Multiple sequence alignment - TraesCS3A01G131600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G131600 chr3A 100.000 2657 0 0 1 2657 108032015 108034671 0.000000e+00 4907.0
1 TraesCS3A01G131600 chr2A 99.266 681 5 0 1 681 488003451 488004131 0.000000e+00 1230.0
2 TraesCS3A01G131600 chr2A 91.038 212 15 4 2159 2368 687994449 687994658 1.560000e-72 283.0
3 TraesCS3A01G131600 chr2A 90.952 210 19 0 2159 2368 690246591 690246800 1.560000e-72 283.0
4 TraesCS3A01G131600 chr5B 97.507 682 16 1 1 681 633679685 633679004 0.000000e+00 1164.0
5 TraesCS3A01G131600 chr5B 90.995 211 18 1 2159 2368 55697771 55697981 1.560000e-72 283.0
6 TraesCS3A01G131600 chr2B 96.774 682 21 1 1 681 31581538 31580857 0.000000e+00 1136.0
7 TraesCS3A01G131600 chr2B 90.047 211 20 1 2159 2369 82005398 82005607 3.370000e-69 272.0
8 TraesCS3A01G131600 chr6D 96.481 682 23 1 1 681 456280492 456281173 0.000000e+00 1125.0
9 TraesCS3A01G131600 chr6D 96.334 682 23 2 1 681 38361811 38362491 0.000000e+00 1120.0
10 TraesCS3A01G131600 chr6D 95.455 682 30 1 1 681 365448837 365448156 0.000000e+00 1086.0
11 TraesCS3A01G131600 chr6D 90.000 210 21 0 2159 2368 279443323 279443532 3.370000e-69 272.0
12 TraesCS3A01G131600 chr1B 95.894 682 26 2 1 681 563682371 563681691 0.000000e+00 1103.0
13 TraesCS3A01G131600 chr1B 90.777 206 18 1 2165 2370 334814595 334814391 9.370000e-70 274.0
14 TraesCS3A01G131600 chr1D 94.868 682 34 1 1 681 457075104 457075785 0.000000e+00 1064.0
15 TraesCS3A01G131600 chr6A 93.109 682 44 2 1 681 133796712 133797391 0.000000e+00 996.0
16 TraesCS3A01G131600 chr6A 89.671 213 21 1 2159 2371 31973460 31973249 1.210000e-68 270.0
17 TraesCS3A01G131600 chr3B 90.826 545 34 6 1354 1895 163295827 163296358 0.000000e+00 715.0
18 TraesCS3A01G131600 chr3B 86.688 631 66 9 685 1310 163295089 163295706 0.000000e+00 684.0
19 TraesCS3A01G131600 chr3B 92.042 289 19 3 2369 2657 163300061 163300345 1.150000e-108 403.0
20 TraesCS3A01G131600 chr3D 92.431 436 32 1 836 1271 112398223 112398657 2.900000e-174 621.0
21 TraesCS3A01G131600 chr3D 93.151 292 18 2 2367 2657 112399636 112399926 6.800000e-116 427.0
22 TraesCS3A01G131600 chr3D 91.447 304 26 0 1339 1642 112398674 112398977 4.090000e-113 418.0
23 TraesCS3A01G131600 chr3D 90.625 256 10 4 1685 1939 112398978 112399220 7.090000e-86 327.0
24 TraesCS3A01G131600 chr3D 86.228 167 20 3 1943 2106 593450955 593451121 7.560000e-41 178.0
25 TraesCS3A01G131600 chr3D 87.826 115 13 1 824 938 10581352 10581465 1.660000e-27 134.0
26 TraesCS3A01G131600 chr1A 90.000 210 20 1 2159 2368 12965077 12965285 1.210000e-68 270.0
27 TraesCS3A01G131600 chr6B 89.524 210 21 1 2159 2368 152400057 152400265 5.640000e-67 265.0
28 TraesCS3A01G131600 chr5A 86.047 172 20 2 1943 2110 590054411 590054582 5.840000e-42 182.0
29 TraesCS3A01G131600 chr5A 86.164 159 18 2 1943 2097 589889076 589889234 4.550000e-38 169.0
30 TraesCS3A01G131600 chr4B 81.657 169 20 5 1941 2106 4181360 4181520 2.150000e-26 130.0
31 TraesCS3A01G131600 chr4A 89.062 64 7 0 2049 2112 626303408 626303345 2.190000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G131600 chr3A 108032015 108034671 2656 False 4907.000000 4907 100.0000 1 2657 1 chr3A.!!$F1 2656
1 TraesCS3A01G131600 chr2A 488003451 488004131 680 False 1230.000000 1230 99.2660 1 681 1 chr2A.!!$F1 680
2 TraesCS3A01G131600 chr5B 633679004 633679685 681 True 1164.000000 1164 97.5070 1 681 1 chr5B.!!$R1 680
3 TraesCS3A01G131600 chr2B 31580857 31581538 681 True 1136.000000 1136 96.7740 1 681 1 chr2B.!!$R1 680
4 TraesCS3A01G131600 chr6D 456280492 456281173 681 False 1125.000000 1125 96.4810 1 681 1 chr6D.!!$F3 680
5 TraesCS3A01G131600 chr6D 38361811 38362491 680 False 1120.000000 1120 96.3340 1 681 1 chr6D.!!$F1 680
6 TraesCS3A01G131600 chr6D 365448156 365448837 681 True 1086.000000 1086 95.4550 1 681 1 chr6D.!!$R1 680
7 TraesCS3A01G131600 chr1B 563681691 563682371 680 True 1103.000000 1103 95.8940 1 681 1 chr1B.!!$R2 680
8 TraesCS3A01G131600 chr1D 457075104 457075785 681 False 1064.000000 1064 94.8680 1 681 1 chr1D.!!$F1 680
9 TraesCS3A01G131600 chr6A 133796712 133797391 679 False 996.000000 996 93.1090 1 681 1 chr6A.!!$F1 680
10 TraesCS3A01G131600 chr3B 163295089 163300345 5256 False 600.666667 715 89.8520 685 2657 3 chr3B.!!$F1 1972
11 TraesCS3A01G131600 chr3D 112398223 112399926 1703 False 448.250000 621 91.9135 836 2657 4 chr3D.!!$F3 1821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 794 0.846693 ACCCCTTGTTTGAGTCTGCT 59.153 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 4138 0.041047 AAAACGTTTAGGCGCCGTTC 60.041 50.0 23.2 12.1 43.32 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
682 686 8.964476 TGAAACTCTAACAGAATCTTTTGAGT 57.036 30.769 12.38 12.38 38.80 3.41
683 687 9.396022 TGAAACTCTAACAGAATCTTTTGAGTT 57.604 29.630 18.50 18.50 44.40 3.01
688 692 7.162082 TCTAACAGAATCTTTTGAGTTCCCTC 58.838 38.462 0.00 0.00 38.27 4.30
690 694 3.126000 CAGAATCTTTTGAGTTCCCTCGC 59.874 47.826 0.00 0.00 40.85 5.03
719 723 6.442564 TCCAGTGTTCCAGGTACATTATAACT 59.557 38.462 1.66 0.00 0.00 2.24
721 725 7.280205 CCAGTGTTCCAGGTACATTATAACTTC 59.720 40.741 1.66 0.00 0.00 3.01
722 726 8.041323 CAGTGTTCCAGGTACATTATAACTTCT 58.959 37.037 1.66 0.00 0.00 2.85
723 727 9.263446 AGTGTTCCAGGTACATTATAACTTCTA 57.737 33.333 1.66 0.00 0.00 2.10
753 757 4.847757 CGTGCTACAAGTTGATTCAACATG 59.152 41.667 26.73 25.99 45.66 3.21
757 761 6.024049 GCTACAAGTTGATTCAACATGCTAC 58.976 40.000 26.33 15.84 43.81 3.58
