Multiple sequence alignment - TraesCS3A01G134500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G134500 chr3A 100.000 3821 0 0 1 3821 111823334 111827154 0.000000e+00 7057.0
1 TraesCS3A01G134500 chr3A 77.778 1071 199 29 1111 2166 111961925 111962971 1.170000e-174 623.0
2 TraesCS3A01G134500 chr3A 83.784 74 8 3 3280 3350 377790146 377790218 2.460000e-07 67.6
3 TraesCS3A01G134500 chr3D 93.491 2289 118 18 774 3049 115606225 115608495 0.000000e+00 3373.0
4 TraesCS3A01G134500 chr3D 74.481 674 148 20 1168 1837 116011229 116011882 1.750000e-68 270.0
5 TraesCS3A01G134500 chr3B 93.000 2243 124 18 774 3008 169134699 169136916 0.000000e+00 3241.0
6 TraesCS3A01G134500 chr3B 79.463 521 93 11 28 537 704877211 704876694 1.310000e-94 357.0
7 TraesCS3A01G134500 chr1B 95.203 542 26 0 3280 3821 671481467 671480926 0.000000e+00 857.0
8 TraesCS3A01G134500 chr1B 91.841 527 42 1 3296 3821 16396285 16395759 0.000000e+00 734.0
9 TraesCS3A01G134500 chr1B 90.684 526 49 0 3296 3821 262923727 262924252 0.000000e+00 701.0
10 TraesCS3A01G134500 chr1B 91.071 56 1 3 3280 3332 428051038 428051092 5.290000e-09 73.1
11 TraesCS3A01G134500 chr6A 80.544 992 151 34 1171 2144 99968819 99967852 0.000000e+00 725.0
12 TraesCS3A01G134500 chr5B 79.368 1013 178 25 1171 2166 48860941 48859943 0.000000e+00 684.0
13 TraesCS3A01G134500 chr4B 77.628 1113 210 31 1171 2263 54330858 54329765 1.160000e-179 640.0
14 TraesCS3A01G134500 chr4B 76.460 1147 220 36 1171 2290 54517131 54518254 9.200000e-161 577.0
15 TraesCS3A01G134500 chr4B 79.286 140 29 0 2031 2170 54321659 54321520 8.740000e-17 99.0
16 TraesCS3A01G134500 chr4D 77.961 1030 193 28 1255 2266 37289515 37288502 7.020000e-172 614.0
17 TraesCS3A01G134500 chr4D 81.612 484 69 12 35 506 344123098 344122623 2.150000e-102 383.0
18 TraesCS3A01G134500 chr5D 78.042 1011 191 26 1171 2166 46713277 46714271 3.260000e-170 608.0
19 TraesCS3A01G134500 chr6B 78.090 995 157 37 1171 2149 157864669 157863720 1.190000e-159 573.0
20 TraesCS3A01G134500 chr6B 79.447 579 101 15 28 591 590025897 590026472 9.950000e-106 394.0
21 TraesCS3A01G134500 chr6B 95.556 45 2 0 3277 3321 69552808 69552852 5.290000e-09 73.1
22 TraesCS3A01G134500 chr1D 83.030 495 63 12 28 512 223536340 223536823 2.730000e-116 429.0
23 TraesCS3A01G134500 chr1D 90.000 60 3 3 3279 3336 383445232 383445174 1.470000e-09 75.0
24 TraesCS3A01G134500 chr6D 84.491 432 55 9 29 449 394213148 394213578 2.120000e-112 416.0
25 TraesCS3A01G134500 chr6D 79.447 579 91 17 28 589 80721589 80722156 5.990000e-103 385.0
26 TraesCS3A01G134500 chr7A 80.151 529 91 11 28 543 544068424 544068951 2.150000e-102 383.0
27 TraesCS3A01G134500 chr7A 83.784 74 8 3 3280 3350 112067294 112067222 2.460000e-07 67.6
28 TraesCS3A01G134500 chr1A 79.889 542 86 15 28 552 89598455 89597920 3.600000e-100 375.0
29 TraesCS3A01G134500 chr1A 83.721 86 13 1 3196 3281 530525599 530525515 3.160000e-11 80.5
30 TraesCS3A01G134500 chrUn 80.244 491 83 11 33 512 170199216 170198729 1.310000e-94 357.0
31 TraesCS3A01G134500 chr2A 92.308 52 3 1 3270 3321 394952048 394951998 5.290000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G134500 chr3A 111823334 111827154 3820 False 7057 7057 100.000 1 3821 1 chr3A.!!$F1 3820
1 TraesCS3A01G134500 chr3A 111961925 111962971 1046 False 623 623 77.778 1111 2166 1 chr3A.!!$F2 1055
2 TraesCS3A01G134500 chr3D 115606225 115608495 2270 False 3373 3373 93.491 774 3049 1 chr3D.!!$F1 2275
3 TraesCS3A01G134500 chr3D 116011229 116011882 653 False 270 270 74.481 1168 1837 1 chr3D.!!$F2 669
4 TraesCS3A01G134500 chr3B 169134699 169136916 2217 False 3241 3241 93.000 774 3008 1 chr3B.!!$F1 2234
5 TraesCS3A01G134500 chr3B 704876694 704877211 517 True 357 357 79.463 28 537 1 chr3B.!!$R1 509
6 TraesCS3A01G134500 chr1B 671480926 671481467 541 True 857 857 95.203 3280 3821 1 chr1B.!!$R2 541
7 TraesCS3A01G134500 chr1B 16395759 16396285 526 True 734 734 91.841 3296 3821 1 chr1B.!!$R1 525
8 TraesCS3A01G134500 chr1B 262923727 262924252 525 False 701 701 90.684 3296 3821 1 chr1B.!!$F1 525
9 TraesCS3A01G134500 chr6A 99967852 99968819 967 True 725 725 80.544 1171 2144 1 chr6A.!!$R1 973
10 TraesCS3A01G134500 chr5B 48859943 48860941 998 True 684 684 79.368 1171 2166 1 chr5B.!!$R1 995
11 TraesCS3A01G134500 chr4B 54329765 54330858 1093 True 640 640 77.628 1171 2263 1 chr4B.!!$R2 1092
12 TraesCS3A01G134500 chr4B 54517131 54518254 1123 False 577 577 76.460 1171 2290 1 chr4B.!!$F1 1119
13 TraesCS3A01G134500 chr4D 37288502 37289515 1013 True 614 614 77.961 1255 2266 1 chr4D.!!$R1 1011
14 TraesCS3A01G134500 chr5D 46713277 46714271 994 False 608 608 78.042 1171 2166 1 chr5D.!!$F1 995
15 TraesCS3A01G134500 chr6B 157863720 157864669 949 True 573 573 78.090 1171 2149 1 chr6B.!!$R1 978
16 TraesCS3A01G134500 chr6B 590025897 590026472 575 False 394 394 79.447 28 591 1 chr6B.!!$F2 563
17 TraesCS3A01G134500 chr6D 80721589 80722156 567 False 385 385 79.447 28 589 1 chr6D.!!$F1 561
18 TraesCS3A01G134500 chr7A 544068424 544068951 527 False 383 383 80.151 28 543 1 chr7A.!!$F1 515
19 TraesCS3A01G134500 chr1A 89597920 89598455 535 True 375 375 79.889 28 552 1 chr1A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 570 0.037882 CGCATCTGTGTCCACTGACT 60.038 55.0 8.86 0.0 42.28 3.41 F
951 971 0.041833 TTCCCTCCCTCCACTCTCAG 59.958 60.0 0.00 0.0 0.00 3.35 F
1849 1925 0.238289 CACCAACACGATCAACAGCC 59.762 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2477 2553 0.662374 CGTGTACGAGCCGTTGAACT 60.662 55.0 5.57 0.0 41.54 3.01 R
2721 2800 0.526211 CGTCGGAATGGTCAGAGACA 59.474 55.0 0.00 0.0 33.68 3.41 R
3192 3277 0.039978 TGTGTGCATTTTTACCCGCG 60.040 50.0 0.00 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.269241 GCTTACCAGGAAGCGGCT 59.731 61.111 0.00 0.00 42.26 5.52
20 21 2.109126 GCTTACCAGGAAGCGGCTG 61.109 63.158 1.81 0.00 42.26 4.85
21 22 2.046314 TTACCAGGAAGCGGCTGC 60.046 61.111 10.33 10.33 43.24 5.25
22 23 3.622060 TTACCAGGAAGCGGCTGCC 62.622 63.158 20.03 20.03 44.31 4.85
57 59 1.749634 GGAGGAGAACAACGCTAGCTA 59.250 52.381 13.93 0.00 0.00 3.32
90 92 1.226974 CGCCGACGAATCATCAGGT 60.227 57.895 0.00 0.00 43.93 4.00
99 101 0.986019 AATCATCAGGTGGCCCGGTA 60.986 55.000 0.00 0.00 35.12 4.02
107 109 2.039787 TGGCCCGGTAGGATGACA 59.960 61.111 0.00 0.00 41.02 3.58
119 121 1.965930 GATGACAACAGTGCCGGCA 60.966 57.895 29.03 29.03 0.00 5.69
154 156 3.300765 GACCTCACGTCCACCGGT 61.301 66.667 0.00 0.00 42.24 5.28
155 157 1.973281 GACCTCACGTCCACCGGTA 60.973 63.158 6.87 0.00 42.24 4.02
172 174 0.172803 GTAACGGACAGGTCGCAGAT 59.827 55.000 0.00 0.00 40.67 2.90
191 193 3.645687 AGATTCCTCCAAGGATGAGTAGC 59.354 47.826 0.00 0.00 45.34 3.58
193 195 1.008327 TCCTCCAAGGATGAGTAGCCA 59.992 52.381 0.00 0.00 40.06 4.75
208 210 3.691342 CCAACGGGAGGCGACAGA 61.691 66.667 0.00 0.00 35.59 3.41
227 229 0.478072 AGCCTTGTGTCCCATGTGAA 59.522 50.000 0.00 0.00 0.00 3.18
233 235 0.536460 GTGTCCCATGTGAACCGGTT 60.536 55.000 22.50 22.50 0.00 4.44
261 263 1.905687 CGTGTTCTACTCTTTCTCGCG 59.094 52.381 0.00 0.00 0.00 5.87
305 307 0.872021 GTCTTATCGCCGGTGCTCAG 60.872 60.000 11.05 1.26 34.43 3.35
309 311 1.725557 TATCGCCGGTGCTCAGAGAC 61.726 60.000 11.05 0.00 34.43 3.36
311 313 4.803426 GCCGGTGCTCAGAGACGG 62.803 72.222 18.94 18.94 46.78 4.79
312 314 4.803426 CCGGTGCTCAGAGACGGC 62.803 72.222 13.53 0.00 37.93 5.68
325 330 1.043116 AGACGGCGATGGAGGATGAA 61.043 55.000 16.62 0.00 0.00 2.57
431 450 8.731275 AATCCGTCATGTTTGTATGAAATCTA 57.269 30.769 0.00 0.00 38.69 1.98
481 501 8.754230 TGTTTGCATGAATTTCATTCGATTTA 57.246 26.923 9.19 0.00 42.15 1.40
518 538 7.503521 TTTAAATGTATGCGGCTATGATTGA 57.496 32.000 0.00 0.00 0.00 2.57
520 540 5.362556 AATGTATGCGGCTATGATTGAAC 57.637 39.130 0.00 0.00 0.00 3.18
524 544 1.941812 CGGCTATGATTGAACGGCC 59.058 57.895 0.00 0.00 36.60 6.13
525 545 1.941812 GGCTATGATTGAACGGCCG 59.058 57.895 26.86 26.86 0.00 6.13
527 547 1.160329 GCTATGATTGAACGGCCGCT 61.160 55.000 28.58 15.08 0.00 5.52
529 549 1.670811 CTATGATTGAACGGCCGCTTT 59.329 47.619 28.58 13.95 0.00 3.51
538 558 3.880846 GGCCGCTTTCCGCATCTG 61.881 66.667 0.00 0.00 39.08 2.90
539 559 3.127533 GCCGCTTTCCGCATCTGT 61.128 61.111 0.00 0.00 39.08 3.41
540 560 2.787249 CCGCTTTCCGCATCTGTG 59.213 61.111 0.00 0.00 39.08 3.66
541 561 2.034879 CCGCTTTCCGCATCTGTGT 61.035 57.895 0.00 0.00 39.08 3.72
542 562 1.421485 CGCTTTCCGCATCTGTGTC 59.579 57.895 0.00 0.00 39.08 3.67
543 563 1.796796 GCTTTCCGCATCTGTGTCC 59.203 57.895 0.00 0.00 38.92 4.02
544 564 0.955428 GCTTTCCGCATCTGTGTCCA 60.955 55.000 0.00 0.00 38.92 4.02
545 565 0.798776 CTTTCCGCATCTGTGTCCAC 59.201 55.000 0.00 0.00 0.00 4.02
546 566 0.396435 TTTCCGCATCTGTGTCCACT 59.604 50.000 0.00 0.00 0.00 4.00
