Multiple sequence alignment - TraesCS3A01G135400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G135400 chr3A 100.000 6632 0 0 1 6632 112950006 112956637 0.000000e+00 12248.0
1 TraesCS3A01G135400 chr3B 90.088 5801 341 117 1 5693 169621427 169627101 0.000000e+00 7312.0
2 TraesCS3A01G135400 chr3B 87.974 607 60 9 5985 6579 169627220 169627825 0.000000e+00 704.0
3 TraesCS3A01G135400 chr3B 96.324 136 5 0 5849 5984 42702340 42702205 2.410000e-54 224.0
4 TraesCS3A01G135400 chr3D 91.681 5073 278 72 842 5850 116036029 116041021 0.000000e+00 6898.0
5 TraesCS3A01G135400 chr3D 87.959 490 33 9 6104 6578 116041125 116041603 7.510000e-154 555.0
6 TraesCS3A01G135400 chr3D 90.114 263 15 6 1 263 116034511 116034762 1.380000e-86 331.0
7 TraesCS3A01G135400 chr3D 93.333 150 6 2 534 682 116035636 116035782 1.120000e-52 219.0
8 TraesCS3A01G135400 chr3D 100.000 47 0 0 5985 6031 116041055 116041101 3.290000e-13 87.9
9 TraesCS3A01G135400 chr1D 97.674 129 3 0 5848 5976 299268419 299268547 8.660000e-54 222.0
10 TraesCS3A01G135400 chr7B 95.652 138 5 1 5845 5982 104514627 104514763 3.110000e-53 220.0
11 TraesCS3A01G135400 chr7B 94.286 140 8 0 5837 5976 506990552 506990691 1.450000e-51 215.0
12 TraesCS3A01G135400 chr7A 96.269 134 5 0 5846 5979 732956111 732956244 3.110000e-53 220.0
13 TraesCS3A01G135400 chr5D 97.656 128 3 0 5849 5976 269087868 269087741 3.110000e-53 220.0
14 TraesCS3A01G135400 chr2A 95.652 138 5 1 5845 5982 425829938 425830074 3.110000e-53 220.0
15 TraesCS3A01G135400 chr1A 96.241 133 5 0 5845 5977 455042837 455042969 1.120000e-52 219.0
16 TraesCS3A01G135400 chr1A 95.556 135 5 1 5848 5982 244554991 244554858 1.450000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G135400 chr3A 112950006 112956637 6631 False 12248.00 12248 100.0000 1 6632 1 chr3A.!!$F1 6631
1 TraesCS3A01G135400 chr3B 169621427 169627825 6398 False 4008.00 7312 89.0310 1 6579 2 chr3B.!!$F1 6578
2 TraesCS3A01G135400 chr3D 116034511 116041603 7092 False 1618.18 6898 92.6174 1 6578 5 chr3D.!!$F1 6577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.234884 CTGGGTTTCGTTTCGTCAGC 59.765 55.0 0.00 0.00 0.00 4.26 F
1585 2376 0.109086 ATCGATGGATGATCCGCGAC 60.109 55.0 24.68 8.59 44.53 5.19 F
1589 2380 0.032678 ATGGATGATCCGCGACTGAC 59.967 55.0 8.23 0.00 40.17 3.51 F
3388 4198 0.035439 GCCTTCGGTTCCAGAATCCA 60.035 55.0 0.00 0.00 0.00 3.41 F
4049 4859 0.107703 TCCACTGCCATTCCATCGAC 60.108 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 2380 0.036732 ATACAGCACACCCACACCAG 59.963 55.0 0.00 0.0 0.0 4.00 R
2998 3800 1.165270 CCCCAGCCTGTAAAACGAAG 58.835 55.0 0.00 0.0 0.0 3.79 R
3450 4260 1.179152 TCGCACCGGATGACTCTTTA 58.821 50.0 9.46 0.0 0.0 1.85 R
4854 5683 0.039618 AGGTCGGTTCATGGCCATTT 59.960 50.0 17.92 0.0 0.0 2.32 R
5982 6878 0.036765 GGTTGTAGGTCATGGTCGCA 60.037 55.0 0.00 0.0 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.234884 CTGGGTTTCGTTTCGTCAGC 59.765 55.000 0.00 0.00 0.00 4.26
171 172 2.229543 TGTTGCCAAATGTCTCTGCATC 59.770 45.455 0.00 0.00 0.00 3.91
180 184 6.127814 CCAAATGTCTCTGCATCAACACTTAT 60.128 38.462 0.00 0.00 0.00 1.73
244 248 2.461897 TTGCGACTCGGTTTGTTTTC 57.538 45.000 0.00 0.00 0.00 2.29
293 327 7.596749 TTTTGGTTTGAGCGTTTTGAAAATA 57.403 28.000 0.00 0.00 0.00 1.40
294 328 6.576551 TTGGTTTGAGCGTTTTGAAAATAC 57.423 33.333 0.00 0.00 0.00 1.89
295 329 5.651530 TGGTTTGAGCGTTTTGAAAATACA 58.348 33.333 0.00 0.00 0.00 2.29
296 330 6.276847 TGGTTTGAGCGTTTTGAAAATACAT 58.723 32.000 0.00 0.00 0.00 2.29
297 331 6.199908 TGGTTTGAGCGTTTTGAAAATACATG 59.800 34.615 0.00 0.00 0.00 3.21
298 332 6.419413 GGTTTGAGCGTTTTGAAAATACATGA 59.581 34.615 0.00 0.00 0.00 3.07
299 333 7.043059 GGTTTGAGCGTTTTGAAAATACATGAA 60.043 33.333 0.00 0.00 0.00 2.57
333 367 3.693578 TGCGATGGCATGTTCAATTCTAA 59.306 39.130 3.81 0.00 46.21 2.10
334 368 4.157472 TGCGATGGCATGTTCAATTCTAAA 59.843 37.500 3.81 0.00 46.21 1.85
335 369 5.163530 TGCGATGGCATGTTCAATTCTAAAT 60.164 36.000 3.81 0.00 46.21 1.40
360 394 7.525688 TTCTAATAGAAGAACTGAATGTGCG 57.474 36.000 0.00 0.00 30.54 5.34
376 410 4.678509 TGTGCGATAAGATGTTTTGGTC 57.321 40.909 0.00 0.00 0.00 4.02
426 550 8.321353 TCTTTCTAGAAGAACTGAAATGGCATA 58.679 33.333 5.12 0.00 33.26 3.14
427 551 9.118300 CTTTCTAGAAGAACTGAAATGGCATAT 57.882 33.333 5.12 0.00 33.26 1.78
438 562 6.321945 ACTGAAATGGCATATTAAGTGCATGA 59.678 34.615 15.09 2.28 44.25 3.07
523 1134 7.978982 AGATTATGGAGAAAAATCACTGTTCG 58.021 34.615 0.00 0.00 33.06 3.95
529 1140 5.795441 GGAGAAAAATCACTGTTCGCAATAC 59.205 40.000 0.00 0.00 0.00 1.89
603 1227 7.604657 TCTCTAAATTTCTGATACTCCCTCC 57.395 40.000 0.00 0.00 0.00 4.30
604 1228 7.366226 TCTCTAAATTTCTGATACTCCCTCCT 58.634 38.462 0.00 0.00 0.00 3.69
605 1229 7.846823 TCTCTAAATTTCTGATACTCCCTCCTT 59.153 37.037 0.00 0.00 0.00 3.36
776 1527 9.665719 TGATTTGATACTGTAAAGCTTCATGTA 57.334 29.630 0.00 1.85 0.00 2.29
791 1542 9.899226 AAGCTTCATGTATTTTTCTACAAACTC 57.101 29.630 0.00 0.00 35.37 3.01
861 1612 2.289506 ACTAAAAAGACACGGAGGGAGC 60.290 50.000 0.00 0.00 0.00 4.70
868 1619 0.824759 ACACGGAGGGAGCATAGAAC 59.175 55.000 0.00 0.00 0.00 3.01
887 1638 5.196695 AGAACTCTTTTGAAGCAAAGAGGT 58.803 37.500 21.62 17.80 35.28 3.85
899 1650 2.517959 CAAAGAGGTCCTGAAATGGCA 58.482 47.619 0.00 0.00 0.00 4.92
901 1652 2.978156 AGAGGTCCTGAAATGGCAAA 57.022 45.000 0.00 0.00 0.00 3.68
994 1755 1.364171 CCTCCGAATCTAGCCACCG 59.636 63.158 0.00 0.00 0.00 4.94
999 1760 1.451936 GAATCTAGCCACCGCCCAT 59.548 57.895 0.00 0.00 34.57 4.00
1119 1880 2.273449 CGGAGCAGGAGGCCAAAT 59.727 61.111 5.01 0.00 46.50 2.32
1250 2024 0.675837 CCGGCATGATAGATGGCCAG 60.676 60.000 13.05 0.00 46.75 4.85
1332 2119 3.068691 TCCCTCGGCCTCGTCTTG 61.069 66.667 0.00 0.00 37.69 3.02
1336 2123 1.738099 CTCGGCCTCGTCTTGGTTG 60.738 63.158 0.00 0.00 37.69 3.77
1368 2155 3.522731 CCCCGCTCTGAGAGACCG 61.523 72.222 14.78 8.08 0.00 4.79
1369 2156 4.200283 CCCGCTCTGAGAGACCGC 62.200 72.222 14.78 0.00 0.00 5.68
1370 2157 4.544689 CCGCTCTGAGAGACCGCG 62.545 72.222 14.78 10.29 38.25 6.46
1487 2278 1.137825 CTGCTCTTCGTCCTCGTCC 59.862 63.158 0.00 0.00 38.33 4.79
1560 2351 3.505680 GGTAACTCACAATGCCATCACAA 59.494 43.478 0.00 0.00 0.00 3.33
1567 2358 3.945921 CACAATGCCATCACAAGAGAGAT 59.054 43.478 0.00 0.00 0.00 2.75
1574 2365 4.581077 CATCACAAGAGAGATCGATGGA 57.419 45.455 0.54 0.00 0.00 3.41
1575 2366 5.136816 CATCACAAGAGAGATCGATGGAT 57.863 43.478 0.54 0.00 34.96 3.41
1577 2368 4.210331 TCACAAGAGAGATCGATGGATGA 58.790 43.478 0.54 0.00 31.51 2.92
1578 2369 4.831710 TCACAAGAGAGATCGATGGATGAT 59.168 41.667 0.54 0.00 31.51 2.45
1580 2371 4.220382 ACAAGAGAGATCGATGGATGATCC 59.780 45.833 0.54 4.05 42.57 3.36
1581 2372 3.016031 AGAGAGATCGATGGATGATCCG 58.984 50.000 0.54 0.00 42.57 4.18
1582 2373 1.476085 AGAGATCGATGGATGATCCGC 59.524 52.381 0.54 0.44 42.57 5.54
1583 2374 0.172127 AGATCGATGGATGATCCGCG 59.828 55.000 17.10 17.10 42.57 6.46
1584 2375 0.171231 GATCGATGGATGATCCGCGA 59.829 55.000 24.49 24.49 45.33 5.87
1585 2376 0.109086 ATCGATGGATGATCCGCGAC 60.109 55.000 24.68 8.59 44.53 5.19
1588 2379 0.315251 GATGGATGATCCGCGACTGA 59.685 55.000 8.23 0.00 40.17 3.41
