213 8.967664 TCTAGTCCTAAAACTTTAAAAGTGCA 57.032 30.769 0.00 0.00 41.91 4.57
220 221 9.485206 GTGTGTCAATCTAGTCCTAAAACTTTA 57.515 33.333 0.00 0.00 0.00 1.85
221 222 7.444487 GGTGTGTCAATCTAGTCCTAAAACTTT 59.556 37.037 0.00 0.00 0.00 2.66
222 223 6.935208 GGTGTGTCAATCTAGTCCTAAAACTT 59.065 38.462 0.00 0.00 0.00 2.66
223 224 6.270231 AGGTGTGTCAATCTAGTCCTAAAACT 59.730 38.462 0.00 0.00 0.00 2.66
224 225 6.465084 AGGTGTGTCAATCTAGTCCTAAAAC 58.535 40.000 0.00 0.00 0.00 2.43
225 226 6.269077 TGAGGTGTGTCAATCTAGTCCTAAAA 59.731 38.462 0.00 0.00 0.00 1.52
226 227 5.778241 TGAGGTGTGTCAATCTAGTCCTAAA 59.222 40.000 0.00 0.00 0.00 1.85
227 228 5.185249 GTGAGGTGTGTCAATCTAGTCCTAA 59.815 44.000 0.00 0.00 0.00 2.69
228 229 4.705507 GTGAGGTGTGTCAATCTAGTCCTA 59.294 45.833 0.00 0.00 0.00 2.94
229 230 3.511934 GTGAGGTGTGTCAATCTAGTCCT 59.488 47.826 0.00 0.00 0.00 3.85
230 231 3.258372 TGTGAGGTGTGTCAATCTAGTCC 59.742 47.826 0.00 0.00 0.00 3.85
231 232 4.521130 TGTGAGGTGTGTCAATCTAGTC 57.479 45.455 0.00 0.00 0.00 2.59
232 233 5.717178 ACTATGTGAGGTGTGTCAATCTAGT 59.283 40.000 0.00 0.00 0.00 2.57
233 234 6.214191 ACTATGTGAGGTGTGTCAATCTAG 57.786 41.667 0.00 0.00 0.00 2.43
234 235 6.398095 CAACTATGTGAGGTGTGTCAATCTA 58.602 40.000 0.00 0.00 38.17 1.98
235 236 5.240891 CAACTATGTGAGGTGTGTCAATCT 58.759 41.667 0.00 0.00 38.17 2.40
236 237 5.536554 CAACTATGTGAGGTGTGTCAATC 57.463 43.478 0.00 0.00 38.17 2.67
245 246 6.895756 TCATAAGTCCTACAACTATGTGAGGT 59.104 38.462 0.00 0.00 40.84 3.85
246 247 7.348080 TCATAAGTCCTACAACTATGTGAGG 57.652 40.000 0.00 0.00 40.84 3.86
247 248 7.383572 GCATCATAAGTCCTACAACTATGTGAG 59.616 40.741 0.00 0.00 40.84 3.51
248 249 7.147742 TGCATCATAAGTCCTACAACTATGTGA 60.148 37.037 0.00 0.00 40.84 3.58
249 250 6.986231 TGCATCATAAGTCCTACAACTATGTG 59.014 38.462 0.00 0.00 40.84 3.21
250 251 7.124573 TGCATCATAAGTCCTACAACTATGT 57.875 36.000 0.00 0.00 43.74 2.29
251 252 8.613060 AATGCATCATAAGTCCTACAACTATG 57.387 34.615 0.00 0.00 0.00 2.23
252 253 9.632638 AAAATGCATCATAAGTCCTACAACTAT 57.367 29.630 0.00 0.00 0.00 2.12
254 255 7.944729 AAAATGCATCATAAGTCCTACAACT 57.055 32.000 0.00 0.00 0.00 3.16
285 286 1.614317 CCGCATCTCCCTGGAGTTTTT 60.614 52.381 12.77 0.00 42.49 1.94
286 287 0.035056 CCGCATCTCCCTGGAGTTTT 60.035 55.000 12.77 0.00 42.49 2.43
287 288 1.604378 CCGCATCTCCCTGGAGTTT 59.396 57.895 12.77 0.00 42.49 2.66
288 289 2.370445 CCCGCATCTCCCTGGAGTT 61.370 63.158 12.77 2.04 42.49 3.01
289 290 2.765807 CCCGCATCTCCCTGGAGT 60.766 66.667 12.77 0.00 42.49 3.85
290 291 2.444706 TCCCGCATCTCCCTGGAG 60.445 66.667 6.88 6.88 43.21 3.86