547 567 0.320683 TTCCGCATCTGTGTCCACTG 60.321 55.000 0.00 0.00 0.00 3.66
548 568 1.184970 TCCGCATCTGTGTCCACTGA 61.185 55.000 9.07 9.07 42.16 3.41
549 569 1.016130 CCGCATCTGTGTCCACTGAC 61.016 60.000 8.86 0.00 41.07 3.51
550 570 0.037882 CGCATCTGTGTCCACTGACT 60.038 55.000 8.86 0.00 42.28 3.41
551 571 1.436600 GCATCTGTGTCCACTGACTG 58.563 55.000 8.86 9.49 42.28 3.51
552 572 1.943046 GCATCTGTGTCCACTGACTGG 60.943 57.143 8.86 4.35 42.28 4.00
553 573 0.322975 ATCTGTGTCCACTGACTGGC 59.677 55.000 8.86 0.00 42.28 4.85
554 574 1.302033 CTGTGTCCACTGACTGGCC 60.302 63.158 0.00 0.00 42.28 5.36
555 575 2.032681 GTGTCCACTGACTGGCCC 59.967 66.667 0.00 0.00 42.28 5.80
556 576 3.249189 TGTCCACTGACTGGCCCC 61.249 66.667 0.00 0.00 42.28 5.80
557 577 4.394712 GTCCACTGACTGGCCCCG 62.395 72.222 0.00 0.00 40.39 5.73
558 578 4.954118 TCCACTGACTGGCCCCGT 62.954 66.667 0.00 0.00 40.39 5.28
559 579 4.704833 CCACTGACTGGCCCCGTG 62.705 72.222 0.00 0.00 31.36 4.94
560 580 3.941188 CACTGACTGGCCCCGTGT 61.941 66.667 0.00 0.00 0.00 4.49
561 581 3.626924 ACTGACTGGCCCCGTGTC 61.627 66.667 0.00 4.26 0.00 3.67
562 582 4.394712 CTGACTGGCCCCGTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
564 584 3.717294 GACTGGCCCCGTGTCCAT 61.717 66.667 0.00 0.00 0.00 3.41
565 585 3.976701 GACTGGCCCCGTGTCCATG 62.977 68.421 0.00 0.00 0.00 3.66
566 586 3.716195 CTGGCCCCGTGTCCATGA 61.716 66.667 0.00 0.00 0.00 3.07
567 587 3.253061 TGGCCCCGTGTCCATGAA 61.253 61.111 0.00 0.00 0.00 2.57
568 588 2.750237 GGCCCCGTGTCCATGAAC 60.750 66.667 0.00 0.00 0.00 3.18
569 589 3.124921 GCCCCGTGTCCATGAACG 61.125 66.667 0.00 1.13 39.48 3.95
576 596 2.135139 CGTGTCCATGAACGGATATGG 58.865 52.381 0.00 7.52 44.15 2.74
581 601 3.769739 CCATGAACGGATATGGAAGGA 57.230 47.619 7.98 0.00 45.32 3.36
582 602 4.085357 CCATGAACGGATATGGAAGGAA 57.915 45.455 7.98 0.00 45.32 3.36
583 603 4.460263 CCATGAACGGATATGGAAGGAAA 58.540 43.478 7.98 0.00 45.32 3.13
584 604 5.072741 CCATGAACGGATATGGAAGGAAAT 58.927 41.667 7.98 0.00 45.32 2.17
585 605 5.536161 CCATGAACGGATATGGAAGGAAATT 59.464 40.000 7.98 0.00 45.32 1.82
586 606 6.040842 CCATGAACGGATATGGAAGGAAATTT 59.959 38.462 7.98 0.00 45.32 1.82
587 607 6.449635 TGAACGGATATGGAAGGAAATTTG 57.550 37.500 0.00 0.00 0.00 2.32
588 608 4.918810 ACGGATATGGAAGGAAATTTGC 57.081 40.909 0.68 0.68 0.00 3.68
589 609 3.315191 ACGGATATGGAAGGAAATTTGCG 59.685 43.478 3.87 0.00 0.00 4.85
590 610 3.304659 CGGATATGGAAGGAAATTTGCGG 60.305 47.826 3.87 0.00 0.00 5.69
591 611 3.005791 GGATATGGAAGGAAATTTGCGGG 59.994 47.826 3.87 0.00 0.00 6.13
592 612 2.230130 ATGGAAGGAAATTTGCGGGA 57.770 45.000 3.87 0.00 0.00 5.14
593 613 1.253100 TGGAAGGAAATTTGCGGGAC 58.747 50.000 3.87 0.00 0.00 4.46
606 626 2.029666 GGGACGCCATCGGAGATG 59.970 66.667 3.21 3.21 45.12 2.90
607 627 2.663188 GGACGCCATCGGAGATGC 60.663 66.667 4.60 0.67 45.12 3.91
608 628 2.663188 GACGCCATCGGAGATGCC 60.663 66.667 4.60 0.00 45.12 4.40
609 629 3.445518 GACGCCATCGGAGATGCCA 62.446 63.158 4.60 0.00 45.12 4.92
610 630 2.031616 CGCCATCGGAGATGCCAT 59.968 61.111 4.60 0.00 45.12 4.40
611 631 1.598962 CGCCATCGGAGATGCCATT 60.599 57.895 4.60 0.00 45.12 3.16
612 632 0.320683 CGCCATCGGAGATGCCATTA 60.321 55.000 4.60 0.00 45.12 1.90
613 633 1.676916 CGCCATCGGAGATGCCATTAT 60.677 52.381 4.60 0.00 45.12 1.28
614 634 2.012673 GCCATCGGAGATGCCATTATC 58.987 52.381 4.60 0.00 45.12 1.75
615 635 2.636830 CCATCGGAGATGCCATTATCC 58.363 52.381 4.60 0.87 45.12 2.59
616 636 2.026915 CCATCGGAGATGCCATTATCCA 60.027 50.000 9.69 0.00 45.12 3.41
617 637 3.268330 CATCGGAGATGCCATTATCCAG 58.732 50.000 9.69 4.10 45.12 3.86
618 638 2.329267 TCGGAGATGCCATTATCCAGT 58.671 47.619 9.69 0.00 35.94 4.00
619 639 2.705658 TCGGAGATGCCATTATCCAGTT 59.294 45.455 9.69 0.00 35.94 3.16
620 640 2.810274 CGGAGATGCCATTATCCAGTTG 59.190 50.000 9.69 0.00 35.94 3.16
621 641 3.745480 CGGAGATGCCATTATCCAGTTGT 60.745 47.826 9.69 0.00 35.94 3.32
622 642 3.817647 GGAGATGCCATTATCCAGTTGTC 59.182 47.826 5.30 0.00 36.34 3.18
623 643 3.470709 AGATGCCATTATCCAGTTGTCG 58.529 45.455 0.00 0.00 0.00 4.35
624 644 3.134623 AGATGCCATTATCCAGTTGTCGA 59.865 43.478 0.00 0.00 0.00 4.20
625 645 3.342377 TGCCATTATCCAGTTGTCGAA 57.658 42.857 0.00 0.00 0.00 3.71
626 646 3.006940 TGCCATTATCCAGTTGTCGAAC 58.993 45.455 0.00 0.00 0.00 3.95
627 647 3.006940 GCCATTATCCAGTTGTCGAACA 58.993 45.455 0.00 0.00 34.17 3.18
628 648 3.063997 GCCATTATCCAGTTGTCGAACAG 59.936 47.826 0.00 0.00 34.17 3.16
629 649 4.253685 CCATTATCCAGTTGTCGAACAGT 58.746 43.478 0.00 0.00 34.17 3.55
630 650 5.416083 CCATTATCCAGTTGTCGAACAGTA 58.584 41.667 0.00 0.00 34.17 2.74
631 651 5.872617 CCATTATCCAGTTGTCGAACAGTAA 59.127 40.000 0.00 0.00 34.17 2.24
632 652 6.538742 CCATTATCCAGTTGTCGAACAGTAAT 59.461 38.462 0.00 0.00 34.17 1.89
633 653 7.709182 CCATTATCCAGTTGTCGAACAGTAATA 59.291 37.037 0.00 0.00 34.17 0.98
634 654 8.540492 CATTATCCAGTTGTCGAACAGTAATAC 58.460 37.037 0.00 0.00 34.17 1.89
635 655 4.478699 TCCAGTTGTCGAACAGTAATACG 58.521 43.478 0.00 0.00 34.17 3.06
636 656 4.022935 TCCAGTTGTCGAACAGTAATACGT 60.023 41.667 0.00 0.00 34.17 3.57
637 657 5.181056 TCCAGTTGTCGAACAGTAATACGTA 59.819 40.000 0.00 0.00 34.17 3.57
638 658 5.510674 CCAGTTGTCGAACAGTAATACGTAG 59.489 44.000 0.08 0.00 34.17 3.51
639 659 6.309436 CAGTTGTCGAACAGTAATACGTAGA 58.691 40.000 0.08 0.00 34.17 2.59
640 660 6.798476 CAGTTGTCGAACAGTAATACGTAGAA 59.202 38.462 0.08 0.00 34.17 2.10
641 661 7.007188 CAGTTGTCGAACAGTAATACGTAGAAG 59.993 40.741 0.08 0.00 34.17 2.85
642 662 6.486253 TGTCGAACAGTAATACGTAGAAGT 57.514 37.500 0.08 0.00 0.00 3.01
643 663 7.595311 TGTCGAACAGTAATACGTAGAAGTA 57.405 36.000 0.08 0.00 0.00 2.24
644 664 8.201554 TGTCGAACAGTAATACGTAGAAGTAT 57.798 34.615 0.08 0.00 38.83 2.12
645 665 9.313118 TGTCGAACAGTAATACGTAGAAGTATA 57.687 33.333 0.08 0.00 36.39 1.47
646 666 9.790433 GTCGAACAGTAATACGTAGAAGTATAG 57.210 37.037 0.08 0.00 36.39 1.31
647 667 9.750125 TCGAACAGTAATACGTAGAAGTATAGA 57.250 33.333 0.08 0.00 36.39 1.98
657 677 7.424227 ACGTAGAAGTATAGAATCCTCTTCG 57.576 40.000 0.00 0.00 39.28 3.79
658 678 6.991531 ACGTAGAAGTATAGAATCCTCTTCGT 59.008 38.462 0.00 0.00 39.28 3.85
659 679 7.041916 ACGTAGAAGTATAGAATCCTCTTCGTG 60.042 40.741 0.00 0.00 39.28 4.35
660 680 6.642707 AGAAGTATAGAATCCTCTTCGTGG 57.357 41.667 0.00 0.00 39.28 4.94
661 681 6.130569 AGAAGTATAGAATCCTCTTCGTGGT 58.869 40.000 0.00 0.00 39.28 4.16
662 682 5.776173 AGTATAGAATCCTCTTCGTGGTG 57.224 43.478 0.00 0.00 32.70 4.17
663 683 4.585162 AGTATAGAATCCTCTTCGTGGTGG 59.415 45.833 0.00 0.00 32.70 4.61
664 684 1.938585 AGAATCCTCTTCGTGGTGGA 58.061 50.000 4.37 4.37 0.00 4.02
665 685 2.257207 AGAATCCTCTTCGTGGTGGAA 58.743 47.619 5.61 0.00 31.87 3.53
666 686 2.028020 AGAATCCTCTTCGTGGTGGAAC 60.028 50.000 5.61 4.34 31.87 3.62
667 687 1.645710 ATCCTCTTCGTGGTGGAACT 58.354 50.000 5.61 0.00 36.74 3.01
668 688 2.297698 TCCTCTTCGTGGTGGAACTA 57.702 50.000 0.00 0.00 36.74 2.24
669 689 2.600790 TCCTCTTCGTGGTGGAACTAA 58.399 47.619 0.00 0.00 36.74 2.24
670 690 3.170717 TCCTCTTCGTGGTGGAACTAAT 58.829 45.455 0.00 0.00 36.74 1.73
671 691 3.581332 TCCTCTTCGTGGTGGAACTAATT 59.419 43.478 0.00 0.00 36.74 1.40
672 692 4.041198 TCCTCTTCGTGGTGGAACTAATTT 59.959 41.667 0.00 0.00 36.74 1.82
673 693 4.392138 CCTCTTCGTGGTGGAACTAATTTC 59.608 45.833 0.00 0.00 36.74 2.17
674 694 3.991773 TCTTCGTGGTGGAACTAATTTCG 59.008 43.478 0.00 0.00 36.74 3.46
675 695 3.663995 TCGTGGTGGAACTAATTTCGA 57.336 42.857 0.00 0.00 36.74 3.71
676 696 3.992643 TCGTGGTGGAACTAATTTCGAA 58.007 40.909 0.00 0.00 36.74 3.71
677 697 4.571919 TCGTGGTGGAACTAATTTCGAAT 58.428 39.130 0.00 0.00 36.74 3.34
678 698 4.998672 TCGTGGTGGAACTAATTTCGAATT 59.001 37.500 0.00 0.00 36.74 2.17
679 699 5.470777 TCGTGGTGGAACTAATTTCGAATTT 59.529 36.000 9.94 9.94 36.74 1.82
680 700 6.649973 TCGTGGTGGAACTAATTTCGAATTTA 59.350 34.615 0.00 5.50 36.74 1.40
681 701 6.739550 CGTGGTGGAACTAATTTCGAATTTAC 59.260 38.462 0.00 0.00 36.74 2.01
682 702 7.360607 CGTGGTGGAACTAATTTCGAATTTACT 60.361 37.037 0.00 0.00 36.74 2.24
683 703 8.294577 GTGGTGGAACTAATTTCGAATTTACTT 58.705 33.333 0.00 1.92 36.74 2.24
684 704 8.852135 TGGTGGAACTAATTTCGAATTTACTTT 58.148 29.630 0.00 0.74 36.74 2.66
685 705 9.124807 GGTGGAACTAATTTCGAATTTACTTTG 57.875 33.333 0.00 0.00 36.74 2.77
686 706 9.887406 GTGGAACTAATTTCGAATTTACTTTGA 57.113 29.630 0.00 0.00 34.67 2.69
687 707 9.887406 TGGAACTAATTTCGAATTTACTTTGAC 57.113 29.630 0.00 0.00 34.67 3.18
688 708 9.338291 GGAACTAATTTCGAATTTACTTTGACC 57.662 33.333 0.00 1.83 34.67 4.02
690 710 9.893305 AACTAATTTCGAATTTACTTTGACCTG 57.107 29.630 0.00 0.00 0.00 4.00
691 711 8.021396 ACTAATTTCGAATTTACTTTGACCTGC 58.979 33.333 0.00 0.00 0.00 4.85
692 712 4.759516 TTCGAATTTACTTTGACCTGCC 57.240 40.909 0.00 0.00 0.00 4.85