759 763 6.005583 ACAAGTTGATTCAACATGCTACAG 57.994 37.500 26.33 9.37 43.81 2.74
760 764 5.532406 ACAAGTTGATTCAACATGCTACAGT 59.468 36.000 26.33 9.94 43.81 3.55
762 766 6.974932 AGTTGATTCAACATGCTACAGTAG 57.025 37.500 26.73 2.85 45.66 2.57
763 767 6.701340 AGTTGATTCAACATGCTACAGTAGA 58.299 36.000 26.73 0.00 45.66 2.59
766 770 7.117285 TGATTCAACATGCTACAGTAGATCT 57.883 36.000 12.15 0.00 0.00 2.75
767 771 8.237811 TGATTCAACATGCTACAGTAGATCTA 57.762 34.615 12.15 0.00 0.00 1.98
769 773 9.138062 GATTCAACATGCTACAGTAGATCTATG 57.862 37.037 12.15 11.13 0.00 2.23
771 775 8.691661 TCAACATGCTACAGTAGATCTATGTA 57.308 34.615 12.15 13.29 0.00 2.29
772 776 8.568794 TCAACATGCTACAGTAGATCTATGTAC 58.431 37.037 12.15 10.14 0.00 2.90
773 777 7.455641 ACATGCTACAGTAGATCTATGTACC 57.544 40.000 12.15 7.82 0.00 3.34
774 778 6.434652 ACATGCTACAGTAGATCTATGTACCC 59.565 42.308 12.15 7.94 0.00 3.69
775 779 5.322754 TGCTACAGTAGATCTATGTACCCC 58.677 45.833 12.15 6.07 0.00 4.95
776 780 5.074652 TGCTACAGTAGATCTATGTACCCCT 59.925 44.000 12.15 0.00 0.00 4.79
777 781 6.011481 GCTACAGTAGATCTATGTACCCCTT 58.989 44.000 12.15 0.00 0.00 3.95
778 782 6.071840 GCTACAGTAGATCTATGTACCCCTTG 60.072 46.154 12.15 4.82 0.00 3.61
781 785 6.672657 ACAGTAGATCTATGTACCCCTTGTTT 59.327 38.462 5.57 0.00 0.00 2.83
782 786 6.986817 CAGTAGATCTATGTACCCCTTGTTTG 59.013 42.308 5.57 0.00 0.00 2.93
784 788 6.240549 AGATCTATGTACCCCTTGTTTGAG 57.759 41.667 0.00 0.00 0.00 3.02
789 793 2.152016 GTACCCCTTGTTTGAGTCTGC 58.848 52.381 0.00 0.00 0.00 4.26
790 794 0.846693 ACCCCTTGTTTGAGTCTGCT 59.153 50.000 0.00 0.00 0.00 4.24
800 804 0.970427 TGAGTCTGCTCCGCATGGTA 60.970 55.000 0.00 0.00 40.95 3.25
802 806 1.878522 GTCTGCTCCGCATGGTACG 60.879 63.158 0.00 0.00 38.13 3.67
803 807 3.264897 CTGCTCCGCATGGTACGC 61.265 66.667 0.00 0.00 38.13 4.42
834 838 2.001812 CAGGACATCTGGTCTGTTCG 57.998 55.000 0.00 0.00 46.16 3.95
864 868 0.955919 GCAACCTCCCGGACAAGAAG 60.956 60.000 0.73 0.00 0.00 2.85
866 870 0.977395 AACCTCCCGGACAAGAAGAG 59.023 55.000 0.73 0.00 0.00 2.85
870 874 1.376037 CCCGGACAAGAAGAGGTGC 60.376 63.158 0.73 0.00 0.00 5.01
871 875 1.738099 CCGGACAAGAAGAGGTGCG 60.738 63.158 0.00 0.00 46.43 5.34
969 973 2.390599 CCTGCAATCCGTCCGTGTG 61.391 63.158 0.00 0.00 0.00 3.82
1003 1007 1.974875 TGCAGTGCAGCCAAGATGG 60.975 57.895 15.37 0.00 35.22 3.51
1078 1082 1.734477 CAGAAGCAGGGACGTGTCG 60.734 63.158 0.00 0.00 0.00 4.35
1158 1162 3.231222 CGACCGTATCGTGAAGGTC 57.769 57.895 12.07 12.07 46.25 3.85
1161 1165 0.449388 ACCGTATCGTGAAGGTCGTC 59.551 55.000 0.00 0.00 29.76 4.20
1198 1202 2.161486 GTCGACGCCATCTCAGTGC 61.161 63.158 0.00 0.00 0.00 4.40
1271 1275 1.226435 GACAGCGCTCAGAGGTACG 60.226 63.158 7.13 0.00 0.00 3.67
1273 1277 1.515088 CAGCGCTCAGAGGTACGTG 60.515 63.158 7.13 0.00 0.00 4.49
1274 1278 2.881352 GCGCTCAGAGGTACGTGC 60.881 66.667 0.00 0.00 0.00 5.34
1279 1283 1.107114 CTCAGAGGTACGTGCTCCAT 58.893 55.000 3.01 0.00 0.00 3.41
1280 1284 1.478510 CTCAGAGGTACGTGCTCCATT 59.521 52.381 3.01 0.00 0.00 3.16
1283 1287 3.512329 TCAGAGGTACGTGCTCCATTAAA 59.488 43.478 3.01 0.00 0.00 1.52
1285 1289 4.876107 CAGAGGTACGTGCTCCATTAAATT 59.124 41.667 3.01 0.00 0.00 1.82
1286 1290 5.354234 CAGAGGTACGTGCTCCATTAAATTT 59.646 40.000 3.01 0.00 0.00 1.82
1316 1336 4.730949 ATAAATTGATGCTGTGCTGCTT 57.269 36.364 0.00 0.00 0.00 3.91
1326 1346 3.181476 TGCTGTGCTGCTTCTTATATCGA 60.181 43.478 0.00 0.00 0.00 3.59
1328 1348 4.450419 GCTGTGCTGCTTCTTATATCGATT 59.550 41.667 1.71 0.00 0.00 3.34
1335 1355 8.124823 TGCTGCTTCTTATATCGATTTCTTTTG 58.875 33.333 1.71 0.00 0.00 2.44
1392 1475 4.838152 TGCGGCGATGAAGCTCCC 62.838 66.667 12.98 0.00 37.29 4.30
1403 1486 3.085952 TGAAGCTCCCTTGGTTTATGG 57.914 47.619 0.00 0.00 0.00 2.74
1433 1516 3.157252 GATCTGCCTGGAGCCGGA 61.157 66.667 5.05 0.00 42.71 5.14
1444 1527 1.048601 GGAGCCGGATGAATACCTCA 58.951 55.000 5.05 0.00 38.81 3.86
1482 1565 1.603326 CTTGGCAATTTTGGTGGTTGC 59.397 47.619 0.00 0.97 45.54 4.17
1506 1589 4.172807 TCCTCTTGGGAAGGCTTACTTTA 58.827 43.478 9.79 0.00 41.91 1.85
1510 1593 5.183228 TCTTGGGAAGGCTTACTTTAATCG 58.817 41.667 9.79 0.00 40.21 3.34
1543 1626 0.385390 CTTTGGGCCATATGGAACGC 59.615 55.000 26.47 16.41 37.39 4.84
1563 1646 1.146263 GGAAGGTCCGCCATTCGAT 59.854 57.895 0.00 0.00 41.67 3.59
1569 1652 0.880718 GTCCGCCATTCGATCTTCCC 60.881 60.000 0.00 0.00 41.67 3.97
1593 1676 1.526575 CTGGCGGCAAGATTGTTGGT 61.527 55.000 14.48 0.00 0.00 3.67
1694 1777 5.084519 TCTAGGCCATTGGTCGATATTACT 58.915 41.667 5.01 0.00 29.39 2.24
1775 1858 7.596248 ACGCATGAGCAAATCCATATATTTTTC 59.404 33.333 0.00 0.00 42.27 2.29
1788 1872 9.639563 TCCATATATTTTTCCTTCTGCATGTTA 57.360 29.630 0.00 0.00 0.00 2.41
1790 1874 9.683069 CATATATTTTTCCTTCTGCATGTTACC 57.317 33.333 0.00 0.00 0.00 2.85
1791 1875 7.716799 ATATTTTTCCTTCTGCATGTTACCA 57.283 32.000 0.00 0.00 0.00 3.25
1792 1876 6.610075 ATTTTTCCTTCTGCATGTTACCAT 57.390 33.333 0.00 0.00 0.00 3.55
1793 1877 7.716799 ATTTTTCCTTCTGCATGTTACCATA 57.283 32.000 0.00 0.00 0.00 2.74
1794 1878 6.509418 TTTTCCTTCTGCATGTTACCATAC 57.491 37.500 0.00 0.00 0.00 2.39
1795 1879 4.150897 TCCTTCTGCATGTTACCATACC 57.849 45.455 0.00 0.00 0.00 2.73
1801 1885 3.605634 TGCATGTTACCATACCAGACAC 58.394 45.455 0.00 0.00 0.00 3.67
1817 1901 1.089481 ACACGTGCCTCTTGTGTGTG 61.089 55.000 17.22 0.00 44.59 3.82
1818 1902 1.089481 CACGTGCCTCTTGTGTGTGT 61.089 55.000 0.82 0.00 0.00 3.72
1819 1903 1.089481 ACGTGCCTCTTGTGTGTGTG 61.089 55.000 0.00 0.00 0.00 3.82
