Multiple sequence alignment - TraesCS3A01G135100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G135100 chr3A 100.000 3773 0 0 1 3773 112935674 112939446 0.000000e+00 6968.0
1 TraesCS3A01G135100 chr3A 84.861 1724 240 17 1023 2736 112918001 112919713 0.000000e+00 1718.0
2 TraesCS3A01G135100 chr3A 98.305 295 5 0 1 295 15316448 15316154 5.590000e-143 518.0
3 TraesCS3A01G135100 chr3D 91.478 2910 151 39 777 3633 116022103 116024968 0.000000e+00 3910.0
4 TraesCS3A01G135100 chr3D 85.440 1717 228 19 1031 2736 116011127 116012832 0.000000e+00 1766.0
5 TraesCS3A01G135100 chr3D 91.250 320 25 3 300 618 116021587 116021904 2.080000e-117 433.0
6 TraesCS3A01G135100 chr3D 90.141 142 9 3 608 749 116021971 116022107 2.990000e-41 180.0
7 TraesCS3A01G135100 chr3B 90.021 2906 151 60 777 3629 169432127 169434946 0.000000e+00 3631.0
8 TraesCS3A01G135100 chr3B 86.364 792 95 12 1027 1813 169424772 169425555 0.000000e+00 852.0
9 TraesCS3A01G135100 chr3B 82.264 857 141 8 1887 2736 169425556 169426408 0.000000e+00 730.0
10 TraesCS3A01G135100 chr3B 90.798 326 24 5 295 618 169431611 169431932 7.490000e-117 431.0
11 TraesCS3A01G135100 chr3B 97.917 48 1 0 248 295 279666672 279666719 2.420000e-12 84.2
12 TraesCS3A01G135100 chr7A 98.644 295 4 0 1 295 133663045 133663339 1.200000e-144 523.0
13 TraesCS3A01G135100 chr7A 93.878 49 1 1 3657 3705 97901808 97901854 5.230000e-09 73.1
14 TraesCS3A01G135100 chr7D 96.700 303 9 1 1 302 19416051 19415749 1.560000e-138 503.0
15 TraesCS3A01G135100 chr2A 96.949 295 9 0 1 295 565061918 565061624 2.620000e-136 496.0
16 TraesCS3A01G135100 chr2A 94.845 291 15 0 1 291 171847614 171847904 4.440000e-124 455.0
17 TraesCS3A01G135100 chr6D 96.610 295 10 0 1 295 438924846 438924552 1.220000e-134 490.0
18 TraesCS3A01G135100 chr6D 77.230 426 70 15 412 832 96641333 96640930 1.360000e-54 224.0
19 TraesCS3A01G135100 chr6D 81.726 197 17 8 625 820 93436248 93436426 3.040000e-31 147.0
20 TraesCS3A01G135100 chr7B 95.932 295 8 2 1 295 532175805 532176095 3.410000e-130 475.0
21 TraesCS3A01G135100 chr2D 93.559 295 18 1 1 295 315123824 315124117 4.470000e-119 438.0
22 TraesCS3A01G135100 chr2D 92.593 54 2 1 3653 3706 14893064 14893115 4.040000e-10 76.8
23 TraesCS3A01G135100 chr2D 90.741 54 3 1 3653 3706 608527219 608527168 1.880000e-08 71.3
24 TraesCS3A01G135100 chr6B 93.985 266 14 2 1 266 76189341 76189078 5.870000e-108 401.0
25 TraesCS3A01G135100 chr6B 87.037 54 5 1 3653 3706 153545361 153545310 4.070000e-05 60.2
26 TraesCS3A01G135100 chr6A 79.891 184 21 5 639 822 115339231 115339064 1.840000e-23 121.0
27 TraesCS3A01G135100 chr1B 92.593 54 2 1 3653 3706 22060903 22060852 4.040000e-10 76.8
28 TraesCS3A01G135100 chr4B 90.741 54 5 0 3653 3706 223400131 223400078 5.230000e-09 73.1
29 TraesCS3A01G135100 chr1A 92.308 52 3 1 3708 3759 560882350 560882300 5.230000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G135100 chr3A 112935674 112939446 3772 False 6968.000000 6968 100.000000 1 3773 1 chr3A.!!$F2 3772
1 TraesCS3A01G135100 chr3A 112918001 112919713 1712 False 1718.000000 1718 84.861000 1023 2736 1 chr3A.!!$F1 1713
2 TraesCS3A01G135100 chr3D 116011127 116012832 1705 False 1766.000000 1766 85.440000 1031 2736 1 chr3D.!!$F1 1705
3 TraesCS3A01G135100 chr3D 116021587 116024968 3381 False 1507.666667 3910 90.956333 300 3633 3 chr3D.!!$F2 3333
4 TraesCS3A01G135100 chr3B 169431611 169434946 3335 False 2031.000000 3631 90.409500 295 3629 2 chr3B.!!$F3 3334
5 TraesCS3A01G135100 chr3B 169424772 169426408 1636 False 791.000000 852 84.314000 1027 2736 2 chr3B.!!$F2 1709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.031585 TGTGTGCTCTGTGTCCGTAC 59.968 55.0 0.00 0.0 0.0 3.67 F
158 159 0.032615 TTGAGTTTGGGCAAGGGTGT 60.033 50.0 0.00 0.0 0.0 4.16 F
159 160 0.032615 TGAGTTTGGGCAAGGGTGTT 60.033 50.0 0.00 0.0 0.0 3.32 F
913 996 0.035439 AATCGGTCGGATTGGCTGTT 60.035 50.0 4.93 0.0 43.7 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1782 0.955428 TCTTTGACTGCACATCGGCC 60.955 55.000 0.00 0.0 0.0 6.13 R
2154 2253 0.250124 AGTCCACATTTGCCGACGAA 60.250 50.000 0.00 0.0 0.0 3.85 R
2175 2277 3.241530 TCCAGCCCGCTGAACTGT 61.242 61.111 18.19 0.0 46.3 3.55 R
2829 2935 0.179100 CCACACGAGGCACAGGATAG 60.179 60.000 0.00 0.0 0.0 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.487934 CCAATCTTCTAGGCACCATCG 58.512 52.381 0.00 0.00 0.00 3.84
26 27 2.487934 CAATCTTCTAGGCACCATCGG 58.512 52.381 0.00 0.00 0.00 4.18
27 28 1.794714 ATCTTCTAGGCACCATCGGT 58.205 50.000 0.00 0.00 35.62 4.69
38 39 2.573869 CATCGGTGGAGAGTGCGT 59.426 61.111 0.00 0.00 0.00 5.24
39 40 1.079819 CATCGGTGGAGAGTGCGTT 60.080 57.895 0.00 0.00 0.00 4.84
40 41 1.079819 ATCGGTGGAGAGTGCGTTG 60.080 57.895 0.00 0.00 0.00 4.10
41 42 1.532604 ATCGGTGGAGAGTGCGTTGA 61.533 55.000 0.00 0.00 0.00 3.18
42 43 1.079819 CGGTGGAGAGTGCGTTGAT 60.080 57.895 0.00 0.00 0.00 2.57
43 44 1.078759 CGGTGGAGAGTGCGTTGATC 61.079 60.000 0.00 0.00 0.00 2.92
44 45 0.247736 GGTGGAGAGTGCGTTGATCT 59.752 55.000 0.00 0.00 0.00 2.75
45 46 1.476891 GGTGGAGAGTGCGTTGATCTA 59.523 52.381 0.00 0.00 0.00 1.98
46 47 2.480416 GGTGGAGAGTGCGTTGATCTAG 60.480 54.545 0.00 0.00 0.00 2.43
47 48 2.164624 GTGGAGAGTGCGTTGATCTAGT 59.835 50.000 0.00 0.00 0.00 2.57
48 49 2.826128 TGGAGAGTGCGTTGATCTAGTT 59.174 45.455 0.00 0.00 0.00 2.24
49 50 3.258372 TGGAGAGTGCGTTGATCTAGTTT 59.742 43.478 0.00 0.00 0.00 2.66
50 51 3.614616 GGAGAGTGCGTTGATCTAGTTTG 59.385 47.826 0.00 0.00 0.00 2.93
51 52 3.589988 AGAGTGCGTTGATCTAGTTTGG 58.410 45.455 0.00 0.00 0.00 3.28
52 53 3.006967 AGAGTGCGTTGATCTAGTTTGGT 59.993 43.478 0.00 0.00 0.00 3.67
53 54 3.740115 AGTGCGTTGATCTAGTTTGGTT 58.260 40.909 0.00 0.00 0.00 3.67
54 55 4.890088 AGTGCGTTGATCTAGTTTGGTTA 58.110 39.130 0.00 0.00 0.00 2.85
55 56 4.929808 AGTGCGTTGATCTAGTTTGGTTAG 59.070 41.667 0.00 0.00 0.00 2.34
56 57 4.092968 GTGCGTTGATCTAGTTTGGTTAGG 59.907 45.833 0.00 0.00 0.00 2.69
57 58 4.251268 GCGTTGATCTAGTTTGGTTAGGT 58.749 43.478 0.00 0.00 0.00 3.08
58 59 4.092968 GCGTTGATCTAGTTTGGTTAGGTG 59.907 45.833 0.00 0.00 0.00 4.00
59 60 5.475719 CGTTGATCTAGTTTGGTTAGGTGA 58.524 41.667 0.00 0.00 0.00 4.02
60 61 6.106673 CGTTGATCTAGTTTGGTTAGGTGAT 58.893 40.000 0.00 0.00 0.00 3.06
61 62 6.594159 CGTTGATCTAGTTTGGTTAGGTGATT 59.406 38.462 0.00 0.00 0.00 2.57
62 63 7.119262 CGTTGATCTAGTTTGGTTAGGTGATTT 59.881 37.037 0.00 0.00 0.00 2.17
63 64 7.921786 TGATCTAGTTTGGTTAGGTGATTTG 57.078 36.000 0.00 0.00 0.00 2.32
64 65 7.458397 TGATCTAGTTTGGTTAGGTGATTTGT 58.542 34.615 0.00 0.00 0.00 2.83
65 66 7.606456 TGATCTAGTTTGGTTAGGTGATTTGTC 59.394 37.037 0.00 0.00 0.00 3.18
66 67 5.929992 TCTAGTTTGGTTAGGTGATTTGTCG 59.070 40.000 0.00 0.00 0.00 4.35
67 68 4.457466 AGTTTGGTTAGGTGATTTGTCGT 58.543 39.130 0.00 0.00 0.00 4.34
68 69 4.274950 AGTTTGGTTAGGTGATTTGTCGTG 59.725 41.667 0.00 0.00 0.00 4.35
69 70 2.147958 TGGTTAGGTGATTTGTCGTGC 58.852 47.619 0.00 0.00 0.00 5.34
70 71 2.224426 TGGTTAGGTGATTTGTCGTGCT 60.224 45.455 0.00 0.00 0.00 4.40
71 72 3.007074 TGGTTAGGTGATTTGTCGTGCTA 59.993 43.478 0.00 0.00 0.00 3.49
72 73 4.189231 GGTTAGGTGATTTGTCGTGCTAT 58.811 43.478 0.00 0.00 0.00 2.97
73 74 4.034048 GGTTAGGTGATTTGTCGTGCTATG 59.966 45.833 0.00 0.00 0.00 2.23
74 75 3.610040 AGGTGATTTGTCGTGCTATGA 57.390 42.857 0.00 0.00 0.00 2.15
75 76 3.525537 AGGTGATTTGTCGTGCTATGAG 58.474 45.455 0.00 0.00 0.00 2.90
76 77 2.609459 GGTGATTTGTCGTGCTATGAGG 59.391 50.000 0.00 0.00 0.00 3.86
77 78 3.262420 GTGATTTGTCGTGCTATGAGGT 58.738 45.455 0.00 0.00 0.00 3.85
78 79 3.062639 GTGATTTGTCGTGCTATGAGGTG 59.937 47.826 0.00 0.00 0.00 4.00
79 80 2.831685 TTTGTCGTGCTATGAGGTGT 57.168 45.000 0.00 0.00 0.00 4.16
80 81 2.831685 TTGTCGTGCTATGAGGTGTT 57.168 45.000 0.00 0.00 0.00 3.32
81 82 2.831685 TGTCGTGCTATGAGGTGTTT 57.168 45.000 0.00 0.00 0.00 2.83
82 83 2.412870 TGTCGTGCTATGAGGTGTTTG 58.587 47.619 0.00 0.00 0.00 2.93
83 84 2.036604 TGTCGTGCTATGAGGTGTTTGA 59.963 45.455 0.00 0.00 0.00 2.69
84 85 3.262420 GTCGTGCTATGAGGTGTTTGAT 58.738 45.455 0.00 0.00 0.00 2.57
85 86 4.081917 TGTCGTGCTATGAGGTGTTTGATA 60.082 41.667 0.00 0.00 0.00 2.15
86 87 4.267928 GTCGTGCTATGAGGTGTTTGATAC 59.732 45.833 0.00 0.00 0.00 2.24
87 88 3.555956 CGTGCTATGAGGTGTTTGATACC 59.444 47.826 0.00 0.00 38.52 2.73
88 89 3.555956 GTGCTATGAGGTGTTTGATACCG 59.444 47.826 0.00 0.00 43.06 4.02
89 90 3.131396 GCTATGAGGTGTTTGATACCGG 58.869 50.000 0.00 0.00 43.06 5.28
90 91 2.710096 ATGAGGTGTTTGATACCGGG 57.290 50.000 6.32 0.00 43.06 5.73
91 92 0.616371 TGAGGTGTTTGATACCGGGG 59.384 55.000 6.32 0.00 43.06 5.73
92 93 0.107361 GAGGTGTTTGATACCGGGGG 60.107 60.000 6.32 0.00 43.06 5.40
93 94 0.548197 AGGTGTTTGATACCGGGGGA 60.548 55.000 6.32 0.00 43.06 4.81