693 713 3.745799 TCGAATTTACTTTGACCTGCCA 58.254 40.909 0.00 0.00 0.00 4.92
694 714 4.138290 TCGAATTTACTTTGACCTGCCAA 58.862 39.130 0.00 0.00 0.00 4.52
695 715 4.580995 TCGAATTTACTTTGACCTGCCAAA 59.419 37.500 0.00 0.00 35.09 3.28
699 719 3.879912 CTTTGACCTGCCAAAGCTG 57.120 52.632 0.00 0.00 44.15 4.24
713 733 7.494922 TGCCAAAGCTGGTATATCTATATCA 57.505 36.000 0.00 0.00 45.53 2.15
714 734 7.917003 TGCCAAAGCTGGTATATCTATATCAA 58.083 34.615 0.00 0.00 45.53 2.57
715 735 8.043113 TGCCAAAGCTGGTATATCTATATCAAG 58.957 37.037 0.00 0.00 45.53 3.02
716 736 7.497249 GCCAAAGCTGGTATATCTATATCAAGG 59.503 40.741 0.00 0.00 45.53 3.61
717 737 8.543774 CCAAAGCTGGTATATCTATATCAAGGT 58.456 37.037 0.00 0.00 38.00 3.50
735 755 5.869649 AAGGTAAACTTGCAATCCAAACT 57.130 34.783 0.00 0.00 38.21 2.66
736 756 6.969993 AAGGTAAACTTGCAATCCAAACTA 57.030 33.333 0.00 0.00 38.21 2.24
737 757 6.575162 AGGTAAACTTGCAATCCAAACTAG 57.425 37.500 0.00 0.00 31.94 2.57
738 758 6.303839 AGGTAAACTTGCAATCCAAACTAGA 58.696 36.000 0.00 0.00 31.94 2.43
739 759 6.948309 AGGTAAACTTGCAATCCAAACTAGAT 59.052 34.615 0.00 0.00 31.94 1.98
740 760 7.121315 AGGTAAACTTGCAATCCAAACTAGATC 59.879 37.037 0.00 0.00 31.94 2.75
741 761 6.899393 AAACTTGCAATCCAAACTAGATCA 57.101 33.333 0.00 0.00 31.94 2.92
742 762 7.472334 AAACTTGCAATCCAAACTAGATCAT 57.528 32.000 0.00 0.00 31.94 2.45
743 763 7.472334 AACTTGCAATCCAAACTAGATCATT 57.528 32.000 0.00 0.00 31.94 2.57
744 764 7.472334 ACTTGCAATCCAAACTAGATCATTT 57.528 32.000 0.00 0.00 31.94 2.32
745 765 8.579850 ACTTGCAATCCAAACTAGATCATTTA 57.420 30.769 0.00 0.00 31.94 1.40
746 766 8.680903 ACTTGCAATCCAAACTAGATCATTTAG 58.319 33.333 0.00 0.00 31.94 1.85
747 767 8.806429 TTGCAATCCAAACTAGATCATTTAGA 57.194 30.769 0.00 0.00 0.00 2.10
748 768 8.985315 TGCAATCCAAACTAGATCATTTAGAT 57.015 30.769 0.00 0.00 40.48 1.98
761 781 8.608844 AGATCATTTAGATAAAAGTAAGCCCG 57.391 34.615 0.00 0.00 37.00 6.13
762 782 7.661847 AGATCATTTAGATAAAAGTAAGCCCGG 59.338 37.037 0.00 0.00 37.00 5.73
763 783 5.529800 TCATTTAGATAAAAGTAAGCCCGGC 59.470 40.000 0.00 0.00 0.00 6.13
764 784 2.343484 AGATAAAAGTAAGCCCGGCC 57.657 50.000 5.55 0.00 0.00 6.13
765 785 0.942252 GATAAAAGTAAGCCCGGCCG 59.058 55.000 21.04 21.04 0.00 6.13
766 786 0.464916 ATAAAAGTAAGCCCGGCCGG 60.465 55.000 37.99 37.99 0.00 6.13
767 787 1.551908 TAAAAGTAAGCCCGGCCGGA 61.552 55.000 45.44 23.74 37.50 5.14
768 788 3.617143 AAAGTAAGCCCGGCCGGAC 62.617 63.158 45.44 35.84 37.50 4.79
776 796 2.905880 CCGGCCGGACGAGTAGAT 60.906 66.667 41.82 0.00 37.50 1.98
777 797 2.638154 CGGCCGGACGAGTAGATC 59.362 66.667 30.37 0.00 35.47 2.75
778 798 2.184830 CGGCCGGACGAGTAGATCA 61.185 63.158 30.37 0.00 35.47 2.92
779 799 1.516365 CGGCCGGACGAGTAGATCAT 61.516 60.000 30.37 0.00 35.47 2.45
780 800 0.674534 GGCCGGACGAGTAGATCATT 59.325 55.000 5.05 0.00 0.00 2.57
785 805 4.621991 CCGGACGAGTAGATCATTTCATT 58.378 43.478 0.00 0.00 0.00 2.57
823 843 2.179517 CGATCGATCGGGCTAGCC 59.820 66.667 34.54 26.55 45.93 3.93
838 858 1.213013 AGCCGTCGCTGTACTCAAG 59.787 57.895 0.00 0.00 46.19 3.02
879 899 6.332635 TGGAGGGAATAAGATCATTACATGGT 59.667 38.462 0.00 0.00 0.00 3.55
924 944 5.133830 ACTTCCCTTCTACTCTTCCCAAAAA 59.866 40.000 0.00 0.00 0.00 1.94
928 948 7.761608 TCCCTTCTACTCTTCCCAAAAATTTA 58.238 34.615 0.00 0.00 0.00 1.40
951 971 0.041833 TTCCCTCCCTCCACTCTCAG 59.958 60.000 0.00 0.00 0.00 3.35
968 988 6.376581 CACTCTCAGCCTTTTAAATTCTCCAT 59.623 38.462 0.00 0.00 0.00 3.41
969 989 6.601217 ACTCTCAGCCTTTTAAATTCTCCATC 59.399 38.462 0.00 0.00 0.00 3.51
970 990 5.888161 TCTCAGCCTTTTAAATTCTCCATCC 59.112 40.000 0.00 0.00 0.00 3.51
971 991 5.579047 TCAGCCTTTTAAATTCTCCATCCA 58.421 37.500 0.00 0.00 0.00 3.41
972 992 5.418840 TCAGCCTTTTAAATTCTCCATCCAC 59.581 40.000 0.00 0.00 0.00 4.02
973 993 4.399303 AGCCTTTTAAATTCTCCATCCACG 59.601 41.667 0.00 0.00 0.00 4.94
974 994 4.398044 GCCTTTTAAATTCTCCATCCACGA 59.602 41.667 0.00 0.00 0.00 4.35
1016 1036 0.906282 TGCATGCCTCTCCACTCTCA 60.906 55.000 16.68 0.00 0.00 3.27
1128 1151 2.477176 CCGTCTCTCAGCCTCCGAG 61.477 68.421 0.00 0.00 0.00 4.63
1347 1393 2.125512 GGACACGCCTCGCTGATT 60.126 61.111 0.00 0.00 0.00 2.57
1543 1593 2.936032 GCAACCCCTCCACCCTCT 60.936 66.667 0.00 0.00 0.00 3.69
1685 1751 3.822192 CATCGTCCCCGTCTCGCA 61.822 66.667 0.00 0.00 35.01 5.10
1755 1821 4.070552 GTCGGGTCAGCGAGCCTT 62.071 66.667 19.49 0.00 46.76 4.35
1843 1913 1.964933 TCTGGTACACCAACACGATCA 59.035 47.619 2.14 0.00 46.97 2.92
1844 1914 2.365941 TCTGGTACACCAACACGATCAA 59.634 45.455 2.14 0.00 46.97 2.57
1849 1925 0.238289 CACCAACACGATCAACAGCC 59.762 55.000 0.00 0.00 0.00 4.85
1982 2058 2.107141 GGGGATCGGCTCGTTCAG 59.893 66.667 7.60 0.00 0.00 3.02
2388 2464 2.793946 GAAGCGTACTCCGGCGTA 59.206 61.111 6.01 0.00 36.94 4.42
2396 2472 1.638388 TACTCCGGCGTACACGTCAG 61.638 60.000 6.01 0.00 45.47 3.51
2426 2502 1.154205 GGCATCGCATACTCGCAAGT 61.154 55.000 0.00 0.00 39.66 3.16
2505 2581 3.678717 CTCGTACACGGTGGCGAGG 62.679 68.421 31.17 20.50 40.54 4.63
2601 2680 2.514592 CAGGAATGCGCGGTGGAT 60.515 61.111 8.83 0.00 0.00 3.41
2616 2695 0.980423 TGGATGTGGACATGGACGAA 59.020 50.000 0.00 0.00 36.57 3.85
2721 2800 1.386525 CCAGCAGCGGTTATGGCATT 61.387 55.000 4.78 0.00 0.00 3.56
2727 2806 1.210478 AGCGGTTATGGCATTGTCTCT 59.790 47.619 4.78 0.00 0.00 3.10
2733 2812 4.202441 GTTATGGCATTGTCTCTGACCAT 58.798 43.478 4.78 0.00 40.81 3.55
2764 2843 1.440938 TTGCGTGAAGGGGTCGTTTG 61.441 55.000 0.00 0.00 0.00 2.93
2765 2844 1.890510 GCGTGAAGGGGTCGTTTGT 60.891 57.895 0.00 0.00 0.00 2.83
2774 2853 2.315386 GGTCGTTTGTCTCCGGTGC 61.315 63.158 0.00 0.00 0.00 5.01
2813 2893 4.946266 TTTGGCGCGACGGACGAA 62.946 61.111 12.10 0.00 45.77 3.85
2833 2913 2.106566 ACTCGTGAGAAGCTGATCCAT 58.893 47.619 3.44 0.00 41.32 3.41
2836 2916 2.497273 TCGTGAGAAGCTGATCCATTGA 59.503 45.455 0.00 0.00 37.03 2.57
2839 2919 4.706035 GTGAGAAGCTGATCCATTGATCT 58.294 43.478 8.16 0.00 46.34 2.75
2843 2923 6.126968 TGAGAAGCTGATCCATTGATCTGTTA 60.127 38.462 13.11 0.00 46.34 2.41
2856 2936 6.561737 TTGATCTGTTAGACTATCCTAGCG 57.438 41.667 0.00 0.00 0.00 4.26
2857 2937 5.622180 TGATCTGTTAGACTATCCTAGCGT 58.378 41.667 0.00 0.00 0.00 5.07
2858 2938 5.470437 TGATCTGTTAGACTATCCTAGCGTG 59.530 44.000 0.00 0.00 0.00 5.34
2859 2939 5.032327 TCTGTTAGACTATCCTAGCGTGA 57.968 43.478 0.00 0.00 0.00 4.35
2860 2940 5.622180 TCTGTTAGACTATCCTAGCGTGAT 58.378 41.667 0.00 0.00 0.00 3.06
2861 2941 6.766429 TCTGTTAGACTATCCTAGCGTGATA 58.234 40.000 0.00 0.00 0.00 2.15
2873 2953 6.046593 TCCTAGCGTGATAGTAAAACAATGG 58.953 40.000 0.00 0.00 0.00 3.16
2877 2957 5.048364 AGCGTGATAGTAAAACAATGGCAAA 60.048 36.000 0.00 0.00 0.00 3.68
2878 2958 5.804979 GCGTGATAGTAAAACAATGGCAAAT 59.195 36.000 0.00 0.00 0.00 2.32
2879 2959 6.237542 GCGTGATAGTAAAACAATGGCAAATG 60.238 38.462 0.00 0.00 0.00 2.32
2880 2960 6.806249 CGTGATAGTAAAACAATGGCAAATGT 59.194 34.615 3.70 3.70 0.00 2.71
2881 2961 7.201342 CGTGATAGTAAAACAATGGCAAATGTG 60.201 37.037 9.66 0.38 0.00 3.21
2882 2962 7.812191 GTGATAGTAAAACAATGGCAAATGTGA 59.188 33.333 9.66 0.00 0.00 3.58
2885 2965 4.752661 AAAACAATGGCAAATGTGATGC 57.247 36.364 9.66 0.00 43.08 3.91
2886 2966 3.404224 AACAATGGCAAATGTGATGCA 57.596 38.095 9.66 0.00 45.60 3.96
2889 2969 0.177141 ATGGCAAATGTGATGCAGCC 59.823 50.000 0.00 0.08 45.60 4.85
2903 2983 3.447918 TGCAGCCTACTTTATACGACC 57.552 47.619 0.00 0.00 0.00 4.79
2908 2988 3.885297 AGCCTACTTTATACGACCGCTAA 59.115 43.478 0.00 0.00 0.00 3.09
2909 2989 4.339247 AGCCTACTTTATACGACCGCTAAA 59.661 41.667 0.00 0.00 0.00 1.85
2910 2990 4.442403 GCCTACTTTATACGACCGCTAAAC 59.558 45.833 0.00 0.00 0.00 2.01
2911 2991 5.581605 CCTACTTTATACGACCGCTAAACA 58.418 41.667 0.00 0.00 0.00 2.83
2912 2992 6.035843 CCTACTTTATACGACCGCTAAACAA 58.964 40.000 0.00 0.00 0.00 2.83
2913 2993 6.197842 CCTACTTTATACGACCGCTAAACAAG 59.802 42.308 0.00 0.00 0.00 3.16
2914 2994 5.473039 ACTTTATACGACCGCTAAACAAGT 58.527 37.500 0.00 0.00 0.00 3.16
2915 2995 6.620678 ACTTTATACGACCGCTAAACAAGTA 58.379 36.000 0.00 0.00 0.00 2.24
2947 3027 8.932945 ATCAGAAAGAAAAACTTCAAAAGGAC 57.067 30.769 0.00 0.00 37.93 3.85
2964 3044 5.582689 AAGGACAAACAGAAAGAAGTTGG 57.417 39.130 0.00 0.00 0.00 3.77
3008 3089 5.608676 ATGAGATGCGTCATCATGATTTC 57.391 39.130 5.16 1.19 42.72 2.17
3009 3090 4.444536 TGAGATGCGTCATCATGATTTCA 58.555 39.130 5.16 10.81 42.72 2.69
3016 3097 4.025896 GCGTCATCATGATTTCACTCTCTG 60.026 45.833 5.16 0.00 0.00 3.35
3018 3099 5.459434 CGTCATCATGATTTCACTCTCTGAG 59.541 44.000 5.16 0.00 35.52 3.35
3020 3101 7.211573 GTCATCATGATTTCACTCTCTGAGAT 58.788 38.462 5.16 0.00 33.32 2.75
3028 3109 2.182827 CACTCTCTGAGATTGGGACCA 58.817 52.381 15.13 0.00 33.32 4.02
3036 3121 2.378208 TGAGATTGGGACCAATGGAACA 59.622 45.455 20.53 11.60 45.50 3.18