1820 1904 1.089481 CGTGCCTCTTGTGTGTGTGT 61.089 55.000 0.00 0.00 0.00 3.72
1821 1905 0.378257 GTGCCTCTTGTGTGTGTGTG 59.622 55.000 0.00 0.00 0.00 3.82
1822 1906 0.035534 TGCCTCTTGTGTGTGTGTGT 60.036 50.000 0.00 0.00 0.00 3.72
1823 1907 0.378257 GCCTCTTGTGTGTGTGTGTG 59.622 55.000 0.00 0.00 0.00 3.82
1824 1908 1.737838 CCTCTTGTGTGTGTGTGTGT 58.262 50.000 0.00 0.00 0.00 3.72
1943 2111 7.601856 TCCAGCTACAAACAAAATTAATGAGG 58.398 34.615 0.00 0.00 0.00 3.86
1944 2112 7.232534 TCCAGCTACAAACAAAATTAATGAGGT 59.767 33.333 0.00 0.00 0.00 3.85
1945 2113 7.329226 CCAGCTACAAACAAAATTAATGAGGTG 59.671 37.037 0.00 0.00 0.00 4.00
1946 2114 7.867403 CAGCTACAAACAAAATTAATGAGGTGT 59.133 33.333 0.00 0.00 0.00 4.16
1947 2115 8.421002 AGCTACAAACAAAATTAATGAGGTGTT 58.579 29.630 0.00 0.00 0.00 3.32
1948 2116 9.040939 GCTACAAACAAAATTAATGAGGTGTTT 57.959 29.630 10.76 10.76 39.18 2.83
1958 2126 9.927668 AAATTAATGAGGTGTTTGATTACAAGG 57.072 29.630 0.00 0.00 37.32 3.61
1959 2127 5.982890 AATGAGGTGTTTGATTACAAGGG 57.017 39.130 0.00 0.00 37.32 3.95
1960 2128 4.715534 TGAGGTGTTTGATTACAAGGGA 57.284 40.909 0.00 0.00 37.32 4.20
1961 2129 4.394729 TGAGGTGTTTGATTACAAGGGAC 58.605 43.478 0.00 0.00 37.32 4.46
1963 2131 5.308497 TGAGGTGTTTGATTACAAGGGACTA 59.692 40.000 0.00 0.00 38.49 2.59
1964 2132 5.805728 AGGTGTTTGATTACAAGGGACTAG 58.194 41.667 0.00 0.00 38.49 2.57
1965 2133 5.546499 AGGTGTTTGATTACAAGGGACTAGA 59.454 40.000 0.00 0.00 38.49 2.43
1966 2134 5.642491 GGTGTTTGATTACAAGGGACTAGAC 59.358 44.000 0.00 0.00 38.49 2.59
1967 2135 6.465084 GTGTTTGATTACAAGGGACTAGACT 58.535 40.000 0.00 0.00 38.49 3.24
1968 2136 6.935208 GTGTTTGATTACAAGGGACTAGACTT 59.065 38.462 0.00 0.00 38.49 3.01
1969 2137 7.444487 GTGTTTGATTACAAGGGACTAGACTTT 59.556 37.037 0.00 0.00 38.49 2.66
1970 2138 7.996644 TGTTTGATTACAAGGGACTAGACTTTT 59.003 33.333 0.00 0.00 38.49 2.27
1971 2139 8.847196 GTTTGATTACAAGGGACTAGACTTTTT 58.153 33.333 0.00 0.00 38.49 1.94
2020 2188 9.536510 AAATACCTTTCAGTAGAGTCTTCTAGT 57.463 33.333 0.00 0.00 39.62 2.57
2021 2189 8.741603 ATACCTTTCAGTAGAGTCTTCTAGTC 57.258 38.462 0.00 0.00 37.45 2.59
2022 2190 5.947566 ACCTTTCAGTAGAGTCTTCTAGTCC 59.052 44.000 0.00 0.00 37.45 3.85
2023 2191 5.358725 CCTTTCAGTAGAGTCTTCTAGTCCC 59.641 48.000 0.00 0.00 37.45 4.46
2024 2192 5.782677 TTCAGTAGAGTCTTCTAGTCCCT 57.217 43.478 0.00 0.00 37.45 4.20
2025 2193 6.887886 TTCAGTAGAGTCTTCTAGTCCCTA 57.112 41.667 0.00 0.00 37.45 3.53
2026 2194 6.887886 TCAGTAGAGTCTTCTAGTCCCTAA 57.112 41.667 0.00 0.00 37.45 2.69
2027 2195 7.268212 TCAGTAGAGTCTTCTAGTCCCTAAA 57.732 40.000 0.00 0.00 37.45 1.85
2028 2196 7.340256 TCAGTAGAGTCTTCTAGTCCCTAAAG 58.660 42.308 0.00 0.00 37.45 1.85
2029 2197 7.182387 TCAGTAGAGTCTTCTAGTCCCTAAAGA 59.818 40.741 0.00 0.00 37.45 2.52
2030 2198 7.830201 CAGTAGAGTCTTCTAGTCCCTAAAGAA 59.170 40.741 0.00 0.00 37.45 2.52
2031 2199 8.392479 AGTAGAGTCTTCTAGTCCCTAAAGAAA 58.608 37.037 0.00 0.00 35.12 2.52
2032 2200 9.022884 GTAGAGTCTTCTAGTCCCTAAAGAAAA 57.977 37.037 0.00 0.00 36.61 2.29
2033 2201 8.129496 AGAGTCTTCTAGTCCCTAAAGAAAAG 57.871 38.462 0.00 0.00 30.10 2.27
2034 2202 7.731235 AGAGTCTTCTAGTCCCTAAAGAAAAGT 59.269 37.037 0.00 0.00 30.10 2.66
2035 2203 7.898918 AGTCTTCTAGTCCCTAAAGAAAAGTC 58.101 38.462 0.00 0.00 30.10 3.01
2036 2204 7.038870 AGTCTTCTAGTCCCTAAAGAAAAGTCC 60.039 40.741 0.00 0.00 30.10 3.85
2037 2205 6.212993 TCTTCTAGTCCCTAAAGAAAAGTCCC 59.787 42.308 0.00 0.00 0.00 4.46
2038 2206 5.662597 TCTAGTCCCTAAAGAAAAGTCCCT 58.337 41.667 0.00 0.00 0.00 4.20
2039 2207 6.089502 TCTAGTCCCTAAAGAAAAGTCCCTT 58.910 40.000 0.00 0.00 0.00 3.95
2040 2208 5.244189 AGTCCCTAAAGAAAAGTCCCTTC 57.756 43.478 0.00 0.00 0.00 3.46
2041 2209 4.914581 AGTCCCTAAAGAAAAGTCCCTTCT 59.085 41.667 0.00 0.00 34.56 2.85
2042 2210 5.004448 GTCCCTAAAGAAAAGTCCCTTCTG 58.996 45.833 0.00 0.00 33.40 3.02
2043 2211 4.663592 TCCCTAAAGAAAAGTCCCTTCTGT 59.336 41.667 0.00 0.00 33.40 3.41
2044 2212 5.133830 TCCCTAAAGAAAAGTCCCTTCTGTT 59.866 40.000 0.00 0.00 33.40 3.16
2045 2213 5.833667 CCCTAAAGAAAAGTCCCTTCTGTTT 59.166 40.000 0.00 0.00 33.40 2.83
2046 2214 6.239036 CCCTAAAGAAAAGTCCCTTCTGTTTG 60.239 42.308 0.00 0.00 33.40 2.93
2047 2215 6.546034 CCTAAAGAAAAGTCCCTTCTGTTTGA 59.454 38.462 0.00 0.00 33.40 2.69
2048 2216 7.231519 CCTAAAGAAAAGTCCCTTCTGTTTGAT 59.768 37.037 0.00 0.00 33.40 2.57
2049 2217 7.423844 AAAGAAAAGTCCCTTCTGTTTGATT 57.576 32.000 0.00 0.00 33.40 2.57
2050 2218 8.533569 AAAGAAAAGTCCCTTCTGTTTGATTA 57.466 30.769 0.00 0.00 33.40 1.75
2051 2219 7.511959 AGAAAAGTCCCTTCTGTTTGATTAC 57.488 36.000 0.00 0.00 31.86 1.89
2052 2220 7.060421 AGAAAAGTCCCTTCTGTTTGATTACA 58.940 34.615 0.00 0.00 31.86 2.41
2053 2221 7.725844 AGAAAAGTCCCTTCTGTTTGATTACAT 59.274 33.333 0.00 0.00 31.86 2.29
2054 2222 8.934023 AAAAGTCCCTTCTGTTTGATTACATA 57.066 30.769 0.00 0.00 0.00 2.29
2055 2223 8.567285 AAAGTCCCTTCTGTTTGATTACATAG 57.433 34.615 0.00 0.00 0.00 2.23
2056 2224 6.653989 AGTCCCTTCTGTTTGATTACATAGG 58.346 40.000 0.00 0.00 33.14 2.57
2057 2225 5.823045 GTCCCTTCTGTTTGATTACATAGGG 59.177 44.000 13.69 13.69 43.96 3.53
2058 2226 5.729229 TCCCTTCTGTTTGATTACATAGGGA 59.271 40.000 16.56 16.56 46.23 4.20
2059 2227 6.389869 TCCCTTCTGTTTGATTACATAGGGAT 59.610 38.462 16.56 0.00 45.01 3.85
2060 2228 7.062957 CCCTTCTGTTTGATTACATAGGGATT 58.937 38.462 14.30 0.00 44.63 3.01
2061 2229 8.217799 CCCTTCTGTTTGATTACATAGGGATTA 58.782 37.037 14.30 0.00 44.63 1.75