94 95 0.393402 GGTGTTTGATACCGGGGGAC 60.393 60.000 6.32 0.00 0.00 4.46
95 96 0.741927 GTGTTTGATACCGGGGGACG 60.742 60.000 6.32 0.00 43.80 4.79
96 97 1.816679 GTTTGATACCGGGGGACGC 60.817 63.158 6.32 0.00 42.52 5.19
112 113 4.996434 GCGGCCTGTGTGCTCTGT 62.996 66.667 0.00 0.00 0.00 3.41
113 114 3.046087 CGGCCTGTGTGCTCTGTG 61.046 66.667 0.00 0.00 0.00 3.66
114 115 2.111878 GGCCTGTGTGCTCTGTGT 59.888 61.111 0.00 0.00 0.00 3.72
115 116 1.963338 GGCCTGTGTGCTCTGTGTC 60.963 63.158 0.00 0.00 0.00 3.67
116 117 1.963338 GCCTGTGTGCTCTGTGTCC 60.963 63.158 0.00 0.00 0.00 4.02
117 118 1.665916 CCTGTGTGCTCTGTGTCCG 60.666 63.158 0.00 0.00 0.00 4.79
118 119 1.068083 CTGTGTGCTCTGTGTCCGT 59.932 57.895 0.00 0.00 0.00 4.69
119 120 0.313987 CTGTGTGCTCTGTGTCCGTA 59.686 55.000 0.00 0.00 0.00 4.02
120 121 0.031585 TGTGTGCTCTGTGTCCGTAC 59.968 55.000 0.00 0.00 0.00 3.67
121 122 0.314302 GTGTGCTCTGTGTCCGTACT 59.686 55.000 0.00 0.00 0.00 2.73
122 123 1.037493 TGTGCTCTGTGTCCGTACTT 58.963 50.000 0.00 0.00 0.00 2.24
123 124 1.411246 TGTGCTCTGTGTCCGTACTTT 59.589 47.619 0.00 0.00 0.00 2.66
124 125 2.159014 TGTGCTCTGTGTCCGTACTTTT 60.159 45.455 0.00 0.00 0.00 2.27
125 126 2.475487 GTGCTCTGTGTCCGTACTTTTC 59.525 50.000 0.00 0.00 0.00 2.29
126 127 1.719780 GCTCTGTGTCCGTACTTTTCG 59.280 52.381 0.00 0.00 0.00 3.46
127 128 1.719780 CTCTGTGTCCGTACTTTTCGC 59.280 52.381 0.00 0.00 0.00 4.70
128 129 0.788391 CTGTGTCCGTACTTTTCGCC 59.212 55.000 0.00 0.00 0.00 5.54
129 130 0.104487 TGTGTCCGTACTTTTCGCCA 59.896 50.000 0.00 0.00 0.00 5.69
130 131 1.270412 TGTGTCCGTACTTTTCGCCAT 60.270 47.619 0.00 0.00 0.00 4.40
131 132 1.802365 GTGTCCGTACTTTTCGCCATT 59.198 47.619 0.00 0.00 0.00 3.16
132 133 1.801771 TGTCCGTACTTTTCGCCATTG 59.198 47.619 0.00 0.00 0.00 2.82
133 134 1.802365 GTCCGTACTTTTCGCCATTGT 59.198 47.619 0.00 0.00 0.00 2.71
134 135 2.224784 GTCCGTACTTTTCGCCATTGTT 59.775 45.455 0.00 0.00 0.00 2.83
135 136 2.879646 TCCGTACTTTTCGCCATTGTTT 59.120 40.909 0.00 0.00 0.00 2.83
136 137 2.977169 CCGTACTTTTCGCCATTGTTTG 59.023 45.455 0.00 0.00 0.00 2.93
148 149 3.132925 CCATTGTTTGGCTTGAGTTTGG 58.867 45.455 0.00 0.00 39.09 3.28
149 150 2.977772 TTGTTTGGCTTGAGTTTGGG 57.022 45.000 0.00 0.00 0.00 4.12
150 151 0.463620 TGTTTGGCTTGAGTTTGGGC 59.536 50.000 0.00 0.00 0.00 5.36
151 152 0.463620 GTTTGGCTTGAGTTTGGGCA 59.536 50.000 0.00 0.00 0.00 5.36
152 153 1.134551 GTTTGGCTTGAGTTTGGGCAA 60.135 47.619 0.00 0.00 42.24 4.52
153 154 0.752054 TTGGCTTGAGTTTGGGCAAG 59.248 50.000 0.00 0.00 43.26 4.01
154 155 1.114722 TGGCTTGAGTTTGGGCAAGG 61.115 55.000 0.00 0.00 41.29 3.61
155 156 1.667722 GCTTGAGTTTGGGCAAGGG 59.332 57.895 0.00 0.00 41.29 3.95
156 157 1.115326 GCTTGAGTTTGGGCAAGGGT 61.115 55.000 0.00 0.00 41.29 4.34
157 158 0.675633 CTTGAGTTTGGGCAAGGGTG 59.324 55.000 0.00 0.00 38.22 4.61
158 159 0.032615 TTGAGTTTGGGCAAGGGTGT 60.033 50.000 0.00 0.00 0.00 4.16
159 160 0.032615 TGAGTTTGGGCAAGGGTGTT 60.033 50.000 0.00 0.00 0.00 3.32
160 161 1.215673 TGAGTTTGGGCAAGGGTGTTA 59.784 47.619 0.00 0.00 0.00 2.41
161 162 1.886542 GAGTTTGGGCAAGGGTGTTAG 59.113 52.381 0.00 0.00 0.00 2.34
162 163 1.216930 AGTTTGGGCAAGGGTGTTAGT 59.783 47.619 0.00 0.00 0.00 2.24
163 164 2.036387 GTTTGGGCAAGGGTGTTAGTT 58.964 47.619 0.00 0.00 0.00 2.24
164 165 1.698506 TTGGGCAAGGGTGTTAGTTG 58.301 50.000 0.00 0.00 0.00 3.16
165 166 0.825840 TGGGCAAGGGTGTTAGTTGC 60.826 55.000 0.00 0.00 44.79 4.17
167 168 1.579429 GCAAGGGTGTTAGTTGCCG 59.421 57.895 0.00 0.00 40.61 5.69
168 169 0.887387 GCAAGGGTGTTAGTTGCCGA 60.887 55.000 0.00 0.00 40.61 5.54
169 170 1.821216 CAAGGGTGTTAGTTGCCGAT 58.179 50.000 0.00 0.00 0.00 4.18
170 171 1.468520 CAAGGGTGTTAGTTGCCGATG 59.531 52.381 0.00 0.00 0.00 3.84
171 172 0.690762 AGGGTGTTAGTTGCCGATGT 59.309 50.000 0.00 0.00 0.00 3.06
172 173 1.073284 AGGGTGTTAGTTGCCGATGTT 59.927 47.619 0.00 0.00 0.00 2.71
173 174 1.199097 GGGTGTTAGTTGCCGATGTTG 59.801 52.381 0.00 0.00 0.00 3.33
174 175 1.877443 GGTGTTAGTTGCCGATGTTGT 59.123 47.619 0.00 0.00 0.00 3.32
175 176 2.095919 GGTGTTAGTTGCCGATGTTGTC 60.096 50.000 0.00 0.00 0.00 3.18
176 177 2.546368 GTGTTAGTTGCCGATGTTGTCA 59.454 45.455 0.00 0.00 0.00 3.58
177 178 3.188460 GTGTTAGTTGCCGATGTTGTCAT 59.812 43.478 0.00 0.00 36.95 3.06
178 179 3.188254 TGTTAGTTGCCGATGTTGTCATG 59.812 43.478 0.00 0.00 34.06 3.07
179 180 1.167851 AGTTGCCGATGTTGTCATGG 58.832 50.000 0.00 0.00 34.06 3.66
180 181 0.881118 GTTGCCGATGTTGTCATGGT 59.119 50.000 0.00 0.00 34.06 3.55
181 182 0.880441 TTGCCGATGTTGTCATGGTG 59.120 50.000 0.00 0.00 34.06 4.17
182 183 0.959867 TGCCGATGTTGTCATGGTGG 60.960 55.000 0.00 0.00 34.06 4.61
183 184 0.960364 GCCGATGTTGTCATGGTGGT 60.960 55.000 0.00 0.00 34.06 4.16
184 185 1.533625 CCGATGTTGTCATGGTGGTT 58.466 50.000 0.00 0.00 34.06 3.67
185 186 1.199789 CCGATGTTGTCATGGTGGTTG 59.800 52.381 0.00 0.00 34.06 3.77
186 187 1.879380 CGATGTTGTCATGGTGGTTGT 59.121 47.619 0.00 0.00 34.06 3.32
187 188 2.350676 CGATGTTGTCATGGTGGTTGTG 60.351 50.000 0.00 0.00 34.06 3.33
188 189 1.397672 TGTTGTCATGGTGGTTGTGG 58.602 50.000 0.00 0.00 0.00 4.17
189 190 0.673437 GTTGTCATGGTGGTTGTGGG 59.327 55.000 0.00 0.00 0.00 4.61
190 191 0.260230 TTGTCATGGTGGTTGTGGGT 59.740 50.000 0.00 0.00 0.00 4.51
191 192 0.467106 TGTCATGGTGGTTGTGGGTG 60.467 55.000 0.00 0.00 0.00 4.61
192 193 0.467290 GTCATGGTGGTTGTGGGTGT 60.467 55.000 0.00 0.00 0.00 4.16
193 194 0.260230 TCATGGTGGTTGTGGGTGTT 59.740 50.000 0.00 0.00 0.00 3.32
194 195 1.495148 TCATGGTGGTTGTGGGTGTTA 59.505 47.619 0.00 0.00 0.00 2.41
195 196 2.091830 TCATGGTGGTTGTGGGTGTTAA 60.092 45.455 0.00 0.00 0.00 2.01
196 197 1.765230 TGGTGGTTGTGGGTGTTAAC 58.235 50.000 0.00 0.00 0.00 2.01
197 198 1.034356 GGTGGTTGTGGGTGTTAACC 58.966 55.000 2.48 0.00 46.81 2.85
198 199 1.410507 GGTGGTTGTGGGTGTTAACCT 60.411 52.381 2.48 0.00 46.70 3.50
199 200 1.951602 GTGGTTGTGGGTGTTAACCTC 59.048 52.381 2.48 0.00 46.70 3.85
200 201 1.847737 TGGTTGTGGGTGTTAACCTCT 59.152 47.619 2.48 0.00 46.70 3.69
201 202 2.158726 TGGTTGTGGGTGTTAACCTCTC 60.159 50.000 2.48 0.00 46.70 3.20
202 203 2.140717 GTTGTGGGTGTTAACCTCTCG 58.859 52.381 2.48 0.00 46.70 4.04
203 204 0.682852 TGTGGGTGTTAACCTCTCGG 59.317 55.000 2.48 0.00 46.70 4.63
204 205 0.036671 GTGGGTGTTAACCTCTCGGG 60.037 60.000 2.48 0.00 46.70 5.14
205 206 1.196104 TGGGTGTTAACCTCTCGGGG 61.196 60.000 2.48 0.00 46.70 5.73
206 207 1.196766 GGGTGTTAACCTCTCGGGGT 61.197 60.000 2.48 0.00 46.70 4.95
207 208 0.036671 GGTGTTAACCTCTCGGGGTG 60.037 60.000 2.48 0.00 43.84 4.61
208 209 0.036671 GTGTTAACCTCTCGGGGTGG 60.037 60.000 2.48 0.00 39.85 4.61
209 210 1.078637 GTTAACCTCTCGGGGTGGC 60.079 63.158 0.00 0.00 39.85 5.01
210 211 1.536907 TTAACCTCTCGGGGTGGCA 60.537 57.895 0.00 0.00 39.85 4.92
211 212 1.833787 TTAACCTCTCGGGGTGGCAC 61.834 60.000 9.70 9.70 39.85 5.01
212 213 4.954118 ACCTCTCGGGGTGGCACA 62.954 66.667 20.82 0.00 38.30 4.57
213 214 3.402681 CCTCTCGGGGTGGCACAT 61.403 66.667 20.82 0.00 44.52 3.21
214 215 2.671070 CTCTCGGGGTGGCACATT 59.329 61.111 20.82 0.00 44.52 2.71
215 216 1.746615 CTCTCGGGGTGGCACATTG 60.747 63.158 20.82 7.91 44.52 2.82
216 217 3.443045 CTCGGGGTGGCACATTGC 61.443 66.667 20.82 1.05 44.52 3.56
235 236 3.877801 CGAAAGGCGTTGTATCAGC 57.122 52.632 0.00 0.00 34.64 4.26
239 240 3.395669 GGCGTTGTATCAGCCGTC 58.604 61.111 0.00 0.00 41.53 4.79
240 241 1.153628 GGCGTTGTATCAGCCGTCT 60.154 57.895 0.00 0.00 41.53 4.18
241 242 0.739813 GGCGTTGTATCAGCCGTCTT 60.740 55.000 0.00 0.00 41.53 3.01
242 243 0.370273 GCGTTGTATCAGCCGTCTTG 59.630 55.000 0.00 0.00 0.00 3.02
243 244 0.999406 CGTTGTATCAGCCGTCTTGG 59.001 55.000 0.00 0.00 42.50 3.61
255 256 3.810310 CCGTCTTGGCTCTTCTTCTAT 57.190 47.619 0.00 0.00 0.00 1.98
256 257 3.452474 CCGTCTTGGCTCTTCTTCTATG 58.548 50.000 0.00 0.00 0.00 2.23
257 258 3.131223 CCGTCTTGGCTCTTCTTCTATGA 59.869 47.826 0.00 0.00 0.00 2.15
258 259 4.382040 CCGTCTTGGCTCTTCTTCTATGAA 60.382 45.833 0.00 0.00 0.00 2.57
259 260 5.355596 CGTCTTGGCTCTTCTTCTATGAAT 58.644 41.667 0.00 0.00 0.00 2.57
260 261 6.461648 CCGTCTTGGCTCTTCTTCTATGAATA 60.462 42.308 0.00 0.00 0.00 1.75
261 262 7.151308 CGTCTTGGCTCTTCTTCTATGAATAT 58.849 38.462 0.00 0.00 0.00 1.28
262 263 8.300286 CGTCTTGGCTCTTCTTCTATGAATATA 58.700 37.037 0.00 0.00 0.00 0.86
274 275 9.468532 TCTTCTATGAATATATGATACGCATGC 57.531 33.333 7.91 7.91 37.87 4.06
275 276 9.473640 CTTCTATGAATATATGATACGCATGCT 57.526 33.333 17.13 5.50 37.87 3.79
276 277 9.822185 TTCTATGAATATATGATACGCATGCTT 57.178 29.630 17.13 9.37 37.87 3.91
277 278 9.252962 TCTATGAATATATGATACGCATGCTTG 57.747 33.333 17.13 3.27 37.87 4.01
278 279 7.854557 ATGAATATATGATACGCATGCTTGT 57.145 32.000 17.13 9.84 37.87 3.16
279 280 7.064060 TGAATATATGATACGCATGCTTGTG 57.936 36.000 17.13 11.29 37.87 3.33