3050 3135 3.314307 TGGAACAATGGTTGTACCCAA 57.686 42.857 11.80 0.00 44.59 4.12
3051 3136 3.850752 TGGAACAATGGTTGTACCCAAT 58.149 40.909 11.80 0.00 44.59 3.16
3052 3137 3.576118 TGGAACAATGGTTGTACCCAATG 59.424 43.478 11.80 5.05 44.59 2.82
3053 3138 3.056179 GGAACAATGGTTGTACCCAATGG 60.056 47.826 10.02 0.00 44.59 3.16
3054 3139 1.899142 ACAATGGTTGTACCCAATGGC 59.101 47.619 10.02 0.00 43.27 4.40
3055 3140 1.898472 CAATGGTTGTACCCAATGGCA 59.102 47.619 0.00 0.00 37.50 4.92
3056 3141 2.500910 CAATGGTTGTACCCAATGGCAT 59.499 45.455 0.00 0.00 37.50 4.40
3057 3142 1.846007 TGGTTGTACCCAATGGCATC 58.154 50.000 0.00 0.00 37.50 3.91
3058 3143 1.111277 GGTTGTACCCAATGGCATCC 58.889 55.000 0.00 0.00 32.11 3.51
3059 3144 0.738389 GTTGTACCCAATGGCATCCG 59.262 55.000 0.00 0.00 32.11 4.18
3060 3145 0.329931 TTGTACCCAATGGCATCCGT 59.670 50.000 0.00 0.00 33.59 4.69
3061 3146 0.329931 TGTACCCAATGGCATCCGTT 59.670 50.000 0.00 0.00 32.22 4.44
3062 3147 0.738389 GTACCCAATGGCATCCGTTG 59.262 55.000 0.00 10.12 46.70 4.10
3065 3150 4.016838 CAATGGCATCCGTTGGGT 57.983 55.556 0.00 0.00 44.29 4.51
3066 3151 2.275880 CAATGGCATCCGTTGGGTT 58.724 52.632 0.00 0.00 44.29 4.11
3067 3152 0.607620 CAATGGCATCCGTTGGGTTT 59.392 50.000 0.00 0.00 44.29 3.27
3068 3153 0.607620 AATGGCATCCGTTGGGTTTG 59.392 50.000 0.00 0.00 30.69 2.93
3069 3154 1.257055 ATGGCATCCGTTGGGTTTGG 61.257 55.000 0.00 0.00 33.83 3.28
3070 3155 2.645192 GGCATCCGTTGGGTTTGGG 61.645 63.158 0.00 0.00 33.83 4.12
3071 3156 1.605165 GCATCCGTTGGGTTTGGGA 60.605 57.895 0.00 0.00 33.83 4.37
3072 3157 1.595093 GCATCCGTTGGGTTTGGGAG 61.595 60.000 0.00 0.00 33.83 4.30
3073 3158 0.965363 CATCCGTTGGGTTTGGGAGG 60.965 60.000 0.00 0.00 33.83 4.30
3074 3159 2.150014 ATCCGTTGGGTTTGGGAGGG 62.150 60.000 0.00 0.00 33.83 4.30
3075 3160 2.282887 CGTTGGGTTTGGGAGGGG 60.283 66.667 0.00 0.00 0.00 4.79
3076 3161 2.940124 GTTGGGTTTGGGAGGGGT 59.060 61.111 0.00 0.00 0.00 4.95
3077 3162 1.533033 GTTGGGTTTGGGAGGGGTG 60.533 63.158 0.00 0.00 0.00 4.61
3078 3163 2.784654 TTGGGTTTGGGAGGGGTGG 61.785 63.158 0.00 0.00 0.00 4.61
3079 3164 2.861974 GGGTTTGGGAGGGGTGGA 60.862 66.667 0.00 0.00 0.00 4.02
3080 3165 2.763902 GGTTTGGGAGGGGTGGAG 59.236 66.667 0.00 0.00 0.00 3.86
3081 3166 2.160853 GGTTTGGGAGGGGTGGAGT 61.161 63.158 0.00 0.00 0.00 3.85
3082 3167 1.379146 GTTTGGGAGGGGTGGAGTC 59.621 63.158 0.00 0.00 0.00 3.36
3083 3168 1.073319 TTTGGGAGGGGTGGAGTCA 60.073 57.895 0.00 0.00 0.00 3.41
3084 3169 1.423794 TTTGGGAGGGGTGGAGTCAC 61.424 60.000 0.00 0.00 42.91 3.67
3085 3170 2.203938 GGGAGGGGTGGAGTCACA 60.204 66.667 0.00 0.00 45.32 3.58
3086 3171 2.593956 GGGAGGGGTGGAGTCACAC 61.594 68.421 0.00 0.00 46.18 3.82
3093 3178 3.855159 GTGGAGTCACACCATACCC 57.145 57.895 0.00 0.00 43.13 3.69
3094 3179 1.276622 GTGGAGTCACACCATACCCT 58.723 55.000 0.00 0.00 43.13 4.34
3095 3180 1.628846 GTGGAGTCACACCATACCCTT 59.371 52.381 0.00 0.00 43.13 3.95
3096 3181 2.835764 GTGGAGTCACACCATACCCTTA 59.164 50.000 0.00 0.00 43.13 2.69
3097 3182 3.454812 GTGGAGTCACACCATACCCTTAT 59.545 47.826 0.00 0.00 43.13 1.73
3098 3183 3.709653 TGGAGTCACACCATACCCTTATC 59.290 47.826 0.00 0.00 32.03 1.75
3099 3184 3.967987 GGAGTCACACCATACCCTTATCT 59.032 47.826 0.00 0.00 0.00 1.98
3100 3185 4.202264 GGAGTCACACCATACCCTTATCTG 60.202 50.000 0.00 0.00 0.00 2.90
3101 3186 4.362677 AGTCACACCATACCCTTATCTGT 58.637 43.478 0.00 0.00 0.00 3.41
3102 3187 4.406003 AGTCACACCATACCCTTATCTGTC 59.594 45.833 0.00 0.00 0.00 3.51
3103 3188 4.406003 GTCACACCATACCCTTATCTGTCT 59.594 45.833 0.00 0.00 0.00 3.41
3104 3189 5.030147 TCACACCATACCCTTATCTGTCTT 58.970 41.667 0.00 0.00 0.00 3.01
3105 3190 5.487488 TCACACCATACCCTTATCTGTCTTT 59.513 40.000 0.00 0.00 0.00 2.52
3106 3191 5.817816 CACACCATACCCTTATCTGTCTTTC 59.182 44.000 0.00 0.00 0.00 2.62
3107 3192 5.726793 ACACCATACCCTTATCTGTCTTTCT 59.273 40.000 0.00 0.00 0.00 2.52
3108 3193 6.215636 ACACCATACCCTTATCTGTCTTTCTT 59.784 38.462 0.00 0.00 0.00 2.52
3109 3194 7.402071 ACACCATACCCTTATCTGTCTTTCTTA 59.598 37.037 0.00 0.00 0.00 2.10
3110 3195 8.265055 CACCATACCCTTATCTGTCTTTCTTAA 58.735 37.037 0.00 0.00 0.00 1.85
3111 3196 8.832735 ACCATACCCTTATCTGTCTTTCTTAAA 58.167 33.333 0.00 0.00 0.00 1.52
3112 3197 9.110502 CCATACCCTTATCTGTCTTTCTTAAAC 57.889 37.037 0.00 0.00 0.00 2.01
3113 3198 9.667107 CATACCCTTATCTGTCTTTCTTAAACA 57.333 33.333 0.00 0.00 0.00 2.83
3116 3201 9.668497 ACCCTTATCTGTCTTTCTTAAACATAC 57.332 33.333 0.00 0.00 0.00 2.39
3117 3202 9.110502 CCCTTATCTGTCTTTCTTAAACATACC 57.889 37.037 0.00 0.00 0.00 2.73
3118 3203 9.110502 CCTTATCTGTCTTTCTTAAACATACCC 57.889 37.037 0.00 0.00 0.00 3.69
3119 3204 9.667107 CTTATCTGTCTTTCTTAAACATACCCA 57.333 33.333 0.00 0.00 0.00 4.51
3121 3206 8.738645 ATCTGTCTTTCTTAAACATACCCATC 57.261 34.615 0.00 0.00 0.00 3.51
3122 3207 7.685481 TCTGTCTTTCTTAAACATACCCATCA 58.315 34.615 0.00 0.00 0.00 3.07
3123 3208 7.606456 TCTGTCTTTCTTAAACATACCCATCAC 59.394 37.037 0.00 0.00 0.00 3.06
3124 3209 7.458397 TGTCTTTCTTAAACATACCCATCACT 58.542 34.615 0.00 0.00 0.00 3.41
3125 3210 7.606456 TGTCTTTCTTAAACATACCCATCACTC 59.394 37.037 0.00 0.00 0.00 3.51
3126 3211 7.606456 GTCTTTCTTAAACATACCCATCACTCA 59.394 37.037 0.00 0.00 0.00 3.41
3127 3212 8.328758 TCTTTCTTAAACATACCCATCACTCAT 58.671 33.333 0.00 0.00 0.00 2.90
3128 3213 9.613428 CTTTCTTAAACATACCCATCACTCATA 57.387 33.333 0.00 0.00 0.00 2.15
3131 3216 9.778741 TCTTAAACATACCCATCACTCATATTC 57.221 33.333 0.00 0.00 0.00 1.75
3132 3217 9.559732 CTTAAACATACCCATCACTCATATTCA 57.440 33.333 0.00 0.00 0.00 2.57
3135 3220 9.507329 AAACATACCCATCACTCATATTCATAC 57.493 33.333 0.00 0.00 0.00 2.39
3136 3221 7.624549 ACATACCCATCACTCATATTCATACC 58.375 38.462 0.00 0.00 0.00 2.73
3137 3222 7.237471 ACATACCCATCACTCATATTCATACCA 59.763 37.037 0.00 0.00 0.00 3.25
3138 3223 6.119240 ACCCATCACTCATATTCATACCAG 57.881 41.667 0.00 0.00 0.00 4.00
3139 3224 4.940046 CCCATCACTCATATTCATACCAGC 59.060 45.833 0.00 0.00 0.00 4.85
3140 3225 5.513614 CCCATCACTCATATTCATACCAGCA 60.514 44.000 0.00 0.00 0.00 4.41
3141 3226 6.178324 CCATCACTCATATTCATACCAGCAT 58.822 40.000 0.00 0.00 0.00 3.79
3142 3227 6.657966 CCATCACTCATATTCATACCAGCATT 59.342 38.462 0.00 0.00 0.00 3.56
3143 3228 7.361799 CCATCACTCATATTCATACCAGCATTG 60.362 40.741 0.00 0.00 0.00 2.82
3173 3258 3.784511 TTTTCATGTACCCGTAACCCA 57.215 42.857 0.00 0.00 0.00 4.51
3174 3259 3.337694 TTTCATGTACCCGTAACCCAG 57.662 47.619 0.00 0.00 0.00 4.45
3175 3260 0.538118 TCATGTACCCGTAACCCAGC 59.462 55.000 0.00 0.00 0.00 4.85
3176 3261 0.250793 CATGTACCCGTAACCCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
3177 3262 1.134220 CATGTACCCGTAACCCAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
3178 3263 0.538118 TGTACCCGTAACCCAGCATC 59.462 55.000 0.00 0.00 0.00 3.91
3179 3264 0.538118 GTACCCGTAACCCAGCATCA 59.462 55.000 0.00 0.00 0.00 3.07
3180 3265 1.140252 GTACCCGTAACCCAGCATCAT 59.860 52.381 0.00 0.00 0.00 2.45
3181 3266 1.502690 ACCCGTAACCCAGCATCATA 58.497 50.000 0.00 0.00 0.00 2.15
3182 3267 1.841277 ACCCGTAACCCAGCATCATAA 59.159 47.619 0.00 0.00 0.00 1.90
3183 3268 2.240160 ACCCGTAACCCAGCATCATAAA 59.760 45.455 0.00 0.00 0.00 1.40
3184 3269 3.117663 ACCCGTAACCCAGCATCATAAAT 60.118 43.478 0.00 0.00 0.00 1.40
3185 3270 3.253188 CCCGTAACCCAGCATCATAAATG 59.747 47.826 0.00 0.00 0.00 2.32
3186 3271 3.253188 CCGTAACCCAGCATCATAAATGG 59.747 47.826 0.00 0.00 0.00 3.16
3190 3275 1.342174 CCCAGCATCATAAATGGGTGC 59.658 52.381 11.05 11.05 46.19 5.01
3191 3276 1.342174 CCAGCATCATAAATGGGTGCC 59.658 52.381 13.80 0.00 39.17 5.01
3192 3277 1.342174 CAGCATCATAAATGGGTGCCC 59.658 52.381 13.80 0.00 39.17 5.36
3193 3278 0.314935 GCATCATAAATGGGTGCCCG 59.685 55.000 2.44 0.00 39.42 6.13
3194 3279 0.314935 CATCATAAATGGGTGCCCGC 59.685 55.000 2.44 0.00 39.42 6.13
3195 3280 1.172180 ATCATAAATGGGTGCCCGCG 61.172 55.000 0.00 0.00 39.42 6.46
3196 3281 2.518349 ATAAATGGGTGCCCGCGG 60.518 61.111 21.04 21.04 39.42 6.46
3197 3282 4.805768 TAAATGGGTGCCCGCGGG 62.806 66.667 40.26 40.26 39.42 6.13
3203 3288 2.984718 GGTGCCCGCGGGTAAAAA 60.985 61.111 42.53 21.88 37.65 1.94
3204 3289 2.344981 GGTGCCCGCGGGTAAAAAT 61.345 57.895 42.53 0.00 37.65 1.82
3205 3290 1.153920 GTGCCCGCGGGTAAAAATG 60.154 57.895 42.53 17.60 37.65 2.32
3206 3291 2.202690 GCCCGCGGGTAAAAATGC 60.203 61.111 42.53 23.54 37.65 3.56
3207 3292 2.995872 GCCCGCGGGTAAAAATGCA 61.996 57.895 42.53 0.00 37.65 3.96
3208 3293 1.153920 CCCGCGGGTAAAAATGCAC 60.154 57.895 36.64 0.00 0.00 4.57
3209 3294 1.581954 CCGCGGGTAAAAATGCACA 59.418 52.632 20.10 0.00 0.00 4.57
3210 3295 0.731174 CCGCGGGTAAAAATGCACAC 60.731 55.000 20.10 0.00 0.00 3.82
3211 3296 0.039978 CGCGGGTAAAAATGCACACA 60.040 50.000 0.00 0.00 0.00 3.72
3212 3297 1.600663 CGCGGGTAAAAATGCACACAA 60.601 47.619 0.00 0.00 0.00 3.33