291 292 2.764128 GTCCCGCATCTCCCTGGA 60.764 66.667 0.00 0.00 0.00 3.86
292 293 3.866582 GGTCCCGCATCTCCCTGG 61.867 72.222 0.00 0.00 0.00 4.45
293 294 3.083349 TGGTCCCGCATCTCCCTG 61.083 66.667 0.00 0.00 0.00 4.45
294 295 2.238319 TAGTGGTCCCGCATCTCCCT 62.238 60.000 0.00 0.00 0.00 4.20
295 296 1.122019 ATAGTGGTCCCGCATCTCCC 61.122 60.000 0.00 0.00 0.00 4.30
296 297 0.318762 GATAGTGGTCCCGCATCTCC 59.681 60.000 0.00 0.00 0.00 3.71
297 298 1.040646 TGATAGTGGTCCCGCATCTC 58.959 55.000 0.00 0.00 0.00 2.75
298 299 0.753262 GTGATAGTGGTCCCGCATCT 59.247 55.000 0.00 0.00 0.00 2.90
299 300 0.753262 AGTGATAGTGGTCCCGCATC 59.247 55.000 0.00 1.90 0.00 3.91
300 301 2.082140 TAGTGATAGTGGTCCCGCAT 57.918 50.000 0.00 0.00 0.00 4.73
301 302 1.686587 CATAGTGATAGTGGTCCCGCA 59.313 52.381 0.00 0.00 0.00 5.69
302 303 1.605712 GCATAGTGATAGTGGTCCCGC 60.606 57.143 0.00 0.00 0.00 6.13
303 304 1.335964 CGCATAGTGATAGTGGTCCCG 60.336 57.143 0.00 0.00 0.00 5.14
304 305 1.961394 TCGCATAGTGATAGTGGTCCC 59.039 52.381 0.00 0.00 0.00 4.46
305 306 2.623889 AGTCGCATAGTGATAGTGGTCC 59.376 50.000 0.00 0.00 0.00 4.46
306 307 3.607310 CGAGTCGCATAGTGATAGTGGTC 60.607 52.174 0.00 0.00 0.00 4.02
307 308 2.290916 CGAGTCGCATAGTGATAGTGGT 59.709 50.000 0.00 0.00 0.00 4.16
308 309 2.350868 CCGAGTCGCATAGTGATAGTGG 60.351 54.545 7.12 0.00 0.00 4.00
309 310 2.350868 CCCGAGTCGCATAGTGATAGTG 60.351 54.545 7.12 0.00 0.00 2.74
310 311 1.880675 CCCGAGTCGCATAGTGATAGT 59.119 52.381 7.12 0.00 0.00 2.12
311 312 1.401670 GCCCGAGTCGCATAGTGATAG 60.402 57.143 7.12 0.00 0.00 2.08
312 313 0.596577 GCCCGAGTCGCATAGTGATA 59.403 55.000 7.12 0.00 0.00 2.15
313 314 1.364171 GCCCGAGTCGCATAGTGAT 59.636 57.895 7.12 0.00 0.00 3.06
314 315 2.805546 GCCCGAGTCGCATAGTGA 59.194 61.111 7.12 0.00 0.00 3.41
315 316 2.607668 TTCGCCCGAGTCGCATAGTG 62.608 60.000 7.12 2.32 0.00 2.74
316 317 2.337749 CTTCGCCCGAGTCGCATAGT 62.338 60.000 7.12 0.00 0.00 2.12
317 318 1.658717 CTTCGCCCGAGTCGCATAG 60.659 63.158 7.12 0.00 0.00 2.23
318 319 2.116533 TCTTCGCCCGAGTCGCATA 61.117 57.895 7.12 0.00 0.00 3.14
319 320 3.449227 TCTTCGCCCGAGTCGCAT 61.449 61.111 7.12 0.00 0.00 4.73
320 321 4.415332 GTCTTCGCCCGAGTCGCA 62.415 66.667 7.12 0.00 0.00 5.10
322 323 2.968330 GATCGTCTTCGCCCGAGTCG 62.968 65.000 5.29 5.29 36.41 4.18
334 335 1.399791 GTAGTTCCGGTTCGATCGTCT 59.600 52.381 15.94 4.91 0.00 4.18
394 395 2.269241 GTTCGGGCCTTCAGGGAG 59.731 66.667 0.84 0.00 37.23 4.30
482 483 4.548513 AGGGCTAGAGGGGGAGCG 62.549 72.222 0.00 0.00 39.72 5.03
509 511 3.527360 GATGGGCGCACGCTAATGC 62.527 63.158 15.36 0.00 42.48 3.56