280 281 3.818961 ATATGATACGCATGCTTGTGC 57.181 42.857 17.13 6.19 41.65 4.57
287 288 2.845600 GCATGCTTGTGCGTATTCG 58.154 52.632 11.37 0.00 43.34 3.34
288 289 0.373370 GCATGCTTGTGCGTATTCGA 59.627 50.000 11.37 0.00 43.34 3.71
289 290 1.593070 GCATGCTTGTGCGTATTCGAG 60.593 52.381 11.37 0.00 43.34 4.04
290 291 1.926510 CATGCTTGTGCGTATTCGAGA 59.073 47.619 0.00 0.00 43.34 4.04
291 292 2.073117 TGCTTGTGCGTATTCGAGAA 57.927 45.000 0.00 0.00 43.34 2.87
292 293 2.409012 TGCTTGTGCGTATTCGAGAAA 58.591 42.857 0.00 0.00 43.34 2.52
293 294 2.803386 TGCTTGTGCGTATTCGAGAAAA 59.197 40.909 0.00 0.00 43.34 2.29
301 302 7.577979 TGTGCGTATTCGAGAAAAACTATTTT 58.422 30.769 0.00 0.00 39.22 1.82
305 306 8.670668 GCGTATTCGAGAAAAACTATTTTATGC 58.329 33.333 0.00 0.00 37.80 3.14
323 324 7.566760 TTTATGCCACATGTAGATTGGTAAG 57.433 36.000 0.00 0.00 32.50 2.34
352 353 8.627403 CCTTTTAAGAATGTATGATGCTGATGT 58.373 33.333 0.00 0.00 0.00 3.06
372 373 6.968335 TGATGTTGTGATTTTCATAAGATGCG 59.032 34.615 2.20 0.00 33.03 4.73
425 426 5.918608 AGGTTAACTCACTGGCAGTATATG 58.081 41.667 21.59 8.24 0.00 1.78
430 431 9.326413 GTTAACTCACTGGCAGTATATGTATTT 57.674 33.333 21.59 7.57 0.00 1.40
433 434 6.126768 ACTCACTGGCAGTATATGTATTTGGT 60.127 38.462 21.59 0.71 0.00 3.67
454 455 4.456911 GGTTTTGAGTGAAGATCTGATGCA 59.543 41.667 0.00 0.00 0.00 3.96
487 488 1.280746 CAGGCTGAACGTTGCACTG 59.719 57.895 9.42 9.71 0.00 3.66
559 560 5.523552 TGTCAAGATTGTATGTATGAAGCCG 59.476 40.000 0.00 0.00 0.00 5.52
577 578 1.226435 GTGTTTGCACGGCGTTGAA 60.226 52.632 11.19 2.51 35.75 2.69
582 583 1.092921 TTGCACGGCGTTGAACTTCT 61.093 50.000 11.19 0.00 0.00 2.85
596 597 3.244561 TGAACTTCTCGGGCATCTTTTCT 60.245 43.478 0.00 0.00 0.00 2.52
600 601 4.407296 ACTTCTCGGGCATCTTTTCTCTAT 59.593 41.667 0.00 0.00 0.00 1.98
601 602 4.327982 TCTCGGGCATCTTTTCTCTATG 57.672 45.455 0.00 0.00 0.00 2.23
603 604 1.876156 CGGGCATCTTTTCTCTATGGC 59.124 52.381 0.00 0.00 43.38 4.40
606 607 1.876156 GCATCTTTTCTCTATGGCCCG 59.124 52.381 0.00 0.00 0.00 6.13
636 714 4.497300 CTTTCACCAATTACCAATGCCAG 58.503 43.478 0.00 0.00 0.00 4.85
637 715 3.168035 TCACCAATTACCAATGCCAGT 57.832 42.857 0.00 0.00 0.00 4.00
665 743 8.408043 AGACAATTTCAAGTATGATCCAACAA 57.592 30.769 0.00 0.00 34.96 2.83
697 775 0.409484 AATGCCAGCCTAGTTGGGTT 59.591 50.000 11.33 0.00 45.67 4.11
726 804 5.648092 AGAACACTGTTGCTAGTCTGTTTTT 59.352 36.000 0.00 0.00 0.00 1.94
753 831 9.480053 TTCTTTTCTTGATGAAGCTTATTTTGG 57.520 29.630 0.00 0.00 35.89 3.28
754 832 8.859090 TCTTTTCTTGATGAAGCTTATTTTGGA 58.141 29.630 0.00 0.00 35.89 3.53
755 833 9.480053 CTTTTCTTGATGAAGCTTATTTTGGAA 57.520 29.630 0.00 0.00 35.89 3.53
837 919 2.886523 TGCAATGTCAATATGGCCTAGC 59.113 45.455 3.32 0.00 0.00 3.42
839 921 3.141398 CAATGTCAATATGGCCTAGCGT 58.859 45.455 3.32 0.00 0.00 5.07
856 938 1.377725 GTCTGACATGTGGGCCTGG 60.378 63.158 1.15 0.00 0.00 4.45
899 982 2.044053 ACATGTGGGCCCAATCGG 60.044 61.111 30.64 18.98 0.00 4.18
900 983 2.044053 CATGTGGGCCCAATCGGT 60.044 61.111 30.64 8.03 0.00 4.69
901 984 2.120909 CATGTGGGCCCAATCGGTC 61.121 63.158 30.64 14.22 34.35 4.79
905 988 3.873812 GGGCCCAATCGGTCGGAT 61.874 66.667 19.95 0.00 36.95 4.18
906 989 2.192175 GGCCCAATCGGTCGGATT 59.808 61.111 0.00 0.00 46.29 3.01
911 994 4.540153 AATCGGTCGGATTGGCTG 57.460 55.556 4.93 0.00 43.70 4.85
912 995 1.602237 AATCGGTCGGATTGGCTGT 59.398 52.632 4.93 0.00 43.70 4.40
913 996 0.035439 AATCGGTCGGATTGGCTGTT 60.035 50.000 4.93 0.00 43.70 3.16
914 997 0.828022 ATCGGTCGGATTGGCTGTTA 59.172 50.000 0.00 0.00 28.32 2.41
915 998 0.609151 TCGGTCGGATTGGCTGTTAA 59.391 50.000 0.00 0.00 0.00 2.01
925 1008 2.891191 TGGCTGTTAAAAGGGGTAGG 57.109 50.000 0.00 0.00 0.00 3.18
937 1020 4.586306 AAGGGGTAGGTTGGTAGATTTG 57.414 45.455 0.00 0.00 0.00 2.32
943 1026 3.542969 AGGTTGGTAGATTTGGGCTTT 57.457 42.857 0.00 0.00 0.00 3.51
945 1028 4.600062 AGGTTGGTAGATTTGGGCTTTAG 58.400 43.478 0.00 0.00 0.00 1.85
946 1029 4.044191 AGGTTGGTAGATTTGGGCTTTAGT 59.956 41.667 0.00 0.00 0.00 2.24
948 1031 3.352648 TGGTAGATTTGGGCTTTAGTGC 58.647 45.455 0.00 0.00 0.00 4.40
949 1032 3.010138 TGGTAGATTTGGGCTTTAGTGCT 59.990 43.478 0.00 0.00 0.00 4.40
965 1054 7.865889 GCTTTAGTGCTAATTGTTTAAACCAGT 59.134 33.333 15.59 6.74 0.00 4.00
972 1061 7.147811 TGCTAATTGTTTAAACCAGTTCCACTT 60.148 33.333 15.59 0.00 0.00 3.16
983 1072 0.472471 GTTCCACTTCCACTCCACCA 59.528 55.000 0.00 0.00 0.00 4.17
984 1073 0.472471 TTCCACTTCCACTCCACCAC 59.528 55.000 0.00 0.00 0.00 4.16
985 1074 0.399949 TCCACTTCCACTCCACCACT 60.400 55.000 0.00 0.00 0.00 4.00
986 1075 0.035458 CCACTTCCACTCCACCACTC 59.965 60.000 0.00 0.00 0.00 3.51
989 1078 0.838122 CTTCCACTCCACCACTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
997 1090 0.692419 CCACCACTCCCTAGCTCCAT 60.692 60.000 0.00 0.00 0.00 3.41
1108 1204 2.219325 CTTTCCGTCGCTCCAGCTCT 62.219 60.000 0.00 0.00 39.32 4.09
1110 1206 4.544689 CCGTCGCTCCAGCTCTCG 62.545 72.222 0.00 0.00 39.32 4.04
1368 1464 1.970917 GCCAGTTCGACCGCATCTTG 61.971 60.000 0.00 0.00 0.00 3.02
1495 1591 4.426313 TCTCCGAGCCTGGCGAGA 62.426 66.667 17.40 17.40 0.00 4.04
1570 1666 1.065126 CCAACCTCACCCTCCATCTTC 60.065 57.143 0.00 0.00 0.00 2.87
1587 1683 2.771943 TCTTCACTTCCACTCCACAACT 59.228 45.455 0.00 0.00 0.00 3.16
1683 1782 0.657840 GGTTCGCCATCCAGAATTCG 59.342 55.000 0.00 0.00 37.19 3.34
1828 1927 0.392336 GGCCAACAATTTGTCCAGCA 59.608 50.000 15.79 0.00 30.53 4.41
1865 1964 3.063045 GCGTTTCGGGAGGTTATTGTTAG 59.937 47.826 0.00 0.00 0.00 2.34
1872 1971 4.680702 GGGAGGTTATTGTTAGAGTCGAC 58.319 47.826 7.70 7.70 0.00 4.20
1875 1974 5.392380 GGAGGTTATTGTTAGAGTCGACGAA 60.392 44.000 10.46 3.15 0.00 3.85
1878 1977 5.060200 GGTTATTGTTAGAGTCGACGAACAC 59.940 44.000 24.13 15.22 35.76 3.32
1920 2019 1.919240 TCACTGTCATCTACACCGGT 58.081 50.000 0.00 0.00 33.45 5.28
1954 2053 3.626996 CTCTGGCGGCCAATCACCA 62.627 63.158 23.94 0.45 30.80 4.17
2089 2188 4.924305 ATGTGGTACATTGATGCCAATC 57.076 40.909 0.00 0.00 44.52 2.67
2091 2190 3.695556 TGTGGTACATTGATGCCAATCTG 59.304 43.478 0.00 0.00 44.52 2.90
2175 2277 0.948623 CGTCGGCAAATGTGGACTCA 60.949 55.000 0.00 0.00 0.00 3.41
2321 2423 5.808042 AACAGCAATGTGTATAGCAAGAG 57.192 39.130 0.00 0.00 0.00 2.85
2361 2463 0.672401 ACCAAACGATCGACGCCAAT 60.672 50.000 24.34 0.00 46.94 3.16
2451 2556 3.954904 TCTATCTTTTCTCTGGGACCTCG 59.045 47.826 0.00 0.00 0.00 4.63
2516 2621 1.316651 GGCATCAATGAGAAGAGGGC 58.683 55.000 0.00 0.00 34.12 5.19
2541 2646 1.847506 TGGGGAGCAAGGCTTCTCA 60.848 57.895 20.59 0.00 43.22 3.27
2555 2660 2.159128 GCTTCTCATACAGCTCTCTGCA 60.159 50.000 0.00 0.00 44.10 4.41
2561 2666 3.703052 TCATACAGCTCTCTGCAGAATGA 59.297 43.478 18.85 17.82 44.10 2.57
2628 2733 2.346365 GGGTCCGGTGAGAACCAC 59.654 66.667 11.11 0.00 43.70 4.16
2678 2783 4.467438 TGGATGCTACTTCAGAGATGTCAA 59.533 41.667 0.00 0.00 0.00 3.18
2737 2842 3.197766 TGACTCGTGCTTAAAGGGATCAT 59.802 43.478 0.00 0.00 0.00 2.45
2738 2843 3.798202 ACTCGTGCTTAAAGGGATCATC 58.202 45.455 0.00 0.00 0.00 2.92
2739 2844 3.197766 ACTCGTGCTTAAAGGGATCATCA 59.802 43.478 0.00 0.00 0.00 3.07
2740 2845 3.531538 TCGTGCTTAAAGGGATCATCAC 58.468 45.455 0.00 0.00 0.00 3.06
2741 2846 2.285220 CGTGCTTAAAGGGATCATCACG 59.715 50.000 0.00 0.00 39.68 4.35
2748 2853 6.483640 GCTTAAAGGGATCATCACGAGTTAAT 59.516 38.462 0.00 0.00 0.00 1.40
2760 2865 3.310774 CACGAGTTAATGGCTCCAGATTG 59.689 47.826 0.00 0.00 0.00 2.67
2784 2889 4.645588 CCCTCCAGTTAGTTTAGACGATCT 59.354 45.833 0.00 0.00 0.00 2.75
2828 2934 8.502387 GCAAGTTAGAGAATAAGATTGCATAGG 58.498 37.037 0.00 0.00 41.00 2.57
2829 2935 8.502387 CAAGTTAGAGAATAAGATTGCATAGGC 58.498 37.037 0.00 0.00 41.68 3.93
2910 3022 6.145534 TGTTTTCGAATGTATCAGTGACACTC 59.854 38.462 4.74 0.00 0.00 3.51
2922 3034 6.861065 TCAGTGACACTCTTAATTTGGTTC 57.139 37.500 4.74 0.00 0.00 3.62
2938 3050 3.942829 TGGTTCGAAATGATTCTGCTCT 58.057 40.909 0.00 0.00 33.17 4.09
2948 3060 2.157738 GATTCTGCTCTGCACAGGTTT 58.842 47.619 3.24 0.00 35.78 3.27
2949 3061 1.311859 TTCTGCTCTGCACAGGTTTG 58.688 50.000 3.24 0.00 35.78 2.93
2950 3062 0.469494 TCTGCTCTGCACAGGTTTGA 59.531 50.000 3.24 0.00 35.78 2.69
2952 3064 1.677576 CTGCTCTGCACAGGTTTGAAA 59.322 47.619 0.00 0.00 33.79 2.69
2954 3066 2.034939 TGCTCTGCACAGGTTTGAAATG 59.965 45.455 0.00 0.00 31.71 2.32
2955 3067 2.294233 GCTCTGCACAGGTTTGAAATGA 59.706 45.455 0.00 0.00 0.00 2.57
2956 3068 3.243501 GCTCTGCACAGGTTTGAAATGAA 60.244 43.478 0.00 0.00 0.00 2.57
2957 3069 4.293415 CTCTGCACAGGTTTGAAATGAAC 58.707 43.478 0.00 0.00 0.00 3.18
2959 3071 4.044336 TGCACAGGTTTGAAATGAACTG 57.956 40.909 0.00 0.00 0.00 3.16
2960 3072 3.446873 TGCACAGGTTTGAAATGAACTGT 59.553 39.130 0.00 0.00 0.00 3.55
2963 3075 5.221048 GCACAGGTTTGAAATGAACTGTACT 60.221 40.000 0.00 0.00 0.00 2.73