3213 3298 2.682836 GCGGGTAAAAATGCACACAAT 58.317 42.857 0.00 0.00 0.00 2.71
3214 3299 3.063485 GCGGGTAAAAATGCACACAATT 58.937 40.909 0.00 0.00 0.00 2.32
3215 3300 3.120718 GCGGGTAAAAATGCACACAATTG 60.121 43.478 3.24 3.24 0.00 2.32
3216 3301 3.120718 CGGGTAAAAATGCACACAATTGC 60.121 43.478 5.05 0.00 43.31 3.56
3224 3309 2.867456 GCACACAATTGCAAAGCATC 57.133 45.000 1.71 0.00 42.49 3.91
3225 3310 2.136728 GCACACAATTGCAAAGCATCA 58.863 42.857 1.71 0.00 42.49 3.07
3226 3311 2.544686 GCACACAATTGCAAAGCATCAA 59.455 40.909 1.71 0.00 42.49 2.57
3227 3312 3.187637 GCACACAATTGCAAAGCATCAAT 59.812 39.130 1.71 0.00 42.49 2.57
3228 3313 4.319911 GCACACAATTGCAAAGCATCAATT 60.320 37.500 1.71 0.00 41.88 2.32
3229 3314 5.753744 CACACAATTGCAAAGCATCAATTT 58.246 33.333 1.71 0.00 39.92 1.82
3230 3315 5.623264 CACACAATTGCAAAGCATCAATTTG 59.377 36.000 1.71 2.45 39.92 2.32
3231 3316 5.527951 ACACAATTGCAAAGCATCAATTTGA 59.472 32.000 1.71 0.75 39.92 2.69
3232 3317 6.077197 CACAATTGCAAAGCATCAATTTGAG 58.923 36.000 1.71 0.00 39.92 3.02
3233 3318 4.939509 ATTGCAAAGCATCAATTTGAGC 57.060 36.364 1.71 8.57 39.50 4.26
3234 3319 3.388345 TGCAAAGCATCAATTTGAGCA 57.612 38.095 17.32 11.91 39.50 4.26
3235 3320 3.322369 TGCAAAGCATCAATTTGAGCAG 58.678 40.909 17.32 7.43 39.50 4.24
3236 3321 2.093783 GCAAAGCATCAATTTGAGCAGC 59.906 45.455 17.32 14.45 39.50 5.25
3237 3322 2.667473 AAGCATCAATTTGAGCAGCC 57.333 45.000 17.32 1.94 0.00 4.85
3238 3323 0.822164 AGCATCAATTTGAGCAGCCC 59.178 50.000 17.32 0.00 0.00 5.19
3239 3324 0.533491 GCATCAATTTGAGCAGCCCA 59.467 50.000 5.21 0.00 0.00 5.36
3240 3325 1.138266 GCATCAATTTGAGCAGCCCAT 59.862 47.619 5.21 0.00 0.00 4.00
3241 3326 2.363038 GCATCAATTTGAGCAGCCCATA 59.637 45.455 5.21 0.00 0.00 2.74
3242 3327 3.552273 GCATCAATTTGAGCAGCCCATAG 60.552 47.826 5.21 0.00 0.00 2.23
3243 3328 2.026641 TCAATTTGAGCAGCCCATAGC 58.973 47.619 0.00 0.00 44.25 2.97
3244 3329 1.068127 CAATTTGAGCAGCCCATAGCC 59.932 52.381 0.00 0.00 45.47 3.93
3245 3330 0.259647 ATTTGAGCAGCCCATAGCCA 59.740 50.000 0.00 0.00 45.47 4.75
3246 3331 0.259647 TTTGAGCAGCCCATAGCCAT 59.740 50.000 0.00 0.00 45.47 4.40
3247 3332 1.139439 TTGAGCAGCCCATAGCCATA 58.861 50.000 0.00 0.00 45.47 2.74
3248 3333 1.139439 TGAGCAGCCCATAGCCATAA 58.861 50.000 0.00 0.00 45.47 1.90
3249 3334 1.494296 TGAGCAGCCCATAGCCATAAA 59.506 47.619 0.00 0.00 45.47 1.40
3250 3335 2.091939 TGAGCAGCCCATAGCCATAAAA 60.092 45.455 0.00 0.00 45.47 1.52
3251 3336 2.958355 GAGCAGCCCATAGCCATAAAAA 59.042 45.455 0.00 0.00 45.47 1.94
3293 3378 8.908786 ATATGTAAACAACTAGACCATGATGG 57.091 34.615 10.53 10.53 45.02 3.51
3321 3406 2.816083 CGCGCCCGTCCATGTTTA 60.816 61.111 0.00 0.00 0.00 2.01
3731 3817 6.790319 AGTTTATTTTGGGTCTGTGTCCTAT 58.210 36.000 0.00 0.00 0.00 2.57
3740 3826 3.372133 GGTCTGTGTCCTATCCAGAGAGA 60.372 52.174 0.00 0.00 35.99 3.10
3745 3831 2.772515 TGTCCTATCCAGAGAGACGAGA 59.227 50.000 0.00 0.00 0.00 4.04
3748 3834 3.200165 TCCTATCCAGAGAGACGAGACAA 59.800 47.826 0.00 0.00 0.00 3.18
3771 3857 6.471233 ACGATGTATCTCTGAAGATGGAAA 57.529 37.500 0.00 0.00 42.36 3.13
3795 3881 3.460825 AGTTATTTCTGCCTAGTCCCCA 58.539 45.455 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.109126 CAGCCGCTTCCTGGTAAGC 61.109 63.158 16.19 16.19 46.78 3.09
4 5 2.046314 GCAGCCGCTTCCTGGTAA 60.046 61.111 0.00 0.00 34.30 2.85
5 6 4.096003 GGCAGCCGCTTCCTGGTA 62.096 66.667 1.23 0.00 38.60 3.25
26 27 4.335584 CTCCTCCGCGATCGCCTC 62.336 72.222 32.63 7.86 37.98 4.70
82 84 2.039787 TACCGGGCCACCTGATGA 59.960 61.111 6.32 0.00 29.82 2.92
90 92 1.613928 TTGTCATCCTACCGGGCCA 60.614 57.895 6.32 0.00 34.39 5.36
99 101 1.003355 CCGGCACTGTTGTCATCCT 60.003 57.895 0.00 0.00 0.00 3.24
154 156 0.892755 AATCTGCGACCTGTCCGTTA 59.107 50.000 0.00 0.00 0.00 3.18
155 157 0.389948 GAATCTGCGACCTGTCCGTT 60.390 55.000 0.00 0.00 0.00 4.44
191 193 3.649277 CTCTGTCGCCTCCCGTTGG 62.649 68.421 0.00 0.00 38.35 3.77
193 195 4.070552 GCTCTGTCGCCTCCCGTT 62.071 66.667 0.00 0.00 38.35 4.44
204 206 3.986054 TGGGACACAAGGCTCTGT 58.014 55.556 0.00 0.00 0.00 3.41
261 263 2.047179 GTGAAGGTGCGGTCTCCC 60.047 66.667 0.00 0.00 0.00 4.30
305 307 1.006805 CATCCTCCATCGCCGTCTC 60.007 63.158 0.00 0.00 0.00 3.36
309 311 1.490693 CGTTTCATCCTCCATCGCCG 61.491 60.000 0.00 0.00 0.00 6.46
310 312 1.160329 CCGTTTCATCCTCCATCGCC 61.160 60.000 0.00 0.00 0.00 5.54
311 313 1.160329 CCCGTTTCATCCTCCATCGC 61.160 60.000 0.00 0.00 0.00 4.58
312 314 1.160329 GCCCGTTTCATCCTCCATCG 61.160 60.000 0.00 0.00 0.00 3.84
343 356 3.229293 GACCCTAAAGCTATCCTACGGT 58.771 50.000 0.00 0.00 0.00 4.83
355 368 2.781681 ACAATGACCCGACCCTAAAG 57.218 50.000 0.00 0.00 0.00 1.85
483 503 8.655970 GCCGCATACATTTAAAATTCTTTTTCT 58.344 29.630 0.00 0.00 36.47 2.52
492 512 8.575589 TCAATCATAGCCGCATACATTTAAAAT 58.424 29.630 0.00 0.00 0.00 1.82
496 516 6.347321 CGTTCAATCATAGCCGCATACATTTA 60.347 38.462 0.00 0.00 0.00 1.40
512 532 1.582610 GGAAAGCGGCCGTTCAATCA 61.583 55.000 28.70 0.00 32.06 2.57
527 547 0.396435 AGTGGACACAGATGCGGAAA 59.604 50.000 5.14 0.00 0.00 3.13
529 549 1.184970 TCAGTGGACACAGATGCGGA 61.185 55.000 5.14 0.00 0.00 5.54
543 563 3.883744 GACACGGGGCCAGTCAGTG 62.884 68.421 6.27 7.17 38.63 3.66
544 564 3.626924 GACACGGGGCCAGTCAGT 61.627 66.667 6.27 2.44 32.68 3.41
545 565 4.394712 GGACACGGGGCCAGTCAG 62.395 72.222 3.36 8.58 34.04 3.51
547 567 3.717294 ATGGACACGGGGCCAGTC 61.717 66.667 21.92 10.34 37.64 3.51
548 568 4.033776 CATGGACACGGGGCCAGT 62.034 66.667 21.92 2.88 37.64 4.00
549 569 3.266686 TTCATGGACACGGGGCCAG 62.267 63.158 21.92 10.95 37.64 4.85
550 570 3.253061 TTCATGGACACGGGGCCA 61.253 61.111 18.90 18.90 38.78 5.36
551 571 2.750237 GTTCATGGACACGGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
552 572 3.124921 CGTTCATGGACACGGGGC 61.125 66.667 4.68 0.00 32.58 5.80
556 576 2.135139 CCATATCCGTTCATGGACACG 58.865 52.381 4.68 5.55 43.80 4.49
557 577 3.469008 TCCATATCCGTTCATGGACAC 57.531 47.619 4.68 0.00 44.55 3.67
561 581 3.769739 TCCTTCCATATCCGTTCATGG 57.230 47.619 0.00 0.00 42.67 3.66
562 582 6.639632 AATTTCCTTCCATATCCGTTCATG 57.360 37.500 0.00 0.00 0.00 3.07
563 583 6.461509 GCAAATTTCCTTCCATATCCGTTCAT 60.462 38.462 0.00 0.00 0.00 2.57
564 584 5.163561 GCAAATTTCCTTCCATATCCGTTCA 60.164 40.000 0.00 0.00 0.00 3.18
565 585 5.281727 GCAAATTTCCTTCCATATCCGTTC 58.718 41.667 0.00 0.00 0.00 3.95
566 586 4.202010 CGCAAATTTCCTTCCATATCCGTT 60.202 41.667 0.00 0.00 0.00 4.44
567 587 3.315191 CGCAAATTTCCTTCCATATCCGT 59.685 43.478 0.00 0.00 0.00 4.69
568 588 3.304659 CCGCAAATTTCCTTCCATATCCG 60.305 47.826 0.00 0.00 0.00 4.18
569 589 3.005791 CCCGCAAATTTCCTTCCATATCC 59.994 47.826 0.00 0.00 0.00 2.59
570 590 3.888930 TCCCGCAAATTTCCTTCCATATC 59.111 43.478 0.00 0.00 0.00 1.63
571 591 3.636764 GTCCCGCAAATTTCCTTCCATAT 59.363 43.478 0.00 0.00 0.00 1.78
572 592 3.020984 GTCCCGCAAATTTCCTTCCATA 58.979 45.455 0.00 0.00 0.00 2.74
573 593 1.824852 GTCCCGCAAATTTCCTTCCAT 59.175 47.619 0.00 0.00 0.00 3.41
574 594 1.253100 GTCCCGCAAATTTCCTTCCA 58.747 50.000 0.00 0.00 0.00 3.53
575 595 0.170339 CGTCCCGCAAATTTCCTTCC 59.830 55.000 0.00 0.00 0.00 3.46
576 596 3.694889 CGTCCCGCAAATTTCCTTC 57.305 52.632 0.00 0.00 0.00 3.46
588 608 3.606662 ATCTCCGATGGCGTCCCG 61.607 66.667 0.14 0.00 35.23 5.14
589 609 2.029666 CATCTCCGATGGCGTCCC 59.970 66.667 0.14 0.00 35.23 4.46
590 610 2.663188 GCATCTCCGATGGCGTCC 60.663 66.667 0.14 0.00 35.23 4.79
591 611 2.663188 GGCATCTCCGATGGCGTC 60.663 66.667 13.46 0.00 34.93 5.19
592 612 2.329539 AATGGCATCTCCGATGGCGT 62.330 55.000 20.61 18.60 46.12 5.68
593 613 0.320683 TAATGGCATCTCCGATGGCG 60.321 55.000 20.61 0.00 46.12 5.69
594 614 2.012673 GATAATGGCATCTCCGATGGC 58.987 52.381 19.66 19.66 43.83 4.40
595 615 2.026915 TGGATAATGGCATCTCCGATGG 60.027 50.000 18.76 0.00 37.80 3.51
596 616 3.268330 CTGGATAATGGCATCTCCGATG 58.732 50.000 18.76 10.97 37.80 3.84
597 617 2.909006 ACTGGATAATGGCATCTCCGAT 59.091 45.455 18.76 10.18 37.80 4.18
598 618 2.329267 ACTGGATAATGGCATCTCCGA 58.671 47.619 18.76 10.58 37.80 4.55
599 619 2.810274 CAACTGGATAATGGCATCTCCG 59.190 50.000 18.76 16.08 37.80 4.63
600 620 3.817647 GACAACTGGATAATGGCATCTCC 59.182 47.826 17.76 17.76 0.00 3.71
601 621 3.496130 CGACAACTGGATAATGGCATCTC 59.504 47.826 0.00 0.60 0.00 2.75
602 622 3.134623 TCGACAACTGGATAATGGCATCT 59.865 43.478 0.00 0.00 0.00 2.90
603 623 3.466836 TCGACAACTGGATAATGGCATC 58.533 45.455 0.00 0.00 0.00 3.91
604 624 3.558931 TCGACAACTGGATAATGGCAT 57.441 42.857 0.00 0.00 0.00 4.40
605 625 3.006940 GTTCGACAACTGGATAATGGCA 58.993 45.455 0.00 0.00 0.00 4.92
606 626 3.006940 TGTTCGACAACTGGATAATGGC 58.993 45.455 0.00 0.00 33.17 4.40
607 627 4.253685 ACTGTTCGACAACTGGATAATGG 58.746 43.478 0.00 0.00 36.12 3.16