2062 2230 9.627123 CCTTCTGTTTGATTACATAGGGATTAA 57.373 33.333 0.00 0.00 31.29 1.40
2067 2235 9.983024 TGTTTGATTACATAGGGATTAAAAGGA 57.017 29.630 0.00 0.00 0.00 3.36
2095 2263 7.844493 TTTTCTAGTCTAGTCCTTGTAACCA 57.156 36.000 6.77 0.00 0.00 3.67
2096 2264 7.844493 TTTCTAGTCTAGTCCTTGTAACCAA 57.156 36.000 6.77 0.00 0.00 3.67
2097 2265 7.844493 TTCTAGTCTAGTCCTTGTAACCAAA 57.156 36.000 6.77 0.00 0.00 3.28
2098 2266 7.224522 TCTAGTCTAGTCCTTGTAACCAAAC 57.775 40.000 6.77 0.00 0.00 2.93
2099 2267 5.881923 AGTCTAGTCCTTGTAACCAAACA 57.118 39.130 0.00 0.00 0.00 2.83
2100 2268 5.855045 AGTCTAGTCCTTGTAACCAAACAG 58.145 41.667 0.00 0.00 0.00 3.16
2101 2269 4.995487 GTCTAGTCCTTGTAACCAAACAGG 59.005 45.833 0.00 0.00 45.67 4.00
2102 2270 3.223674 AGTCCTTGTAACCAAACAGGG 57.776 47.619 0.00 0.00 45.51 4.45
2103 2271 1.611977 GTCCTTGTAACCAAACAGGGC 59.388 52.381 0.59 0.00 44.20 5.19
2104 2272 0.966179 CCTTGTAACCAAACAGGGCC 59.034 55.000 0.00 0.00 39.44 5.80
2105 2273 1.480498 CCTTGTAACCAAACAGGGCCT 60.480 52.381 0.00 0.00 39.44 5.19
2106 2274 2.224917 CCTTGTAACCAAACAGGGCCTA 60.225 50.000 5.28 0.00 39.44 3.93
2107 2275 3.492337 CTTGTAACCAAACAGGGCCTAA 58.508 45.455 5.28 0.00 43.89 2.69
2115 2283 2.740447 CAAACAGGGCCTAAGTAACGTC 59.260 50.000 5.28 0.00 0.00 4.34
2120 2288 3.635373 CAGGGCCTAAGTAACGTCTATGA 59.365 47.826 5.28 0.00 0.00 2.15
2121 2289 4.281182 CAGGGCCTAAGTAACGTCTATGAT 59.719 45.833 5.28 0.00 0.00 2.45
2122 2290 4.900054 AGGGCCTAAGTAACGTCTATGATT 59.100 41.667 2.82 0.00 0.00 2.57
2126 2294 7.876582 GGGCCTAAGTAACGTCTATGATTAAAT 59.123 37.037 0.84 0.00 0.00 1.40
2127 2295 8.709646 GGCCTAAGTAACGTCTATGATTAAATG 58.290 37.037 0.00 0.00 0.00 2.32
2128 2296 8.709646 GCCTAAGTAACGTCTATGATTAAATGG 58.290 37.037 0.00 0.00 0.00 3.16
2133 2301 9.962783 AGTAACGTCTATGATTAAATGGAGTAC 57.037 33.333 0.00 0.00 0.00 2.73
2134 2302 9.189723 GTAACGTCTATGATTAAATGGAGTACC 57.810 37.037 0.00 0.00 0.00 3.34
2135 2303 6.756221 ACGTCTATGATTAAATGGAGTACCC 58.244 40.000 0.00 0.00 34.81 3.69
2143 2311 2.998097 TGGAGTACCCATGCAGGC 59.002 61.111 0.00 0.00 40.82 4.85
2144 2312 2.193248 GGAGTACCCATGCAGGCC 59.807 66.667 0.00 0.00 35.39 5.19
2145 2313 2.193248 GAGTACCCATGCAGGCCC 59.807 66.667 0.00 0.00 35.39 5.80
2146 2314 2.286425 AGTACCCATGCAGGCCCT 60.286 61.111 0.00 0.00 35.39 5.19
2147 2315 2.193248 GTACCCATGCAGGCCCTC 59.807 66.667 0.00 0.00 35.39 4.30
2148 2316 2.286045 TACCCATGCAGGCCCTCA 60.286 61.111 0.00 0.00 35.39 3.86
2149 2317 1.697394 TACCCATGCAGGCCCTCAT 60.697 57.895 0.00 0.00 35.39 2.90
2150 2318 0.401250 TACCCATGCAGGCCCTCATA 60.401 55.000 0.00 0.00 35.39 2.15
2151 2319 1.288508 ACCCATGCAGGCCCTCATAA 61.289 55.000 0.00 0.00 35.39 1.90
2152 2320 0.113776 CCCATGCAGGCCCTCATAAT 59.886 55.000 0.00 0.00 35.39 1.28
2153 2321 1.542492 CCATGCAGGCCCTCATAATC 58.458 55.000 0.00 0.00 0.00 1.75
2154 2322 1.542492 CATGCAGGCCCTCATAATCC 58.458 55.000 0.00 0.00 0.00 3.01
2155 2323 1.151760 ATGCAGGCCCTCATAATCCA 58.848 50.000 0.00 0.00 0.00 3.41
2156 2324 1.151760 TGCAGGCCCTCATAATCCAT 58.848 50.000 0.00 0.00 0.00 3.41
2158 2326 2.306805 TGCAGGCCCTCATAATCCATAG 59.693 50.000 0.00 0.00 0.00 2.23
2159 2327 2.943199 GCAGGCCCTCATAATCCATAGC 60.943 54.545 0.00 0.00 0.00 2.97
2160 2328 2.306805 CAGGCCCTCATAATCCATAGCA 59.693 50.000 0.00 0.00 0.00 3.49
2162 2330 3.053842 AGGCCCTCATAATCCATAGCATG 60.054 47.826 0.00 0.00 0.00 4.06
2185 2353 3.612251 GCTGCATGCATTGGTCCT 58.388 55.556 22.97 0.00 42.31 3.85
2186 2354 1.895238 GCTGCATGCATTGGTCCTT 59.105 52.632 22.97 0.00 42.31 3.36
2188 2356 1.202336 GCTGCATGCATTGGTCCTTAC 60.202 52.381 22.97 0.00 42.31 2.34
2189 2357 1.406539 CTGCATGCATTGGTCCTTACC 59.593 52.381 22.97 0.00 46.98 2.85
2190 2358 0.746659 GCATGCATTGGTCCTTACCC 59.253 55.000 14.21 0.00 46.16 3.69
2191 2359 1.024271 CATGCATTGGTCCTTACCCG 58.976 55.000 0.00 0.00 46.16 5.28
2192 2360 0.916086 ATGCATTGGTCCTTACCCGA 59.084 50.000 0.00 0.00 46.16 5.14
2193 2361 0.251916 TGCATTGGTCCTTACCCGAG 59.748 55.000 0.00 0.00 46.16 4.63
2194 2362 1.095807 GCATTGGTCCTTACCCGAGC 61.096 60.000 0.00 0.00 46.16 5.03
2195 2363 0.251916 CATTGGTCCTTACCCGAGCA 59.748 55.000 0.00 0.00 46.16 4.26
2196 2364 2.454369 TTGGTCCTTACCCGAGCAA 58.546 52.632 0.00 0.00 46.16 3.91
2197 2365 0.766131 TTGGTCCTTACCCGAGCAAA 59.234 50.000 0.31 0.00 46.16 3.68
2199 2367 1.143277 TGGTCCTTACCCGAGCAAAAA 59.857 47.619 0.00 0.00 46.16 1.94
2220 4061 1.773541 ATGGGAGGAAAGGGGTTTCT 58.226 50.000 0.00 0.00 0.00 2.52
2223 4064 1.065636 GGGAGGAAAGGGGTTTCTACG 60.066 57.143 0.00 0.00 0.00 3.51
2224 4065 1.904537 GGAGGAAAGGGGTTTCTACGA 59.095 52.381 0.00 0.00 0.00 3.43
2226 4067 2.830321 GAGGAAAGGGGTTTCTACGAGA 59.170 50.000 0.00 0.00 0.00 4.04
2228 4069 2.830321 GGAAAGGGGTTTCTACGAGAGA 59.170 50.000 0.00 0.00 0.00 3.10
2229 4070 3.260128 GGAAAGGGGTTTCTACGAGAGAA 59.740 47.826 0.00 0.00 42.69 2.87
2238 4079 4.801330 TTCTACGAGAGAAAATGAGGCA 57.199 40.909 0.00 0.00 41.39 4.75
2242 4083 2.093764 ACGAGAGAAAATGAGGCAGAGG 60.094 50.000 0.00 0.00 0.00 3.69
2244 4085 3.269178 GAGAGAAAATGAGGCAGAGGTG 58.731 50.000 0.00 0.00 0.00 4.00
2253 4094 2.817396 GCAGAGGTGGAAGCGCTC 60.817 66.667 12.06 4.06 41.87 5.03
2254 4095 2.507992 CAGAGGTGGAAGCGCTCG 60.508 66.667 12.06 0.00 41.87 5.03
2255 4096 4.443266 AGAGGTGGAAGCGCTCGC 62.443 66.667 12.06 5.60 41.87 5.03
2269 4110 4.617520 TCGCTGGCAAACGAGGCA 62.618 61.111 8.07 0.00 42.25 4.75
2285 4126 3.933722 CAGGGCGGGCATCGAGAT 61.934 66.667 3.27 0.00 42.43 2.75
2286 4127 3.933722 AGGGCGGGCATCGAGATG 61.934 66.667 8.62 8.62 42.43 2.90