1589 2380 0.032678 ATGGATGATCCGCGACTGAC 59.967 55.000 8.23 0.00 40.17 3.51
1590 2381 1.037579 TGGATGATCCGCGACTGACT 61.038 55.000 8.23 0.00 40.17 3.41
1591 2382 0.596083 GGATGATCCGCGACTGACTG 60.596 60.000 8.23 0.00 0.00 3.51
1592 2383 0.596083 GATGATCCGCGACTGACTGG 60.596 60.000 8.23 0.00 0.00 4.00
1593 2384 1.323271 ATGATCCGCGACTGACTGGT 61.323 55.000 8.23 0.00 0.00 4.00
1594 2385 1.517257 GATCCGCGACTGACTGGTG 60.517 63.158 8.23 0.00 0.00 4.17
1595 2386 2.214181 GATCCGCGACTGACTGGTGT 62.214 60.000 8.23 0.00 0.00 4.16
1596 2387 2.492449 ATCCGCGACTGACTGGTGTG 62.492 60.000 8.23 0.00 0.00 3.82
1597 2388 2.734723 CGCGACTGACTGGTGTGG 60.735 66.667 0.00 0.00 0.00 4.17
1598 2389 2.357517 GCGACTGACTGGTGTGGG 60.358 66.667 0.00 0.00 0.00 4.61
1601 2392 1.830145 GACTGACTGGTGTGGGTGT 59.170 57.895 0.00 0.00 0.00 4.16
1602 2393 0.532862 GACTGACTGGTGTGGGTGTG 60.533 60.000 0.00 0.00 0.00 3.82
1603 2394 1.893808 CTGACTGGTGTGGGTGTGC 60.894 63.158 0.00 0.00 0.00 4.57
1604 2395 2.329539 CTGACTGGTGTGGGTGTGCT 62.330 60.000 0.00 0.00 0.00 4.40
1605 2396 1.893808 GACTGGTGTGGGTGTGCTG 60.894 63.158 0.00 0.00 0.00 4.41
1607 2398 1.341913 ACTGGTGTGGGTGTGCTGTA 61.342 55.000 0.00 0.00 0.00 2.74
1608 2399 0.036732 CTGGTGTGGGTGTGCTGTAT 59.963 55.000 0.00 0.00 0.00 2.29
1609 2400 0.476338 TGGTGTGGGTGTGCTGTATT 59.524 50.000 0.00 0.00 0.00 1.89
1610 2401 1.165270 GGTGTGGGTGTGCTGTATTC 58.835 55.000 0.00 0.00 0.00 1.75
1611 2402 1.271379 GGTGTGGGTGTGCTGTATTCT 60.271 52.381 0.00 0.00 0.00 2.40
1613 2404 0.804989 GTGGGTGTGCTGTATTCTGC 59.195 55.000 0.00 0.00 38.66 4.26
1614 2405 0.399833 TGGGTGTGCTGTATTCTGCA 59.600 50.000 0.00 0.00 44.05 4.41
1615 2406 1.202867 TGGGTGTGCTGTATTCTGCAA 60.203 47.619 5.49 0.00 46.70 4.08
1617 2408 2.098117 GGGTGTGCTGTATTCTGCAATC 59.902 50.000 5.49 2.80 46.70 2.67
1621 2412 2.416547 GTGCTGTATTCTGCAATCGTGT 59.583 45.455 5.49 0.00 46.70 4.49
1622 2413 3.073678 TGCTGTATTCTGCAATCGTGTT 58.926 40.909 1.38 0.00 43.49 3.32
1705 2504 0.918983 TTCCATGACTGGGATCCCAC 59.081 55.000 30.62 21.19 43.34 4.61
1754 2553 0.955428 TCCAATGCTCTGACGGCAAC 60.955 55.000 0.00 0.00 43.14 4.17
1777 2576 4.859798 CGTGGAGATTCTGTAAGTCTGTTC 59.140 45.833 0.00 0.00 33.76 3.18
1781 2580 7.442666 GTGGAGATTCTGTAAGTCTGTTCTTTT 59.557 37.037 0.00 0.00 33.76 2.27
1782 2581 7.993183 TGGAGATTCTGTAAGTCTGTTCTTTTT 59.007 33.333 0.00 0.00 33.76 1.94
1829 2628 1.228094 TTGACGCAATGCCTCCACA 60.228 52.632 0.00 0.00 0.00 4.17
1830 2629 0.608856 TTGACGCAATGCCTCCACAT 60.609 50.000 0.00 0.00 0.00 3.21
1840 2639 6.514947 GCAATGCCTCCACATGATTATTTAA 58.485 36.000 0.00 0.00 0.00 1.52
1862 2661 2.670905 GTGCCGAATTTTGTAATTGCCC 59.329 45.455 0.00 0.00 34.16 5.36
1881 2680 6.297080 TGCCCACATTGTTCAAATCATATT 57.703 33.333 0.00 0.00 0.00 1.28
1889 2688 7.660617 ACATTGTTCAAATCATATTTGTGCCAA 59.339 29.630 11.09 11.67 0.00 4.52
1995 2795 9.051679 GGTAGTGTATTAATTGTGCATCATGTA 57.948 33.333 0.00 0.00 0.00 2.29
1999 2800 9.225201 GTGTATTAATTGTGCATCATGTACTTG 57.775 33.333 7.44 2.36 33.97 3.16
2083 2884 3.274288 CCTGAGATTGGAAGCCTACAAC 58.726 50.000 0.00 0.00 0.00 3.32
2085 2886 1.666189 GAGATTGGAAGCCTACAACGC 59.334 52.381 0.00 0.00 0.00 4.84
2158 2960 8.539544 AGGTTAATTTAGAATCCCATTGTTTGG 58.460 33.333 0.00 0.00 46.00 3.28
2209 3011 5.817296 CGGTCAGGATAATTCTGAATCACAA 59.183 40.000 2.92 0.00 42.13 3.33
2252 3054 0.321564 ATGTCGCACTTGCAGCCTTA 60.322 50.000 1.48 0.00 42.21 2.69
2319 3121 8.060931 ACACTATATATCATGTGCACCTAGAG 57.939 38.462 15.69 5.73 34.14 2.43
2381 3183 7.119116 ACAAAAATGAAAGGACACAAAAGAACC 59.881 33.333 0.00 0.00 0.00 3.62
2382 3184 5.930837 AATGAAAGGACACAAAAGAACCA 57.069 34.783 0.00 0.00 0.00 3.67
2383 3185 4.712122 TGAAAGGACACAAAAGAACCAC 57.288 40.909 0.00 0.00 0.00 4.16
2834 3636 2.417719 AGGCGTCTCATCTTTCAACAC 58.582 47.619 0.00 0.00 0.00 3.32
2840 3642 4.507756 CGTCTCATCTTTCAACACACAAGA 59.492 41.667 0.00 0.00 0.00 3.02
2916 3718 3.748660 TACATGGATGTGCCCGGCG 62.749 63.158 4.58 0.00 41.89 6.46
2939 3741 4.024809 GCTACTTTTGTGGTCACTCAACTC 60.025 45.833 2.66 0.00 33.11 3.01
2943 3745 0.249447 TGTGGTCACTCAACTCAGCG 60.249 55.000 2.66 0.00 0.00 5.18
2949 3751 2.607635 GTCACTCAACTCAGCGTTCAAA 59.392 45.455 0.00 0.00 32.27 2.69
2952 3754 4.447724 TCACTCAACTCAGCGTTCAAATAC 59.552 41.667 0.00 0.00 32.27 1.89
3109 3911 6.621596 GCATTTTCAGGATGTAGACTCAACAC 60.622 42.308 0.00 0.00 37.40 3.32
3388 4198 0.035439 GCCTTCGGTTCCAGAATCCA 60.035 55.000 0.00 0.00 0.00 3.41
3390 4200 2.158813 GCCTTCGGTTCCAGAATCCATA 60.159 50.000 0.00 0.00 0.00 2.74
3414 4224 4.539152 GTTGATGCTGCAACACCG 57.461 55.556 12.37 0.00 45.65 4.94
3462 4272 4.608948 ATCACCCGATAAAGAGTCATCC 57.391 45.455 0.00 0.00 0.00 3.51
3476 4286 1.107945 TCATCCGGTGCGAAGTATGA 58.892 50.000 0.00 0.00 0.00 2.15
3489 4299 5.350365 TGCGAAGTATGACATTTGGACTTAC 59.650 40.000 0.00 0.00 30.66 2.34
3511 4321 3.738282 CGTCCTCATATTTCTAGCTGCAC 59.262 47.826 1.02 0.00 0.00 4.57
3540 4350 2.340210 TTAGCCTGATTATTGCGCCA 57.660 45.000 4.18 0.00 0.00 5.69
3642 4452 7.331687 GCATTTGTAACAGGCAAACATTCTAAT 59.668 33.333 0.00 0.00 38.44 1.73
3722 4532 6.066690 AGAAATACATGCATAGCCTGACAAT 58.933 36.000 0.00 0.00 0.00 2.71
3729 4539 6.492429 ACATGCATAGCCTGACAATATTTCAT 59.508 34.615 0.00 0.00 0.00 2.57
3775 4585 9.169468 GATACAATTTGTATTTTAGATGCACCG 57.831 33.333 20.14 0.00 43.08 4.94
3790 4600 5.760253 AGATGCACCGGATATTCTTACTTTG 59.240 40.000 9.46 0.00 0.00 2.77
3857 4667 0.332293 TTGAGATGCCATTGCCTCCA 59.668 50.000 0.00 0.00 33.08 3.86
3874 4684 5.587043 TGCCTCCAGGTAATACAATTTAACG 59.413 40.000 0.00 0.00 37.57 3.18
3877 4687 7.469260 CCTCCAGGTAATACAATTTAACGTTG 58.531 38.462 11.99 0.00 0.00 4.10
3890 4700 8.303876 ACAATTTAACGTTGGATAGCTCAATTT 58.696 29.630 11.99 0.00 0.00 1.82
3891 4701 9.781834 CAATTTAACGTTGGATAGCTCAATTTA 57.218 29.630 11.99 0.00 0.00 1.40
3910 4720 8.646004 TCAATTTATTTCATTCAGGTGTTCCAA 58.354 29.630 0.00 0.00 35.89 3.53
4036 4846 3.583806 GAGATCTGTGTTGTCTCCACTG 58.416 50.000 0.00 0.00 33.85 3.66
4042 4852 1.537202 GTGTTGTCTCCACTGCCATTC 59.463 52.381 0.00 0.00 0.00 2.67
4048 4858 0.178767 CTCCACTGCCATTCCATCGA 59.821 55.000 0.00 0.00 0.00 3.59
4049 4859 0.107703 TCCACTGCCATTCCATCGAC 60.108 55.000 0.00 0.00 0.00 4.20
4134 4944 8.767478 TCTAGTAGTAGCCAACAATAAACAAC 57.233 34.615 0.00 0.00 0.00 3.32
4135 4945 8.369424 TCTAGTAGTAGCCAACAATAAACAACA 58.631 33.333 0.00 0.00 0.00 3.33
4136 4946 7.435068 AGTAGTAGCCAACAATAAACAACAG 57.565 36.000 0.00 0.00 0.00 3.16
4137 4947 6.996282 AGTAGTAGCCAACAATAAACAACAGT 59.004 34.615 0.00 0.00 0.00 3.55
4138 4948 6.709018 AGTAGCCAACAATAAACAACAGTT 57.291 33.333 0.00 0.00 0.00 3.16
4139 4949 6.503524 AGTAGCCAACAATAAACAACAGTTG 58.496 36.000 12.03 12.03 39.29 3.16
4141 4951 6.458232 AGCCAACAATAAACAACAGTTGTA 57.542 33.333 19.45 5.34 44.59 2.41
4142 4952 6.503524 AGCCAACAATAAACAACAGTTGTAG 58.496 36.000 19.45 9.62 44.59 2.74
4178 4988 8.754230 ACGTGAATTCTAGTAACCTTTCTAAC 57.246 34.615 7.05 0.00 0.00 2.34
4188 4998 3.451402 ACCTTTCTAACCACCCCATTC 57.549 47.619 0.00 0.00 0.00 2.67
4208 5018 7.038017 CCCATTCCCTTGTGTAGATAGATACAT 60.038 40.741 0.00 0.00 37.93 2.29
4246 5056 5.300286 CCACAAGAACTTTGTCAATCTCCTT 59.700 40.000 0.00 0.00 0.00 3.36