608 628 6.961359 TTACTGTTCGACAACTGGATAATG 57.039 37.500 0.00 0.00 36.12 1.90
609 629 7.434307 CGTATTACTGTTCGACAACTGGATAAT 59.566 37.037 0.00 0.00 36.12 1.28
610 630 6.748658 CGTATTACTGTTCGACAACTGGATAA 59.251 38.462 0.00 0.00 36.12 1.75
611 631 6.127925 ACGTATTACTGTTCGACAACTGGATA 60.128 38.462 0.00 0.00 36.12 2.59
612 632 5.100259 CGTATTACTGTTCGACAACTGGAT 58.900 41.667 0.00 0.00 36.12 3.41
613 633 4.022935 ACGTATTACTGTTCGACAACTGGA 60.023 41.667 0.00 0.00 36.12 3.86
614 634 4.232221 ACGTATTACTGTTCGACAACTGG 58.768 43.478 0.00 0.00 36.12 4.00
615 635 6.309436 TCTACGTATTACTGTTCGACAACTG 58.691 40.000 0.00 0.00 37.45 3.16
616 636 6.486253 TCTACGTATTACTGTTCGACAACT 57.514 37.500 0.00 0.00 33.17 3.16
617 637 6.798959 ACTTCTACGTATTACTGTTCGACAAC 59.201 38.462 0.00 0.00 0.00 3.32
618 638 6.902341 ACTTCTACGTATTACTGTTCGACAA 58.098 36.000 0.00 0.00 0.00 3.18
619 639 6.486253 ACTTCTACGTATTACTGTTCGACA 57.514 37.500 0.00 0.00 0.00 4.35
620 640 9.790433 CTATACTTCTACGTATTACTGTTCGAC 57.210 37.037 0.00 0.00 32.63 4.20
621 641 9.750125 TCTATACTTCTACGTATTACTGTTCGA 57.250 33.333 0.00 0.00 32.63 3.71
631 651 9.153721 CGAAGAGGATTCTATACTTCTACGTAT 57.846 37.037 0.00 0.00 36.04 3.06
632 652 8.147058 ACGAAGAGGATTCTATACTTCTACGTA 58.853 37.037 0.00 0.00 36.04 3.57
633 653 6.991531 ACGAAGAGGATTCTATACTTCTACGT 59.008 38.462 0.00 0.00 36.04 3.57
634 654 7.292292 CACGAAGAGGATTCTATACTTCTACG 58.708 42.308 0.00 0.00 36.04 3.51
635 655 7.229106 ACCACGAAGAGGATTCTATACTTCTAC 59.771 40.741 0.00 0.00 42.26 2.59
636 656 7.228906 CACCACGAAGAGGATTCTATACTTCTA 59.771 40.741 0.00 0.00 42.26 2.10
637 657 6.039941 CACCACGAAGAGGATTCTATACTTCT 59.960 42.308 0.00 0.00 42.26 2.85
638 658 6.210078 CACCACGAAGAGGATTCTATACTTC 58.790 44.000 0.00 0.00 42.26 3.01
639 659 5.069251 CCACCACGAAGAGGATTCTATACTT 59.931 44.000 0.00 0.00 42.26 2.24
640 660 4.585162 CCACCACGAAGAGGATTCTATACT 59.415 45.833 0.00 0.00 42.26 2.12
641 661 4.583489 TCCACCACGAAGAGGATTCTATAC 59.417 45.833 0.00 0.00 42.26 1.47
642 662 4.800023 TCCACCACGAAGAGGATTCTATA 58.200 43.478 0.00 0.00 42.26 1.31
643 663 3.643237 TCCACCACGAAGAGGATTCTAT 58.357 45.455 0.00 0.00 42.26 1.98
644 664 3.095912 TCCACCACGAAGAGGATTCTA 57.904 47.619 0.00 0.00 42.26 2.10
645 665 1.938585 TCCACCACGAAGAGGATTCT 58.061 50.000 0.00 0.00 42.26 2.40
646 666 2.028020 AGTTCCACCACGAAGAGGATTC 60.028 50.000 0.00 0.00 42.26 2.52
647 667 1.978580 AGTTCCACCACGAAGAGGATT 59.021 47.619 0.00 0.00 42.26 3.01
648 668 1.645710 AGTTCCACCACGAAGAGGAT 58.354 50.000 0.00 0.00 42.26 3.24
649 669 2.297698 TAGTTCCACCACGAAGAGGA 57.702 50.000 0.00 0.00 42.26 3.71
650 670 3.611766 ATTAGTTCCACCACGAAGAGG 57.388 47.619 0.00 0.00 46.17 3.69
651 671 4.091509 CGAAATTAGTTCCACCACGAAGAG 59.908 45.833 0.00 0.00 31.99 2.85
652 672 3.991773 CGAAATTAGTTCCACCACGAAGA 59.008 43.478 0.00 0.00 31.99 2.87
653 673 3.991773 TCGAAATTAGTTCCACCACGAAG 59.008 43.478 0.00 0.00 31.99 3.79
654 674 3.992643 TCGAAATTAGTTCCACCACGAA 58.007 40.909 0.00 0.00 31.99 3.85
655 675 3.663995 TCGAAATTAGTTCCACCACGA 57.336 42.857 0.00 0.00 31.99 4.35
656 676 4.939509 ATTCGAAATTAGTTCCACCACG 57.060 40.909 0.00 0.00 31.99 4.94
657 677 7.813645 AGTAAATTCGAAATTAGTTCCACCAC 58.186 34.615 5.92 0.00 31.99 4.16
658 678 7.989416 AGTAAATTCGAAATTAGTTCCACCA 57.011 32.000 5.92 0.00 31.99 4.17
659 679 9.124807 CAAAGTAAATTCGAAATTAGTTCCACC 57.875 33.333 20.82 3.77 31.99 4.61
660 680 9.887406 TCAAAGTAAATTCGAAATTAGTTCCAC 57.113 29.630 20.82 6.40 31.99 4.02
661 681 9.887406 GTCAAAGTAAATTCGAAATTAGTTCCA 57.113 29.630 20.82 11.27 31.99 3.53
662 682 9.338291 GGTCAAAGTAAATTCGAAATTAGTTCC 57.662 33.333 20.82 15.69 31.99 3.62
664 684 9.893305 CAGGTCAAAGTAAATTCGAAATTAGTT 57.107 29.630 16.76 16.76 0.00 2.24
665 685 8.021396 GCAGGTCAAAGTAAATTCGAAATTAGT 58.979 33.333 5.92 6.70 0.00 2.24
666 686 7.484959 GGCAGGTCAAAGTAAATTCGAAATTAG 59.515 37.037 5.92 0.00 0.00 1.73
667 687 7.040340 TGGCAGGTCAAAGTAAATTCGAAATTA 60.040 33.333 0.00 0.83 0.00 1.40
668 688 6.156519 GGCAGGTCAAAGTAAATTCGAAATT 58.843 36.000 0.00 2.05 0.00 1.82
669 689 5.242838 TGGCAGGTCAAAGTAAATTCGAAAT 59.757 36.000 0.00 0.00 0.00 2.17
670 690 4.580995 TGGCAGGTCAAAGTAAATTCGAAA 59.419 37.500 0.00 0.00 0.00 3.46
671 691 4.138290 TGGCAGGTCAAAGTAAATTCGAA 58.862 39.130 0.00 0.00 0.00 3.71
672 692 3.745799 TGGCAGGTCAAAGTAAATTCGA 58.254 40.909 0.00 0.00 0.00 3.71
673 693 4.497473 TTGGCAGGTCAAAGTAAATTCG 57.503 40.909 0.00 0.00 0.00 3.34
682 702 2.428834 CCAGCTTTGGCAGGTCAAA 58.571 52.632 0.00 0.00 39.81 2.69
683 703 4.179361 CCAGCTTTGGCAGGTCAA 57.821 55.556 0.00 0.00 39.81 3.18
688 708 7.559486 TGATATAGATATACCAGCTTTGGCAG 58.441 38.462 0.00 0.00 41.70 4.85
689 709 7.494922 TGATATAGATATACCAGCTTTGGCA 57.505 36.000 0.00 0.00 41.70 4.92
690 710 7.497249 CCTTGATATAGATATACCAGCTTTGGC 59.503 40.741 0.00 0.00 39.06 4.52
691 711 8.543774 ACCTTGATATAGATATACCAGCTTTGG 58.456 37.037 0.00 0.00 0.00 3.28
713 733 5.869649 AGTTTGGATTGCAAGTTTACCTT 57.130 34.783 4.94 0.00 0.00 3.50
714 734 6.303839 TCTAGTTTGGATTGCAAGTTTACCT 58.696 36.000 4.94 0.00 0.00 3.08
715 735 6.569179 TCTAGTTTGGATTGCAAGTTTACC 57.431 37.500 4.94 4.07 0.00 2.85
716 736 7.816640 TGATCTAGTTTGGATTGCAAGTTTAC 58.183 34.615 4.94 0.00 0.00 2.01
717 737 7.994425 TGATCTAGTTTGGATTGCAAGTTTA 57.006 32.000 4.94 0.00 0.00 2.01
718 738 6.899393 TGATCTAGTTTGGATTGCAAGTTT 57.101 33.333 4.94 0.00 0.00 2.66
719 739 7.472334 AATGATCTAGTTTGGATTGCAAGTT 57.528 32.000 4.94 0.00 0.00 2.66
720 740 7.472334 AAATGATCTAGTTTGGATTGCAAGT 57.528 32.000 4.94 0.00 0.00 3.16
721 741 8.896744 TCTAAATGATCTAGTTTGGATTGCAAG 58.103 33.333 4.94 0.00 0.00 4.01
722 742 8.806429 TCTAAATGATCTAGTTTGGATTGCAA 57.194 30.769 0.00 0.00 0.00 4.08
723 743 8.985315 ATCTAAATGATCTAGTTTGGATTGCA 57.015 30.769 9.89 0.00 33.49 4.08
735 755 9.706691 CGGGCTTACTTTTATCTAAATGATCTA 57.293 33.333 0.00 0.00 36.65 1.98
736 756 7.661847 CCGGGCTTACTTTTATCTAAATGATCT 59.338 37.037 0.00 0.00 36.65 2.75
737 757 7.573283 GCCGGGCTTACTTTTATCTAAATGATC 60.573 40.741 12.87 0.00 36.65 2.92
738 758 6.206829 GCCGGGCTTACTTTTATCTAAATGAT 59.793 38.462 12.87 0.00 39.11 2.45
739 759 5.529800 GCCGGGCTTACTTTTATCTAAATGA 59.470 40.000 12.87 0.00 0.00 2.57
740 760 5.278315 GGCCGGGCTTACTTTTATCTAAATG 60.278 44.000 22.87 0.00 0.00 2.32
741 761 4.825634 GGCCGGGCTTACTTTTATCTAAAT 59.174 41.667 22.87 0.00 0.00 1.40
742 762 4.201657 GGCCGGGCTTACTTTTATCTAAA 58.798 43.478 22.87 0.00 0.00 1.85
743 763 3.742013 CGGCCGGGCTTACTTTTATCTAA 60.742 47.826 27.04 0.00 0.00 2.10
744 764 2.224113 CGGCCGGGCTTACTTTTATCTA 60.224 50.000 27.04 0.00 0.00 1.98
745 765 1.474498 CGGCCGGGCTTACTTTTATCT 60.474 52.381 27.04 0.00 0.00 1.98
746 766 0.942252 CGGCCGGGCTTACTTTTATC 59.058 55.000 27.04 0.00 0.00 1.75
747 767 0.464916 CCGGCCGGGCTTACTTTTAT 60.465 55.000 37.42 0.00 0.00 1.40
748 768 1.078285 CCGGCCGGGCTTACTTTTA 60.078 57.895 37.42 0.00 0.00 1.52
749 769 2.360726 CCGGCCGGGCTTACTTTT 60.361 61.111 37.42 0.00 0.00 2.27
750 770 3.324108 TCCGGCCGGGCTTACTTT 61.324 61.111 42.36 0.00 34.94 2.66
751 771 4.091939 GTCCGGCCGGGCTTACTT 62.092 66.667 40.95 0.00 36.84 2.24
759 779 2.905807 GATCTACTCGTCCGGCCGG 61.906 68.421 39.13 39.13 0.00 6.13
760 780 1.516365 ATGATCTACTCGTCCGGCCG 61.516 60.000 21.04 21.04 0.00 6.13
761 781 0.674534 AATGATCTACTCGTCCGGCC 59.325 55.000 0.00 0.00 0.00 6.13
762 782 2.223735 TGAAATGATCTACTCGTCCGGC 60.224 50.000 0.00 0.00 0.00 6.13
763 783 3.710326 TGAAATGATCTACTCGTCCGG 57.290 47.619 0.00 0.00 0.00 5.14
764 784 4.084849 GCAATGAAATGATCTACTCGTCCG 60.085 45.833 0.00 0.00 0.00 4.79
765 785 4.212214 GGCAATGAAATGATCTACTCGTCC 59.788 45.833 0.00 0.00 0.00 4.79
766 786 4.212214 GGGCAATGAAATGATCTACTCGTC 59.788 45.833 0.00 0.00 0.00 4.20
767 787 4.130118 GGGCAATGAAATGATCTACTCGT 58.870 43.478 0.00 0.00 0.00 4.18
768 788 4.384056 AGGGCAATGAAATGATCTACTCG 58.616 43.478 0.00 0.00 0.00 4.18
769 789 4.450419 CGAGGGCAATGAAATGATCTACTC 59.550 45.833 0.00 0.00 0.00 2.59
770 790 4.141620 ACGAGGGCAATGAAATGATCTACT 60.142 41.667 0.00 0.00 0.00 2.57
771 791 4.130118 ACGAGGGCAATGAAATGATCTAC 58.870 43.478 0.00 0.00 0.00 2.59
772 792 4.380531 GACGAGGGCAATGAAATGATCTA 58.619 43.478 0.00 0.00 0.00 1.98
773 793 3.209410 GACGAGGGCAATGAAATGATCT 58.791 45.455 0.00 0.00 0.00 2.75
774 794 2.291741 GGACGAGGGCAATGAAATGATC 59.708 50.000 0.00 0.00 0.00 2.92
775 795 2.301346 GGACGAGGGCAATGAAATGAT 58.699 47.619 0.00 0.00 0.00 2.45
776 796 1.750193 GGACGAGGGCAATGAAATGA 58.250 50.000 0.00 0.00 0.00 2.57
777 797 0.378257 CGGACGAGGGCAATGAAATG 59.622 55.000 0.00 0.00 0.00 2.32
778 798 0.748005 CCGGACGAGGGCAATGAAAT 60.748 55.000 0.00 0.00 0.00 2.17
779 799 1.376683 CCGGACGAGGGCAATGAAA 60.377 57.895 0.00 0.00 0.00 2.69