2287 4128 4.996434 GGGCGGGCATCGAGATGG 62.996 72.222 14.13 0.24 42.43 3.51
2289 4130 2.108976 GCGGGCATCGAGATGGAA 59.891 61.111 14.13 0.00 42.43 3.53
2290 4131 1.523711 GCGGGCATCGAGATGGAAA 60.524 57.895 14.13 0.00 42.43 3.13
2291 4132 1.502163 GCGGGCATCGAGATGGAAAG 61.502 60.000 14.13 0.00 42.43 2.62
2292 4133 0.179073 CGGGCATCGAGATGGAAAGT 60.179 55.000 14.13 0.00 42.43 2.66
2293 4134 1.743772 CGGGCATCGAGATGGAAAGTT 60.744 52.381 14.13 0.00 42.43 2.66
2294 4135 2.483013 CGGGCATCGAGATGGAAAGTTA 60.483 50.000 14.13 0.00 42.43 2.24
2295 4136 3.541632 GGGCATCGAGATGGAAAGTTAA 58.458 45.455 14.13 0.00 39.16 2.01
2297 4138 4.023707 GGGCATCGAGATGGAAAGTTAATG 60.024 45.833 14.13 0.00 39.16 1.90
2298 4139 4.816385 GGCATCGAGATGGAAAGTTAATGA 59.184 41.667 14.13 0.00 39.16 2.57
2299 4140 5.296780 GGCATCGAGATGGAAAGTTAATGAA 59.703 40.000 14.13 0.00 39.16 2.57
2303 4144 4.494199 CGAGATGGAAAGTTAATGAACGGC 60.494 45.833 0.00 0.00 40.76 5.68
2304 4145 3.374058 AGATGGAAAGTTAATGAACGGCG 59.626 43.478 4.80 4.80 40.76 6.46
2305 4146 1.198178 TGGAAAGTTAATGAACGGCGC 59.802 47.619 6.90 0.00 40.76 6.53
2306 4147 1.466866 GGAAAGTTAATGAACGGCGCC 60.467 52.381 19.07 19.07 40.76 6.53
2307 4148 1.467342 GAAAGTTAATGAACGGCGCCT 59.533 47.619 26.68 6.32 40.76 5.52
2308 4149 2.389962 AAGTTAATGAACGGCGCCTA 57.610 45.000 26.68 5.69 40.76 3.93
2309 4150 2.389962 AGTTAATGAACGGCGCCTAA 57.610 45.000 26.68 12.30 40.76 2.69
2311 4152 2.417586 AGTTAATGAACGGCGCCTAAAC 59.582 45.455 26.68 16.20 40.76 2.01
2312 4153 1.000884 TAATGAACGGCGCCTAAACG 58.999 50.000 26.68 13.53 0.00 3.60
2313 4154 0.952010 AATGAACGGCGCCTAAACGT 60.952 50.000 26.68 14.28 43.43 3.99
2317 4158 1.280444 ACGGCGCCTAAACGTTTTG 59.720 52.632 26.68 16.97 37.61 2.44
2318 4159 1.441349 CGGCGCCTAAACGTTTTGG 60.441 57.895 29.68 29.68 36.36 3.28
2319 4160 1.843734 CGGCGCCTAAACGTTTTGGA 61.844 55.000 35.42 12.93 35.47 3.53
2321 4162 1.068125 GGCGCCTAAACGTTTTGGAAT 60.068 47.619 35.42 9.24 35.47 3.01
2322 4163 2.608506 GGCGCCTAAACGTTTTGGAATT 60.609 45.455 35.42 8.53 35.47 2.17
2323 4164 3.366171 GGCGCCTAAACGTTTTGGAATTA 60.366 43.478 35.42 10.87 35.47 1.40
2324 4165 4.417506 GCGCCTAAACGTTTTGGAATTAT 58.582 39.130 35.42 7.10 35.47 1.28
2325 4166 4.497966 GCGCCTAAACGTTTTGGAATTATC 59.502 41.667 35.42 19.98 35.47 1.75
2326 4167 5.675323 GCGCCTAAACGTTTTGGAATTATCT 60.675 40.000 35.42 5.88 35.47 1.98
2327 4168 5.737290 CGCCTAAACGTTTTGGAATTATCTG 59.263 40.000 35.42 15.32 35.47 2.90
2328 4169 6.402766 CGCCTAAACGTTTTGGAATTATCTGA 60.403 38.462 35.42 8.17 35.47 3.27
2329 4170 7.480810 GCCTAAACGTTTTGGAATTATCTGAT 58.519 34.615 35.42 4.62 35.47 2.90
2330 4171 7.973944 GCCTAAACGTTTTGGAATTATCTGATT 59.026 33.333 35.42 4.26 35.47 2.57
2331 4172 9.855021 CCTAAACGTTTTGGAATTATCTGATTT 57.145 29.630 30.08 0.00 35.47 2.17
2335 4176 7.590279 ACGTTTTGGAATTATCTGATTTTCGT 58.410 30.769 0.00 0.00 0.00 3.85
2336 4177 8.723311 ACGTTTTGGAATTATCTGATTTTCGTA 58.277 29.630 0.00 0.00 0.00 3.43
2337 4178 9.549509 CGTTTTGGAATTATCTGATTTTCGTAA 57.450 29.630 0.00 0.00 0.00 3.18
2340 4181 8.801882 TTGGAATTATCTGATTTTCGTAAGGT 57.198 30.769 0.00 0.00 38.47 3.50
2342 4183 8.044309 TGGAATTATCTGATTTTCGTAAGGTGA 58.956 33.333 0.00 0.00 38.47 4.02
2343 4184 8.336080 GGAATTATCTGATTTTCGTAAGGTGAC 58.664 37.037 0.00 0.00 38.47 3.67
2364 4205 4.353777 ACTTATTCACCTAGACAGAGGCA 58.646 43.478 0.00 0.00 40.65 4.75
2365 4206 4.404073 ACTTATTCACCTAGACAGAGGCAG 59.596 45.833 0.00 0.00 40.65 4.85
2438 5946 0.899720 TGGACCACCCGATTAGTCAC 59.100 55.000 0.00 0.00 37.93 3.67
2442 5950 0.527817 CCACCCGATTAGTCACGAGC 60.528 60.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
681 685 2.266055 CTGGAGGTGCGAGGGAAC 59.734 66.667 0.00 0.00 0.00 3.62
682 686 2.203788 ACTGGAGGTGCGAGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
683 687 2.997315 CACTGGAGGTGCGAGGGA 60.997 66.667 0.00 0.00 39.22 4.20
727 731 2.223144 TGAATCAACTTGTAGCACGTGC 59.777 45.455 32.79 32.79 42.49 5.34
741 745 7.559486 AGATCTACTGTAGCATGTTGAATCAA 58.441 34.615 9.98 0.00 0.00 2.57
742 746 7.117285 AGATCTACTGTAGCATGTTGAATCA 57.883 36.000 9.98 0.00 0.00 2.57
753 757 5.572252 AGGGGTACATAGATCTACTGTAGC 58.428 45.833 26.20 26.20 41.05 3.58
757 761 6.732896 AACAAGGGGTACATAGATCTACTG 57.267 41.667 4.10 7.49 0.00 2.74
759 763 7.120923 TCAAACAAGGGGTACATAGATCTAC 57.879 40.000 4.10 0.00 0.00 2.59
760 764 6.901300 ACTCAAACAAGGGGTACATAGATCTA 59.099 38.462 4.57 4.57 0.00 1.98
762 766 5.990668 ACTCAAACAAGGGGTACATAGATC 58.009 41.667 0.00 0.00 0.00 2.75
763 767 5.726793 AGACTCAAACAAGGGGTACATAGAT 59.273 40.000 0.00 0.00 0.00 1.98
766 770 4.564821 GCAGACTCAAACAAGGGGTACATA 60.565 45.833 0.00 0.00 0.00 2.29
767 771 3.810743 GCAGACTCAAACAAGGGGTACAT 60.811 47.826 0.00 0.00 0.00 2.29
769 773 2.152016 GCAGACTCAAACAAGGGGTAC 58.848 52.381 0.00 0.00 0.00 3.34
771 775 0.846693 AGCAGACTCAAACAAGGGGT 59.153 50.000 0.00 0.00 0.00 4.95
772 776 1.528129 GAGCAGACTCAAACAAGGGG 58.472 55.000 0.00 0.00 42.93 4.79
773 777 1.528129 GGAGCAGACTCAAACAAGGG 58.472 55.000 0.00 0.00 45.42 3.95
774 778 1.151668 CGGAGCAGACTCAAACAAGG 58.848 55.000 0.00 0.00 45.42 3.61
813 817 1.277557 GAACAGACCAGATGTCCTGCT 59.722 52.381 0.00 0.00 45.68 4.24
816 820 1.546476 GTCGAACAGACCAGATGTCCT 59.454 52.381 0.00 0.00 45.68 3.85
828 832 2.401766 GCCATGGCAGGTCGAACAG 61.402 63.158 32.08 0.00 41.49 3.16
864 868 1.446966 GAAGCAGGAGACGCACCTC 60.447 63.158 0.00 0.00 35.35 3.85