536 552 4.003788 CGGCCTCCCTTGTCGTGT 62.004 66.667 0.00 0.00 0.00 4.49
619 635 1.926426 ATTCGGGGGAGAAGCAAGGG 61.926 60.000 0.00 0.00 33.19 3.95
664 680 4.335647 CGGGCTGGAGCAACTGGT 62.336 66.667 0.20 0.00 44.36 4.00
677 693 1.117150 TTGGACTACATACCTCGGGC 58.883 55.000 0.00 0.00 0.00 6.13
689 705 9.449719 GATGTAGGAAAAGAAGAATTTGGACTA 57.550 33.333 0.00 0.00 0.00 2.59
691 707 7.119262 TCGATGTAGGAAAAGAAGAATTTGGAC 59.881 37.037 0.00 0.00 0.00 4.02
704 720 7.735917 AGTCATTATCCATCGATGTAGGAAAA 58.264 34.615 23.27 9.38 34.62 2.29
705 721 7.303182 AGTCATTATCCATCGATGTAGGAAA 57.697 36.000 23.27 10.66 34.62 3.13
788 845 3.253921 TGACAGTTCATGGTTCAATGCAG 59.746 43.478 0.00 0.00 0.00 4.41
859 916 2.106684 AGGAGAGGTTGGTTTCAGGTTC 59.893 50.000 0.00 0.00 0.00 3.62
888 945 3.412386 ACTTAAGCTTTGCCACCTACAG 58.588 45.455 3.20 0.00 0.00 2.74
894 951 4.830826 ACAGTAACTTAAGCTTTGCCAC 57.169 40.909 3.20 0.00 0.00 5.01
895 952 5.048991 GCTAACAGTAACTTAAGCTTTGCCA 60.049 40.000 3.20 0.00 0.00 4.92
974 1031 9.755804 TCTACAATGCATTTTTGACAAATGTAA 57.244 25.926 9.83 0.00 39.25 2.41
976 1033 8.714179 CATCTACAATGCATTTTTGACAAATGT 58.286 29.630 9.83 3.85 39.25 2.71
979 1036 7.384660 GTCCATCTACAATGCATTTTTGACAAA 59.615 33.333 9.83 0.00 0.00 2.83
982 1039 6.389091 TGTCCATCTACAATGCATTTTTGAC 58.611 36.000 9.83 9.93 0.00 3.18
985 1042 6.211184 TCCTTGTCCATCTACAATGCATTTTT 59.789 34.615 9.83 2.14 38.61 1.94
994 1051 3.791320 ACCTCTCCTTGTCCATCTACAA 58.209 45.455 0.00 0.00 37.75 2.41
1052 1109 2.146342 CCATACATGAAGCCACGGATC 58.854 52.381 0.00 0.00 0.00 3.36
1065 1122 4.645535 GGACATACAGCATGACCATACAT 58.354 43.478 0.00 0.00 45.52 2.29
1078 1135 0.389391 AATCTCGGCCGGACATACAG 59.611 55.000 27.83 13.72 0.00 2.74
1096 1153 9.930693 GGAAATACTCTCTTTCTTTCTCTGTAA 57.069 33.333 0.00 0.00 33.93 2.41
1138 1195 3.321968 GCAATCCTTTTCTTGTCCCTTGT 59.678 43.478 0.00 0.00 0.00 3.16
1200 1257 0.037326 TGAGCCTTAGCGTTGTCTGG 60.037 55.000 0.00 0.00 46.67 3.86
1212 1269 1.484444 AAGAAGCCCTCGTGAGCCTT 61.484 55.000 0.00 0.00 0.00 4.35
1218 1275 1.071605 CGAAGAAAGAAGCCCTCGTG 58.928 55.000 0.00 0.00 0.00 4.35
1240 1297 3.475566 TTCCCTCAGAACTTGACACAG 57.524 47.619 0.00 0.00 0.00 3.66
1252 1309 2.166270 GCAAAGAGCGTTCCCTCAG 58.834 57.895 0.00 0.00 34.26 3.35
1535 1592 5.701290 AGCAGACAGTTTCTACGCTAAAAAT 59.299 36.000 0.00 0.00 32.96 1.82
1760 1817 5.207768 GCATCCACTAAAACAGCATTATCG 58.792 41.667 0.00 0.00 0.00 2.92
1764 1821 4.870123 TTGCATCCACTAAAACAGCATT 57.130 36.364 0.00 0.00 0.00 3.56
1784 1841 3.963428 AAGCCGTTCTCACACTCTATT 57.037 42.857 0.00 0.00 0.00 1.73