4251 5061 6.310149 AGAACTTTGTCAATCTCCTTGGATT 58.690 36.000 0.00 0.00 36.49 3.01
4279 5089 7.833682 TGCATAGAAAATAAACCCTTCATGAGA 59.166 33.333 0.00 0.00 0.00 3.27
4303 5113 1.842052 TGGTGTACGAGTATGCTCCA 58.158 50.000 5.13 0.00 38.49 3.86
4330 5140 4.391523 GGAACTCTTTCTGAGCATCTTCAC 59.608 45.833 0.00 0.00 46.41 3.18
4378 5190 3.996363 TCCTTGCGCATAAGCTATGTATG 59.004 43.478 12.75 0.00 38.43 2.39
4379 5191 3.748048 CCTTGCGCATAAGCTATGTATGT 59.252 43.478 12.75 0.00 38.43 2.29
4381 5193 4.730600 TGCGCATAAGCTATGTATGTTG 57.269 40.909 5.66 1.53 38.43 3.33
4395 5207 6.908870 ATGTATGTTGTATATATGCGCCTG 57.091 37.500 4.18 0.00 0.00 4.85
4411 5223 3.485877 GCGCCTGCAAACTGAATTACTAG 60.486 47.826 0.00 0.00 42.15 2.57
4448 5260 1.330655 TTGAGGATCTCGACTGGGCC 61.331 60.000 0.00 0.00 34.92 5.80
4509 5321 0.933097 GTACATGCACCATGAGCTCG 59.067 55.000 9.64 0.00 43.81 5.03
4574 5386 2.609427 TGACAGATGACTATGCTGCC 57.391 50.000 0.00 0.00 33.03 4.85
4584 5396 1.070758 ACTATGCTGCCAAGGTATCCG 59.929 52.381 0.00 0.00 0.00 4.18
4594 5406 3.270877 CCAAGGTATCCGTTTGAAGGAG 58.729 50.000 0.00 0.00 41.66 3.69
4604 5418 4.755123 TCCGTTTGAAGGAGATCAGTTTTC 59.245 41.667 0.00 0.00 33.19 2.29
4605 5419 4.515191 CCGTTTGAAGGAGATCAGTTTTCA 59.485 41.667 0.00 0.00 0.00 2.69
4609 5423 6.824305 TTGAAGGAGATCAGTTTTCATTCC 57.176 37.500 0.00 0.00 32.38 3.01
4627 5441 2.594131 TCCTCTTCTGAAACACGGAGA 58.406 47.619 5.47 0.00 35.15 3.71
4633 5448 1.068588 TCTGAAACACGGAGACAGTGG 59.931 52.381 0.00 0.00 43.41 4.00
4647 5462 1.340405 ACAGTGGAGGCATGGTTCATC 60.340 52.381 0.00 0.00 0.00 2.92
4651 5466 2.360165 GTGGAGGCATGGTTCATCAATC 59.640 50.000 0.00 0.00 0.00 2.67
4662 5477 3.375299 GGTTCATCAATCAGCTACCACAC 59.625 47.826 0.00 0.00 0.00 3.82
4668 5483 7.210174 TCATCAATCAGCTACCACACTATAAC 58.790 38.462 0.00 0.00 0.00 1.89
4682 5499 8.107095 ACCACACTATAACTAACAACCATTGAT 58.893 33.333 0.00 0.00 0.00 2.57
4698 5527 4.381612 CCATTGATTGAGTTGCAGATTGCT 60.382 41.667 2.48 0.00 45.31 3.91
4720 5549 3.256383 TGATGTTGGCATGTGGAAAGAAG 59.744 43.478 0.00 0.00 35.07 2.85
4737 5566 1.222115 AAGTCGCGGACAGAGCAAAC 61.222 55.000 6.13 0.00 34.60 2.93
4740 5569 4.090057 GCGGACAGAGCAAACGCC 62.090 66.667 0.00 0.00 44.01 5.68
4761 5590 3.482232 AAAGCAGGACGGCAGCAGT 62.482 57.895 7.71 0.00 35.83 4.40
4854 5683 2.306847 GGAAAGCTTCCTGAACAACCA 58.693 47.619 0.00 0.00 46.57 3.67
4855 5684 2.693074 GGAAAGCTTCCTGAACAACCAA 59.307 45.455 0.00 0.00 46.57 3.67
4856 5685 3.132111 GGAAAGCTTCCTGAACAACCAAA 59.868 43.478 0.00 0.00 46.57 3.28
4868 5697 1.347378 ACAACCAAATGGCCATGAACC 59.653 47.619 21.63 0.00 39.32 3.62
4898 5727 2.819019 TCTGGGTATAACACGACGAACA 59.181 45.455 0.00 0.00 0.00 3.18
4910 5739 2.724358 CGAACAAACCGCGCAACC 60.724 61.111 8.75 0.00 0.00 3.77
4917 5746 4.887190 ACCGCGCAACCCCAAACT 62.887 61.111 8.75 0.00 0.00 2.66
4938 5767 6.313744 ACTTCCAAACTTAATTTCCGACAG 57.686 37.500 0.00 0.00 0.00 3.51
4949 5778 2.711311 CCGACAGCATTGCATCGG 59.289 61.111 28.70 28.70 46.89 4.18
4955 5785 2.158559 ACAGCATTGCATCGGTACAAA 58.841 42.857 11.91 0.00 0.00 2.83
4965 5795 4.083537 TGCATCGGTACAAATGTGAACTTC 60.084 41.667 0.00 0.00 0.00 3.01
4966 5796 4.154195 GCATCGGTACAAATGTGAACTTCT 59.846 41.667 0.00 0.00 0.00 2.85
5007 5837 2.681848 CGAGCATCTCAAAGCCAAGAAT 59.318 45.455 0.00 0.00 0.00 2.40
5010 5840 5.573337 AGCATCTCAAAGCCAAGAATTAC 57.427 39.130 0.00 0.00 0.00 1.89
5012 5842 4.346129 CATCTCAAAGCCAAGAATTACGC 58.654 43.478 0.00 0.00 0.00 4.42
5045 5875 1.734477 CCGTGCTCGAGGAACACAG 60.734 63.158 15.58 9.77 39.71 3.66
5067 5897 4.379243 AACGAGCTGGAGGCCGTG 62.379 66.667 1.44 0.00 43.23 4.94
5135 5965 2.809601 AATGCGAGACGTGACGGC 60.810 61.111 10.66 6.23 33.59 5.68
5158 5988 2.069776 CTCAGGGAGGTTCTTGGCA 58.930 57.895 0.00 0.00 0.00 4.92
5276 6116 3.236632 TGCTGCTGCATATCTATACCG 57.763 47.619 14.93 0.00 45.31 4.02
5312 6153 4.588854 AACGTGCCGTGCCGTGTA 62.589 61.111 10.99 0.00 39.99 2.90
5313 6154 4.588854 ACGTGCCGTGCCGTGTAA 62.589 61.111 9.99 0.00 39.18 2.41
5314 6155 4.067016 CGTGCCGTGCCGTGTAAC 62.067 66.667 0.00 0.00 0.00 2.50
5315 6156 2.968156 GTGCCGTGCCGTGTAACA 60.968 61.111 0.00 0.00 35.74 2.41
5316 6157 2.031314 TGCCGTGCCGTGTAACAT 59.969 55.556 0.00 0.00 35.74 2.71
5320 6161 0.373370 CCGTGCCGTGTAACATCATG 59.627 55.000 0.00 0.00 35.74 3.07
5343 6184 3.437213 TCCCTCTTGATCCTACGAACAA 58.563 45.455 0.00 0.00 30.83 2.83
5377 6218 3.260483 GGCTGAGCGCTGTGATCG 61.260 66.667 18.48 0.00 35.12 3.69
5428 6269 3.741856 CAGATGTGATGCAGCTACTGATC 59.258 47.826 2.53 0.88 42.70 2.92
5432 6273 5.541953 TGTGATGCAGCTACTGATCTAAT 57.458 39.130 2.53 0.00 32.44 1.73
5489 6343 2.487934 CATGGGCATGTACTACTGAGC 58.512 52.381 0.00 0.00 34.23 4.26
5566 6421 3.641906 GGTGCTACTACCTACCATGTGAT 59.358 47.826 0.00 0.00 37.74 3.06
5567 6422 4.262079 GGTGCTACTACCTACCATGTGATC 60.262 50.000 0.00 0.00 37.74 2.92
5589 6444 9.184523 TGATCCTTCAGTTTTTAGTTTCTGAAA 57.815 29.630 0.00 0.00 43.25 2.69
5621 6476 5.296283 CCTGATTCAAAGCTCTGGTGATAAG 59.704 44.000 0.00 0.00 0.00 1.73
5631 6487 4.217550 GCTCTGGTGATAAGCTAGGTCTAG 59.782 50.000 0.00 0.85 36.29 2.43
5714 6610 0.735632 CTGTCTCTCTGTTGCTCGGC 60.736 60.000 0.00 0.00 0.00 5.54
5758 6654 4.574013 CAGAAGCTACTCACCCAATCAATC 59.426 45.833 0.00 0.00 0.00 2.67
5773 6669 8.995577 ACCCAATCAATCAATCAATCCTTTTAT 58.004 29.630 0.00 0.00 0.00 1.40
5799 6695 0.901827 TCCTATCGACAAGCAGCCAA 59.098 50.000 0.00 0.00 0.00 4.52
5807 6703 6.639632 ATCGACAAGCAGCCAAATATTATT 57.360 33.333 0.00 0.00 0.00 1.40
5850 6746 9.620660 CACATTCAGGTGTTATTTTTAACCTAC 57.379 33.333 0.00 0.00 41.14 3.18
5851 6747 9.582648 ACATTCAGGTGTTATTTTTAACCTACT 57.417 29.630 0.00 0.00 41.14 2.57
5853 6749 8.625786 TTCAGGTGTTATTTTTAACCTACTCC 57.374 34.615 0.00 0.00 41.14 3.85
5856 6752 7.336176 CAGGTGTTATTTTTAACCTACTCCCTC 59.664 40.741 0.00 0.00 41.14 4.30
5857 6753 6.600822 GGTGTTATTTTTAACCTACTCCCTCC 59.399 42.308 0.00 0.00 0.00 4.30
5858 6754 6.314648 GTGTTATTTTTAACCTACTCCCTCCG 59.685 42.308 0.00 0.00 0.00 4.63
5859 6755 6.013466 TGTTATTTTTAACCTACTCCCTCCGT 60.013 38.462 0.00 0.00 0.00 4.69
5860 6756 4.980339 TTTTTAACCTACTCCCTCCGTT 57.020 40.909 0.00 0.00 0.00 4.44
5861 6757 4.541973 TTTTAACCTACTCCCTCCGTTC 57.458 45.455 0.00 0.00 0.00 3.95
5863 6759 0.115745 AACCTACTCCCTCCGTTCCA 59.884 55.000 0.00 0.00 0.00 3.53
5865 6761 1.272807 CCTACTCCCTCCGTTCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
5866 6762 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
5867 6763 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
5871 6767 3.329814 ACTCCCTCCGTTCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
5875 6771 4.324267 CCTCCGTTCCAAAATACTTGACT 58.676 43.478 0.00 0.00 0.00 3.41
5876 6772 4.760204 CCTCCGTTCCAAAATACTTGACTT 59.240 41.667 0.00 0.00 0.00 3.01
5877 6773 5.106673 CCTCCGTTCCAAAATACTTGACTTC 60.107 44.000 0.00 0.00 0.00 3.01
5878 6774 4.758165 TCCGTTCCAAAATACTTGACTTCC 59.242 41.667 0.00 0.00 0.00 3.46
5879 6775 4.517453 CCGTTCCAAAATACTTGACTTCCA 59.483 41.667 0.00 0.00 0.00 3.53
5880 6776 5.183140 CCGTTCCAAAATACTTGACTTCCAT 59.817 40.000 0.00 0.00 0.00 3.41
5881 6777 6.294508 CCGTTCCAAAATACTTGACTTCCATT 60.295 38.462 0.00 0.00 0.00 3.16