866 870 1.078848 ATGAAGCAGGAGACGCACC 60.079 57.895 0.00 0.00 33.30 5.01
870 874 2.159787 CGTTTTGATGAAGCAGGAGACG 60.160 50.000 0.00 0.00 0.00 4.18
871 875 2.160417 CCGTTTTGATGAAGCAGGAGAC 59.840 50.000 0.00 0.00 0.00 3.36
1003 1007 0.255318 TCCTCCCTCTCGTGGTAGAC 59.745 60.000 0.00 0.00 0.00 2.59
1016 1020 1.406860 GGTCCTCTCATGCTCCTCCC 61.407 65.000 0.00 0.00 0.00 4.30
1074 1078 2.668632 GGGCCCATCTTCACGACA 59.331 61.111 19.95 0.00 0.00 4.35
1078 1082 2.440980 GCAGGGGCCCATCTTCAC 60.441 66.667 27.72 3.49 0.00 3.18
1109 1113 1.746171 CGTCCATCTCCCAGACGTCTA 60.746 57.143 19.57 1.92 46.23 2.59
1158 1162 4.135153 CCGGAGTGCCAGAGGACG 62.135 72.222 0.00 0.00 0.00 4.79
1198 1202 2.254651 GCCGTCCCGCTCGTATAG 59.745 66.667 0.00 0.00 0.00 1.31
1257 1261 2.881352 GCACGTACCTCTGAGCGC 60.881 66.667 0.00 0.00 0.00 5.92
1285 1289 8.347771 GCACAGCATCAATTTATATCAGAGAAA 58.652 33.333 0.00 0.00 0.00 2.52
1286 1290 7.718314 AGCACAGCATCAATTTATATCAGAGAA 59.282 33.333 0.00 0.00 0.00 2.87
1302 1306 4.143158 CGATATAAGAAGCAGCACAGCATC 60.143 45.833 0.00 0.00 36.85 3.91
1305 1309 3.384668 TCGATATAAGAAGCAGCACAGC 58.615 45.455 0.00 0.00 0.00 4.40
1310 1314 7.589221 CCAAAAGAAATCGATATAAGAAGCAGC 59.411 37.037 0.00 0.00 0.00 5.25
1347 1367 7.557719 CACCAAACCTCCAAATAGATACAAGAT 59.442 37.037 0.00 0.00 0.00 2.40
1357 1377 2.243810 GCACCACCAAACCTCCAAATA 58.756 47.619 0.00 0.00 0.00 1.40
1366 1449 3.361977 ATCGCCGCACCACCAAAC 61.362 61.111 0.00 0.00 0.00 2.93
1392 1475 3.587923 CACATGCCAACCATAAACCAAG 58.412 45.455 0.00 0.00 31.47 3.61
1444 1527 1.376812 GGTTCCCTTTGACGCCGAT 60.377 57.895 0.00 0.00 0.00 4.18
1464 1547 3.393472 GCAACCACCAAAATTGCCA 57.607 47.368 0.00 0.00 42.32 4.92
1473 1556 0.178992 CCAAGAGGAAGCAACCACCA 60.179 55.000 2.26 0.00 36.89 4.17
1496 1579 3.014623 AGGTTGCCGATTAAAGTAAGCC 58.985 45.455 0.00 0.00 0.00 4.35
1506 1589 3.737172 GTGCGCAGGTTGCCGATT 61.737 61.111 12.22 0.00 41.12 3.34
1510 1593 3.605664 AAAGGTGCGCAGGTTGCC 61.606 61.111 12.22 8.41 41.12 4.52
1593 1676 4.794648 CCGGAGCGGCCATGGAAA 62.795 66.667 18.40 0.00 41.17 3.13
1635 1718 5.462405 GGCTAGTCGTCCATCTTTACATAG 58.538 45.833 0.00 0.00 0.00 2.23
1694 1777 7.446001 TTGACATGTTCATGCAGTACAAATA 57.554 32.000 12.00 0.00 32.84 1.40
1788 1872 1.192146 AGGCACGTGTCTGGTATGGT 61.192 55.000 24.23 0.00 0.00 3.55
1790 1874 0.532573 AGAGGCACGTGTCTGGTATG 59.467 55.000 30.24 0.00 0.00 2.39
1791 1875 1.066858 CAAGAGGCACGTGTCTGGTAT 60.067 52.381 30.24 7.72 0.00 2.73
1792 1876 0.317160 CAAGAGGCACGTGTCTGGTA 59.683 55.000 30.24 0.00 0.00 3.25
1793 1877 1.069765 CAAGAGGCACGTGTCTGGT 59.930 57.895 30.24 11.98 0.00 4.00
1794 1878 1.069765 ACAAGAGGCACGTGTCTGG 59.930 57.895 30.24 17.76 36.57 3.86
1795 1879 0.530650 ACACAAGAGGCACGTGTCTG 60.531 55.000 30.24 17.05 39.64 3.51
1801 1885 1.089481 ACACACACACAAGAGGCACG 61.089 55.000 0.00 0.00 0.00 5.34
1817 1901 0.172352 CAAACCACCCACACACACAC 59.828 55.000 0.00 0.00 0.00 3.82
1818 1902 0.967887 CCAAACCACCCACACACACA 60.968 55.000 0.00 0.00 0.00 3.72
1819 1903 0.968393 ACCAAACCACCCACACACAC 60.968 55.000 0.00 0.00 0.00 3.82
1820 1904 0.681564 GACCAAACCACCCACACACA 60.682 55.000 0.00 0.00 0.00 3.72
1821 1905 1.720694 CGACCAAACCACCCACACAC 61.721 60.000 0.00 0.00 0.00 3.82
1822 1906 1.452289 CGACCAAACCACCCACACA 60.452 57.895 0.00 0.00 0.00 3.72
1823 1907 2.841160 GCGACCAAACCACCCACAC 61.841 63.158 0.00 0.00 0.00 3.82
1824 1908 2.517402 GCGACCAAACCACCCACA 60.517 61.111 0.00 0.00 0.00 4.17
1939 2107 4.104102 AGTCCCTTGTAATCAAACACCTCA 59.896 41.667 0.00 0.00 32.87 3.86
1940 2108 4.652822 AGTCCCTTGTAATCAAACACCTC 58.347 43.478 0.00 0.00 32.87 3.85
1941 2109 4.724279 AGTCCCTTGTAATCAAACACCT 57.276 40.909 0.00 0.00 32.87 4.00
1942 2110 5.642491 GTCTAGTCCCTTGTAATCAAACACC 59.358 44.000 0.00 0.00 32.87 4.16
1943 2111 6.465084 AGTCTAGTCCCTTGTAATCAAACAC 58.535 40.000 0.00 0.00 32.87 3.32
1944 2112 6.681729 AGTCTAGTCCCTTGTAATCAAACA 57.318 37.500 0.00 0.00 32.87 2.83
1945 2113 7.981102 AAAGTCTAGTCCCTTGTAATCAAAC 57.019 36.000 0.00 0.00 32.87 2.93
1946 2114 8.990163 AAAAAGTCTAGTCCCTTGTAATCAAA 57.010 30.769 0.00 0.00 32.87 2.69
1994 2162 9.536510 ACTAGAAGACTCTACTGAAAGGTATTT 57.463 33.333 0.00 0.00 33.09 1.40
1995 2163 9.181061 GACTAGAAGACTCTACTGAAAGGTATT 57.819 37.037 0.00 0.00 33.09 1.89
1996 2164 7.776500 GGACTAGAAGACTCTACTGAAAGGTAT 59.224 40.741 0.00 0.00 33.09 2.73
1997 2165 7.111466 GGACTAGAAGACTCTACTGAAAGGTA 58.889 42.308 0.00 0.00 33.09 3.08
1998 2166 5.947566 GGACTAGAAGACTCTACTGAAAGGT 59.052 44.000 0.00 0.00 33.09 3.50
1999 2167 5.358725 GGGACTAGAAGACTCTACTGAAAGG 59.641 48.000 0.00 0.00 33.09 3.11
2000 2168 6.184789 AGGGACTAGAAGACTCTACTGAAAG 58.815 44.000 0.00 0.00 36.02 2.62
2001 2169 6.142259 AGGGACTAGAAGACTCTACTGAAA 57.858 41.667 0.00 0.00 36.02 2.69
2002 2170 5.782677 AGGGACTAGAAGACTCTACTGAA 57.217 43.478 0.00 0.00 36.02 3.02
2003 2171 6.887886 TTAGGGACTAGAAGACTCTACTGA 57.112 41.667 0.00 0.00 44.25 3.41
2004 2172 7.340256 TCTTTAGGGACTAGAAGACTCTACTG 58.660 42.308 0.00 0.00 44.25 2.74
2005 2173 7.513560 TCTTTAGGGACTAGAAGACTCTACT 57.486 40.000 0.00 0.00 44.25 2.57
2006 2174 8.578448 TTTCTTTAGGGACTAGAAGACTCTAC 57.422 38.462 0.00 0.00 44.25 2.59
2007 2175 9.245481 CTTTTCTTTAGGGACTAGAAGACTCTA 57.755 37.037 0.00 0.00 44.25 2.43
2008 2176 7.731235 ACTTTTCTTTAGGGACTAGAAGACTCT 59.269 37.037 0.00 0.00 44.25 3.24
2009 2177 7.898918 ACTTTTCTTTAGGGACTAGAAGACTC 58.101 38.462 0.00 0.00 44.25 3.36
2010 2178 7.038870 GGACTTTTCTTTAGGGACTAGAAGACT 60.039 40.741 0.00 0.00 44.25 3.24