780 800 2.267642 CCGGACGAGGGCAATGAA 59.732 61.111 0.00 0.00 0.00 2.57
821 841 2.445438 GCTTGAGTACAGCGACGGC 61.445 63.158 0.00 0.00 40.37 5.68
823 843 0.710567 CAAGCTTGAGTACAGCGACG 59.289 55.000 22.31 0.00 0.00 5.12
900 920 3.562108 TGGGAAGAGTAGAAGGGAAGT 57.438 47.619 0.00 0.00 0.00 3.01
924 944 5.256389 AGAGTGGAGGGAGGGAATTTTAAAT 59.744 40.000 0.00 0.00 0.00 1.40
928 948 2.578480 GAGAGTGGAGGGAGGGAATTTT 59.422 50.000 0.00 0.00 0.00 1.82
951 971 4.398044 TCGTGGATGGAGAATTTAAAAGGC 59.602 41.667 0.00 0.00 0.00 4.35
1005 1025 2.215942 TGGTCGATTGAGAGTGGAGA 57.784 50.000 0.00 0.00 0.00 3.71
1034 1054 3.414700 GGACAGCGTGCACGAAGG 61.415 66.667 41.19 28.87 43.02 3.46
1040 1060 2.159819 GAGGAAGAGGACAGCGTGCA 62.160 60.000 0.00 0.00 0.00 4.57
1044 1064 1.515020 CAGGAGGAAGAGGACAGCG 59.485 63.158 0.00 0.00 0.00 5.18
1046 1066 2.031120 CTAGCAGGAGGAAGAGGACAG 58.969 57.143 0.00 0.00 0.00 3.51
1048 1068 0.750249 GCTAGCAGGAGGAAGAGGAC 59.250 60.000 10.63 0.00 0.00 3.85
1128 1151 4.508128 TCCTCGATCGCGGCAACC 62.508 66.667 19.30 0.00 38.28 3.77
1218 1249 2.439156 GAGCATGGGCCGAAGCTT 60.439 61.111 18.82 0.00 42.56 3.74
1342 1388 1.740025 GAGAACGGCAAGGGAAATCAG 59.260 52.381 0.00 0.00 0.00 2.90
1347 1393 1.292223 CTCGAGAACGGCAAGGGAA 59.708 57.895 6.58 0.00 40.21 3.97
1452 1499 2.434359 CCGTTTCTCCGTGGCTCC 60.434 66.667 0.00 0.00 0.00 4.70
1917 1993 2.889617 CCGCCGGTGTAGATGACA 59.110 61.111 15.14 0.00 34.94 3.58
1982 2058 1.731160 CGATATCGTAGGACGGGAGAC 59.269 57.143 17.06 0.00 42.81 3.36
2047 2123 1.068741 GGTCACTGACAGGTCGAACTT 59.931 52.381 0.00 0.00 33.68 2.66
2086 2162 1.519455 GGAGGTTGGCGTCGATGAG 60.519 63.158 9.31 0.00 0.00 2.90
2388 2464 4.640855 CCGCGGTCACTGACGTGT 62.641 66.667 19.50 0.00 41.89 4.49
2426 2502 2.669569 GGAAGCTCTGTTGCGCCA 60.670 61.111 4.18 0.00 38.13 5.69
2477 2553 0.662374 CGTGTACGAGCCGTTGAACT 60.662 55.000 5.57 0.00 41.54 3.01
2589 2668 4.094646 TCCACATCCACCGCGCAT 62.095 61.111 8.75 0.00 0.00 4.73
2595 2674 0.744414 CGTCCATGTCCACATCCACC 60.744 60.000 0.00 0.00 33.61 4.61
2599 2678 2.672961 TCTTCGTCCATGTCCACATC 57.327 50.000 0.00 0.00 33.61 3.06
2601 2680 1.001974 CCTTCTTCGTCCATGTCCACA 59.998 52.381 0.00 0.00 0.00 4.17
2608 2687 0.903454 ACGTCCCCTTCTTCGTCCAT 60.903 55.000 0.00 0.00 30.71 3.41
2616 2695 2.995574 CCGACCACGTCCCCTTCT 60.996 66.667 0.00 0.00 37.88 2.85
2657 2736 0.745845 GGTCGCCTCGTACCTGTAGA 60.746 60.000 0.00 0.00 32.72 2.59
2695 2774 2.372040 TAACCGCTGCTGGTCACGTT 62.372 55.000 14.68 4.06 42.89 3.99
2721 2800 0.526211 CGTCGGAATGGTCAGAGACA 59.474 55.000 0.00 0.00 33.68 3.41
2727 2806 0.682852 AAACCTCGTCGGAATGGTCA 59.317 50.000 0.00 0.00 36.31 4.02
2733 2812 1.952133 CACGCAAACCTCGTCGGAA 60.952 57.895 0.00 0.00 38.19 4.30
2813 2893 1.550327 TGGATCAGCTTCTCACGAGT 58.450 50.000 0.00 0.00 0.00 4.18
2833 2913 6.017026 CACGCTAGGATAGTCTAACAGATCAA 60.017 42.308 0.00 0.00 41.93 2.57
2836 2916 5.622180 TCACGCTAGGATAGTCTAACAGAT 58.378 41.667 0.00 0.00 41.93 2.90
2856 2936 7.812191 TCACATTTGCCATTGTTTTACTATCAC 59.188 33.333 0.00 0.00 0.00 3.06
2857 2937 7.890515 TCACATTTGCCATTGTTTTACTATCA 58.109 30.769 0.00 0.00 0.00 2.15
2858 2938 8.810427 CATCACATTTGCCATTGTTTTACTATC 58.190 33.333 0.00 0.00 0.00 2.08
2859 2939 7.278424 GCATCACATTTGCCATTGTTTTACTAT 59.722 33.333 0.00 0.00 33.95 2.12
2860 2940 6.589523 GCATCACATTTGCCATTGTTTTACTA 59.410 34.615 0.00 0.00 33.95 1.82
2861 2941 5.409214 GCATCACATTTGCCATTGTTTTACT 59.591 36.000 0.00 0.00 33.95 2.24
2873 2953 1.747355 AGTAGGCTGCATCACATTTGC 59.253 47.619 5.14 0.00 40.55 3.68
2877 2957 4.991056 CGTATAAAGTAGGCTGCATCACAT 59.009 41.667 5.14 0.00 0.00 3.21
2878 2958 4.098807 TCGTATAAAGTAGGCTGCATCACA 59.901 41.667 5.14 0.00 0.00 3.58
2879 2959 4.444720 GTCGTATAAAGTAGGCTGCATCAC 59.555 45.833 5.14 0.00 0.00 3.06
2880 2960 4.500887 GGTCGTATAAAGTAGGCTGCATCA 60.501 45.833 5.14 0.00 0.00 3.07
2881 2961 3.988517 GGTCGTATAAAGTAGGCTGCATC 59.011 47.826 5.14 0.00 0.00 3.91
2882 2962 3.552273 CGGTCGTATAAAGTAGGCTGCAT 60.552 47.826 5.14 0.00 0.00 3.96
2885 2965 2.034305 AGCGGTCGTATAAAGTAGGCTG 59.966 50.000 0.00 0.00 0.00 4.85
2886 2966 2.305009 AGCGGTCGTATAAAGTAGGCT 58.695 47.619 0.00 0.00 0.00 4.58
2889 2969 6.749118 ACTTGTTTAGCGGTCGTATAAAGTAG 59.251 38.462 0.00 0.00 0.00 2.57
2903 2983 9.820229 TTTCTGATTATTGTTACTTGTTTAGCG 57.180 29.630 0.00 0.00 0.00 4.26
2932 3012 8.147704 TCTTTCTGTTTGTCCTTTTGAAGTTTT 58.852 29.630 0.00 0.00 0.00 2.43
2935 3015 6.834168 TCTTTCTGTTTGTCCTTTTGAAGT 57.166 33.333 0.00 0.00 0.00 3.01
2938 3018 6.834168 ACTTCTTTCTGTTTGTCCTTTTGA 57.166 33.333 0.00 0.00 0.00 2.69
2944 3024 5.105917 TGTTCCAACTTCTTTCTGTTTGTCC 60.106 40.000 0.00 0.00 0.00 4.02
2947 3027 8.925161 TTATTGTTCCAACTTCTTTCTGTTTG 57.075 30.769 0.00 0.00 0.00 2.93
2977 3057 7.281991 TGATGACGCATCTCATTTATAATCG 57.718 36.000 16.93 0.00 41.06 3.34
2995 3075 6.571605 TCTCAGAGAGTGAAATCATGATGAC 58.428 40.000 9.46 6.80 33.60 3.06
2996 3076 6.786967 TCTCAGAGAGTGAAATCATGATGA 57.213 37.500 9.46 0.00 33.60 2.92
3008 3089 2.182827 TGGTCCCAATCTCAGAGAGTG 58.817 52.381 19.19 19.19 39.78 3.51
3009 3090 2.630889 TGGTCCCAATCTCAGAGAGT 57.369 50.000 6.24 0.00 0.00 3.24
3016 3097 3.085952 TGTTCCATTGGTCCCAATCTC 57.914 47.619 8.60 1.66 43.92 2.75
3018 3099 3.118665 CCATTGTTCCATTGGTCCCAATC 60.119 47.826 8.60 0.00 43.92 2.67
3020 3101 2.255406 CCATTGTTCCATTGGTCCCAA 58.745 47.619 1.86 0.39 40.47 4.12
3036 3121 2.317371 TGCCATTGGGTACAACCATT 57.683 45.000 4.53 0.00 41.02 3.16
3049 3134 0.607620 CAAACCCAACGGATGCCATT 59.392 50.000 0.00 0.00 0.00 3.16
3050 3135 1.257055 CCAAACCCAACGGATGCCAT 61.257 55.000 0.00 0.00 0.00 4.40
3051 3136 1.905843 CCAAACCCAACGGATGCCA 60.906 57.895 0.00 0.00 0.00 4.92
3052 3137 2.645192 CCCAAACCCAACGGATGCC 61.645 63.158 0.00 0.00 0.00 4.40
3053 3138 1.595093 CTCCCAAACCCAACGGATGC 61.595 60.000 0.00 0.00 0.00 3.91
3054 3139 0.965363 CCTCCCAAACCCAACGGATG 60.965 60.000 0.00 0.00 0.00 3.51
3055 3140 1.382629 CCTCCCAAACCCAACGGAT 59.617 57.895 0.00 0.00 0.00 4.18
3056 3141 2.836187 CCCTCCCAAACCCAACGGA 61.836 63.158 0.00 0.00 0.00 4.69
3057 3142 2.282887 CCCTCCCAAACCCAACGG 60.283 66.667 0.00 0.00 0.00 4.44
3058 3143 2.282887 CCCCTCCCAAACCCAACG 60.283 66.667 0.00 0.00 0.00 4.10
3059 3144 1.533033 CACCCCTCCCAAACCCAAC 60.533 63.158 0.00 0.00 0.00 3.77
3060 3145 2.784654 CCACCCCTCCCAAACCCAA 61.785 63.158 0.00 0.00 0.00 4.12
3061 3146 3.189646 CCACCCCTCCCAAACCCA 61.190 66.667 0.00 0.00 0.00 4.51
3062 3147 2.861974 TCCACCCCTCCCAAACCC 60.862 66.667 0.00 0.00 0.00 4.11
3063 3148 2.138453 GACTCCACCCCTCCCAAACC 62.138 65.000 0.00 0.00 0.00 3.27
3064 3149 1.379146 GACTCCACCCCTCCCAAAC 59.621 63.158 0.00 0.00 0.00 2.93
3065 3150 1.073319 TGACTCCACCCCTCCCAAA 60.073 57.895 0.00 0.00 0.00 3.28
3066 3151 1.846124 GTGACTCCACCCCTCCCAA 60.846 63.158 0.00 0.00 37.33 4.12
3067 3152 2.203938 GTGACTCCACCCCTCCCA 60.204 66.667 0.00 0.00 37.33 4.37
3068 3153 2.203938 TGTGACTCCACCCCTCCC 60.204 66.667 0.00 0.00 42.53 4.30
3069 3154 3.069778 GTGTGACTCCACCCCTCC 58.930 66.667 0.00 0.00 42.53 4.30
3075 3160 1.276622 AGGGTATGGTGTGACTCCAC 58.723 55.000 8.73 0.00 43.46 4.02
3076 3161 2.038863 AAGGGTATGGTGTGACTCCA 57.961 50.000 9.00 9.00 39.41 3.86
3077 3162 3.967987 AGATAAGGGTATGGTGTGACTCC 59.032 47.826 0.00 0.00 0.00 3.85
3078 3163 4.406003 ACAGATAAGGGTATGGTGTGACTC 59.594 45.833 0.00 0.00 0.00 3.36
3079 3164 4.362677 ACAGATAAGGGTATGGTGTGACT 58.637 43.478 0.00 0.00 0.00 3.41
3080 3165 4.406003 AGACAGATAAGGGTATGGTGTGAC 59.594 45.833 0.00 0.00 0.00 3.67
3081 3166 4.620723 AGACAGATAAGGGTATGGTGTGA 58.379 43.478 0.00 0.00 0.00 3.58
3082 3167 5.359194 AAGACAGATAAGGGTATGGTGTG 57.641 43.478 0.00 0.00 0.00 3.82
3083 3168 5.726793 AGAAAGACAGATAAGGGTATGGTGT 59.273 40.000 0.00 0.00 0.00 4.16
3084 3169 6.240549 AGAAAGACAGATAAGGGTATGGTG 57.759 41.667 0.00 0.00 0.00 4.17
3085 3170 6.893020 AAGAAAGACAGATAAGGGTATGGT 57.107 37.500 0.00 0.00 0.00 3.55
3086 3171 9.110502 GTTTAAGAAAGACAGATAAGGGTATGG 57.889 37.037 0.00 0.00 0.00 2.74
3087 3172 9.667107 TGTTTAAGAAAGACAGATAAGGGTATG 57.333 33.333 0.00 0.00 0.00 2.39
3090 3175 9.668497 GTATGTTTAAGAAAGACAGATAAGGGT 57.332 33.333 0.00 0.00 0.00 4.34
3091 3176 9.110502 GGTATGTTTAAGAAAGACAGATAAGGG 57.889 37.037 0.00 0.00 0.00 3.95
3092 3177 9.110502 GGGTATGTTTAAGAAAGACAGATAAGG 57.889 37.037 0.00 0.00 0.00 2.69
3093 3178 9.667107 TGGGTATGTTTAAGAAAGACAGATAAG 57.333 33.333 0.00 0.00 0.00 1.73
3095 3180 9.832445 GATGGGTATGTTTAAGAAAGACAGATA 57.168 33.333 0.00 0.00 0.00 1.98
3096 3181 8.328758 TGATGGGTATGTTTAAGAAAGACAGAT 58.671 33.333 0.00 0.00 0.00 2.90
3097 3182 7.606456 GTGATGGGTATGTTTAAGAAAGACAGA 59.394 37.037 0.00 0.00 0.00 3.41
3098 3183 7.607991 AGTGATGGGTATGTTTAAGAAAGACAG 59.392 37.037 0.00 0.00 0.00 3.51