2964 3076 6.017440 GCACAGGTTTGAAATGAACTGTACTA 60.017 38.462 0.00 0.00 0.00 1.82
2965 3077 7.352739 CACAGGTTTGAAATGAACTGTACTAC 58.647 38.462 0.00 0.00 0.00 2.73
2966 3078 7.011950 CACAGGTTTGAAATGAACTGTACTACA 59.988 37.037 0.00 0.00 0.00 2.74
2967 3079 7.554835 ACAGGTTTGAAATGAACTGTACTACAA 59.445 33.333 0.00 0.00 0.00 2.41
2968 3080 8.070171 CAGGTTTGAAATGAACTGTACTACAAG 58.930 37.037 0.00 0.00 0.00 3.16
3006 3120 4.756642 TCAAGCTTCTGACATTGTTACTGG 59.243 41.667 0.00 0.00 0.00 4.00
3007 3121 4.357918 AGCTTCTGACATTGTTACTGGT 57.642 40.909 0.00 0.00 0.00 4.00
3008 3122 4.718961 AGCTTCTGACATTGTTACTGGTT 58.281 39.130 0.00 0.00 0.00 3.67
3009 3123 5.865085 AGCTTCTGACATTGTTACTGGTTA 58.135 37.500 0.00 0.00 0.00 2.85
3010 3124 5.701290 AGCTTCTGACATTGTTACTGGTTAC 59.299 40.000 0.00 0.00 0.00 2.50
3050 3164 1.667724 GTTCACAAGCATCTGATCGGG 59.332 52.381 0.62 0.00 0.00 5.14
3093 3207 3.999663 GTCTGTTCCAATCTCCAACTCAG 59.000 47.826 0.00 0.00 0.00 3.35
3102 3216 1.203287 TCTCCAACTCAGTCGCTCATG 59.797 52.381 0.00 0.00 0.00 3.07
3112 3226 1.086634 GTCGCTCATGGCTGGAGAAC 61.087 60.000 9.65 4.01 39.13 3.01
3118 3232 0.179089 CATGGCTGGAGAACGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
3120 3234 2.650116 GGCTGGAGAACGGAGAGCA 61.650 63.158 0.00 0.00 0.00 4.26
3126 3240 4.446371 CTGGAGAACGGAGAGCAATTTAT 58.554 43.478 0.00 0.00 0.00 1.40
3127 3241 5.601662 CTGGAGAACGGAGAGCAATTTATA 58.398 41.667 0.00 0.00 0.00 0.98
3133 3247 3.181479 ACGGAGAGCAATTTATAGTCGCA 60.181 43.478 0.00 0.00 0.00 5.10
3134 3248 3.426859 CGGAGAGCAATTTATAGTCGCAG 59.573 47.826 0.00 0.00 0.00 5.18
3135 3249 4.621991 GGAGAGCAATTTATAGTCGCAGA 58.378 43.478 0.00 0.00 0.00 4.26
3136 3250 5.050490 GGAGAGCAATTTATAGTCGCAGAA 58.950 41.667 0.00 0.00 39.69 3.02
3165 3279 1.153147 CCCTAGCCCCTCGAAAAGC 60.153 63.158 0.00 0.00 0.00 3.51
3181 3295 2.430546 AAGCTCTCTTGAGTGACACG 57.569 50.000 0.00 0.00 42.13 4.49
3208 3322 1.597742 ACAAAGCGTGCTCACAAGAT 58.402 45.000 0.00 0.00 0.00 2.40
3209 3323 1.265095 ACAAAGCGTGCTCACAAGATG 59.735 47.619 0.00 0.00 0.00 2.90
3210 3324 0.877071 AAAGCGTGCTCACAAGATGG 59.123 50.000 0.00 0.00 0.00 3.51
3211 3325 0.035317 AAGCGTGCTCACAAGATGGA 59.965 50.000 0.00 0.00 0.00 3.41
3239 3353 0.666913 GCAATATGCAGTGCTGGAGG 59.333 55.000 17.60 4.55 44.26 4.30
3305 3420 1.673993 TGGTGCAACGCTATGGGTG 60.674 57.895 0.00 0.00 38.12 4.61
3306 3421 2.406616 GGTGCAACGCTATGGGTGG 61.407 63.158 0.00 0.00 38.12 4.61
3307 3422 1.376683 GTGCAACGCTATGGGTGGA 60.377 57.895 0.00 0.00 0.00 4.02
3308 3423 1.078497 TGCAACGCTATGGGTGGAG 60.078 57.895 0.00 0.00 0.00 3.86
3309 3424 1.220749 GCAACGCTATGGGTGGAGA 59.779 57.895 0.00 0.00 0.00 3.71
3310 3425 0.179045 GCAACGCTATGGGTGGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
3320 3435 2.143419 GGTGGAGATGGAGGCGGAT 61.143 63.158 0.00 0.00 0.00 4.18
3329 3444 0.546122 TGGAGGCGGATGCAACTAAT 59.454 50.000 0.00 0.00 45.35 1.73
3358 3473 3.252458 ACATTGGAAAACGAAGTGCTACC 59.748 43.478 0.00 0.00 45.00 3.18
3372 3487 0.940126 GCTACCGCTCCATTGATGTG 59.060 55.000 0.00 0.00 0.00 3.21
3391 3506 4.500265 TGGTTTTCCAGCCAGCTC 57.500 55.556 0.00 0.00 46.22 4.09
3422 3537 4.580580 TCTGAGCCTTTCAAGTTCCTTTTC 59.419 41.667 0.00 0.00 34.81 2.29
3463 3578 2.720758 CCGCACGTTCTTCGCTGAG 61.721 63.158 0.00 0.00 44.19 3.35
3465 3580 3.016474 GCACGTTCTTCGCTGAGCC 62.016 63.158 0.00 0.00 44.19 4.70
3475 3614 2.647297 GCTGAGCCCACTTGTTGC 59.353 61.111 0.00 0.00 0.00 4.17
3519 3661 1.876156 GGAGACTTGGCTTTGTCAGTG 59.124 52.381 7.55 0.00 35.81 3.66
3538 3680 1.508088 GAAATTCCAGGCAGCACCG 59.492 57.895 0.00 0.00 46.52 4.94
3542 3684 2.129555 ATTCCAGGCAGCACCGACTT 62.130 55.000 0.00 0.00 46.52 3.01
3562 3704 1.668419 ATGCAGCGAAGGATGGTTAC 58.332 50.000 0.00 0.00 0.00 2.50
3563 3705 0.392461 TGCAGCGAAGGATGGTTACC 60.392 55.000 0.00 0.00 0.00 2.85
3568 3711 2.572104 AGCGAAGGATGGTTACCTTTCT 59.428 45.455 2.07 0.00 46.14 2.52
3572 3715 3.611766 AGGATGGTTACCTTTCTCACG 57.388 47.619 2.07 0.00 33.55 4.35
3599 3747 1.882352 CGTAGCCCCCTTGGATTATGC 60.882 57.143 0.00 0.00 35.39 3.14
3629 3777 5.017294 ACTCTTGACTGCTAGGATTAAGC 57.983 43.478 0.00 0.00 40.50 3.09
3633 3781 3.535561 TGACTGCTAGGATTAAGCTTGC 58.464 45.455 9.86 2.12 40.73 4.01
3634 3782 3.055167 TGACTGCTAGGATTAAGCTTGCA 60.055 43.478 9.86 7.22 40.73 4.08
3635 3783 3.941483 GACTGCTAGGATTAAGCTTGCAA 59.059 43.478 9.86 0.00 40.73 4.08
3636 3784 3.944015 ACTGCTAGGATTAAGCTTGCAAG 59.056 43.478 22.44 22.44 40.73 4.01
3652 3800 2.621338 GCAAGCTGCACTGTATACAGA 58.379 47.619 34.16 14.90 44.03 3.41
3653 3801 2.349886 GCAAGCTGCACTGTATACAGAC 59.650 50.000 34.16 25.23 44.03 3.51
3654 3802 2.932614 CAAGCTGCACTGTATACAGACC 59.067 50.000 34.16 23.86 46.59 3.85
3655 3803 2.461695 AGCTGCACTGTATACAGACCT 58.538 47.619 34.16 19.60 46.59 3.85
3656 3804 2.834549 AGCTGCACTGTATACAGACCTT 59.165 45.455 34.16 13.19 46.59 3.50
3657 3805 3.118956 AGCTGCACTGTATACAGACCTTC 60.119 47.826 34.16 20.26 46.59 3.46
3658 3806 3.118956 GCTGCACTGTATACAGACCTTCT 60.119 47.826 34.16 12.13 46.59 2.85
3659 3807 4.621747 GCTGCACTGTATACAGACCTTCTT 60.622 45.833 34.16 11.44 46.59 2.52
3660 3808 5.394224 GCTGCACTGTATACAGACCTTCTTA 60.394 44.000 34.16 13.08 46.59 2.10
3661 3809 5.962433 TGCACTGTATACAGACCTTCTTAC 58.038 41.667 34.16 14.64 46.59 2.34
3662 3810 5.715279 TGCACTGTATACAGACCTTCTTACT 59.285 40.000 34.16 9.35 46.59 2.24
3663 3811 6.210784 TGCACTGTATACAGACCTTCTTACTT 59.789 38.462 34.16 8.86 46.59 2.24
3664 3812 6.752815 GCACTGTATACAGACCTTCTTACTTC 59.247 42.308 34.16 3.66 46.59 3.01
3665 3813 7.259161 CACTGTATACAGACCTTCTTACTTCC 58.741 42.308 34.16 0.00 46.59 3.46
3666 3814 6.380560 ACTGTATACAGACCTTCTTACTTCCC 59.619 42.308 34.16 0.00 46.59 3.97
3667 3815 6.258354 TGTATACAGACCTTCTTACTTCCCA 58.742 40.000 0.08 0.00 0.00 4.37
3668 3816 6.901300 TGTATACAGACCTTCTTACTTCCCAT 59.099 38.462 0.08 0.00 0.00 4.00
3669 3817 4.559862 ACAGACCTTCTTACTTCCCATG 57.440 45.455 0.00 0.00 0.00 3.66
3670 3818 3.910627 ACAGACCTTCTTACTTCCCATGT 59.089 43.478 0.00 0.00 0.00 3.21
3671 3819 4.256920 CAGACCTTCTTACTTCCCATGTG 58.743 47.826 0.00 0.00 0.00 3.21
3672 3820 4.020218 CAGACCTTCTTACTTCCCATGTGA 60.020 45.833 0.00 0.00 0.00 3.58
3673 3821 4.597507 AGACCTTCTTACTTCCCATGTGAA 59.402 41.667 0.00 0.00 0.00 3.18
3674 3822 5.073144 AGACCTTCTTACTTCCCATGTGAAA 59.927 40.000 0.00 0.00 0.00 2.69
3675 3823 5.701224 ACCTTCTTACTTCCCATGTGAAAA 58.299 37.500 0.00 0.00 0.00 2.29
3676 3824 5.770162 ACCTTCTTACTTCCCATGTGAAAAG 59.230 40.000 0.00 0.00 0.00 2.27
3677 3825 6.003950 CCTTCTTACTTCCCATGTGAAAAGA 58.996 40.000 2.13 2.13 0.00 2.52
3678 3826 6.150140 CCTTCTTACTTCCCATGTGAAAAGAG 59.850 42.308 5.55 0.00 28.29 2.85
3679 3827 5.560724 TCTTACTTCCCATGTGAAAAGAGG 58.439 41.667 2.13 0.00 0.00 3.69
3680 3828 3.160679 ACTTCCCATGTGAAAAGAGGG 57.839 47.619 0.00 0.00 40.98 4.30
3681 3829 2.225117 ACTTCCCATGTGAAAAGAGGGG 60.225 50.000 0.00 0.00 40.02 4.79
3682 3830 0.704076 TCCCATGTGAAAAGAGGGGG 59.296 55.000 0.00 0.00 40.02 5.40
3683 3831 0.409484 CCCATGTGAAAAGAGGGGGT 59.591 55.000 0.00 0.00 35.83 4.95
3684 3832 1.638589 CCCATGTGAAAAGAGGGGGTA 59.361 52.381 0.00 0.00 35.83 3.69
3685 3833 2.042433 CCCATGTGAAAAGAGGGGGTAA 59.958 50.000 0.00 0.00 35.83 2.85
3686 3834 3.356290 CCATGTGAAAAGAGGGGGTAAG 58.644 50.000 0.00 0.00 0.00 2.34
3687 3835 3.010138 CCATGTGAAAAGAGGGGGTAAGA 59.990 47.826 0.00 0.00 0.00 2.10
3688 3836 4.508405 CCATGTGAAAAGAGGGGGTAAGAA 60.508 45.833 0.00 0.00 0.00 2.52
3689 3837 4.367039 TGTGAAAAGAGGGGGTAAGAAG 57.633 45.455 0.00 0.00 0.00 2.85
3690 3838 3.073946 TGTGAAAAGAGGGGGTAAGAAGG 59.926 47.826 0.00 0.00 0.00 3.46
3691 3839 3.329814 GTGAAAAGAGGGGGTAAGAAGGA 59.670 47.826 0.00 0.00 0.00 3.36
3692 3840 3.587506 TGAAAAGAGGGGGTAAGAAGGAG 59.412 47.826 0.00 0.00 0.00 3.69
3693 3841 1.585895 AAGAGGGGGTAAGAAGGAGC 58.414 55.000 0.00 0.00 0.00 4.70
3694 3842 0.417841 AGAGGGGGTAAGAAGGAGCA 59.582 55.000 0.00 0.00 0.00 4.26
3695 3843 1.010170 AGAGGGGGTAAGAAGGAGCAT 59.990 52.381 0.00 0.00 0.00 3.79
3696 3844 2.250273 AGAGGGGGTAAGAAGGAGCATA 59.750 50.000 0.00 0.00 0.00 3.14
3697 3845 3.116159 AGAGGGGGTAAGAAGGAGCATAT 60.116 47.826 0.00 0.00 0.00 1.78
3698 3846 2.982488 AGGGGGTAAGAAGGAGCATATG 59.018 50.000 0.00 0.00 0.00 1.78
3699 3847 2.711547 GGGGGTAAGAAGGAGCATATGT 59.288 50.000 4.29 0.00 0.00 2.29
3700 3848 3.138468 GGGGGTAAGAAGGAGCATATGTT 59.862 47.826 4.29 0.00 0.00 2.71
3701 3849 4.349930 GGGGGTAAGAAGGAGCATATGTTA 59.650 45.833 4.29 0.00 0.00 2.41
3702 3850 5.163131 GGGGGTAAGAAGGAGCATATGTTAA 60.163 44.000 4.29 0.00 0.00 2.01
3703 3851 6.362248 GGGGTAAGAAGGAGCATATGTTAAA 58.638 40.000 4.29 0.00 0.00 1.52
3704 3852 6.831868 GGGGTAAGAAGGAGCATATGTTAAAA 59.168 38.462 4.29 0.00 0.00 1.52