2011 2179 7.098477 GGACTTTTCTTTAGGGACTAGAAGAC 58.902 42.308 0.00 0.00 44.25 3.01
2012 2180 6.212993 GGGACTTTTCTTTAGGGACTAGAAGA 59.787 42.308 0.00 0.00 44.25 2.87
2013 2181 6.213802 AGGGACTTTTCTTTAGGGACTAGAAG 59.786 42.308 0.00 0.00 37.71 2.85
2014 2182 6.089502 AGGGACTTTTCTTTAGGGACTAGAA 58.910 40.000 0.00 0.00 37.71 2.10
2015 2183 5.662597 AGGGACTTTTCTTTAGGGACTAGA 58.337 41.667 0.00 0.00 37.71 2.43
2032 2200 6.653989 CCTATGTAATCAAACAGAAGGGACT 58.346 40.000 0.00 0.00 34.82 3.85
2033 2201 6.927294 CCTATGTAATCAAACAGAAGGGAC 57.073 41.667 0.00 0.00 34.82 4.46
2036 2204 9.627123 TTAATCCCTATGTAATCAAACAGAAGG 57.373 33.333 0.00 0.00 36.72 3.46
2041 2209 9.983024 TCCTTTTAATCCCTATGTAATCAAACA 57.017 29.630 0.00 0.00 0.00 2.83
2070 2238 8.253867 TGGTTACAAGGACTAGACTAGAAAAA 57.746 34.615 16.55 0.00 0.00 1.94
2071 2239 7.844493 TGGTTACAAGGACTAGACTAGAAAA 57.156 36.000 16.55 0.00 0.00 2.29
2072 2240 7.844493 TTGGTTACAAGGACTAGACTAGAAA 57.156 36.000 16.55 0.00 31.73 2.52
2073 2241 7.288389 TGTTTGGTTACAAGGACTAGACTAGAA 59.712 37.037 16.55 0.00 37.97 2.10
2074 2242 6.779049 TGTTTGGTTACAAGGACTAGACTAGA 59.221 38.462 16.55 0.00 37.97 2.43
2075 2243 6.989659 TGTTTGGTTACAAGGACTAGACTAG 58.010 40.000 8.00 8.00 37.97 2.57
2076 2244 6.014840 CCTGTTTGGTTACAAGGACTAGACTA 60.015 42.308 0.00 0.00 37.97 2.59
2077 2245 5.221661 CCTGTTTGGTTACAAGGACTAGACT 60.222 44.000 0.00 0.00 37.97 3.24
2078 2246 4.995487 CCTGTTTGGTTACAAGGACTAGAC 59.005 45.833 0.00 0.00 37.97 2.59
2079 2247 4.041198 CCCTGTTTGGTTACAAGGACTAGA 59.959 45.833 0.00 0.00 37.97 2.43
2080 2248 4.324267 CCCTGTTTGGTTACAAGGACTAG 58.676 47.826 0.00 0.00 37.97 2.57
2081 2249 3.497227 GCCCTGTTTGGTTACAAGGACTA 60.497 47.826 0.00 0.00 37.97 2.59
2082 2250 2.751816 GCCCTGTTTGGTTACAAGGACT 60.752 50.000 0.00 0.00 37.97 3.85
2083 2251 1.611977 GCCCTGTTTGGTTACAAGGAC 59.388 52.381 0.00 0.00 37.97 3.85
2084 2252 1.479757 GGCCCTGTTTGGTTACAAGGA 60.480 52.381 0.00 0.00 37.97 3.36
2085 2253 0.966179 GGCCCTGTTTGGTTACAAGG 59.034 55.000 0.00 0.00 37.97 3.61
2086 2254 1.995376 AGGCCCTGTTTGGTTACAAG 58.005 50.000 0.00 0.00 37.97 3.16
2087 2255 3.117436 ACTTAGGCCCTGTTTGGTTACAA 60.117 43.478 0.00 0.00 34.07 2.41
2088 2256 2.444010 ACTTAGGCCCTGTTTGGTTACA 59.556 45.455 0.00 0.00 0.00 2.41
2089 2257 3.150458 ACTTAGGCCCTGTTTGGTTAC 57.850 47.619 0.00 0.00 0.00 2.50
2090 2258 4.654915 GTTACTTAGGCCCTGTTTGGTTA 58.345 43.478 0.00 0.00 0.00 2.85
2091 2259 3.493334 GTTACTTAGGCCCTGTTTGGTT 58.507 45.455 0.00 0.00 0.00 3.67
2092 2260 2.551504 CGTTACTTAGGCCCTGTTTGGT 60.552 50.000 0.00 0.00 0.00 3.67
2093 2261 2.081462 CGTTACTTAGGCCCTGTTTGG 58.919 52.381 0.00 0.00 0.00 3.28
2094 2262 2.740447 GACGTTACTTAGGCCCTGTTTG 59.260 50.000 0.00 0.00 0.00 2.93
2095 2263 2.636403 AGACGTTACTTAGGCCCTGTTT 59.364 45.455 0.00 0.00 0.00 2.83
2096 2264 2.254508 AGACGTTACTTAGGCCCTGTT 58.745 47.619 0.00 0.00 0.00 3.16
2097 2265 1.934410 AGACGTTACTTAGGCCCTGT 58.066 50.000 0.00 0.00 0.00 4.00
2098 2266 3.635373 TCATAGACGTTACTTAGGCCCTG 59.365 47.826 0.00 0.00 0.00 4.45
2099 2267 3.907221 TCATAGACGTTACTTAGGCCCT 58.093 45.455 0.00 0.00 0.00 5.19
2100 2268 4.868314 ATCATAGACGTTACTTAGGCCC 57.132 45.455 0.00 0.00 0.00 5.80
2101 2269 8.709646 CATTTAATCATAGACGTTACTTAGGCC 58.290 37.037 0.00 0.00 0.00 5.19
2102 2270 8.709646 CCATTTAATCATAGACGTTACTTAGGC 58.290 37.037 0.00 0.00 0.00 3.93
2103 2271 9.976511 TCCATTTAATCATAGACGTTACTTAGG 57.023 33.333 0.00 0.00 0.00 2.69
2107 2275 9.962783 GTACTCCATTTAATCATAGACGTTACT 57.037 33.333 0.00 0.00 0.00 2.24
2127 2295 2.193248 GGCCTGCATGGGTACTCC 59.807 66.667 0.00 0.00 36.00 3.85
2128 2296 2.193248 GGGCCTGCATGGGTACTC 59.807 66.667 0.84 0.00 36.00 2.59
2133 2301 0.113776 ATTATGAGGGCCTGCATGGG 59.886 55.000 12.95 0.00 36.00 4.00
2134 2302 1.542492 GATTATGAGGGCCTGCATGG 58.458 55.000 12.95 0.00 39.35 3.66
2135 2303 1.202964 TGGATTATGAGGGCCTGCATG 60.203 52.381 12.95 0.00 0.00 4.06
2136 2304 1.151760 TGGATTATGAGGGCCTGCAT 58.848 50.000 12.95 16.64 0.00 3.96
2137 2305 1.151760 ATGGATTATGAGGGCCTGCA 58.848 50.000 12.95 9.71 0.00 4.41
2138 2306 2.943199 GCTATGGATTATGAGGGCCTGC 60.943 54.545 12.95 2.95 0.00 4.85
2139 2307 2.306805 TGCTATGGATTATGAGGGCCTG 59.693 50.000 12.95 0.00 0.00 4.85
2141 2309 3.285484 CATGCTATGGATTATGAGGGCC 58.715 50.000 0.00 0.00 0.00 5.80
2158 2326 2.101575 CATGCAGCACGTCCATGC 59.898 61.111 0.00 8.77 46.50 4.06
2159 2327 2.101575 GCATGCAGCACGTCCATG 59.898 61.111 14.21 9.45 44.79 3.66
2168 2336 1.105457 TAAGGACCAATGCATGCAGC 58.895 50.000 26.69 11.94 45.96 5.25
2169 2337 1.406539 GGTAAGGACCAATGCATGCAG 59.593 52.381 26.69 15.02 46.12 4.41
2170 2338 1.473258 GGTAAGGACCAATGCATGCA 58.527 50.000 25.04 25.04 46.12 3.96
2180 2348 1.900245 TTTTTGCTCGGGTAAGGACC 58.100 50.000 0.00 0.00 46.13 4.46
2197 2365 3.360740 AACCCCTTTCCTCCCATTTTT 57.639 42.857 0.00 0.00 0.00 1.94
2199 2367 2.454772 AGAAACCCCTTTCCTCCCATTT 59.545 45.455 0.00 0.00 37.12 2.32
2202 2370 1.990327 GTAGAAACCCCTTTCCTCCCA 59.010 52.381 0.00 0.00 37.12 4.37
2203 2371 1.065636 CGTAGAAACCCCTTTCCTCCC 60.066 57.143 0.00 0.00 37.12 4.30
2204 2372 1.904537 TCGTAGAAACCCCTTTCCTCC 59.095 52.381 0.00 0.00 37.12 4.30
2207 3160 2.830321 TCTCTCGTAGAAACCCCTTTCC 59.170 50.000 0.00 0.00 37.12 3.13
2220 4061 3.131223 CCTCTGCCTCATTTTCTCTCGTA 59.869 47.826 0.00 0.00 0.00 3.43
2223 4064 3.269178 CACCTCTGCCTCATTTTCTCTC 58.731 50.000 0.00 0.00 0.00 3.20
2224 4065 2.026449 CCACCTCTGCCTCATTTTCTCT 60.026 50.000 0.00 0.00 0.00 3.10