3099 3184 7.458397 AGTGATGGGTATGTTTAAGAAAGACA 58.542 34.615 0.00 0.00 0.00 3.41
3100 3185 7.606456 TGAGTGATGGGTATGTTTAAGAAAGAC 59.394 37.037 0.00 0.00 0.00 3.01
3101 3186 7.685481 TGAGTGATGGGTATGTTTAAGAAAGA 58.315 34.615 0.00 0.00 0.00 2.52
3102 3187 7.921786 TGAGTGATGGGTATGTTTAAGAAAG 57.078 36.000 0.00 0.00 0.00 2.62
3105 3190 9.778741 GAATATGAGTGATGGGTATGTTTAAGA 57.221 33.333 0.00 0.00 0.00 2.10
3106 3191 9.559732 TGAATATGAGTGATGGGTATGTTTAAG 57.440 33.333 0.00 0.00 0.00 1.85
3109 3194 9.507329 GTATGAATATGAGTGATGGGTATGTTT 57.493 33.333 0.00 0.00 0.00 2.83
3110 3195 8.103305 GGTATGAATATGAGTGATGGGTATGTT 58.897 37.037 0.00 0.00 0.00 2.71
3111 3196 7.237471 TGGTATGAATATGAGTGATGGGTATGT 59.763 37.037 0.00 0.00 0.00 2.29
3112 3197 7.623630 TGGTATGAATATGAGTGATGGGTATG 58.376 38.462 0.00 0.00 0.00 2.39
3113 3198 7.582242 GCTGGTATGAATATGAGTGATGGGTAT 60.582 40.741 0.00 0.00 0.00 2.73
3114 3199 6.295859 GCTGGTATGAATATGAGTGATGGGTA 60.296 42.308 0.00 0.00 0.00 3.69
3115 3200 5.513788 GCTGGTATGAATATGAGTGATGGGT 60.514 44.000 0.00 0.00 0.00 4.51
3116 3201 4.940046 GCTGGTATGAATATGAGTGATGGG 59.060 45.833 0.00 0.00 0.00 4.00
3117 3202 5.554070 TGCTGGTATGAATATGAGTGATGG 58.446 41.667 0.00 0.00 0.00 3.51
3118 3203 7.361799 CCAATGCTGGTATGAATATGAGTGATG 60.362 40.741 0.00 0.00 38.00 3.07
3119 3204 6.657966 CCAATGCTGGTATGAATATGAGTGAT 59.342 38.462 0.00 0.00 38.00 3.06
3120 3205 5.999600 CCAATGCTGGTATGAATATGAGTGA 59.000 40.000 0.00 0.00 38.00 3.41
3121 3206 5.182570 CCCAATGCTGGTATGAATATGAGTG 59.817 44.000 0.00 0.00 41.72 3.51
3122 3207 5.319453 CCCAATGCTGGTATGAATATGAGT 58.681 41.667 0.00 0.00 41.72 3.41
3123 3208 4.703575 CCCCAATGCTGGTATGAATATGAG 59.296 45.833 0.00 0.00 41.72 2.90
3124 3209 4.353489 TCCCCAATGCTGGTATGAATATGA 59.647 41.667 0.00 0.00 41.72 2.15
3125 3210 4.665451 TCCCCAATGCTGGTATGAATATG 58.335 43.478 0.00 0.00 41.72 1.78
3126 3211 5.541258 ATCCCCAATGCTGGTATGAATAT 57.459 39.130 0.00 0.00 41.72 1.28
3127 3212 5.551583 ACTATCCCCAATGCTGGTATGAATA 59.448 40.000 0.00 0.00 41.72 1.75
3128 3213 3.909427 ATCCCCAATGCTGGTATGAAT 57.091 42.857 0.00 0.00 41.72 2.57
3129 3214 3.721575 ACTATCCCCAATGCTGGTATGAA 59.278 43.478 0.00 0.00 41.72 2.57
3130 3215 3.326521 ACTATCCCCAATGCTGGTATGA 58.673 45.455 0.00 0.00 41.72 2.15
3131 3216 3.795688 ACTATCCCCAATGCTGGTATG 57.204 47.619 0.00 0.00 41.72 2.39
3132 3217 4.814224 AAACTATCCCCAATGCTGGTAT 57.186 40.909 0.00 0.00 41.72 2.73
3133 3218 4.601406 AAAACTATCCCCAATGCTGGTA 57.399 40.909 0.00 0.00 41.72 3.25
3134 3219 3.473113 AAAACTATCCCCAATGCTGGT 57.527 42.857 0.00 0.00 41.72 4.00
3152 3237 4.073549 CTGGGTTACGGGTACATGAAAAA 58.926 43.478 0.00 0.00 0.00 1.94
3153 3238 3.677190 CTGGGTTACGGGTACATGAAAA 58.323 45.455 0.00 0.00 0.00 2.29
3154 3239 2.616001 GCTGGGTTACGGGTACATGAAA 60.616 50.000 0.00 0.00 0.00 2.69
3155 3240 1.065998 GCTGGGTTACGGGTACATGAA 60.066 52.381 0.00 0.00 0.00 2.57
3156 3241 0.538118 GCTGGGTTACGGGTACATGA 59.462 55.000 0.00 0.00 0.00 3.07
3157 3242 0.250793 TGCTGGGTTACGGGTACATG 59.749 55.000 0.00 0.00 0.00 3.21
3158 3243 1.140252 GATGCTGGGTTACGGGTACAT 59.860 52.381 0.00 0.00 0.00 2.29
3159 3244 0.538118 GATGCTGGGTTACGGGTACA 59.462 55.000 0.00 0.00 0.00 2.90
3160 3245 0.538118 TGATGCTGGGTTACGGGTAC 59.462 55.000 0.00 0.00 0.00 3.34
3161 3246 1.502690 ATGATGCTGGGTTACGGGTA 58.497 50.000 0.00 0.00 0.00 3.69
3162 3247 1.502690 TATGATGCTGGGTTACGGGT 58.497 50.000 0.00 0.00 0.00 5.28
3163 3248 2.631160 TTATGATGCTGGGTTACGGG 57.369 50.000 0.00 0.00 0.00 5.28
3164 3249 3.253188 CCATTTATGATGCTGGGTTACGG 59.747 47.826 0.00 0.00 0.00 4.02
3165 3250 3.253188 CCCATTTATGATGCTGGGTTACG 59.747 47.826 0.00 0.00 42.87 3.18
3166 3251 4.853924 CCCATTTATGATGCTGGGTTAC 57.146 45.455 0.00 0.00 42.87 2.50
3171 3256 1.342174 GGCACCCATTTATGATGCTGG 59.658 52.381 14.47 1.37 36.52 4.85
3172 3257 2.806608 GGCACCCATTTATGATGCTG 57.193 50.000 14.47 0.00 36.52 4.41
3187 3272 1.153920 CATTTTTACCCGCGGGCAC 60.154 57.895 43.58 0.00 39.32 5.01
3188 3273 2.995872 GCATTTTTACCCGCGGGCA 61.996 57.895 43.58 31.07 39.32 5.36
3189 3274 2.202690 GCATTTTTACCCGCGGGC 60.203 61.111 43.58 23.28 39.32 6.13
3190 3275 1.153920 GTGCATTTTTACCCGCGGG 60.154 57.895 42.17 42.17 42.03 6.13
3191 3276 0.731174 GTGTGCATTTTTACCCGCGG 60.731 55.000 21.04 21.04 0.00 6.46
3192 3277 0.039978 TGTGTGCATTTTTACCCGCG 60.040 50.000 0.00 0.00 0.00 6.46
3193 3278 2.141535 TTGTGTGCATTTTTACCCGC 57.858 45.000 0.00 0.00 0.00 6.13
3194 3279 3.120718 GCAATTGTGTGCATTTTTACCCG 60.121 43.478 7.40 0.00 44.29 5.28
3195 3280 4.403015 GCAATTGTGTGCATTTTTACCC 57.597 40.909 7.40 0.00 44.29 3.69
3205 3290 2.136728 TGATGCTTTGCAATTGTGTGC 58.863 42.857 7.40 7.48 43.62 4.57
3206 3291 5.351233 AATTGATGCTTTGCAATTGTGTG 57.649 34.783 7.40 0.00 43.62 3.82
3207 3292 5.527951 TCAAATTGATGCTTTGCAATTGTGT 59.472 32.000 7.40 0.00 43.62 3.72
3208 3293 5.991568 TCAAATTGATGCTTTGCAATTGTG 58.008 33.333 7.40 0.00 43.62 3.33
3209 3294 5.334569 GCTCAAATTGATGCTTTGCAATTGT 60.335 36.000 7.40 0.00 43.62 2.71
3210 3295 5.086058 GCTCAAATTGATGCTTTGCAATTG 58.914 37.500 0.00 0.00 43.62 2.32
3211 3296 4.757657 TGCTCAAATTGATGCTTTGCAATT 59.242 33.333 0.00 0.00 43.62 2.32
3212 3297 4.320023 TGCTCAAATTGATGCTTTGCAAT 58.680 34.783 0.00 0.00 43.62 3.56
3213 3298 3.729966 TGCTCAAATTGATGCTTTGCAA 58.270 36.364 14.85 0.00 43.62 4.08
3214 3299 3.322369 CTGCTCAAATTGATGCTTTGCA 58.678 40.909 14.85 10.57 44.86 4.08
3215 3300 2.093783 GCTGCTCAAATTGATGCTTTGC 59.906 45.455 14.85 7.16 34.36 3.68
3216 3301 2.671396 GGCTGCTCAAATTGATGCTTTG 59.329 45.455 14.85 8.75 35.41 2.77
3217 3302 2.354403 GGGCTGCTCAAATTGATGCTTT 60.354 45.455 14.85 0.00 0.00 3.51
3218 3303 1.206371 GGGCTGCTCAAATTGATGCTT 59.794 47.619 14.85 0.00 0.00 3.91
3219 3304 0.822164 GGGCTGCTCAAATTGATGCT 59.178 50.000 14.85 0.00 0.00 3.79
3220 3305 0.533491 TGGGCTGCTCAAATTGATGC 59.467 50.000 0.00 3.49 0.00 3.91
3221 3306 3.552273 GCTATGGGCTGCTCAAATTGATG 60.552 47.826 6.18 0.00 38.06 3.07
3222 3307 2.626743 GCTATGGGCTGCTCAAATTGAT 59.373 45.455 6.18 0.00 38.06 2.57
3223 3308 2.026641 GCTATGGGCTGCTCAAATTGA 58.973 47.619 6.18 0.00 38.06 2.57
3224 3309 1.068127 GGCTATGGGCTGCTCAAATTG 59.932 52.381 6.18 0.00 41.46 2.32
3225 3310 1.342275 TGGCTATGGGCTGCTCAAATT 60.342 47.619 6.18 0.00 41.46 1.82
3226 3311 0.259647 TGGCTATGGGCTGCTCAAAT 59.740 50.000 6.18 0.00 41.46 2.32
3227 3312 0.259647 ATGGCTATGGGCTGCTCAAA 59.740 50.000 6.18 0.00 41.46 2.69
3228 3313 1.139439 TATGGCTATGGGCTGCTCAA 58.861 50.000 6.18 0.00 41.46 3.02
3229 3314 1.139439 TTATGGCTATGGGCTGCTCA 58.861 50.000 3.90 3.90 41.46 4.26
3230 3315 2.276732 TTTATGGCTATGGGCTGCTC 57.723 50.000 3.83 0.00 41.46 4.26
3231 3316 2.754012 TTTTATGGCTATGGGCTGCT 57.246 45.000 3.83 0.00 41.46 4.24
3267 3352 9.342308 CCATCATGGTCTAGTTGTTTACATATT 57.658 33.333 0.00 0.00 31.35 1.28
3268 3353 7.445402 GCCATCATGGTCTAGTTGTTTACATAT 59.555 37.037 5.31 0.00 40.46 1.78
3269 3354 6.765989 GCCATCATGGTCTAGTTGTTTACATA 59.234 38.462 5.31 0.00 40.46 2.29
3270 3355 5.590259 GCCATCATGGTCTAGTTGTTTACAT 59.410 40.000 5.31 0.00 40.46 2.29
3271 3356 4.941263 GCCATCATGGTCTAGTTGTTTACA 59.059 41.667 5.31 0.00 40.46 2.41
3272 3357 4.034048 CGCCATCATGGTCTAGTTGTTTAC 59.966 45.833 5.31 0.00 40.46 2.01
3273 3358 4.188462 CGCCATCATGGTCTAGTTGTTTA 58.812 43.478 5.31 0.00 40.46 2.01
3274 3359 3.009723 CGCCATCATGGTCTAGTTGTTT 58.990 45.455 5.31 0.00 40.46 2.83
3275 3360 2.632377 CGCCATCATGGTCTAGTTGTT 58.368 47.619 5.31 0.00 40.46 2.83
3276 3361 1.743772 GCGCCATCATGGTCTAGTTGT 60.744 52.381 5.31 0.00 40.46 3.32
3277 3362 0.940126 GCGCCATCATGGTCTAGTTG 59.060 55.000 5.31 0.00 40.46 3.16
3278 3363 0.530650 CGCGCCATCATGGTCTAGTT 60.531 55.000 5.31 0.00 40.46 2.24
3483 3569 6.884096 TGCAAGTTGTACTTCAATTTTGTG 57.116 33.333 4.48 0.00 36.03 3.33
3490 3576 7.609918 ACATATACCATGCAAGTTGTACTTCAA 59.390 33.333 4.48 0.00 36.03 2.69
3572 3658 0.960364 GGCACAAGAAATCCTGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
3576 3662 1.467920 GGGAGGCACAAGAAATCCTG 58.532 55.000 0.00 0.00 0.00 3.86
3612 3698 4.135153 CACAGGAGACGAGGCGGG 62.135 72.222 0.00 0.00 0.00 6.13
3731 3817 1.157585 CGTTGTCTCGTCTCTCTGGA 58.842 55.000 0.00 0.00 0.00 3.86
3740 3826 3.939592 TCAGAGATACATCGTTGTCTCGT 59.060 43.478 1.61 0.00 37.28 4.18
3745 3831 5.360999 TCCATCTTCAGAGATACATCGTTGT 59.639 40.000 4.29 4.29 40.67 3.32
3748 3834 6.471233 TTTCCATCTTCAGAGATACATCGT 57.529 37.500 0.00 0.00 40.67 3.73
3771 3857 5.222254 TGGGGACTAGGCAGAAATAACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
3778 3864 1.777272 GGATGGGGACTAGGCAGAAAT 59.223 52.381 0.00 0.00 0.00 2.17
3795 3881 0.978146 ACTAGAAGCACCGCCAGGAT 60.978 55.000 0.00 0.00 41.02 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.