1799 1856 1.293924 CTTGAGGAGCACATAAGCCG 58.706 55.000 0.00 0.00 34.23 5.52
1803 1860 9.474313 AAATTTATTACCTTGAGGAGCACATAA 57.526 29.630 3.59 0.00 38.94 1.90
1804 1861 8.902806 CAAATTTATTACCTTGAGGAGCACATA 58.097 33.333 3.59 0.00 38.94 2.29
1887 1944 2.840038 TCAGGAATACACATGAGCACCT 59.160 45.455 0.00 0.00 0.00 4.00
1889 1946 3.599343 TGTCAGGAATACACATGAGCAC 58.401 45.455 0.00 0.00 31.41 4.40
1894 1951 5.729974 CTGTCATGTCAGGAATACACATG 57.270 43.478 11.62 5.13 45.93 3.21
1907 1964 7.707035 CACTAGGTAGAATTTACCTGTCATGTC 59.293 40.741 20.59 0.00 46.60 3.06
1913 1970 6.408206 GCATCCACTAGGTAGAATTTACCTGT 60.408 42.308 20.59 15.65 46.60 4.00
1914 1971 5.992217 GCATCCACTAGGTAGAATTTACCTG 59.008 44.000 20.59 15.25 46.60 4.00
1936 1993 0.465460 GTTTGGCTCCATATCCGGCA 60.465 55.000 0.00 0.00 0.00 5.69
1979 2036 4.953667 TCAGTCAAGTGATATCTCATGCC 58.046 43.478 3.98 0.00 32.98 4.40
1996 2053 1.351017 TGATTGTTCCCCCACTCAGTC 59.649 52.381 0.00 0.00 0.00 3.51
2245 2302 4.044825 TCTCTCTGAGGACTAGGGAGTTTT 59.955 45.833 4.59 0.00 42.25 2.43
2250 2307 1.493022 GCTCTCTCTGAGGACTAGGGA 59.507 57.143 4.59 0.00 42.87 4.20
2258 2315 1.263342 TGGGCTTGCTCTCTCTGAGG 61.263 60.000 4.59 0.00 42.87 3.86
2265 2322 0.106819 ATGGTCATGGGCTTGCTCTC 60.107 55.000 0.00 0.00 0.00 3.20
2282 2339 3.346315 TGAACTCAACCATGTGCCTATG 58.654 45.455 0.00 0.00 0.00 2.23
2287 2344 2.221169 TGTCTGAACTCAACCATGTGC 58.779 47.619 0.00 0.00 0.00 4.57
2362 2419 1.795286 GCTGGAGTGTTCAAGAAGTCG 59.205 52.381 0.00 0.00 0.00 4.18
2381 2438 2.035961 TGGCCATCTCGTGATAGTAAGC 59.964 50.000 0.00 0.00 0.00 3.09
2410 2467 2.195727 TCAGAAGCCATACCATCACCA 58.804 47.619 0.00 0.00 0.00 4.17
2411 2468 3.144506 CATCAGAAGCCATACCATCACC 58.855 50.000 0.00 0.00 0.00 4.02
2420 2477 7.288852 ACTCTTAGTGTATACATCAGAAGCCAT 59.711 37.037 9.18 0.00 0.00 4.40
2438 2495 4.093011 AGAAGCTCATCCACACTCTTAGT 58.907 43.478 0.00 0.00 0.00 2.24
2474 2531 3.119029 CCATTGGCAATTTCATTCTCGGT 60.119 43.478 10.65 0.00 0.00 4.69
2478 2535 4.355549 TCCTCCATTGGCAATTTCATTCT 58.644 39.130 10.65 0.00 0.00 2.40
2490 2547 5.232463 CAAAAGTGTCATTTCCTCCATTGG 58.768 41.667 0.00 0.00 0.00 3.16
2491 2548 5.221501 ACCAAAAGTGTCATTTCCTCCATTG 60.222 40.000 0.00 0.00 0.00 2.82
2493 2550 4.281688 CACCAAAAGTGTCATTTCCTCCAT 59.718 41.667 0.00 0.00 41.93 3.41
2514 2571 5.975442 GTGTAAACTCTTCAACACTAGCAC 58.025 41.667 0.00 0.00 39.27 4.40
2557 2614 2.091111 GGAATCACCATTCTTCCCCCAT 60.091 50.000 0.00 0.00 38.85 4.00
2627 2684 2.223735 GGCTGGTCATCAAATGCATCAG 60.224 50.000 0.00 1.19 0.00 2.90
2663 2720 8.885494 ACACATTCAGATTTCTCTATAGCTTC 57.115 34.615 0.00 0.00 0.00 3.86