2226 4067 1.988107 TCCACCTCTGCCTCATTTTCT 59.012 47.619 0.00 0.00 0.00 2.52
2228 4069 2.800250 CTTCCACCTCTGCCTCATTTT 58.200 47.619 0.00 0.00 0.00 1.82
2229 4070 1.615384 GCTTCCACCTCTGCCTCATTT 60.615 52.381 0.00 0.00 0.00 2.32
2232 4073 2.947532 CGCTTCCACCTCTGCCTCA 61.948 63.158 0.00 0.00 0.00 3.86
2234 4075 4.400961 GCGCTTCCACCTCTGCCT 62.401 66.667 0.00 0.00 0.00 4.75
2235 4076 4.400961 AGCGCTTCCACCTCTGCC 62.401 66.667 2.64 0.00 0.00 4.85
2238 4079 4.443266 GCGAGCGCTTCCACCTCT 62.443 66.667 13.26 0.00 38.26 3.69
2252 4093 4.617520 TGCCTCGTTTGCCAGCGA 62.618 61.111 0.00 0.00 35.70 4.93
2253 4094 4.093952 CTGCCTCGTTTGCCAGCG 62.094 66.667 0.00 0.00 0.00 5.18
2254 4095 3.741476 CCTGCCTCGTTTGCCAGC 61.741 66.667 0.00 0.00 0.00 4.85
2255 4096 3.058160 CCCTGCCTCGTTTGCCAG 61.058 66.667 0.00 0.00 0.00 4.85
2268 4109 3.933722 ATCTCGATGCCCGCCCTG 61.934 66.667 0.00 0.00 38.37 4.45
2269 4110 3.933722 CATCTCGATGCCCGCCCT 61.934 66.667 0.00 0.00 38.37 5.19
2271 4112 2.940890 TTTCCATCTCGATGCCCGCC 62.941 60.000 1.37 0.00 37.49 6.13
2272 4113 1.502163 CTTTCCATCTCGATGCCCGC 61.502 60.000 1.37 0.00 37.49 6.13
2273 4114 0.179073 ACTTTCCATCTCGATGCCCG 60.179 55.000 1.37 0.00 37.49 6.13
2274 4115 2.044123 AACTTTCCATCTCGATGCCC 57.956 50.000 1.37 0.00 37.49 5.36
2276 4117 5.991328 TCATTAACTTTCCATCTCGATGC 57.009 39.130 1.37 0.00 37.49 3.91
2277 4118 6.414079 CGTTCATTAACTTTCCATCTCGATG 58.586 40.000 0.00 0.00 34.69 3.84
2279 4120 4.868171 CCGTTCATTAACTTTCCATCTCGA 59.132 41.667 0.00 0.00 33.15 4.04
2281 4122 4.494199 CGCCGTTCATTAACTTTCCATCTC 60.494 45.833 0.00 0.00 33.15 2.75
2282 4123 3.374058 CGCCGTTCATTAACTTTCCATCT 59.626 43.478 0.00 0.00 33.15 2.90
2283 4124 3.680789 CGCCGTTCATTAACTTTCCATC 58.319 45.455 0.00 0.00 33.15 3.51
2284 4125 2.159435 GCGCCGTTCATTAACTTTCCAT 60.159 45.455 0.00 0.00 33.15 3.41
2285 4126 1.198178 GCGCCGTTCATTAACTTTCCA 59.802 47.619 0.00 0.00 33.15 3.53
2286 4127 1.466866 GGCGCCGTTCATTAACTTTCC 60.467 52.381 12.58 0.00 33.15 3.13
2287 4128 1.467342 AGGCGCCGTTCATTAACTTTC 59.533 47.619 23.20 0.00 33.15 2.62
2289 4130 2.389962 TAGGCGCCGTTCATTAACTT 57.610 45.000 23.20 0.33 33.15 2.66
2290 4131 2.389962 TTAGGCGCCGTTCATTAACT 57.610 45.000 23.20 0.95 33.15 2.24
2291 4132 2.777494 GTTTAGGCGCCGTTCATTAAC 58.223 47.619 23.20 9.78 0.00 2.01
2292 4133 1.394227 CGTTTAGGCGCCGTTCATTAA 59.606 47.619 23.20 10.31 0.00 1.40
2293 4134 1.000884 CGTTTAGGCGCCGTTCATTA 58.999 50.000 23.20 3.27 0.00 1.90
2294 4135 0.952010 ACGTTTAGGCGCCGTTCATT 60.952 50.000 23.20 4.49 34.88 2.57
2295 4136 0.952010 AACGTTTAGGCGCCGTTCAT 60.952 50.000 23.20 5.39 40.46 2.57
2297 4138 0.041047 AAAACGTTTAGGCGCCGTTC 60.041 50.000 23.20 12.10 43.32 3.95
2298 4139 0.317186 CAAAACGTTTAGGCGCCGTT 60.317 50.000 23.20 18.03 45.76 4.44
2299 4140 1.280444 CAAAACGTTTAGGCGCCGT 59.720 52.632 23.20 12.28 36.17 5.68
2303 4144 5.737290 CAGATAATTCCAAAACGTTTAGGCG 59.263 40.000 15.03 3.49 37.94 5.52
2304 4145 6.848451 TCAGATAATTCCAAAACGTTTAGGC 58.152 36.000 15.03 0.00 0.00 3.93
2305 4146 9.855021 AAATCAGATAATTCCAAAACGTTTAGG 57.145 29.630 15.03 9.66 0.00 2.69
2308 4149 8.911662 CGAAAATCAGATAATTCCAAAACGTTT 58.088 29.630 7.96 7.96 0.00 3.60
2309 4150 8.079809 ACGAAAATCAGATAATTCCAAAACGTT 58.920 29.630 0.00 0.00 0.00 3.99
2311 4152 9.549509 TTACGAAAATCAGATAATTCCAAAACG 57.450 29.630 0.00 0.00 0.00 3.60
2315 4156 8.673711 CACCTTACGAAAATCAGATAATTCCAA 58.326 33.333 0.00 0.08 0.00 3.53
2317 4158 8.336080 GTCACCTTACGAAAATCAGATAATTCC 58.664 37.037 0.00 0.00 0.00 3.01
2318 4159 9.099454 AGTCACCTTACGAAAATCAGATAATTC 57.901 33.333 0.00 0.00 0.00 2.17
2319 4160 9.449719 AAGTCACCTTACGAAAATCAGATAATT 57.550 29.630 0.00 0.00 0.00 1.40
2323 4164 9.099454 GAATAAGTCACCTTACGAAAATCAGAT 57.901 33.333 0.00 0.00 36.03 2.90
2324 4165 8.092068 TGAATAAGTCACCTTACGAAAATCAGA 58.908 33.333 0.00 0.00 36.03 3.27
2325 4166 8.251750 TGAATAAGTCACCTTACGAAAATCAG 57.748 34.615 0.00 0.00 36.03 2.90
2340 4181 4.402793 GCCTCTGTCTAGGTGAATAAGTCA 59.597 45.833 0.00 0.00 39.02 3.41
2342 4183 4.353777 TGCCTCTGTCTAGGTGAATAAGT 58.646 43.478 0.00 0.00 39.02 2.24
2343 4184 4.404073 ACTGCCTCTGTCTAGGTGAATAAG 59.596 45.833 0.00 0.00 39.02 1.73
2345 4186 3.982516 ACTGCCTCTGTCTAGGTGAATA 58.017 45.455 0.00 0.00 39.02 1.75
2346 4187 2.826488 ACTGCCTCTGTCTAGGTGAAT 58.174 47.619 0.00 0.00 39.02 2.57
2347 4188 2.310779 ACTGCCTCTGTCTAGGTGAA 57.689 50.000 0.00 0.00 39.02 3.18
2349 4190 6.412362 AATTATACTGCCTCTGTCTAGGTG 57.588 41.667 0.00 0.00 39.02 4.00
2350 4191 7.439108 AAAATTATACTGCCTCTGTCTAGGT 57.561 36.000 0.00 0.00 39.02 3.08
2351 4192 7.987458 TGAAAAATTATACTGCCTCTGTCTAGG 59.013 37.037 0.00 0.00 39.87 3.02
2352 4193 8.948631 TGAAAAATTATACTGCCTCTGTCTAG 57.051 34.615 0.00 0.00 0.00 2.43
2354 4195 7.885399 AGTTGAAAAATTATACTGCCTCTGTCT 59.115 33.333 0.00 0.00 0.00 3.41
2355 4196 8.045176 AGTTGAAAAATTATACTGCCTCTGTC 57.955 34.615 0.00 0.00 0.00 3.51
2356 4197 9.686683 ATAGTTGAAAAATTATACTGCCTCTGT 57.313 29.630 0.00 0.00 0.00 3.41
2424 5932 0.456221 AGCTCGTGACTAATCGGGTG 59.544 55.000 0.00 0.00 0.00 4.61
2438 5946 4.270808 TGACATGCAATTATACACAGCTCG 59.729 41.667 0.00 0.00 0.00 5.03
2442 5950 6.183360 ACCCATTGACATGCAATTATACACAG 60.183 38.462 11.21 1.30 44.68 3.66
2624 6133 8.854979 TGAACATTTATCCGATTTGCAAATAG 57.145 30.769 24.15 22.62 0.00 1.73
2626 6135 9.985730 ATATGAACATTTATCCGATTTGCAAAT 57.014 25.926 24.33 24.33 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.