3705 3853 7.505923 GGGGTAAGAAGGAGCATATGTTAAAAT 59.494 37.037 4.29 0.00 0.00 1.82
3706 3854 8.568794 GGGTAAGAAGGAGCATATGTTAAAATC 58.431 37.037 4.29 0.00 0.00 2.17
3707 3855 8.568794 GGTAAGAAGGAGCATATGTTAAAATCC 58.431 37.037 4.29 3.38 0.00 3.01
3708 3856 7.588497 AAGAAGGAGCATATGTTAAAATCCC 57.412 36.000 4.29 0.00 0.00 3.85
3709 3857 6.672593 AGAAGGAGCATATGTTAAAATCCCA 58.327 36.000 4.29 0.00 0.00 4.37
3710 3858 7.125391 AGAAGGAGCATATGTTAAAATCCCAA 58.875 34.615 4.29 0.00 0.00 4.12
3711 3859 7.619302 AGAAGGAGCATATGTTAAAATCCCAAA 59.381 33.333 4.29 0.00 0.00 3.28
3712 3860 7.919385 AGGAGCATATGTTAAAATCCCAAAT 57.081 32.000 4.29 0.00 0.00 2.32
3713 3861 8.322905 AGGAGCATATGTTAAAATCCCAAATT 57.677 30.769 4.29 0.00 0.00 1.82
3714 3862 8.424133 AGGAGCATATGTTAAAATCCCAAATTC 58.576 33.333 4.29 0.00 0.00 2.17
3715 3863 8.424133 GGAGCATATGTTAAAATCCCAAATTCT 58.576 33.333 4.29 0.00 0.00 2.40
3727 3875 5.835113 TCCCAAATTCTAATTAGTGCAGC 57.165 39.130 12.19 0.00 0.00 5.25
3728 3876 5.509498 TCCCAAATTCTAATTAGTGCAGCT 58.491 37.500 12.19 0.00 0.00 4.24
3729 3877 5.357878 TCCCAAATTCTAATTAGTGCAGCTG 59.642 40.000 10.11 10.11 0.00 4.24
3730 3878 5.039333 CCAAATTCTAATTAGTGCAGCTGC 58.961 41.667 31.89 31.89 42.50 5.25
3741 3889 3.092081 GCAGCTGCACTTTTTACGG 57.908 52.632 33.36 0.00 41.59 4.02
3742 3890 0.310854 GCAGCTGCACTTTTTACGGT 59.689 50.000 33.36 0.00 41.59 4.83
3743 3891 1.269051 GCAGCTGCACTTTTTACGGTT 60.269 47.619 33.36 0.00 41.59 4.44
3744 3892 2.650608 CAGCTGCACTTTTTACGGTTC 58.349 47.619 0.00 0.00 0.00 3.62
3745 3893 1.607148 AGCTGCACTTTTTACGGTTCC 59.393 47.619 1.02 0.00 0.00 3.62
3746 3894 1.662026 GCTGCACTTTTTACGGTTCCG 60.662 52.381 9.81 9.81 0.00 4.30
3747 3895 0.945813 TGCACTTTTTACGGTTCCGG 59.054 50.000 15.66 0.00 0.00 5.14
3748 3896 1.228533 GCACTTTTTACGGTTCCGGA 58.771 50.000 15.66 0.00 0.00 5.14
3749 3897 1.196127 GCACTTTTTACGGTTCCGGAG 59.804 52.381 15.66 0.00 0.00 4.63
3750 3898 1.196127 CACTTTTTACGGTTCCGGAGC 59.804 52.381 10.28 10.28 0.00 4.70
3751 3899 1.202675 ACTTTTTACGGTTCCGGAGCA 60.203 47.619 20.67 0.00 0.00 4.26
3752 3900 1.196127 CTTTTTACGGTTCCGGAGCAC 59.804 52.381 20.67 9.30 0.00 4.40
3753 3901 0.106335 TTTTACGGTTCCGGAGCACA 59.894 50.000 20.67 1.02 0.00 4.57
3754 3902 0.600782 TTTACGGTTCCGGAGCACAC 60.601 55.000 20.67 8.10 0.00 3.82
3755 3903 1.746322 TTACGGTTCCGGAGCACACA 61.746 55.000 20.67 0.00 0.00 3.72
3756 3904 2.424705 TACGGTTCCGGAGCACACAC 62.425 60.000 20.67 6.91 0.00 3.82
3757 3905 2.668550 GGTTCCGGAGCACACACC 60.669 66.667 20.67 12.76 0.00 4.16
3758 3906 2.668550 GTTCCGGAGCACACACCC 60.669 66.667 14.14 0.00 0.00 4.61
3759 3907 2.847234 TTCCGGAGCACACACCCT 60.847 61.111 3.34 0.00 0.00 4.34
3760 3908 2.448582 TTCCGGAGCACACACCCTT 61.449 57.895 3.34 0.00 0.00 3.95
3761 3909 2.358737 CCGGAGCACACACCCTTC 60.359 66.667 0.00 0.00 0.00 3.46
3762 3910 2.358737 CGGAGCACACACCCTTCC 60.359 66.667 0.00 0.00 0.00 3.46
3763 3911 2.034221 GGAGCACACACCCTTCCC 59.966 66.667 0.00 0.00 0.00 3.97
3764 3912 2.829384 GGAGCACACACCCTTCCCA 61.829 63.158 0.00 0.00 0.00 4.37
3765 3913 1.302832 GAGCACACACCCTTCCCAG 60.303 63.158 0.00 0.00 0.00 4.45
3766 3914 2.985847 GCACACACCCTTCCCAGC 60.986 66.667 0.00 0.00 0.00 4.85
3767 3915 2.282462 CACACACCCTTCCCAGCC 60.282 66.667 0.00 0.00 0.00 4.85
3768 3916 3.953775 ACACACCCTTCCCAGCCG 61.954 66.667 0.00 0.00 0.00 5.52
3769 3917 3.953775 CACACCCTTCCCAGCCGT 61.954 66.667 0.00 0.00 0.00 5.68
3770 3918 2.203877 ACACCCTTCCCAGCCGTA 60.204 61.111 0.00 0.00 0.00 4.02
3771 3919 2.291043 ACACCCTTCCCAGCCGTAG 61.291 63.158 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.487934 CGATGGTGCCTAGAAGATTGG 58.512 52.381 0.00 0.00 0.00 3.16
6 7 2.158900 ACCGATGGTGCCTAGAAGATTG 60.159 50.000 0.00 0.00 32.98 2.67
7 8 2.119495 ACCGATGGTGCCTAGAAGATT 58.881 47.619 0.00 0.00 32.98 2.40
8 9 1.794714 ACCGATGGTGCCTAGAAGAT 58.205 50.000 0.00 0.00 32.98 2.40
9 10 3.300032 ACCGATGGTGCCTAGAAGA 57.700 52.632 0.00 0.00 32.98 2.87
21 22 1.079819 AACGCACTCTCCACCGATG 60.080 57.895 0.00 0.00 0.00 3.84
22 23 1.079819 CAACGCACTCTCCACCGAT 60.080 57.895 0.00 0.00 0.00 4.18
23 24 1.532604 ATCAACGCACTCTCCACCGA 61.533 55.000 0.00 0.00 0.00 4.69
24 25 1.078759 GATCAACGCACTCTCCACCG 61.079 60.000 0.00 0.00 0.00 4.94
25 26 0.247736 AGATCAACGCACTCTCCACC 59.752 55.000 0.00 0.00 0.00 4.61
26 27 2.164624 ACTAGATCAACGCACTCTCCAC 59.835 50.000 0.00 0.00 0.00 4.02
27 28 2.447443 ACTAGATCAACGCACTCTCCA 58.553 47.619 0.00 0.00 0.00 3.86
28 29 3.512033 AACTAGATCAACGCACTCTCC 57.488 47.619 0.00 0.00 0.00 3.71
29 30 3.614616 CCAAACTAGATCAACGCACTCTC 59.385 47.826 0.00 0.00 0.00 3.20
30 31 3.006967 ACCAAACTAGATCAACGCACTCT 59.993 43.478 0.00 0.00 0.00 3.24
31 32 3.326747 ACCAAACTAGATCAACGCACTC 58.673 45.455 0.00 0.00 0.00 3.51
32 33 3.402628 ACCAAACTAGATCAACGCACT 57.597 42.857 0.00 0.00 0.00 4.40
33 34 4.092968 CCTAACCAAACTAGATCAACGCAC 59.907 45.833 0.00 0.00 0.00 5.34
34 35 4.250464 CCTAACCAAACTAGATCAACGCA 58.750 43.478 0.00 0.00 0.00 5.24
35 36 4.092968 CACCTAACCAAACTAGATCAACGC 59.907 45.833 0.00 0.00 0.00 4.84
36 37 5.475719 TCACCTAACCAAACTAGATCAACG 58.524 41.667 0.00 0.00 0.00 4.10
37 38 7.923414 AATCACCTAACCAAACTAGATCAAC 57.077 36.000 0.00 0.00 0.00 3.18
38 39 7.942341 ACAAATCACCTAACCAAACTAGATCAA 59.058 33.333 0.00 0.00 0.00 2.57
39 40 7.458397 ACAAATCACCTAACCAAACTAGATCA 58.542 34.615 0.00 0.00 0.00 2.92
40 41 7.201530 CGACAAATCACCTAACCAAACTAGATC 60.202 40.741 0.00 0.00 0.00 2.75
41 42 6.594159 CGACAAATCACCTAACCAAACTAGAT 59.406 38.462 0.00 0.00 0.00 1.98
42 43 5.929992 CGACAAATCACCTAACCAAACTAGA 59.070 40.000 0.00 0.00 0.00 2.43
43 44 5.699458 ACGACAAATCACCTAACCAAACTAG 59.301 40.000 0.00 0.00 0.00 2.57
44 45 5.467399 CACGACAAATCACCTAACCAAACTA 59.533 40.000 0.00 0.00 0.00 2.24
45 46 4.274950 CACGACAAATCACCTAACCAAACT 59.725 41.667 0.00 0.00 0.00 2.66
46 47 4.533222 CACGACAAATCACCTAACCAAAC 58.467 43.478 0.00 0.00 0.00 2.93
47 48 3.003897 GCACGACAAATCACCTAACCAAA 59.996 43.478 0.00 0.00 0.00 3.28
48 49 2.550606 GCACGACAAATCACCTAACCAA 59.449 45.455 0.00 0.00 0.00 3.67
49 50 2.147958 GCACGACAAATCACCTAACCA 58.852 47.619 0.00 0.00 0.00 3.67
50 51 2.423577 AGCACGACAAATCACCTAACC 58.576 47.619 0.00 0.00 0.00 2.85
51 52 4.868171 TCATAGCACGACAAATCACCTAAC 59.132 41.667 0.00 0.00 0.00 2.34
52 53 5.079689 TCATAGCACGACAAATCACCTAA 57.920 39.130 0.00 0.00 0.00 2.69
53 54 4.441495 CCTCATAGCACGACAAATCACCTA 60.441 45.833 0.00 0.00 0.00 3.08
54 55 3.525537 CTCATAGCACGACAAATCACCT 58.474 45.455 0.00 0.00 0.00 4.00
55 56 2.609459 CCTCATAGCACGACAAATCACC 59.391 50.000 0.00 0.00 0.00 4.02
56 57 3.062639 CACCTCATAGCACGACAAATCAC 59.937 47.826 0.00 0.00 0.00 3.06
57 58 3.261580 CACCTCATAGCACGACAAATCA 58.738 45.455 0.00 0.00 0.00 2.57
58 59 3.262420 ACACCTCATAGCACGACAAATC 58.738 45.455 0.00 0.00 0.00 2.17
59 60 3.334583 ACACCTCATAGCACGACAAAT 57.665 42.857 0.00 0.00 0.00 2.32
60 61 2.831685 ACACCTCATAGCACGACAAA 57.168 45.000 0.00 0.00 0.00 2.83
61 62 2.805671 CAAACACCTCATAGCACGACAA 59.194 45.455 0.00 0.00 0.00 3.18
62 63 2.036604 TCAAACACCTCATAGCACGACA 59.963 45.455 0.00 0.00 0.00 4.35
63 64 2.683968 TCAAACACCTCATAGCACGAC 58.316 47.619 0.00 0.00 0.00 4.34
64 65 3.610040 ATCAAACACCTCATAGCACGA 57.390 42.857 0.00 0.00 0.00 4.35
65 66 3.555956 GGTATCAAACACCTCATAGCACG 59.444 47.826 0.00 0.00 32.98 5.34
66 67 3.555956 CGGTATCAAACACCTCATAGCAC 59.444 47.826 0.00 0.00 33.62 4.40
67 68 3.431626 CCGGTATCAAACACCTCATAGCA 60.432 47.826 0.00 0.00 33.62 3.49
68 69 3.131396 CCGGTATCAAACACCTCATAGC 58.869 50.000 0.00 0.00 33.62 2.97
69 70 3.494398 CCCCGGTATCAAACACCTCATAG 60.494 52.174 0.00 0.00 33.62 2.23
70 71 2.436542 CCCCGGTATCAAACACCTCATA 59.563 50.000 0.00 0.00 33.62 2.15
71 72 1.211949 CCCCGGTATCAAACACCTCAT 59.788 52.381 0.00 0.00 33.62 2.90
72 73 0.616371 CCCCGGTATCAAACACCTCA 59.384 55.000 0.00 0.00 33.62 3.86
73 74 0.107361 CCCCCGGTATCAAACACCTC 60.107 60.000 0.00 0.00 33.62 3.85
74 75 0.548197 TCCCCCGGTATCAAACACCT 60.548 55.000 0.00 0.00 33.62 4.00
75 76 0.393402 GTCCCCCGGTATCAAACACC 60.393 60.000 0.00 0.00 0.00 4.16
76 77 0.741927 CGTCCCCCGGTATCAAACAC 60.742 60.000 0.00 0.00 0.00 3.32
77 78 1.597989 CGTCCCCCGGTATCAAACA 59.402 57.895 0.00 0.00 0.00 2.83
78 79 1.816679 GCGTCCCCCGGTATCAAAC 60.817 63.158 0.00 0.00 36.94 2.93
79 80 2.585698 GCGTCCCCCGGTATCAAA 59.414 61.111 0.00 0.00 36.94 2.69
80 81 3.840594 CGCGTCCCCCGGTATCAA 61.841 66.667 0.00 0.00 36.94 2.57
95 96 4.996434 ACAGAGCACACAGGCCGC 62.996 66.667 0.00 0.00 0.00 6.53
96 97 3.046087 CACAGAGCACACAGGCCG 61.046 66.667 0.00 0.00 0.00 6.13
97 98 1.963338 GACACAGAGCACACAGGCC 60.963 63.158 0.00 0.00 0.00 5.19
98 99 1.963338 GGACACAGAGCACACAGGC 60.963 63.158 0.00 0.00 0.00 4.85