2686 2743 5.766590 TCTTCAGGGACATCTGTATCTACA 58.233 41.667 0.00 0.00 36.25 2.74
2812 2869 5.843673 TTTTGTTGGACATGCTAAGTTGA 57.156 34.783 0.00 0.00 0.00 3.18
2813 2870 6.144402 GTCATTTTGTTGGACATGCTAAGTTG 59.856 38.462 0.00 0.00 0.00 3.16
2857 2914 5.623956 TTTACTCAGAAAGGTGGTTCTCA 57.376 39.130 0.00 0.00 35.63 3.27
2929 2993 6.351033 CCATACCGCATAGTGGTTGTCTATAT 60.351 42.308 7.63 0.00 44.78 0.86
2930 2994 5.047590 CCATACCGCATAGTGGTTGTCTATA 60.048 44.000 7.63 0.00 44.78 1.31
2931 2995 4.262463 CCATACCGCATAGTGGTTGTCTAT 60.262 45.833 7.63 0.00 44.78 1.98
2932 2996 3.069016 CCATACCGCATAGTGGTTGTCTA 59.931 47.826 7.63 0.00 44.78 2.59
2933 2997 2.158957 CCATACCGCATAGTGGTTGTCT 60.159 50.000 7.63 0.00 44.78 3.41
2940 3004 1.069090 ACCGCCATACCGCATAGTG 59.931 57.895 0.00 0.00 0.00 2.74
2956 3020 0.819259 ACACACATGGACACAGCACC 60.819 55.000 0.00 0.00 0.00 5.01
2981 3045 5.913137 ACATAGAGATAGCATAGCCTGTC 57.087 43.478 0.00 0.00 0.00 3.51
3014 3078 2.409948 ATCAGCCCTAGTTCTGTTGC 57.590 50.000 7.94 0.00 0.00 4.17
3019 3083 3.052490 AGGTCAGTATCAGCCCTAGTTCT 60.052 47.826 0.00 0.00 0.00 3.01
3063 3127 3.140623 GTCCTATCCGGAGTCTGACTAC 58.859 54.545 11.34 10.46 44.20 2.73
3109 3173 4.285003 TCAACCAATAGGGGGTATACATCG 59.715 45.833 5.01 0.00 42.91 3.84
3118 3182 3.951563 TTCAGATCAACCAATAGGGGG 57.048 47.619 0.00 0.00 42.91 5.40
3119 3183 5.893255 TGAAATTCAGATCAACCAATAGGGG 59.107 40.000 0.00 0.00 42.91 4.79
3227 3291 3.498397 CCGCAAAGATAATTCAGGCGTAT 59.502 43.478 0.00 0.00 36.69 3.06
3228 3292 2.869801 CCGCAAAGATAATTCAGGCGTA 59.130 45.455 0.00 0.00 36.69 4.42
3229 3293 1.670811 CCGCAAAGATAATTCAGGCGT 59.329 47.619 0.00 0.00 36.69 5.68
3231 3295 2.945668 AGACCGCAAAGATAATTCAGGC 59.054 45.455 0.00 0.00 0.00 4.85
3232 3296 4.035675 GGAAGACCGCAAAGATAATTCAGG 59.964 45.833 0.00 0.00 0.00 3.86
3233 3297 4.878397 AGGAAGACCGCAAAGATAATTCAG 59.122 41.667 0.00 0.00 41.83 3.02
3234 3298 4.843728 AGGAAGACCGCAAAGATAATTCA 58.156 39.130 0.00 0.00 41.83 2.57
3235 3299 6.073003 CCATAGGAAGACCGCAAAGATAATTC 60.073 42.308 0.00 0.00 41.83 2.17
3236 3300 5.765182 CCATAGGAAGACCGCAAAGATAATT 59.235 40.000 0.00 0.00 41.83 1.40
3237 3301 5.071788 TCCATAGGAAGACCGCAAAGATAAT 59.928 40.000 0.00 0.00 41.83 1.28
3240 3304 2.771943 TCCATAGGAAGACCGCAAAGAT 59.228 45.455 0.00 0.00 41.83 2.40
3259 3342 0.318441 GCAGGTTTGGGAAAGCTTCC 59.682 55.000 0.00 2.70 46.23 3.46
3268 3351 1.178534 ATGTGGTTCGCAGGTTTGGG 61.179 55.000 0.00 0.00 38.52 4.12
3271 3354 0.823356 AGCATGTGGTTCGCAGGTTT 60.823 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.