5882 6778 7.145323 CGTTCCAAAATACTTGACTTCCATTT 58.855 34.615 0.00 0.00 0.00 2.32
5883 6779 7.114811 CGTTCCAAAATACTTGACTTCCATTTG 59.885 37.037 0.00 0.00 0.00 2.32
5884 6780 7.595819 TCCAAAATACTTGACTTCCATTTGT 57.404 32.000 0.00 0.00 0.00 2.83
5885 6781 8.017418 TCCAAAATACTTGACTTCCATTTGTT 57.983 30.769 0.00 0.00 0.00 2.83
5886 6782 8.141268 TCCAAAATACTTGACTTCCATTTGTTC 58.859 33.333 0.00 0.00 0.00 3.18
5887 6783 7.925483 CCAAAATACTTGACTTCCATTTGTTCA 59.075 33.333 0.00 0.00 0.00 3.18
5888 6784 9.311916 CAAAATACTTGACTTCCATTTGTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
5889 6785 9.883142 AAAATACTTGACTTCCATTTGTTCAAA 57.117 25.926 0.44 0.44 0.00 2.69
5890 6786 9.883142 AAATACTTGACTTCCATTTGTTCAAAA 57.117 25.926 2.11 0.00 0.00 2.44
5891 6787 9.883142 AATACTTGACTTCCATTTGTTCAAAAA 57.117 25.926 2.11 0.00 0.00 1.94
5893 6789 8.200364 ACTTGACTTCCATTTGTTCAAAAATG 57.800 30.769 2.11 3.25 43.94 2.32
5904 6800 9.874205 CATTTGTTCAAAAATGGATGTACCTAT 57.126 29.630 2.11 0.00 41.71 2.57
5951 6847 8.362639 ACATCTATATTTTGACAAATGGGATGC 58.637 33.333 18.61 0.00 37.39 3.91
5952 6848 7.894753 TCTATATTTTGACAAATGGGATGCA 57.105 32.000 0.50 0.00 34.29 3.96
5953 6849 8.481492 TCTATATTTTGACAAATGGGATGCAT 57.519 30.769 0.00 0.00 34.29 3.96
5954 6850 8.361889 TCTATATTTTGACAAATGGGATGCATG 58.638 33.333 2.46 0.00 34.29 4.06
5955 6851 4.620589 TTTTGACAAATGGGATGCATGT 57.379 36.364 2.46 0.00 0.00 3.21
5956 6852 5.735285 TTTTGACAAATGGGATGCATGTA 57.265 34.783 2.46 0.00 0.00 2.29
5957 6853 5.936187 TTTGACAAATGGGATGCATGTAT 57.064 34.783 2.46 0.00 0.00 2.29
5958 6854 5.936187 TTGACAAATGGGATGCATGTATT 57.064 34.783 2.46 0.00 0.00 1.89
5959 6855 5.265350 TGACAAATGGGATGCATGTATTG 57.735 39.130 2.46 4.91 0.00 1.90
5960 6856 4.710865 TGACAAATGGGATGCATGTATTGT 59.289 37.500 2.46 8.21 32.89 2.71
5961 6857 5.013568 ACAAATGGGATGCATGTATTGTG 57.986 39.130 2.46 0.00 0.00 3.33
5962 6858 4.141892 ACAAATGGGATGCATGTATTGTGG 60.142 41.667 2.46 0.00 0.00 4.17
5963 6859 3.598693 ATGGGATGCATGTATTGTGGA 57.401 42.857 2.46 0.00 0.00 4.02
5964 6860 3.378861 TGGGATGCATGTATTGTGGAA 57.621 42.857 2.46 0.00 0.00 3.53
5965 6861 3.023119 TGGGATGCATGTATTGTGGAAC 58.977 45.455 2.46 0.00 37.35 3.62
5966 6862 2.033299 GGGATGCATGTATTGTGGAACG 59.967 50.000 2.46 0.00 42.39 3.95
5967 6863 2.033299 GGATGCATGTATTGTGGAACGG 59.967 50.000 2.46 0.00 42.39 4.44
5968 6864 2.481289 TGCATGTATTGTGGAACGGA 57.519 45.000 0.00 0.00 42.39 4.69
5969 6865 2.355197 TGCATGTATTGTGGAACGGAG 58.645 47.619 0.00 0.00 42.39 4.63
5970 6866 1.670811 GCATGTATTGTGGAACGGAGG 59.329 52.381 0.00 0.00 42.39 4.30
5971 6867 2.288666 CATGTATTGTGGAACGGAGGG 58.711 52.381 0.00 0.00 42.39 4.30
5972 6868 1.646912 TGTATTGTGGAACGGAGGGA 58.353 50.000 0.00 0.00 42.39 4.20
5973 6869 1.553248 TGTATTGTGGAACGGAGGGAG 59.447 52.381 0.00 0.00 42.39 4.30
5974 6870 1.553704 GTATTGTGGAACGGAGGGAGT 59.446 52.381 0.00 0.00 42.39 3.85
5975 6871 1.946984 ATTGTGGAACGGAGGGAGTA 58.053 50.000 0.00 0.00 42.39 2.59
5976 6872 1.263356 TTGTGGAACGGAGGGAGTAG 58.737 55.000 0.00 0.00 42.39 2.57
5977 6873 1.255667 TGTGGAACGGAGGGAGTAGC 61.256 60.000 0.00 0.00 42.39 3.58
5978 6874 0.971447 GTGGAACGGAGGGAGTAGCT 60.971 60.000 0.00 0.00 0.00 3.32
5979 6875 0.252103 TGGAACGGAGGGAGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
5980 6876 0.175989 GGAACGGAGGGAGTAGCTTG 59.824 60.000 0.00 0.00 0.00 4.01
5981 6877 0.896226 GAACGGAGGGAGTAGCTTGT 59.104 55.000 0.00 0.00 0.00 3.16
5982 6878 1.275573 GAACGGAGGGAGTAGCTTGTT 59.724 52.381 0.00 0.00 0.00 2.83
5983 6879 0.608640 ACGGAGGGAGTAGCTTGTTG 59.391 55.000 0.00 0.00 0.00 3.33
6055 6958 6.900568 AAAATGAAACAAAAATCAGCGTCA 57.099 29.167 0.00 0.00 0.00 4.35
6058 6961 7.481275 AATGAAACAAAAATCAGCGTCAAAT 57.519 28.000 0.00 0.00 0.00 2.32
6087 6991 5.119898 GTCCAATCGATGAGTATCTTGATGC 59.880 44.000 0.00 0.00 34.92 3.91
6097 7001 0.622136 ATCTTGATGCCACAGCCAGA 59.378 50.000 0.00 0.00 38.69 3.86
6100 7004 0.178995 TTGATGCCACAGCCAGACAA 60.179 50.000 0.00 0.00 38.69 3.18
6101 7005 0.890542 TGATGCCACAGCCAGACAAC 60.891 55.000 0.00 0.00 38.69 3.32
6154 7058 0.945099 GGATTTAGCAGGCTAACCGC 59.055 55.000 12.97 5.98 42.76 5.68
6192 7096 2.593956 GGTCGGGGAAGGAACAGCT 61.594 63.158 0.00 0.00 0.00 4.24
6205 7109 2.550606 GGAACAGCTCGATCTCGTCTAT 59.449 50.000 0.00 0.00 40.80 1.98
6225 7129 0.101219 GGCTGAAACATGCCGATTCC 59.899 55.000 0.00 0.00 39.71 3.01
6278 7184 3.365265 GAACTGGCCACGCAAGGG 61.365 66.667 0.00 0.00 46.39 3.95
6348 7254 7.770201 TGAATGTGACATGAGTTTCAAGAAAA 58.230 30.769 0.00 0.00 31.33 2.29
6371 7277 7.722949 AAAAATAGATTGGATGTGACATGGT 57.277 32.000 1.23 0.00 0.00 3.55
6425 7344 1.670811 CCAAATATGGCACCTGACGTC 59.329 52.381 9.11 9.11 40.58 4.34
6464 7383 0.329596 AGGGTCAATGTCCTGGAAGC 59.670 55.000 0.00 0.00 31.11 3.86
6469 7388 3.416156 GTCAATGTCCTGGAAGCTTCTT 58.584 45.455 25.05 7.67 0.00 2.52
6473 7392 1.275291 TGTCCTGGAAGCTTCTTACCG 59.725 52.381 25.05 9.31 0.00 4.02
6474 7393 0.249398 TCCTGGAAGCTTCTTACCGC 59.751 55.000 25.05 8.65 0.00 5.68
6505 7424 8.829612 CATTTGTCAGCTAAAAATGAAAAAGGT 58.170 29.630 17.02 0.00 41.64 3.50
6523 7445 0.535335 GTTGGACACCTATCGCCAGA 59.465 55.000 0.00 0.00 0.00 3.86
6527 7449 2.213499 GGACACCTATCGCCAGAATTG 58.787 52.381 0.00 0.00 0.00 2.32
6531 7453 3.181471 ACACCTATCGCCAGAATTGAGAG 60.181 47.826 0.00 0.00 0.00 3.20
6579 7501 0.948623 TGTACAGCATGCGTGTGGTC 60.949 55.000 24.18 16.93 42.53 4.02
6580 7502 0.948623 GTACAGCATGCGTGTGGTCA 60.949 55.000 24.18 8.84 42.53 4.02
6581 7503 0.670239 TACAGCATGCGTGTGGTCAG 60.670 55.000 24.18 7.49 42.53 3.51
6582 7504 1.962822 CAGCATGCGTGTGGTCAGT 60.963 57.895 13.01 0.00 0.00 3.41
6583 7505 1.227943 AGCATGCGTGTGGTCAGTT 60.228 52.632 13.01 0.00 0.00 3.16
6584 7506 1.081906 GCATGCGTGTGGTCAGTTG 60.082 57.895 0.00 0.00 0.00 3.16
6585 7507 1.081906 CATGCGTGTGGTCAGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
6586 7508 1.525765 ATGCGTGTGGTCAGTTGCA 60.526 52.632 0.00 0.00 33.92 4.08
6587 7509 0.890542 ATGCGTGTGGTCAGTTGCAT 60.891 50.000 0.00 0.00 35.08 3.96
6588 7510 1.207593 GCGTGTGGTCAGTTGCATC 59.792 57.895 0.00 0.00 0.00 3.91
6589 7511 1.868997 CGTGTGGTCAGTTGCATCC 59.131 57.895 0.00 0.00 0.00 3.51
6590 7512 0.884259 CGTGTGGTCAGTTGCATCCA 60.884 55.000 0.00 0.00 0.00 3.41
6591 7513 0.877071 GTGTGGTCAGTTGCATCCAG 59.123 55.000 0.00 0.00 0.00 3.86
6592 7514 0.764271 TGTGGTCAGTTGCATCCAGA 59.236 50.000 0.00 0.00 0.00 3.86
6593 7515 1.352017 TGTGGTCAGTTGCATCCAGAT 59.648 47.619 0.00 0.00 0.00 2.90
6594 7516 2.012673 GTGGTCAGTTGCATCCAGATC 58.987 52.381 0.00 0.00 0.00 2.75
6595 7517 1.629861 TGGTCAGTTGCATCCAGATCA 59.370 47.619 0.00 0.00 0.00 2.92
6596 7518 2.040145 TGGTCAGTTGCATCCAGATCAA 59.960 45.455 0.00 0.00 0.00 2.57
6597 7519 3.285484 GGTCAGTTGCATCCAGATCAAT 58.715 45.455 0.00 0.00 0.00 2.57
6598 7520 3.066342 GGTCAGTTGCATCCAGATCAATG 59.934 47.826 0.00 0.00 0.00 2.82
6599 7521 3.693085 GTCAGTTGCATCCAGATCAATGT 59.307 43.478 0.00 0.00 0.00 2.71
6600 7522 4.877823 GTCAGTTGCATCCAGATCAATGTA 59.122 41.667 0.00 0.00 0.00 2.29
6601 7523 5.355071 GTCAGTTGCATCCAGATCAATGTAA 59.645 40.000 0.00 0.00 0.00 2.41