99 100 1.665916 CGGACACAGAGCACACAGG 60.666 63.158 0.00 0.00 0.00 4.00
100 101 0.313987 TACGGACACAGAGCACACAG 59.686 55.000 0.00 0.00 0.00 3.66
101 102 0.031585 GTACGGACACAGAGCACACA 59.968 55.000 0.00 0.00 0.00 3.72
102 103 0.314302 AGTACGGACACAGAGCACAC 59.686 55.000 0.00 0.00 0.00 3.82
103 104 1.037493 AAGTACGGACACAGAGCACA 58.963 50.000 0.00 0.00 0.00 4.57
104 105 2.150397 AAAGTACGGACACAGAGCAC 57.850 50.000 0.00 0.00 0.00 4.40
105 106 2.750948 GAAAAGTACGGACACAGAGCA 58.249 47.619 0.00 0.00 0.00 4.26
106 107 1.719780 CGAAAAGTACGGACACAGAGC 59.280 52.381 0.00 0.00 0.00 4.09
107 108 1.719780 GCGAAAAGTACGGACACAGAG 59.280 52.381 0.00 0.00 0.00 3.35
108 109 1.603678 GGCGAAAAGTACGGACACAGA 60.604 52.381 0.00 0.00 0.00 3.41
109 110 0.788391 GGCGAAAAGTACGGACACAG 59.212 55.000 0.00 0.00 0.00 3.66
110 111 0.104487 TGGCGAAAAGTACGGACACA 59.896 50.000 0.00 0.00 0.00 3.72
111 112 1.435577 ATGGCGAAAAGTACGGACAC 58.564 50.000 0.00 0.00 0.00 3.67
112 113 1.801771 CAATGGCGAAAAGTACGGACA 59.198 47.619 0.00 0.00 0.00 4.02
113 114 1.802365 ACAATGGCGAAAAGTACGGAC 59.198 47.619 0.00 0.00 0.00 4.79
114 115 2.172851 ACAATGGCGAAAAGTACGGA 57.827 45.000 0.00 0.00 0.00 4.69
115 116 2.977169 CAAACAATGGCGAAAAGTACGG 59.023 45.455 0.00 0.00 0.00 4.02
116 117 2.977169 CCAAACAATGGCGAAAAGTACG 59.023 45.455 0.00 0.00 43.80 3.67
128 129 3.132925 CCCAAACTCAAGCCAAACAATG 58.867 45.455 0.00 0.00 0.00 2.82
129 130 2.485302 GCCCAAACTCAAGCCAAACAAT 60.485 45.455 0.00 0.00 0.00 2.71
130 131 1.134551 GCCCAAACTCAAGCCAAACAA 60.135 47.619 0.00 0.00 0.00 2.83
131 132 0.463620 GCCCAAACTCAAGCCAAACA 59.536 50.000 0.00 0.00 0.00 2.83
132 133 0.463620 TGCCCAAACTCAAGCCAAAC 59.536 50.000 0.00 0.00 0.00 2.93
133 134 1.138661 CTTGCCCAAACTCAAGCCAAA 59.861 47.619 0.00 0.00 34.12 3.28
134 135 0.752054 CTTGCCCAAACTCAAGCCAA 59.248 50.000 0.00 0.00 34.12 4.52
135 136 1.114722 CCTTGCCCAAACTCAAGCCA 61.115 55.000 0.00 0.00 38.59 4.75
136 137 1.667722 CCTTGCCCAAACTCAAGCC 59.332 57.895 0.00 0.00 38.59 4.35
137 138 1.115326 ACCCTTGCCCAAACTCAAGC 61.115 55.000 0.00 0.00 38.59 4.01
138 139 0.675633 CACCCTTGCCCAAACTCAAG 59.324 55.000 0.00 0.00 39.38 3.02
139 140 0.032615 ACACCCTTGCCCAAACTCAA 60.033 50.000 0.00 0.00 0.00 3.02
140 141 0.032615 AACACCCTTGCCCAAACTCA 60.033 50.000 0.00 0.00 0.00 3.41
141 142 1.886542 CTAACACCCTTGCCCAAACTC 59.113 52.381 0.00 0.00 0.00 3.01
142 143 1.216930 ACTAACACCCTTGCCCAAACT 59.783 47.619 0.00 0.00 0.00 2.66
143 144 1.699730 ACTAACACCCTTGCCCAAAC 58.300 50.000 0.00 0.00 0.00 2.93
144 145 2.035632 CAACTAACACCCTTGCCCAAA 58.964 47.619 0.00 0.00 0.00 3.28
145 146 1.698506 CAACTAACACCCTTGCCCAA 58.301 50.000 0.00 0.00 0.00 4.12
146 147 0.825840 GCAACTAACACCCTTGCCCA 60.826 55.000 0.00 0.00 35.29 5.36
147 148 1.964448 GCAACTAACACCCTTGCCC 59.036 57.895 0.00 0.00 35.29 5.36
149 150 0.887387 TCGGCAACTAACACCCTTGC 60.887 55.000 0.00 0.00 39.70 4.01
150 151 1.468520 CATCGGCAACTAACACCCTTG 59.531 52.381 0.00 0.00 0.00 3.61
151 152 1.073284 ACATCGGCAACTAACACCCTT 59.927 47.619 0.00 0.00 0.00 3.95
152 153 0.690762 ACATCGGCAACTAACACCCT 59.309 50.000 0.00 0.00 0.00 4.34
153 154 1.199097 CAACATCGGCAACTAACACCC 59.801 52.381 0.00 0.00 0.00 4.61
154 155 1.877443 ACAACATCGGCAACTAACACC 59.123 47.619 0.00 0.00 0.00 4.16
155 156 2.546368 TGACAACATCGGCAACTAACAC 59.454 45.455 0.00 0.00 0.00 3.32
156 157 2.839975 TGACAACATCGGCAACTAACA 58.160 42.857 0.00 0.00 0.00 2.41
157 158 3.426159 CCATGACAACATCGGCAACTAAC 60.426 47.826 0.00 0.00 34.15 2.34
158 159 2.746904 CCATGACAACATCGGCAACTAA 59.253 45.455 0.00 0.00 34.15 2.24
159 160 2.290008 ACCATGACAACATCGGCAACTA 60.290 45.455 0.00 0.00 34.15 2.24
160 161 1.167851 CCATGACAACATCGGCAACT 58.832 50.000 0.00 0.00 34.15 3.16
161 162 0.881118 ACCATGACAACATCGGCAAC 59.119 50.000 0.00 0.00 34.15 4.17
162 163 0.880441 CACCATGACAACATCGGCAA 59.120 50.000 0.00 0.00 34.15 4.52
163 164 0.959867 CCACCATGACAACATCGGCA 60.960 55.000 0.00 0.00 34.15 5.69
164 165 0.960364 ACCACCATGACAACATCGGC 60.960 55.000 0.00 0.00 34.15 5.54
165 166 1.199789 CAACCACCATGACAACATCGG 59.800 52.381 0.00 0.00 34.15 4.18
166 167 1.879380 ACAACCACCATGACAACATCG 59.121 47.619 0.00 0.00 34.15 3.84
167 168 2.030007 CCACAACCACCATGACAACATC 60.030 50.000 0.00 0.00 34.15 3.06
168 169 1.962807 CCACAACCACCATGACAACAT 59.037 47.619 0.00 0.00 37.19 2.71
169 170 1.397672 CCACAACCACCATGACAACA 58.602 50.000 0.00 0.00 0.00 3.33
170 171 0.673437 CCCACAACCACCATGACAAC 59.327 55.000 0.00 0.00 0.00 3.32
171 172 0.260230 ACCCACAACCACCATGACAA 59.740 50.000 0.00 0.00 0.00 3.18
172 173 0.467106 CACCCACAACCACCATGACA 60.467 55.000 0.00 0.00 0.00 3.58
173 174 0.467290 ACACCCACAACCACCATGAC 60.467 55.000 0.00 0.00 0.00 3.06
174 175 0.260230 AACACCCACAACCACCATGA 59.740 50.000 0.00 0.00 0.00 3.07
175 176 1.988293 TAACACCCACAACCACCATG 58.012 50.000 0.00 0.00 0.00 3.66
176 177 2.312390 GTTAACACCCACAACCACCAT 58.688 47.619 0.00 0.00 0.00 3.55
177 178 1.685491 GGTTAACACCCACAACCACCA 60.685 52.381 8.10 0.00 41.17 4.17
178 179 1.034356 GGTTAACACCCACAACCACC 58.966 55.000 8.10 0.00 41.17 4.61
179 180 1.951602 GAGGTTAACACCCACAACCAC 59.048 52.381 8.10 0.00 45.63 4.16
180 181 1.847737 AGAGGTTAACACCCACAACCA 59.152 47.619 8.10 0.00 45.63 3.67
181 182 2.501261 GAGAGGTTAACACCCACAACC 58.499 52.381 8.10 0.00 45.63 3.77
182 183 2.140717 CGAGAGGTTAACACCCACAAC 58.859 52.381 8.10 0.00 45.63 3.32
183 184 2.536761 CGAGAGGTTAACACCCACAA 57.463 50.000 8.10 0.00 45.63 3.33
197 198 1.746615 CAATGTGCCACCCCGAGAG 60.747 63.158 0.00 0.00 0.00 3.20
198 199 2.350895 CAATGTGCCACCCCGAGA 59.649 61.111 0.00 0.00 0.00 4.04
199 200 3.443045 GCAATGTGCCACCCCGAG 61.443 66.667 0.00 0.00 37.42 4.63
216 217 0.373716 GCTGATACAACGCCTTTCGG 59.626 55.000 0.00 0.00 43.86 4.30
217 218 0.373716 GGCTGATACAACGCCTTTCG 59.626 55.000 0.00 0.00 40.62 3.46
218 219 0.373716 CGGCTGATACAACGCCTTTC 59.626 55.000 0.00 0.00 41.61 2.62
219 220 0.321298 ACGGCTGATACAACGCCTTT 60.321 50.000 0.00 0.00 41.61 3.11
220 221 0.739813 GACGGCTGATACAACGCCTT 60.740 55.000 0.00 0.00 41.61 4.35
221 222 1.153628 GACGGCTGATACAACGCCT 60.154 57.895 0.00 0.00 41.61 5.52
222 223 0.739813 AAGACGGCTGATACAACGCC 60.740 55.000 0.00 0.00 40.40 5.68
223 224 0.370273 CAAGACGGCTGATACAACGC 59.630 55.000 0.00 0.00 0.00 4.84
224 225 0.999406 CCAAGACGGCTGATACAACG 59.001 55.000 0.00 0.00 0.00 4.10
235 236 3.131223 TCATAGAAGAAGAGCCAAGACGG 59.869 47.826 0.00 0.00 38.11 4.79
236 237 4.377839 TCATAGAAGAAGAGCCAAGACG 57.622 45.455 0.00 0.00 0.00 4.18
248 249 9.468532 GCATGCGTATCATATATTCATAGAAGA 57.531 33.333 0.00 0.00 33.19 2.87
249 250 9.473640 AGCATGCGTATCATATATTCATAGAAG 57.526 33.333 13.01 0.00 33.19 2.85
250 251 9.822185 AAGCATGCGTATCATATATTCATAGAA 57.178 29.630 13.01 0.00 33.19 2.10
251 252 9.252962 CAAGCATGCGTATCATATATTCATAGA 57.747 33.333 13.01 0.00 33.19 1.98
252 253 9.038803 ACAAGCATGCGTATCATATATTCATAG 57.961 33.333 13.01 0.00 33.19 2.23
253 254 8.819974 CACAAGCATGCGTATCATATATTCATA 58.180 33.333 13.01 0.00 33.19 2.15
254 255 7.677982 GCACAAGCATGCGTATCATATATTCAT 60.678 37.037 13.01 0.00 41.58 2.57
255 256 6.402442 GCACAAGCATGCGTATCATATATTCA 60.402 38.462 13.01 0.00 41.58 2.57
256 257 5.961843 GCACAAGCATGCGTATCATATATTC 59.038 40.000 13.01 0.00 41.58 1.75
257 258 5.872635 GCACAAGCATGCGTATCATATATT 58.127 37.500 13.01 0.00 41.58 1.28
258 259 5.475273 GCACAAGCATGCGTATCATATAT 57.525 39.130 13.01 0.00 41.58 0.86
259 260 4.926860 GCACAAGCATGCGTATCATATA 57.073 40.909 13.01 0.00 41.58 0.86
260 261 3.818961 GCACAAGCATGCGTATCATAT 57.181 42.857 13.01 0.00 41.58 1.78
269 270 0.373370 TCGAATACGCACAAGCATGC 59.627 50.000 10.51 10.51 42.27 4.06
270 271 1.926510 TCTCGAATACGCACAAGCATG 59.073 47.619 0.00 0.00 42.27 4.06
271 272 2.293677 TCTCGAATACGCACAAGCAT 57.706 45.000 0.00 0.00 42.27 3.79
272 273 2.073117 TTCTCGAATACGCACAAGCA 57.927 45.000 0.00 0.00 42.27 3.91
273 274 3.449322 TTTTCTCGAATACGCACAAGC 57.551 42.857 0.00 0.00 39.58 4.01
274 275 5.018695 AGTTTTTCTCGAATACGCACAAG 57.981 39.130 0.00 0.00 39.58 3.16
275 276 6.715344 ATAGTTTTTCTCGAATACGCACAA 57.285 33.333 0.00 0.00 39.58 3.33
276 277 6.715344 AATAGTTTTTCTCGAATACGCACA 57.285 33.333 0.00 0.00 39.58 4.57
277 278 9.698617 ATAAAATAGTTTTTCTCGAATACGCAC 57.301 29.630 0.00 0.00 36.47 5.34
278 279 9.697250 CATAAAATAGTTTTTCTCGAATACGCA 57.303 29.630 0.00 0.00 36.47 5.24
279 280 8.670668 GCATAAAATAGTTTTTCTCGAATACGC 58.329 33.333 0.00 0.00 36.47 4.42
280 281 9.155053 GGCATAAAATAGTTTTTCTCGAATACG 57.845 33.333 0.00 0.00 36.47 3.06
281 282 9.997482 TGGCATAAAATAGTTTTTCTCGAATAC 57.003 29.630 0.00 0.00 36.47 1.89
282 283 9.997482 GTGGCATAAAATAGTTTTTCTCGAATA 57.003 29.630 0.00 0.00 36.47 1.75
283 284 8.519526 TGTGGCATAAAATAGTTTTTCTCGAAT 58.480 29.630 0.00 0.00 36.47 3.34