6602 7524 5.945191 TCAGTTGCATCCAGATCAATGTAAA 59.055 36.000 0.00 0.00 30.87 2.01
6603 7525 6.433716 TCAGTTGCATCCAGATCAATGTAAAA 59.566 34.615 0.00 0.00 30.87 1.52
6604 7526 6.529125 CAGTTGCATCCAGATCAATGTAAAAC 59.471 38.462 0.00 3.60 30.87 2.43
6605 7527 6.435277 AGTTGCATCCAGATCAATGTAAAACT 59.565 34.615 0.00 5.49 30.87 2.66
6606 7528 6.198650 TGCATCCAGATCAATGTAAAACTG 57.801 37.500 0.00 0.00 0.00 3.16
6607 7529 5.945191 TGCATCCAGATCAATGTAAAACTGA 59.055 36.000 0.00 0.00 0.00 3.41
6608 7530 6.094464 TGCATCCAGATCAATGTAAAACTGAG 59.906 38.462 0.00 0.00 0.00 3.35
6609 7531 6.317140 GCATCCAGATCAATGTAAAACTGAGA 59.683 38.462 0.00 0.00 0.00 3.27
6610 7532 7.148188 GCATCCAGATCAATGTAAAACTGAGAA 60.148 37.037 0.00 0.00 0.00 2.87
6611 7533 8.900781 CATCCAGATCAATGTAAAACTGAGAAT 58.099 33.333 0.00 0.00 0.00 2.40
6612 7534 8.868522 TCCAGATCAATGTAAAACTGAGAATT 57.131 30.769 0.00 0.00 0.00 2.17
6613 7535 9.958180 TCCAGATCAATGTAAAACTGAGAATTA 57.042 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.343101 TGAGCGAAATACCAAACTCCG 58.657 47.619 0.00 0.00 0.00 4.63
93 94 2.794910 AGTTCACATTCACGAAGACACG 59.205 45.455 0.00 0.00 39.31 4.49
154 155 2.229543 TGTTGATGCAGAGACATTTGGC 59.770 45.455 0.00 0.00 0.00 4.52
171 172 2.226437 ACGCAGGAGCAAATAAGTGTTG 59.774 45.455 0.00 0.00 42.27 3.33
180 184 4.314740 AAAATAAACACGCAGGAGCAAA 57.685 36.364 0.00 0.00 42.27 3.68
244 248 4.020128 GGGCCCATCCTACTAGTAGAAATG 60.020 50.000 28.07 25.85 35.21 2.32
293 327 3.695556 TCGCATCCAATTCATGTTCATGT 59.304 39.130 11.73 0.00 0.00 3.21
294 328 4.295857 TCGCATCCAATTCATGTTCATG 57.704 40.909 6.46 6.46 0.00 3.07
295 329 4.261867 CCATCGCATCCAATTCATGTTCAT 60.262 41.667 0.00 0.00 0.00 2.57
296 330 3.067040 CCATCGCATCCAATTCATGTTCA 59.933 43.478 0.00 0.00 0.00 3.18
297 331 3.635331 CCATCGCATCCAATTCATGTTC 58.365 45.455 0.00 0.00 0.00 3.18
298 332 2.223876 GCCATCGCATCCAATTCATGTT 60.224 45.455 0.00 0.00 34.03 2.71
299 333 1.338973 GCCATCGCATCCAATTCATGT 59.661 47.619 0.00 0.00 34.03 3.21
334 368 8.607459 CGCACATTCAGTTCTTCTATTAGAAAT 58.393 33.333 7.51 0.00 36.01 2.17
335 369 7.817478 TCGCACATTCAGTTCTTCTATTAGAAA 59.183 33.333 7.51 0.00 36.01 2.52
341 375 7.492524 TCTTATCGCACATTCAGTTCTTCTAT 58.507 34.615 0.00 0.00 0.00 1.98
359 393 4.387559 TGACACGACCAAAACATCTTATCG 59.612 41.667 0.00 0.00 0.00 2.92
360 394 5.178623 TGTGACACGACCAAAACATCTTATC 59.821 40.000 0.22 0.00 0.00 1.75
376 410 2.158645 TGTGTGTTTTCTGTGTGACACG 59.841 45.455 11.51 6.25 43.93 4.49
494 1102 9.965902 ACAGTGATTTTTCTCCATAATCTAGTT 57.034 29.630 0.00 0.00 31.25 2.24
515 1123 1.990799 TCTCCGTATTGCGAACAGTG 58.009 50.000 0.00 0.00 44.77 3.66
522 1133 3.050619 GGAGTATGTTCTCCGTATTGCG 58.949 50.000 0.00 0.00 43.42 4.85
612 1236 6.370166 AGACAAAGCTTCTATGCAGAGTTAAC 59.630 38.462 8.44 0.00 34.99 2.01
627 1251 7.490402 CAGAAAGTTTGATTCAAGACAAAGCTT 59.510 33.333 0.00 0.00 36.81 3.74
684 1308 7.732593 ACCTATTTGATACTCCTTCTAGATGCT 59.267 37.037 0.00 0.00 0.00 3.79
688 1312 9.931698 TTGTACCTATTTGATACTCCTTCTAGA 57.068 33.333 0.00 0.00 0.00 2.43
830 1581 6.328148 TCCGTGTCTTTTTAGTCCCCATATAT 59.672 38.462 0.00 0.00 0.00 0.86
831 1582 5.662208 TCCGTGTCTTTTTAGTCCCCATATA 59.338 40.000 0.00 0.00 0.00 0.86
832 1583 4.472108 TCCGTGTCTTTTTAGTCCCCATAT 59.528 41.667 0.00 0.00 0.00 1.78
837 1588 2.614734 CCCTCCGTGTCTTTTTAGTCCC 60.615 54.545 0.00 0.00 0.00 4.46
887 1638 2.592102 AGAGCTTTGCCATTTCAGGA 57.408 45.000 0.00 0.00 0.00 3.86
899 1650 3.366374 GCAAACCGCAGAAATAGAGCTTT 60.366 43.478 0.00 0.00 41.79 3.51
901 1652 1.740025 GCAAACCGCAGAAATAGAGCT 59.260 47.619 0.00 0.00 41.79 4.09
977 1738 1.300233 GCGGTGGCTAGATTCGGAG 60.300 63.158 0.00 0.00 35.83 4.63
1129 1890 4.173924 GAGCAGGGAGAGGCAGCC 62.174 72.222 1.84 1.84 0.00 4.85
1138 1899 1.308128 ATGGGTGGATGAGCAGGGA 60.308 57.895 0.00 0.00 0.00 4.20
1140 1901 4.573210 CATGGGTGGATGAGCAGG 57.427 61.111 0.00 0.00 0.00 4.85
1168 1929 1.592669 CTGGTTCCGGCGAGCTATG 60.593 63.158 9.30 0.00 0.00 2.23
1226 2000 0.321919 CATCTATCATGCCGGGTGGG 60.322 60.000 2.18 0.00 39.58 4.61
1228 2002 0.957395 GCCATCTATCATGCCGGGTG 60.957 60.000 2.18 0.00 0.00 4.61
1229 2003 1.376466 GCCATCTATCATGCCGGGT 59.624 57.895 2.18 0.00 0.00 5.28
1318 2104 1.738099 CAACCAAGACGAGGCCGAG 60.738 63.158 0.00 0.00 39.50 4.63
1323 2109 1.006102 ACGAGCAACCAAGACGAGG 60.006 57.895 0.00 0.00 0.00 4.63
1332 2119 1.666189 GGCAGAATAAGACGAGCAACC 59.334 52.381 0.00 0.00 0.00 3.77
1336 2123 0.876342 CGGGGCAGAATAAGACGAGC 60.876 60.000 0.00 0.00 0.00 5.03
1395 2186 4.363990 ACTCGCTGGCTGGACACG 62.364 66.667 0.00 0.00 0.00 4.49
1560 2351 3.016031 CGGATCATCCATCGATCTCTCT 58.984 50.000 4.06 0.00 39.42 3.10
1567 2358 1.172812 AGTCGCGGATCATCCATCGA 61.173 55.000 12.59 12.59 38.33 3.59
1574 2365 1.323271 ACCAGTCAGTCGCGGATCAT 61.323 55.000 6.13 0.00 0.00 2.45
1575 2366 1.977009 ACCAGTCAGTCGCGGATCA 60.977 57.895 6.13 0.00 0.00 2.92
1577 2368 2.276116 ACACCAGTCAGTCGCGGAT 61.276 57.895 6.13 0.00 0.00 4.18
1578 2369 2.910479 ACACCAGTCAGTCGCGGA 60.910 61.111 6.13 0.00 0.00 5.54
1580 2371 2.734723 CCACACCAGTCAGTCGCG 60.735 66.667 0.00 0.00 0.00 5.87
1581 2372 2.357517 CCCACACCAGTCAGTCGC 60.358 66.667 0.00 0.00 0.00 5.19
1582 2373 1.300931 CACCCACACCAGTCAGTCG 60.301 63.158 0.00 0.00 0.00 4.18
1583 2374 0.532862 CACACCCACACCAGTCAGTC 60.533 60.000 0.00 0.00 0.00 3.51
1584 2375 1.526887 CACACCCACACCAGTCAGT 59.473 57.895 0.00 0.00 0.00 3.41
1585 2376 1.893808 GCACACCCACACCAGTCAG 60.894 63.158 0.00 0.00 0.00 3.51
1588 2379 1.341913 TACAGCACACCCACACCAGT 61.342 55.000 0.00 0.00 0.00 4.00
1589 2380 0.036732 ATACAGCACACCCACACCAG 59.963 55.000 0.00 0.00 0.00 4.00
1590 2381 0.476338 AATACAGCACACCCACACCA 59.524 50.000 0.00 0.00 0.00 4.17
1591 2382 1.165270 GAATACAGCACACCCACACC 58.835 55.000 0.00 0.00 0.00 4.16
1592 2383 1.806542 CAGAATACAGCACACCCACAC 59.193 52.381 0.00 0.00 0.00 3.82
1593 2384 1.881925 GCAGAATACAGCACACCCACA 60.882 52.381 0.00 0.00 0.00 4.17
1594 2385 0.804989 GCAGAATACAGCACACCCAC 59.195 55.000 0.00 0.00 0.00 4.61
1595 2386 0.399833 TGCAGAATACAGCACACCCA 59.600 50.000 0.00 0.00 33.81 4.51
1596 2387 1.533625 TTGCAGAATACAGCACACCC 58.466 50.000 0.00 0.00 38.20 4.61
1597 2388 2.223112 CGATTGCAGAATACAGCACACC 60.223 50.000 0.00 0.00 38.20 4.16
1598 2389 2.416547 ACGATTGCAGAATACAGCACAC 59.583 45.455 0.00 0.00 38.20 3.82
1601 2392 2.698803 ACACGATTGCAGAATACAGCA 58.301 42.857 0.00 0.00 36.78 4.41
1602 2393 3.125146 TGAACACGATTGCAGAATACAGC 59.875 43.478 0.00 0.00 0.00 4.40
1603 2394 4.926860 TGAACACGATTGCAGAATACAG 57.073 40.909 0.00 0.00 0.00 2.74
1604 2395 5.063817 CAGATGAACACGATTGCAGAATACA 59.936 40.000 0.00 0.00 0.00 2.29
1605 2396 5.496387 CAGATGAACACGATTGCAGAATAC 58.504 41.667 0.00 0.00 0.00 1.89
1607 2398 3.181503 GCAGATGAACACGATTGCAGAAT 60.182 43.478 0.00 0.00 0.00 2.40
1608 2399 2.160219 GCAGATGAACACGATTGCAGAA 59.840 45.455 0.00 0.00 0.00 3.02
1609 2400 1.733912 GCAGATGAACACGATTGCAGA 59.266 47.619 0.00 0.00 0.00 4.26
1610 2401 1.736126 AGCAGATGAACACGATTGCAG 59.264 47.619 0.00 0.00 34.17 4.41
1611 2402 1.812235 AGCAGATGAACACGATTGCA 58.188 45.000 0.00 0.00 34.17 4.08
1613 2404 3.785486 TCCTAGCAGATGAACACGATTG 58.215 45.455 0.00 0.00 0.00 2.67
1614 2405 4.679373 ATCCTAGCAGATGAACACGATT 57.321 40.909 0.00 0.00 0.00 3.34
1615 2406 4.375272 CAATCCTAGCAGATGAACACGAT 58.625 43.478 0.00 0.00 0.00 3.73
1617 2408 2.868583 CCAATCCTAGCAGATGAACACG 59.131 50.000 0.00 0.00 0.00 4.49
1621 2412 3.939740 AAGCCAATCCTAGCAGATGAA 57.060 42.857 0.00 0.00 0.00 2.57
1622 2413 3.548770 CAAAGCCAATCCTAGCAGATGA 58.451 45.455 0.00 0.00 0.00 2.92
1705 2504 1.926511 GCTGCAGGGATTGTTGTCCG 61.927 60.000 17.12 0.00 39.26 4.79
1754 2553 4.442375 ACAGACTTACAGAATCTCCACG 57.558 45.455 0.00 0.00 0.00 4.94
1795 2594 5.171476 TGCGTCAACATTTGGAAAGAAAAA 58.829 33.333 0.00 0.00 0.00 1.94
1796 2595 4.748892 TGCGTCAACATTTGGAAAGAAAA 58.251 34.783 0.00 0.00 0.00 2.29
1797 2596 4.377839 TGCGTCAACATTTGGAAAGAAA 57.622 36.364 0.00 0.00 0.00 2.52
1798 2597 4.377839 TTGCGTCAACATTTGGAAAGAA 57.622 36.364 0.00 0.00 0.00 2.52
1799 2598 4.297510 CATTGCGTCAACATTTGGAAAGA 58.702 39.130 0.00 0.00 0.00 2.52
1800 2599 3.120923 GCATTGCGTCAACATTTGGAAAG 60.121 43.478 0.00 0.00 0.00 2.62
1801 2600 2.799412 GCATTGCGTCAACATTTGGAAA 59.201 40.909 0.00 0.00 0.00 3.13
1840 2639 3.584834 GGCAATTACAAAATTCGGCACT 58.415 40.909 0.00 0.00 32.87 4.40
1862 2661 7.117956 TGGCACAAATATGATTTGAACAATGTG 59.882 33.333 16.69 6.32 37.93 3.21
2083 2884 2.949451 ACTCACAGTGATCTTAGGCG 57.051 50.000 2.97 0.00 0.00 5.52
2085 2886 9.877178 AGTTAAAATACTCACAGTGATCTTAGG 57.123 33.333 2.97 0.00 0.00 2.69
2177 2979 6.042093 TCAGAATTATCCTGACCGAATAAGCT 59.958 38.462 0.00 0.00 35.89 3.74
2180 2982 8.428852 TGATTCAGAATTATCCTGACCGAATAA 58.571 33.333 0.00 0.00 40.05 1.40
2187 2989 7.182761 CGTTTGTGATTCAGAATTATCCTGAC 58.817 38.462 0.00 0.00 40.05 3.51
2244 3046 1.519408 TTCGAAACCAGTAAGGCTGC 58.481 50.000 0.00 0.00 43.71 5.25
2252 3054 4.582701 TGCATGATTTTTCGAAACCAGT 57.417 36.364 10.79 0.00 0.00 4.00
2302 3104 5.422012 TGAAAGTCTCTAGGTGCACATGATA 59.578 40.000 20.43 4.75 0.00 2.15
2303 3105 4.223700 TGAAAGTCTCTAGGTGCACATGAT 59.776 41.667 20.43 3.71 0.00 2.45
2353 3155 9.712305 TTCTTTTGTGTCCTTTCATTTTTGTAA 57.288 25.926 0.00 0.00 0.00 2.41
2362 3164 4.082845 TGTGGTTCTTTTGTGTCCTTTCA 58.917 39.130 0.00 0.00 0.00 2.69
2363 3165 4.712122 TGTGGTTCTTTTGTGTCCTTTC 57.288 40.909 0.00 0.00 0.00 2.62
2372 3174 3.408634 AGTACCCGATGTGGTTCTTTTG 58.591 45.455 0.00 0.00 39.91 2.44
2376 3178 4.028131 TGAATAGTACCCGATGTGGTTCT 58.972 43.478 0.00 0.00 39.91 3.01
2381 3183 6.982852 AGATAAGTGAATAGTACCCGATGTG 58.017 40.000 0.00 0.00 0.00 3.21
2382 3184 7.005296 AGAGATAAGTGAATAGTACCCGATGT 58.995 38.462 0.00 0.00 0.00 3.06
2383 3185 7.455641 AGAGATAAGTGAATAGTACCCGATG 57.544 40.000 0.00 0.00 0.00 3.84
2534 3336 3.025978 AGCCAATATCACCCAACACATG 58.974 45.455 0.00 0.00 0.00 3.21
2535 3337 3.386932 AGCCAATATCACCCAACACAT 57.613 42.857 0.00 0.00 0.00 3.21
2834 3636 1.370609 CTCAGCAGCTCCATCTTGTG 58.629 55.000 0.00 0.00 0.00 3.33
2916 3718 3.877508 AGTTGAGTGACCACAAAAGTAGC 59.122 43.478 2.78 0.00 0.00 3.58
2939 3741 6.092122 TGAAACCTATGAGTATTTGAACGCTG 59.908 38.462 0.00 0.00 0.00 5.18
2949 3751 9.965902 ACTTTCAGAAATGAAACCTATGAGTAT 57.034 29.630 0.00 0.00 34.51 2.12
2952 3754 9.971922 AAAACTTTCAGAAATGAAACCTATGAG 57.028 29.630 0.00 0.00 34.51 2.90
2998 3800 1.165270 CCCCAGCCTGTAAAACGAAG 58.835 55.000 0.00 0.00 0.00 3.79
3082 3884 4.019411 TGAGTCTACATCCTGAAAATGCCA 60.019 41.667 0.00 0.00 0.00 4.92
3089 3891 5.808366 AAGTGTTGAGTCTACATCCTGAA 57.192 39.130 10.60 0.00 0.00 3.02
3146 3956 6.289834 TCGGTAAAACCTGACAGACAAAATA 58.710 36.000 3.32 0.00 35.66 1.40
3228 4038 1.246056 GCAGATTGCCAGCTTCACCA 61.246 55.000 0.00 0.00 37.42 4.17
3229 4039 1.509923 GCAGATTGCCAGCTTCACC 59.490 57.895 0.00 0.00 37.42 4.02
3268 4078 5.012046 GGATTCCTGTTGAATTTTCCAGGTT 59.988 40.000 14.31 6.95 43.81 3.50
3388 4198 5.496133 GTTGCAGCATCAACATTCTCTAT 57.504 39.130 13.89 0.00 44.18 1.98
3390 4200 3.844577 GTTGCAGCATCAACATTCTCT 57.155 42.857 13.89 0.00 44.18 3.10
3445 4255 1.687123 ACCGGATGACTCTTTATCGGG 59.313 52.381 9.46 0.00 44.67 5.14
3446 4256 2.743938 CACCGGATGACTCTTTATCGG 58.256 52.381 9.46 0.00 0.00 4.18
3450 4260 1.179152 TCGCACCGGATGACTCTTTA 58.821 50.000 9.46 0.00 0.00 1.85
3462 4272 2.223021 CCAAATGTCATACTTCGCACCG 60.223 50.000 0.00 0.00 0.00 4.94
3489 4299 3.738282 GTGCAGCTAGAAATATGAGGACG 59.262 47.826 0.00 0.00 0.00 4.79
3540 4350 1.673033 CGCTTCCGACAGACCAAGATT 60.673 52.381 0.00 0.00 36.29 2.40
3699 4509 5.756195 TTGTCAGGCTATGCATGTATTTC 57.244 39.130 10.16 0.00 41.32 2.17
3722 4532 6.375174 CAGAAGACCCACATGTTCATGAAATA 59.625 38.462 17.96 2.76 0.00 1.40
3729 4539 2.437651 TCACAGAAGACCCACATGTTCA 59.562 45.455 0.00 0.00 0.00 3.18
3767 4577 5.758296 TCAAAGTAAGAATATCCGGTGCATC 59.242 40.000 0.00 0.00 0.00 3.91
3775 4585 6.374333 TGTGCCAGTTCAAAGTAAGAATATCC 59.626 38.462 0.00 0.00 0.00 2.59
3790 4600 1.669779 GAGCTGATCATGTGCCAGTTC 59.330 52.381 0.00 10.60 32.62 3.01
3857 4667 8.833493 GCTATCCAACGTTAAATTGTATTACCT 58.167 33.333 0.00 0.00 0.00 3.08
3877 4687 8.854117 ACCTGAATGAAATAAATTGAGCTATCC 58.146 33.333 0.00 0.00 0.00 2.59
3890 4700 5.774690 AGCTTTGGAACACCTGAATGAAATA 59.225 36.000 0.00 0.00 39.29 1.40
3891 4701 4.590222 AGCTTTGGAACACCTGAATGAAAT 59.410 37.500 0.00 0.00 39.29 2.17
3910 4720 5.961396 TCGAGTTCTAGTCTGTTTAGCTT 57.039 39.130 0.00 0.00 0.00 3.74
4008 4818 1.200252 ACAACACAGATCTCGACTCCG 59.800 52.381 0.00 0.00 37.07 4.63
4036 4846 0.107214 TCCTTGGTCGATGGAATGGC 60.107 55.000 0.00 0.00 0.00 4.40
4042 4852 4.941609 CCACTCCTTGGTCGATGG 57.058 61.111 0.00 0.00 41.10 3.51
4097 4907 5.049267 GGCTACTACTAGAAGATGTTCGGAG 60.049 48.000 0.00 1.93 37.79 4.63
4178 4988 0.701731 TACACAAGGGAATGGGGTGG 59.298 55.000 0.00 0.00 33.91 4.61
4188 4998 7.726216 TGACAATGTATCTATCTACACAAGGG 58.274 38.462 0.00 0.00 34.59 3.95
4208 5018 4.214986 TCTTGTGGTTGACTCTTGACAA 57.785 40.909 0.00 0.00 0.00 3.18
4246 5056 8.144862 AGGGTTTATTTTCTATGCAAAATCCA 57.855 30.769 7.96 0.00 37.23 3.41
4251 5061 8.811017 TCATGAAGGGTTTATTTTCTATGCAAA 58.189 29.630 0.00 0.00 0.00 3.68
4279 5089 4.501571 GGAGCATACTCGTACACCATCATT 60.502 45.833 0.00 0.00 44.48 2.57
4303 5113 5.568392 AGATGCTCAGAAAGAGTTCCATTT 58.432 37.500 0.00 0.00 46.47 2.32
4355 5167 2.487934 ACATAGCTTATGCGCAAGGAG 58.512 47.619 17.11 13.92 45.13 3.69
4389 5201 1.200020 AGTAATTCAGTTTGCAGGCGC 59.800 47.619 0.00 0.00 39.24 6.53
4395 5207 3.242446 GCGAGGCTAGTAATTCAGTTTGC 60.242 47.826 0.00 0.00 0.00 3.68
4448 5260 3.415237 GATGATCCTCATCCTCGCG 57.585 57.895 0.00 0.00 45.66 5.87
4574 5386 4.202245 TCTCCTTCAAACGGATACCTTG 57.798 45.455 0.00 0.00 0.00 3.61
4584 5396 7.040132 AGGAATGAAAACTGATCTCCTTCAAAC 60.040 37.037 0.00 0.00 30.37 2.93
4594 5406 7.678947 TTCAGAAGAGGAATGAAAACTGATC 57.321 36.000 0.00 0.00 34.07 2.92
4604 5418 3.664107 TCCGTGTTTCAGAAGAGGAATG 58.336 45.455 0.00 0.00 0.00 2.67
4605 5419 3.578716 TCTCCGTGTTTCAGAAGAGGAAT 59.421 43.478 0.00 0.00 0.00 3.01
4609 5423 3.243569 ACTGTCTCCGTGTTTCAGAAGAG 60.244 47.826 0.00 0.00 0.00 2.85
4627 5441 0.700564 ATGAACCATGCCTCCACTGT 59.299 50.000 0.00 0.00 0.00 3.55
4633 5448 2.034305 GCTGATTGATGAACCATGCCTC 59.966 50.000 0.00 0.00 0.00 4.70