284 285 7.877003 TGTGGCATAAAATAGTTTTTCTCGAA 58.123 30.769 0.00 0.00 36.47 3.71
285 286 7.441890 TGTGGCATAAAATAGTTTTTCTCGA 57.558 32.000 0.00 0.00 36.47 4.04
286 287 7.754924 ACATGTGGCATAAAATAGTTTTTCTCG 59.245 33.333 0.00 0.00 36.47 4.04
287 288 8.986477 ACATGTGGCATAAAATAGTTTTTCTC 57.014 30.769 0.00 0.00 36.47 2.87
293 294 8.632679 CCAATCTACATGTGGCATAAAATAGTT 58.367 33.333 9.11 0.00 0.00 2.24
301 302 5.368230 TCCTTACCAATCTACATGTGGCATA 59.632 40.000 9.11 0.00 35.72 3.14
305 306 4.451900 GGTCCTTACCAATCTACATGTGG 58.548 47.826 9.11 5.55 45.98 4.17
323 324 7.283127 TCAGCATCATACATTCTTAAAAGGTCC 59.717 37.037 0.00 0.00 0.00 4.46
329 330 8.959548 ACAACATCAGCATCATACATTCTTAAA 58.040 29.630 0.00 0.00 0.00 1.52
331 332 7.769970 TCACAACATCAGCATCATACATTCTTA 59.230 33.333 0.00 0.00 0.00 2.10
352 353 6.507958 TTCCGCATCTTATGAAAATCACAA 57.492 33.333 0.00 0.00 0.00 3.33
425 426 8.099364 TCAGATCTTCACTCAAAACCAAATAC 57.901 34.615 0.00 0.00 0.00 1.89
430 431 4.456911 GCATCAGATCTTCACTCAAAACCA 59.543 41.667 0.00 0.00 0.00 3.67
433 434 5.392703 GCATGCATCAGATCTTCACTCAAAA 60.393 40.000 14.21 0.00 0.00 2.44
559 560 1.226435 TTCAACGCCGTGCAAACAC 60.226 52.632 0.00 0.00 43.76 3.32
570 571 1.298859 ATGCCCGAGAAGTTCAACGC 61.299 55.000 5.50 1.77 0.00 4.84
573 574 2.859165 AAGATGCCCGAGAAGTTCAA 57.141 45.000 5.50 0.00 0.00 2.69
577 578 2.569404 AGAGAAAAGATGCCCGAGAAGT 59.431 45.455 0.00 0.00 0.00 3.01
582 583 2.485479 GCCATAGAGAAAAGATGCCCGA 60.485 50.000 0.00 0.00 0.00 5.14
596 597 1.374947 GCCTAATGCGGGCCATAGA 59.625 57.895 4.39 0.00 43.49 1.98
606 607 4.159506 TGGTAATTGGTGAAAGCCTAATGC 59.840 41.667 0.00 0.00 41.71 3.56
665 743 3.448660 GGCTGGCATTTGAGGACTAAATT 59.551 43.478 0.00 0.00 0.00 1.82
669 747 1.289160 AGGCTGGCATTTGAGGACTA 58.711 50.000 3.38 0.00 0.00 2.59
670 748 1.211457 CTAGGCTGGCATTTGAGGACT 59.789 52.381 3.38 0.00 0.00 3.85
673 751 1.747355 CAACTAGGCTGGCATTTGAGG 59.253 52.381 3.38 0.00 0.00 3.86
697 775 6.183360 ACAGACTAGCAACAGTGTTCTCTAAA 60.183 38.462 5.27 0.00 0.00 1.85
773 851 9.656040 TCAAAGCATATTTTCTTGCATAACAAT 57.344 25.926 0.00 0.00 41.35 2.71
774 852 9.656040 ATCAAAGCATATTTTCTTGCATAACAA 57.344 25.926 0.00 0.00 41.35 2.83
775 853 9.304731 GATCAAAGCATATTTTCTTGCATAACA 57.695 29.630 0.00 0.00 41.35 2.41
837 919 1.742880 CAGGCCCACATGTCAGACG 60.743 63.158 0.00 0.00 0.00 4.18
839 921 1.133181 TTCCAGGCCCACATGTCAGA 61.133 55.000 0.00 0.00 0.00 3.27
856 938 1.523758 CTAGGTGGTGCCACTGTTTC 58.476 55.000 19.37 4.20 45.52 2.78
899 982 2.163613 CCCTTTTAACAGCCAATCCGAC 59.836 50.000 0.00 0.00 0.00 4.79
900 983 2.442413 CCCTTTTAACAGCCAATCCGA 58.558 47.619 0.00 0.00 0.00 4.55
901 984 1.476488 CCCCTTTTAACAGCCAATCCG 59.524 52.381 0.00 0.00 0.00 4.18
903 986 3.699538 CCTACCCCTTTTAACAGCCAATC 59.300 47.826 0.00 0.00 0.00 2.67
904 987 3.076937 ACCTACCCCTTTTAACAGCCAAT 59.923 43.478 0.00 0.00 0.00 3.16
905 988 2.447811 ACCTACCCCTTTTAACAGCCAA 59.552 45.455 0.00 0.00 0.00 4.52
906 989 2.067386 ACCTACCCCTTTTAACAGCCA 58.933 47.619 0.00 0.00 0.00 4.75
907 990 2.823747 CAACCTACCCCTTTTAACAGCC 59.176 50.000 0.00 0.00 0.00 4.85
908 991 2.823747 CCAACCTACCCCTTTTAACAGC 59.176 50.000 0.00 0.00 0.00 4.40
909 992 4.108501 ACCAACCTACCCCTTTTAACAG 57.891 45.455 0.00 0.00 0.00 3.16
910 993 4.912744 TCTACCAACCTACCCCTTTTAACA 59.087 41.667 0.00 0.00 0.00 2.41
911 994 5.503634 TCTACCAACCTACCCCTTTTAAC 57.496 43.478 0.00 0.00 0.00 2.01
912 995 6.723471 AATCTACCAACCTACCCCTTTTAA 57.277 37.500 0.00 0.00 0.00 1.52
913 996 6.486941 CAAATCTACCAACCTACCCCTTTTA 58.513 40.000 0.00 0.00 0.00 1.52
914 997 5.330233 CAAATCTACCAACCTACCCCTTTT 58.670 41.667 0.00 0.00 0.00 2.27
915 998 4.264217 CCAAATCTACCAACCTACCCCTTT 60.264 45.833 0.00 0.00 0.00 3.11
925 1008 4.380550 GCACTAAAGCCCAAATCTACCAAC 60.381 45.833 0.00 0.00 0.00 3.77
937 1020 6.588756 GGTTTAAACAATTAGCACTAAAGCCC 59.411 38.462 19.57 0.00 34.23 5.19
943 1026 7.502895 TGGAACTGGTTTAAACAATTAGCACTA 59.497 33.333 19.57 5.75 0.00 2.74
945 1028 6.419710 GTGGAACTGGTTTAAACAATTAGCAC 59.580 38.462 19.57 10.75 0.00 4.40
946 1029 6.508777 GTGGAACTGGTTTAAACAATTAGCA 58.491 36.000 19.57 6.61 0.00 3.49
965 1054 0.472471 GTGGTGGAGTGGAAGTGGAA 59.528 55.000 0.00 0.00 0.00 3.53
972 1061 0.041238 CTAGGGAGTGGTGGAGTGGA 59.959 60.000 0.00 0.00 0.00 4.02
983 1072 1.727062 CATGGATGGAGCTAGGGAGT 58.273 55.000 0.00 0.00 0.00 3.85
997 1090 4.451150 GGTCAGCGACGCCATGGA 62.451 66.667 18.40 6.61 32.65 3.41
1010 1103 3.640407 GGCAGGAGCTGGTGGTCA 61.640 66.667 0.00 0.00 42.05 4.02
1081 1177 3.110178 CGACGGAAAGCGGTGTCC 61.110 66.667 14.16 14.16 0.00 4.02
1138 1234 1.079057 GGTCCACCTCGAAGAAGGC 60.079 63.158 0.00 0.00 34.09 4.35
1495 1591 2.125269 GCCAAGGTACACCGCGAT 60.125 61.111 8.23 0.00 42.08 4.58
1570 1666 1.873903 CGGAGTTGTGGAGTGGAAGTG 60.874 57.143 0.00 0.00 0.00 3.16
1683 1782 0.955428 TCTTTGACTGCACATCGGCC 60.955 55.000 0.00 0.00 0.00 6.13
1770 1869 1.668047 GGGTTCGTGTACCAGAACTCG 60.668 57.143 21.82 0.91 44.33 4.18
1875 1974 2.894240 AAACAGCACCGACGACGTGT 62.894 55.000 4.58 0.00 37.88 4.49
1878 1977 2.544359 CAAACAGCACCGACGACG 59.456 61.111 0.00 0.00 39.43 5.12
1920 2019 1.070786 GAGAAGCGGGTTGACACCA 59.929 57.895 0.00 0.00 46.43 4.17
2089 2188 1.741706 GTGATCCAACCACAGATGCAG 59.258 52.381 0.00 0.00 34.81 4.41
2091 2190 1.825090 TGTGATCCAACCACAGATGC 58.175 50.000 0.00 0.00 39.36 3.91
2154 2253 0.250124 AGTCCACATTTGCCGACGAA 60.250 50.000 0.00 0.00 0.00 3.85
2175 2277 3.241530 TCCAGCCCGCTGAACTGT 61.242 61.111 18.19 0.00 46.30 3.55
2321 2423 3.730761 CCACTTGCTCACTGCCGC 61.731 66.667 0.00 0.00 42.00 6.53
2361 2463 1.890041 CGTGGCGGAAACACCTGAA 60.890 57.895 0.00 0.00 35.46 3.02
2389 2491 0.903236 TCTTCTGAGAGCAGCAGCAT 59.097 50.000 3.17 0.00 45.49 3.79
2397 2502 3.324993 CTGGTGAACTTCTTCTGAGAGC 58.675 50.000 0.00 0.00 32.44 4.09
2398 2503 3.323403 ACCTGGTGAACTTCTTCTGAGAG 59.677 47.826 0.00 0.00 32.44 3.20
2399 2504 3.309296 ACCTGGTGAACTTCTTCTGAGA 58.691 45.455 0.00 0.00 0.00 3.27
2451 2556 0.608640 ACTCATCACCCACTTCGTCC 59.391 55.000 0.00 0.00 0.00 4.79
2516 2621 2.673523 CTTGCTCCCCACCAGAGG 59.326 66.667 0.00 0.00 0.00 3.69
2541 2646 4.325028 CTCATTCTGCAGAGAGCTGTAT 57.675 45.455 17.43 2.51 45.94 2.29
2555 2660 1.446792 CGTGCCGACTGCTCATTCT 60.447 57.895 0.00 0.00 42.00 2.40
2628 2733 6.235664 GGTACCCACATATTTATACACCTGG 58.764 44.000 0.00 0.00 0.00 4.45
2678 2783 2.100916 ACGACAGTGTAGTTCTTGCTGT 59.899 45.455 2.84 0.00 42.29 4.40
2737 2842 2.176045 TCTGGAGCCATTAACTCGTGA 58.824 47.619 0.00 0.00 34.87 4.35
2738 2843 2.672961 TCTGGAGCCATTAACTCGTG 57.327 50.000 0.00 0.00 34.87 4.35
2739 2844 3.535561 CAATCTGGAGCCATTAACTCGT 58.464 45.455 0.00 0.00 34.87 4.18
2740 2845 2.289002 GCAATCTGGAGCCATTAACTCG 59.711 50.000 0.00 0.00 34.87 4.18
2741 2846 3.978718 GCAATCTGGAGCCATTAACTC 57.021 47.619 0.00 0.00 0.00 3.01
2760 2865 2.494870 TCGTCTAAACTAACTGGAGGGC 59.505 50.000 0.00 0.00 0.00 5.19
2784 2889 3.378911 TGCAGTACAGTTCGATCAACA 57.621 42.857 0.00 0.00 37.48 3.33
2828 2934 0.807667 CACACGAGGCACAGGATAGC 60.808 60.000 0.00 0.00 0.00 2.97
2829 2935 0.179100 CCACACGAGGCACAGGATAG 60.179 60.000 0.00 0.00 0.00 2.08
2878 2990 8.162880 CACTGATACATTCGAAAACAGTAAGTC 58.837 37.037 18.11 9.52 35.77 3.01
2882 2994 7.115805 GTGTCACTGATACATTCGAAAACAGTA 59.884 37.037 18.11 12.59 35.77 2.74
2910 3022 7.756722 AGCAGAATCATTTCGAACCAAATTAAG 59.243 33.333 0.00 0.00 36.93 1.85
2922 3034 2.417586 TGTGCAGAGCAGAATCATTTCG 59.582 45.455 0.00 0.00 40.08 3.46
2938 3050 3.446873 ACAGTTCATTTCAAACCTGTGCA 59.553 39.130 0.00 0.00 0.00 4.57
2979 3091 8.506437 CAGTAACAATGTCAGAAGCTTGATTAA 58.494 33.333 2.10 0.00 0.00 1.40
3009 3123 9.357652 GTGAACATGCAGAAAATAATGTAATGT 57.642 29.630 0.00 0.00 33.04 2.71
3010 3124 9.356433 TGTGAACATGCAGAAAATAATGTAATG 57.644 29.630 0.00 0.00 33.04 1.90
3050 3164 1.670967 GCAGCAAGGCCAAAATGAGAC 60.671 52.381 5.01 0.00 0.00 3.36
3102 3216 2.172483 TTGCTCTCCGTTCTCCAGCC 62.172 60.000 0.00 0.00 0.00 4.85
3112 3226 3.381045 TGCGACTATAAATTGCTCTCCG 58.619 45.455 0.00 0.00 0.00 4.63
3181 3295 1.172812 AGCACGCTTTGTTCTTCCCC 61.173 55.000 0.00 0.00 0.00 4.81
3239 3353 9.185192 CTTTTTATGAATGAACTGGAAGAACAC 57.815 33.333 0.00 0.00 37.43 3.32
3305 3420 2.031768 GCATCCGCCTCCATCTCC 59.968 66.667 0.00 0.00 0.00 3.71
3306 3421 1.146930 TTGCATCCGCCTCCATCTC 59.853 57.895 0.00 0.00 37.32 2.75
3307 3422 1.153086 GTTGCATCCGCCTCCATCT 60.153 57.895 0.00 0.00 37.32 2.90
3308 3423 0.106708 TAGTTGCATCCGCCTCCATC 59.893 55.000 0.00 0.00 37.32 3.51
3309 3424 0.546122 TTAGTTGCATCCGCCTCCAT 59.454 50.000 0.00 0.00 37.32 3.41
3310 3425 0.546122 ATTAGTTGCATCCGCCTCCA 59.454 50.000 0.00 0.00 37.32 3.86
3329 3444 4.142271 ACTTCGTTTTCCAATGTGAGCAAA 60.142 37.500 0.00 0.00 0.00 3.68