4647 5462 7.979537 TGTTAGTTATAGTGTGGTAGCTGATTG 59.020 37.037 0.00 0.00 0.00 2.67
4651 5466 6.534079 GGTTGTTAGTTATAGTGTGGTAGCTG 59.466 42.308 0.00 0.00 0.00 4.24
4668 5483 5.771469 TGCAACTCAATCAATGGTTGTTAG 58.229 37.500 6.10 0.00 39.94 2.34
4698 5527 2.874014 TCTTTCCACATGCCAACATCA 58.126 42.857 0.00 0.00 32.87 3.07
4720 5549 2.853914 GTTTGCTCTGTCCGCGAC 59.146 61.111 8.23 4.50 0.00 5.19
4740 5569 4.093952 CTGCCGTCCTGCTTTGCG 62.094 66.667 0.00 0.00 0.00 4.85
4767 5596 2.203422 AGATCGGGAGGAGGCTCG 60.203 66.667 8.69 0.00 0.00 5.03
4770 5599 3.984749 GCGAGATCGGGAGGAGGC 61.985 72.222 4.18 0.00 40.23 4.70
4790 5619 2.097038 CCGAAGCAGAAGACGCTGG 61.097 63.158 0.00 0.00 40.35 4.85
4816 5645 1.895798 TCCGGATATGATCTCCAGCAC 59.104 52.381 0.00 0.00 32.72 4.40
4850 5679 0.607620 CGGTTCATGGCCATTTGGTT 59.392 50.000 17.92 0.00 37.57 3.67
4852 5681 0.173255 GTCGGTTCATGGCCATTTGG 59.827 55.000 17.92 5.17 38.53 3.28
4853 5682 0.173255 GGTCGGTTCATGGCCATTTG 59.827 55.000 17.92 7.95 0.00 2.32
4854 5683 0.039618 AGGTCGGTTCATGGCCATTT 59.960 50.000 17.92 0.00 0.00 2.32
4855 5684 0.680921 CAGGTCGGTTCATGGCCATT 60.681 55.000 17.92 0.00 0.00 3.16
4856 5685 1.077501 CAGGTCGGTTCATGGCCAT 60.078 57.895 14.09 14.09 0.00 4.40
4868 5697 2.102420 TGTTATACCCAGATGCAGGTCG 59.898 50.000 0.00 0.00 37.59 4.79
4898 5727 3.148279 TTTGGGGTTGCGCGGTTT 61.148 55.556 8.83 0.00 0.00 3.27
4910 5739 5.694458 CGGAAATTAAGTTTGGAAGTTTGGG 59.306 40.000 0.00 0.00 0.00 4.12
4917 5746 4.580995 TGCTGTCGGAAATTAAGTTTGGAA 59.419 37.500 0.00 0.00 0.00 3.53
4938 5767 2.853594 CACATTTGTACCGATGCAATGC 59.146 45.455 0.00 0.00 29.85 3.56
4949 5778 6.417930 GGCAGAAAAGAAGTTCACATTTGTAC 59.582 38.462 5.50 0.00 0.00 2.90
4955 5785 2.030805 GCGGCAGAAAAGAAGTTCACAT 60.031 45.455 5.50 0.00 0.00 3.21
4987 5817 4.715527 AATTCTTGGCTTTGAGATGCTC 57.284 40.909 0.00 0.00 0.00 4.26
5012 5842 4.813526 CGGTGTCGACGAGCTCGG 62.814 72.222 36.93 21.94 43.16 4.63
5028 5858 1.734477 CCTGTGTTCCTCGAGCACG 60.734 63.158 6.99 0.00 44.63 5.34
5045 5875 4.785453 CCTCCAGCTCGTTGGCCC 62.785 72.222 0.00 0.00 38.16 5.80
5135 5965 0.610687 AAGAACCTCCCTGAGCTTCG 59.389 55.000 0.00 0.00 31.69 3.79
5136 5966 1.339535 CCAAGAACCTCCCTGAGCTTC 60.340 57.143 0.00 0.00 0.00 3.86
5205 6035 0.803117 TGGACAGTAACTCGAGCTCG 59.197 55.000 30.03 30.03 41.45 5.03
5269 6109 2.750712 CCCACCCAAACAAACGGTATAG 59.249 50.000 0.00 0.00 0.00 1.31
5276 6116 1.145156 GGTGCCCACCCAAACAAAC 59.855 57.895 6.16 0.00 45.68 2.93
5306 6147 3.070159 AGAGGGATCATGATGTTACACGG 59.930 47.826 14.30 0.00 0.00 4.94
5307 6148 4.327982 AGAGGGATCATGATGTTACACG 57.672 45.455 14.30 0.00 0.00 4.49
5308 6149 5.674525 TCAAGAGGGATCATGATGTTACAC 58.325 41.667 14.30 0.00 0.00 2.90
5309 6150 5.955961 TCAAGAGGGATCATGATGTTACA 57.044 39.130 14.30 0.00 0.00 2.41
5310 6151 5.936956 GGATCAAGAGGGATCATGATGTTAC 59.063 44.000 14.30 0.00 44.38 2.50
5311 6152 5.848369 AGGATCAAGAGGGATCATGATGTTA 59.152 40.000 14.30 0.00 44.38 2.41
5312 6153 4.664064 AGGATCAAGAGGGATCATGATGTT 59.336 41.667 14.30 0.00 44.38 2.71
5313 6154 4.241151 AGGATCAAGAGGGATCATGATGT 58.759 43.478 14.30 0.00 44.38 3.06
5314 6155 4.912317 AGGATCAAGAGGGATCATGATG 57.088 45.455 14.30 0.00 44.38 3.07
5315 6156 4.465660 CGTAGGATCAAGAGGGATCATGAT 59.534 45.833 8.25 8.25 44.38 2.45
5316 6157 3.829026 CGTAGGATCAAGAGGGATCATGA 59.171 47.826 0.00 0.00 44.38 3.07
5320 6161 3.637229 TGTTCGTAGGATCAAGAGGGATC 59.363 47.826 0.00 0.00 42.36 3.36
5343 6184 3.568007 TCAGCCAAAGTTTACAGCGAAAT 59.432 39.130 0.00 0.00 0.00 2.17
5428 6269 8.453320 TGAGTAAAGATCAACATGTGCAATTAG 58.547 33.333 0.00 0.00 0.00 1.73
5432 6273 6.486320 TCTTGAGTAAAGATCAACATGTGCAA 59.514 34.615 0.00 0.00 40.09 4.08
5515 6370 7.566868 GCACTTGTTCGATTTCATTTTTACACC 60.567 37.037 0.00 0.00 0.00 4.16
5516 6371 7.273659 GCACTTGTTCGATTTCATTTTTACAC 58.726 34.615 0.00 0.00 0.00 2.90
5519 6374 6.640499 CAGGCACTTGTTCGATTTCATTTTTA 59.360 34.615 0.00 0.00 34.60 1.52
5520 6375 5.463061 CAGGCACTTGTTCGATTTCATTTTT 59.537 36.000 0.00 0.00 34.60 1.94
5521 6376 4.984161 CAGGCACTTGTTCGATTTCATTTT 59.016 37.500 0.00 0.00 34.60 1.82
5522 6377 4.549458 CAGGCACTTGTTCGATTTCATTT 58.451 39.130 0.00 0.00 34.60 2.32
5523 6378 3.057315 CCAGGCACTTGTTCGATTTCATT 60.057 43.478 0.00 0.00 34.60 2.57
5525 6380 1.879380 CCAGGCACTTGTTCGATTTCA 59.121 47.619 0.00 0.00 34.60 2.69
5526 6381 1.880027 ACCAGGCACTTGTTCGATTTC 59.120 47.619 0.00 0.00 34.60 2.17
5529 6384 1.237285 GCACCAGGCACTTGTTCGAT 61.237 55.000 0.00 0.00 43.97 3.59
5589 6444 5.821470 CAGAGCTTTGAATCAGGTGTCATAT 59.179 40.000 0.00 0.00 0.00 1.78
5594 6449 2.107204 ACCAGAGCTTTGAATCAGGTGT 59.893 45.455 5.68 0.00 34.38 4.16
5649 6505 9.472361 GAAATGGATGAATTGTCATATGGAAAG 57.528 33.333 2.13 0.00 44.83 2.62
5681 6541 4.102367 AGAGAGACAGGCAAGAAAAGAACT 59.898 41.667 0.00 0.00 0.00 3.01
5714 6610 3.124466 TGAATACTTGGTGCACGATTTCG 59.876 43.478 11.45 0.00 46.33 3.46
5773 6669 4.686972 CTGCTTGTCGATAGGAGAAATCA 58.313 43.478 11.85 0.00 33.38 2.57
5775 6671 3.462021 GCTGCTTGTCGATAGGAGAAAT 58.538 45.455 18.70 0.00 33.38 2.17
5777 6673 1.137086 GGCTGCTTGTCGATAGGAGAA 59.863 52.381 18.70 0.00 33.38 2.87
5779 6675 0.461548 TGGCTGCTTGTCGATAGGAG 59.538 55.000 12.62 12.62 34.55 3.69
5781 6677 1.737838 TTTGGCTGCTTGTCGATAGG 58.262 50.000 0.00 0.00 0.00 2.57
5824 6720 9.620660 GTAGGTTAAAAATAACACCTGAATGTG 57.379 33.333 0.00 0.00 40.06 3.21
5825 6721 9.582648 AGTAGGTTAAAAATAACACCTGAATGT 57.417 29.630 0.00 0.00 40.06 2.71
5850 6746 3.629142 AGTATTTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
5851 6747 3.328343 TCAAGTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
5852 6748 3.439129 GTCAAGTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
5853 6749 4.324267 AGTCAAGTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
5856 6752 4.517453 TGGAAGTCAAGTATTTTGGAACGG 59.483 41.667 0.00 0.00 0.00 4.44
5857 6753 5.682943 TGGAAGTCAAGTATTTTGGAACG 57.317 39.130 0.00 0.00 0.00 3.95
5858 6754 7.926018 ACAAATGGAAGTCAAGTATTTTGGAAC 59.074 33.333 0.00 0.00 29.41 3.62
5859 6755 8.017418 ACAAATGGAAGTCAAGTATTTTGGAA 57.983 30.769 0.00 0.00 29.41 3.53
5860 6756 7.595819 ACAAATGGAAGTCAAGTATTTTGGA 57.404 32.000 0.00 0.00 29.41 3.53
5861 6757 7.925483 TGAACAAATGGAAGTCAAGTATTTTGG 59.075 33.333 0.00 0.00 29.41 3.28
5863 6759 9.883142 TTTGAACAAATGGAAGTCAAGTATTTT 57.117 25.926 0.00 0.00 0.00 1.82
5865 6761 9.883142 TTTTTGAACAAATGGAAGTCAAGTATT 57.117 25.926 0.82 0.00 0.00 1.89
5867 6763 9.311916 CATTTTTGAACAAATGGAAGTCAAGTA 57.688 29.630 0.82 0.00 39.53 2.24
5878 6774 9.874205 ATAGGTACATCCATTTTTGAACAAATG 57.126 29.630 0.00 0.04 41.86 2.32
5925 6821 8.362639 GCATCCCATTTGTCAAAATATAGATGT 58.637 33.333 18.37 0.00 37.64 3.06
5926 6822 8.361889 TGCATCCCATTTGTCAAAATATAGATG 58.638 33.333 1.31 11.02 37.96 2.90
5927 6823 8.481492 TGCATCCCATTTGTCAAAATATAGAT 57.519 30.769 1.31 0.00 34.14 1.98
5928 6824 7.894753 TGCATCCCATTTGTCAAAATATAGA 57.105 32.000 1.31 0.00 34.14 1.98
5929 6825 8.145767 ACATGCATCCCATTTGTCAAAATATAG 58.854 33.333 1.31 0.00 34.14 1.31
5930 6826 8.020777 ACATGCATCCCATTTGTCAAAATATA 57.979 30.769 1.31 0.00 34.14 0.86
5931 6827 6.891388 ACATGCATCCCATTTGTCAAAATAT 58.109 32.000 1.31 0.00 34.14 1.28
5932 6828 6.297080 ACATGCATCCCATTTGTCAAAATA 57.703 33.333 1.31 0.00 34.14 1.40
5933 6829 5.168647 ACATGCATCCCATTTGTCAAAAT 57.831 34.783 1.31 0.00 36.39 1.82
5934 6830 4.620589 ACATGCATCCCATTTGTCAAAA 57.379 36.364 1.31 0.00 29.71 2.44
5935 6831 5.936187 ATACATGCATCCCATTTGTCAAA 57.064 34.783 0.00 0.00 29.71 2.69
5936 6832 5.187381 ACAATACATGCATCCCATTTGTCAA 59.813 36.000 0.00 0.00 30.42 3.18
5937 6833 4.710865 ACAATACATGCATCCCATTTGTCA 59.289 37.500 0.00 0.00 30.42 3.58
5938 6834 5.045215 CACAATACATGCATCCCATTTGTC 58.955 41.667 0.00 0.00 32.71 3.18
5939 6835 4.141892 CCACAATACATGCATCCCATTTGT 60.142 41.667 0.00 0.27 34.39 2.83
5940 6836 4.099727 TCCACAATACATGCATCCCATTTG 59.900 41.667 0.00 0.00 29.71 2.32
5941 6837 4.288398 TCCACAATACATGCATCCCATTT 58.712 39.130 0.00 0.00 29.71 2.32
5942 6838 3.913509 TCCACAATACATGCATCCCATT 58.086 40.909 0.00 0.00 29.71 3.16
5943 6839 3.598693 TCCACAATACATGCATCCCAT 57.401 42.857 0.00 0.00 33.39 4.00
5944 6840 3.023119 GTTCCACAATACATGCATCCCA 58.977 45.455 0.00 0.00 0.00 4.37
5945 6841 2.033299 CGTTCCACAATACATGCATCCC 59.967 50.000 0.00 0.00 0.00 3.85
5946 6842 2.033299 CCGTTCCACAATACATGCATCC 59.967 50.000 0.00 0.00 0.00 3.51
5947 6843 2.942376 TCCGTTCCACAATACATGCATC 59.058 45.455 0.00 0.00 0.00 3.91
5948 6844 2.945008 CTCCGTTCCACAATACATGCAT 59.055 45.455 0.00 0.00 0.00 3.96
5949 6845 2.355197 CTCCGTTCCACAATACATGCA 58.645 47.619 0.00 0.00 0.00 3.96
5950 6846 1.670811 CCTCCGTTCCACAATACATGC 59.329 52.381 0.00 0.00 0.00 4.06
5951 6847 2.093181 TCCCTCCGTTCCACAATACATG 60.093 50.000 0.00 0.00 0.00 3.21
5952 6848 2.170607 CTCCCTCCGTTCCACAATACAT 59.829 50.000 0.00 0.00 0.00 2.29
5953 6849 1.553248 CTCCCTCCGTTCCACAATACA 59.447 52.381 0.00 0.00 0.00 2.29
5954 6850 1.553704 ACTCCCTCCGTTCCACAATAC 59.446 52.381 0.00 0.00 0.00 1.89
5955 6851 1.946984 ACTCCCTCCGTTCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
5956 6852 1.831736 CTACTCCCTCCGTTCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
5957 6853 1.263356 CTACTCCCTCCGTTCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
5958 6854 1.255667 GCTACTCCCTCCGTTCCACA 61.256 60.000 0.00 0.00 0.00 4.17
5959 6855 0.971447 AGCTACTCCCTCCGTTCCAC 60.971 60.000 0.00 0.00 0.00 4.02
5960 6856 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
5961 6857 0.175989 CAAGCTACTCCCTCCGTTCC 59.824 60.000 0.00 0.00 0.00 3.62
5962 6858 0.896226 ACAAGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
5963 6859 1.002087 CAACAAGCTACTCCCTCCGTT 59.998 52.381 0.00 0.00 0.00 4.44
5964 6860 0.608640 CAACAAGCTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
5965 6861 0.741221 GCAACAAGCTACTCCCTCCG 60.741 60.000 0.00 0.00 41.15 4.63
5966 6862 0.741221 CGCAACAAGCTACTCCCTCC 60.741 60.000 0.00 0.00 42.61 4.30
5967 6863 0.246635 TCGCAACAAGCTACTCCCTC 59.753 55.000 0.00 0.00 42.61 4.30
5968 6864 0.037232 GTCGCAACAAGCTACTCCCT 60.037 55.000 0.00 0.00 42.61 4.20
5969 6865 1.019805 GGTCGCAACAAGCTACTCCC 61.020 60.000 0.00 0.00 42.61 4.30
5970 6866 0.320421 TGGTCGCAACAAGCTACTCC 60.320 55.000 0.00 0.00 42.61 3.85
5971 6867 1.394917 CATGGTCGCAACAAGCTACTC 59.605 52.381 0.00 0.00 42.61 2.59
5972 6868 1.001974 TCATGGTCGCAACAAGCTACT 59.998 47.619 0.00 0.00 42.61 2.57
5973 6869 1.128692 GTCATGGTCGCAACAAGCTAC 59.871 52.381 0.00 0.00 42.61 3.58
5974 6870 1.438651 GTCATGGTCGCAACAAGCTA 58.561 50.000 0.00 0.00 42.61 3.32
5975 6871 1.237285 GGTCATGGTCGCAACAAGCT 61.237 55.000 0.00 0.00 42.61 3.74
5976 6872 1.210155 GGTCATGGTCGCAACAAGC 59.790 57.895 0.00 0.00 40.87 4.01
5977 6873 1.732259 GTAGGTCATGGTCGCAACAAG 59.268 52.381 0.00 0.00 0.00 3.16
5978 6874 1.070914 TGTAGGTCATGGTCGCAACAA 59.929 47.619 0.00 0.00 0.00 2.83
5979 6875 0.682292 TGTAGGTCATGGTCGCAACA 59.318 50.000 0.00 0.00 0.00 3.33
5980 6876 1.463444 GTTGTAGGTCATGGTCGCAAC 59.537 52.381 0.00 3.99 0.00 4.17
5981 6877 1.609580 GGTTGTAGGTCATGGTCGCAA 60.610 52.381 0.00 0.00 0.00 4.85
5982 6878 0.036765 GGTTGTAGGTCATGGTCGCA 60.037 55.000 0.00 0.00 0.00 5.10
5983 6879 0.036765 TGGTTGTAGGTCATGGTCGC 60.037 55.000 0.00 0.00 0.00 5.19
6037 6933 9.305110 CATAAATTTGACGCTGATTTTTGTTTC 57.695 29.630 0.00 0.00 0.00 2.78
6038 6934 8.825745 ACATAAATTTGACGCTGATTTTTGTTT 58.174 25.926 0.00 0.00 33.92 2.83
6039 6935 8.364129 ACATAAATTTGACGCTGATTTTTGTT 57.636 26.923 0.00 0.00 33.92 2.83
6048 6951 4.730042 CGATTGGACATAAATTTGACGCTG 59.270 41.667 0.00 0.00 0.00 5.18
6055 6958 9.784531 AGATACTCATCGATTGGACATAAATTT 57.215 29.630 0.00 0.00 36.20 1.82
6058 6961 8.421002 TCAAGATACTCATCGATTGGACATAAA 58.579 33.333 0.00 0.00 36.20 1.40
6087 6991 0.599558 CCATTGTTGTCTGGCTGTGG 59.400 55.000 0.00 0.00 0.00 4.17
6097 7001 3.149196 ACATTTCTCTCGCCATTGTTGT 58.851 40.909 0.00 0.00 0.00 3.32
6100 7004 2.002586 CGACATTTCTCTCGCCATTGT 58.997 47.619 0.00 0.00 0.00 2.71
6101 7005 2.002586 ACGACATTTCTCTCGCCATTG 58.997 47.619 0.00 0.00 32.98 2.82
6107 7011 1.550065 ATCGCACGACATTTCTCTCG 58.450 50.000 0.00 0.00 35.96 4.04
6132 7036 2.679639 CGGTTAGCCTGCTAAATCCACA 60.680 50.000 12.85 0.00 39.82 4.17
6154 7058 1.708193 ATGTGATCGGCGCATGTGTG 61.708 55.000 10.83 1.17 45.57 3.82
6192 7096 2.256117 TCAGCCATAGACGAGATCGA 57.744 50.000 9.58 0.00 43.02 3.59
6225 7129 3.548668 TCTGCGGTATATTTTCGACAACG 59.451 43.478 0.00 0.00 41.26 4.10
6258 7164 1.576421 CTTGCGTGGCCAGTTCTTC 59.424 57.895 5.11 0.00 0.00 2.87
6278 7184 0.107214 TCCAATCCATCCCGTTCTGC 60.107 55.000 0.00 0.00 0.00 4.26
6348 7254 6.891361 TCACCATGTCACATCCAATCTATTTT 59.109 34.615 0.00 0.00 0.00 1.82
6371 7277 3.900966 ATACAGAGAATGCAGCACTCA 57.099 42.857 6.63 0.00 33.69 3.41
6425 7344 4.499183 CCTAGTTTAGTCTCTTGCCACAG 58.501 47.826 0.00 0.00 0.00 3.66
6464 7383 1.396996 CAAATGGACGGCGGTAAGAAG 59.603 52.381 13.24 0.00 0.00 2.85
6469 7388 0.390603 CTGACAAATGGACGGCGGTA 60.391 55.000 13.24 0.00 0.00 4.02
6473 7392 1.448985 TTAGCTGACAAATGGACGGC 58.551 50.000 0.00 0.00 36.33 5.68
6474 7393 4.497473 TTTTTAGCTGACAAATGGACGG 57.503 40.909 0.00 0.00 0.00 4.79
6505 7424 1.271856 TTCTGGCGATAGGTGTCCAA 58.728 50.000 0.00 0.00 0.00 3.53
6517 7439 3.854666 TCTTTCTCTCTCAATTCTGGCG 58.145 45.455 0.00 0.00 0.00 5.69
6523 7445 7.445707 GGTGGTACTTTTCTTTCTCTCTCAATT 59.554 37.037 0.00 0.00 0.00 2.32
6527 7449 5.929415 CAGGTGGTACTTTTCTTTCTCTCTC 59.071 44.000 0.00 0.00 0.00 3.20
6531 7453 6.568653 GCATTCAGGTGGTACTTTTCTTTCTC 60.569 42.308 0.00 0.00 0.00 2.87
6579 7501 5.823209 TTACATTGATCTGGATGCAACTG 57.177 39.130 0.00 0.00 0.00 3.16
6580 7502 6.435277 AGTTTTACATTGATCTGGATGCAACT 59.565 34.615 0.00 3.66 0.00 3.16
6581 7503 6.529125 CAGTTTTACATTGATCTGGATGCAAC 59.471 38.462 0.00 0.00 0.00 4.17
6582 7504 6.433716 TCAGTTTTACATTGATCTGGATGCAA 59.566 34.615 0.00 0.00 0.00 4.08
6583 7505 5.945191 TCAGTTTTACATTGATCTGGATGCA 59.055 36.000 0.00 0.00 0.00 3.96
6584 7506 6.317140 TCTCAGTTTTACATTGATCTGGATGC 59.683 38.462 0.00 0.00 0.00 3.91
6585 7507 7.854557 TCTCAGTTTTACATTGATCTGGATG 57.145 36.000 0.00 0.00 0.00 3.51
6586 7508 9.471702 AATTCTCAGTTTTACATTGATCTGGAT 57.528 29.630 0.00 0.00 0.00 3.41
6587 7509 8.868522 AATTCTCAGTTTTACATTGATCTGGA 57.131 30.769 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.