3358 3473 0.677731 ACCACCACATCAATGGAGCG 60.678 55.000 0.00 0.00 43.02 5.03
3372 3487 1.527433 GAGCTGGCTGGAAAACCACC 61.527 60.000 0.00 0.00 0.00 4.61
3391 3506 4.582240 ACTTGAAAGGCTCAGAAAGAAAGG 59.418 41.667 0.00 0.00 34.81 3.11
3463 3578 1.662044 CTGAAGGCAACAAGTGGGC 59.338 57.895 0.00 0.00 41.41 5.36
3475 3614 3.568538 CGGAAGTTTGAATTGCTGAAGG 58.431 45.455 0.00 0.00 0.00 3.46
3487 3626 1.532868 CAAGTCTCCAGCGGAAGTTTG 59.467 52.381 0.00 1.29 0.00 2.93
3519 3661 1.893062 GGTGCTGCCTGGAATTTCC 59.107 57.895 8.59 8.59 36.96 3.13
3538 3680 1.869767 CCATCCTTCGCTGCATAAGTC 59.130 52.381 0.00 0.00 0.00 3.01
3542 3684 2.484770 GGTAACCATCCTTCGCTGCATA 60.485 50.000 0.00 0.00 0.00 3.14
3562 3704 1.738099 CGAGGTGGCGTGAGAAAGG 60.738 63.158 0.00 0.00 0.00 3.11
3563 3705 0.242825 TACGAGGTGGCGTGAGAAAG 59.757 55.000 0.00 0.00 45.23 2.62
3568 3711 3.755628 GGCTACGAGGTGGCGTGA 61.756 66.667 0.00 0.00 45.23 4.35
3599 3747 1.622811 AGCAGTCAAGAGTCAGAAGGG 59.377 52.381 0.00 0.00 0.00 3.95
3633 3781 2.932614 GGTCTGTATACAGTGCAGCTTG 59.067 50.000 27.83 4.90 44.12 4.01
3634 3782 2.834549 AGGTCTGTATACAGTGCAGCTT 59.165 45.455 27.83 11.17 44.12 3.74
3635 3783 2.461695 AGGTCTGTATACAGTGCAGCT 58.538 47.619 27.83 21.19 44.12 4.24
3636 3784 2.969628 AGGTCTGTATACAGTGCAGC 57.030 50.000 27.83 19.57 44.12 5.25
3637 3785 4.727507 AGAAGGTCTGTATACAGTGCAG 57.272 45.455 27.83 7.64 44.12 4.41
3638 3786 5.715279 AGTAAGAAGGTCTGTATACAGTGCA 59.285 40.000 27.83 10.28 44.12 4.57
3639 3787 6.210287 AGTAAGAAGGTCTGTATACAGTGC 57.790 41.667 27.83 21.47 44.12 4.40
3640 3788 7.259161 GGAAGTAAGAAGGTCTGTATACAGTG 58.741 42.308 27.83 9.04 44.12 3.66
3641 3789 6.380560 GGGAAGTAAGAAGGTCTGTATACAGT 59.619 42.308 27.83 12.37 44.12 3.55
3642 3790 6.380274 TGGGAAGTAAGAAGGTCTGTATACAG 59.620 42.308 24.37 24.37 45.08 2.74
3643 3791 6.258354 TGGGAAGTAAGAAGGTCTGTATACA 58.742 40.000 5.25 5.25 0.00 2.29
3644 3792 6.786967 TGGGAAGTAAGAAGGTCTGTATAC 57.213 41.667 0.00 0.00 0.00 1.47
3645 3793 6.901300 ACATGGGAAGTAAGAAGGTCTGTATA 59.099 38.462 0.00 0.00 0.00 1.47
3646 3794 5.726793 ACATGGGAAGTAAGAAGGTCTGTAT 59.273 40.000 0.00 0.00 0.00 2.29
3647 3795 5.046591 CACATGGGAAGTAAGAAGGTCTGTA 60.047 44.000 0.00 0.00 0.00 2.74
3648 3796 3.910627 ACATGGGAAGTAAGAAGGTCTGT 59.089 43.478 0.00 0.00 0.00 3.41
3649 3797 4.020218 TCACATGGGAAGTAAGAAGGTCTG 60.020 45.833 0.00 0.00 0.00 3.51
3650 3798 4.168101 TCACATGGGAAGTAAGAAGGTCT 58.832 43.478 0.00 0.00 0.00 3.85
3651 3799 4.553330 TCACATGGGAAGTAAGAAGGTC 57.447 45.455 0.00 0.00 0.00 3.85
3652 3800 4.993705 TTCACATGGGAAGTAAGAAGGT 57.006 40.909 6.21 0.00 0.00 3.50
3653 3801 6.003950 TCTTTTCACATGGGAAGTAAGAAGG 58.996 40.000 18.37 2.21 0.00 3.46
3654 3802 6.150140 CCTCTTTTCACATGGGAAGTAAGAAG 59.850 42.308 20.18 16.00 28.55 2.85
3655 3803 6.003950 CCTCTTTTCACATGGGAAGTAAGAA 58.996 40.000 20.18 8.45 28.55 2.52
3656 3804 5.514834 CCCTCTTTTCACATGGGAAGTAAGA 60.515 44.000 19.14 19.14 40.23 2.10
3657 3805 4.702131 CCCTCTTTTCACATGGGAAGTAAG 59.298 45.833 10.89 12.56 40.23 2.34
3658 3806 4.508405 CCCCTCTTTTCACATGGGAAGTAA 60.508 45.833 10.89 2.51 40.23 2.24
3659 3807 3.010138 CCCCTCTTTTCACATGGGAAGTA 59.990 47.826 10.89 2.57 40.23 2.24
3660 3808 2.225117 CCCCTCTTTTCACATGGGAAGT 60.225 50.000 10.89 0.00 40.23 3.01
3661 3809 2.450476 CCCCTCTTTTCACATGGGAAG 58.550 52.381 10.89 0.00 40.23 3.46
3662 3810 1.077005 CCCCCTCTTTTCACATGGGAA 59.923 52.381 6.21 6.21 40.23 3.97
3663 3811 0.704076 CCCCCTCTTTTCACATGGGA 59.296 55.000 0.00 0.00 40.23 4.37
3664 3812 0.409484 ACCCCCTCTTTTCACATGGG 59.591 55.000 0.00 0.00 37.68 4.00
3665 3813 3.010138 TCTTACCCCCTCTTTTCACATGG 59.990 47.826 0.00 0.00 0.00 3.66
3666 3814 4.301072 TCTTACCCCCTCTTTTCACATG 57.699 45.455 0.00 0.00 0.00 3.21
3667 3815 4.263949 CCTTCTTACCCCCTCTTTTCACAT 60.264 45.833 0.00 0.00 0.00 3.21
3668 3816 3.073946 CCTTCTTACCCCCTCTTTTCACA 59.926 47.826 0.00 0.00 0.00 3.58
3669 3817 3.329814 TCCTTCTTACCCCCTCTTTTCAC 59.670 47.826 0.00 0.00 0.00 3.18
3670 3818 3.587506 CTCCTTCTTACCCCCTCTTTTCA 59.412 47.826 0.00 0.00 0.00 2.69
3671 3819 3.622704 GCTCCTTCTTACCCCCTCTTTTC 60.623 52.174 0.00 0.00 0.00 2.29
3672 3820 2.309162 GCTCCTTCTTACCCCCTCTTTT 59.691 50.000 0.00 0.00 0.00 2.27
3673 3821 1.916874 GCTCCTTCTTACCCCCTCTTT 59.083 52.381 0.00 0.00 0.00 2.52
3674 3822 1.203440 TGCTCCTTCTTACCCCCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
3675 3823 0.417841 TGCTCCTTCTTACCCCCTCT 59.582 55.000 0.00 0.00 0.00 3.69
3676 3824 1.512735 ATGCTCCTTCTTACCCCCTC 58.487 55.000 0.00 0.00 0.00 4.30
3677 3825 2.889522 TATGCTCCTTCTTACCCCCT 57.110 50.000 0.00 0.00 0.00 4.79
3678 3826 2.711547 ACATATGCTCCTTCTTACCCCC 59.288 50.000 1.58 0.00 0.00 5.40
3679 3827 4.439253 AACATATGCTCCTTCTTACCCC 57.561 45.455 1.58 0.00 0.00 4.95
3680 3828 7.875327 TTTTAACATATGCTCCTTCTTACCC 57.125 36.000 1.58 0.00 0.00 3.69
3681 3829 8.568794 GGATTTTAACATATGCTCCTTCTTACC 58.431 37.037 1.58 0.00 0.00 2.85
3682 3830 8.568794 GGGATTTTAACATATGCTCCTTCTTAC 58.431 37.037 1.58 0.00 0.00 2.34
3683 3831 8.278639 TGGGATTTTAACATATGCTCCTTCTTA 58.721 33.333 1.58 0.00 0.00 2.10
3684 3832 7.125391 TGGGATTTTAACATATGCTCCTTCTT 58.875 34.615 1.58 0.00 0.00 2.52
3685 3833 6.672593 TGGGATTTTAACATATGCTCCTTCT 58.327 36.000 1.58 0.00 0.00 2.85
3686 3834 6.959639 TGGGATTTTAACATATGCTCCTTC 57.040 37.500 1.58 0.00 0.00 3.46
3687 3835 7.732222 TTTGGGATTTTAACATATGCTCCTT 57.268 32.000 1.58 0.00 0.00 3.36
3688 3836 7.919385 ATTTGGGATTTTAACATATGCTCCT 57.081 32.000 1.58 0.00 0.00 3.69
3689 3837 8.424133 AGAATTTGGGATTTTAACATATGCTCC 58.576 33.333 1.58 0.15 0.00 4.70
3701 3849 7.765819 GCTGCACTAATTAGAATTTGGGATTTT 59.234 33.333 19.38 0.00 27.93 1.82
3702 3850 7.124750 AGCTGCACTAATTAGAATTTGGGATTT 59.875 33.333 19.38 0.00 27.93 2.17
3703 3851 6.608808 AGCTGCACTAATTAGAATTTGGGATT 59.391 34.615 19.38 0.00 27.93 3.01
3704 3852 6.040166 CAGCTGCACTAATTAGAATTTGGGAT 59.960 38.462 19.38 0.00 27.93 3.85
3705 3853 5.357878 CAGCTGCACTAATTAGAATTTGGGA 59.642 40.000 19.38 2.24 27.93 4.37
3706 3854 5.585390 CAGCTGCACTAATTAGAATTTGGG 58.415 41.667 19.38 3.95 0.00 4.12
3707 3855 5.039333 GCAGCTGCACTAATTAGAATTTGG 58.961 41.667 33.36 4.35 41.59 3.28
3723 3871 0.310854 ACCGTAAAAAGTGCAGCTGC 59.689 50.000 31.89 31.89 42.50 5.25
3724 3872 2.604614 GGAACCGTAAAAAGTGCAGCTG 60.605 50.000 10.11 10.11 0.00 4.24
3725 3873 1.607148 GGAACCGTAAAAAGTGCAGCT 59.393 47.619 0.00 0.00 0.00 4.24
3726 3874 1.662026 CGGAACCGTAAAAAGTGCAGC 60.662 52.381 4.99 0.00 34.35 5.25
3727 3875 1.069500 CCGGAACCGTAAAAAGTGCAG 60.069 52.381 12.23 0.00 37.81 4.41
3728 3876 0.945813 CCGGAACCGTAAAAAGTGCA 59.054 50.000 12.23 0.00 37.81 4.57
3729 3877 1.196127 CTCCGGAACCGTAAAAAGTGC 59.804 52.381 5.23 0.00 37.81 4.40
3730 3878 1.196127 GCTCCGGAACCGTAAAAAGTG 59.804 52.381 5.23 0.00 37.81 3.16
3731 3879 1.202675 TGCTCCGGAACCGTAAAAAGT 60.203 47.619 5.23 0.00 37.81 2.66
3732 3880 1.196127 GTGCTCCGGAACCGTAAAAAG 59.804 52.381 5.23 0.00 37.81 2.27
3733 3881 1.228533 GTGCTCCGGAACCGTAAAAA 58.771 50.000 5.23 0.00 37.81 1.94
3734 3882 0.106335 TGTGCTCCGGAACCGTAAAA 59.894 50.000 5.23 0.00 37.81 1.52
3735 3883 0.600782 GTGTGCTCCGGAACCGTAAA 60.601 55.000 5.23 0.00 37.81 2.01
3736 3884 1.005867 GTGTGCTCCGGAACCGTAA 60.006 57.895 5.23 0.00 37.81 3.18
3737 3885 2.201708 TGTGTGCTCCGGAACCGTA 61.202 57.895 5.23 0.00 37.81 4.02
3738 3886 3.542676 TGTGTGCTCCGGAACCGT 61.543 61.111 5.23 0.00 37.81 4.83
3739 3887 3.041940 GTGTGTGCTCCGGAACCG 61.042 66.667 5.23 6.25 39.44 4.44
3740 3888 2.668550 GGTGTGTGCTCCGGAACC 60.669 66.667 5.23 5.10 0.00 3.62
3741 3889 2.668550 GGGTGTGTGCTCCGGAAC 60.669 66.667 5.23 0.16 0.00 3.62
3742 3890 2.391724 GAAGGGTGTGTGCTCCGGAA 62.392 60.000 5.23 0.00 0.00 4.30
3743 3891 2.847234 AAGGGTGTGTGCTCCGGA 60.847 61.111 2.93 2.93 0.00 5.14
3744 3892 2.358737 GAAGGGTGTGTGCTCCGG 60.359 66.667 0.00 0.00 0.00 5.14
3745 3893 2.358737 GGAAGGGTGTGTGCTCCG 60.359 66.667 0.00 0.00 0.00 4.63
3746 3894 2.034221 GGGAAGGGTGTGTGCTCC 59.966 66.667 0.00 0.00 0.00 4.70
3747 3895 1.302832 CTGGGAAGGGTGTGTGCTC 60.303 63.158 0.00 0.00 0.00 4.26
3748 3896 2.839098 CTGGGAAGGGTGTGTGCT 59.161 61.111 0.00 0.00 0.00 4.40
3749 3897 2.985847 GCTGGGAAGGGTGTGTGC 60.986 66.667 0.00 0.00 0.00 4.57
3750 3898 2.282462 GGCTGGGAAGGGTGTGTG 60.282 66.667 0.00 0.00 0.00 3.82
3751 3899 3.953775 CGGCTGGGAAGGGTGTGT 61.954 66.667 0.00 0.00 0.00 3.72
3752 3900 2.521958 CTACGGCTGGGAAGGGTGTG 62.522 65.000 0.00 0.00 0.00 3.82
3753 3901 2.203877 TACGGCTGGGAAGGGTGT 60.204 61.111 0.00 0.00 0.00 4.16
3754 3902 2.584608 CTACGGCTGGGAAGGGTG 59.415 66.667 0.00 0.00 0.00 4.61
3755 3903 2.687566 CCTACGGCTGGGAAGGGT 60.688 66.667 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.