Multiple sequence alignment - TraesCS3A01G130600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G130600 chr3A 100.000 2315 0 0 1 2315 107530055 107527741 0.000000e+00 4276.0
1 TraesCS3A01G130600 chr3A 85.783 1041 129 16 18 1050 88258917 88259946 0.000000e+00 1085.0
2 TraesCS3A01G130600 chr3A 81.844 1063 148 39 10 1051 254787446 254786408 0.000000e+00 852.0
3 TraesCS3A01G130600 chr3A 98.696 230 3 0 2061 2290 639646006 639645777 2.140000e-110 409.0
4 TraesCS3A01G130600 chr3A 91.736 242 16 4 1829 2068 549535257 549535018 1.330000e-87 333.0
5 TraesCS3A01G130600 chr3A 91.556 225 16 3 1845 2067 549527646 549527423 8.030000e-80 307.0
6 TraesCS3A01G130600 chr3A 89.362 94 10 0 1466 1559 279422194 279422287 4.040000e-23 119.0
7 TraesCS3A01G130600 chr6A 89.822 1631 145 20 41 1661 329948706 329947087 0.000000e+00 2073.0
8 TraesCS3A01G130600 chr6A 89.638 1631 148 20 41 1661 329956668 329955049 0.000000e+00 2056.0
9 TraesCS3A01G130600 chr6A 89.393 1631 151 21 41 1661 329940741 329939123 0.000000e+00 2034.0
10 TraesCS3A01G130600 chr6A 86.084 1042 109 33 1 1017 42949771 42950801 0.000000e+00 1088.0
11 TraesCS3A01G130600 chr6A 91.632 239 17 3 1829 2065 159445681 159445918 6.170000e-86 327.0
12 TraesCS3A01G130600 chr1A 89.304 963 89 14 369 1322 178883438 178884395 0.000000e+00 1195.0
13 TraesCS3A01G130600 chr1A 87.845 979 101 18 1 969 269430629 269429659 0.000000e+00 1133.0
14 TraesCS3A01G130600 chr1A 84.550 1055 128 27 19 1050 386696802 386695760 0.000000e+00 1013.0
15 TraesCS3A01G130600 chr1A 96.386 415 13 1 1651 2065 300308116 300308528 0.000000e+00 682.0
16 TraesCS3A01G130600 chr1A 96.145 415 14 1 1651 2065 300315751 300316163 0.000000e+00 676.0
17 TraesCS3A01G130600 chr1A 93.696 349 19 3 1313 1661 178884854 178885199 9.480000e-144 520.0
18 TraesCS3A01G130600 chr1A 97.368 228 6 0 2063 2290 32904424 32904651 2.790000e-104 388.0
19 TraesCS3A01G130600 chr1A 96.774 31 1 0 2285 2315 300308530 300308560 4.000000e-03 52.8
20 TraesCS3A01G130600 chr1A 96.774 31 1 0 2285 2315 300316165 300316195 4.000000e-03 52.8
21 TraesCS3A01G130600 chr7A 88.681 963 88 21 19 969 690671194 690670241 0.000000e+00 1155.0
22 TraesCS3A01G130600 chr7A 97.872 235 3 2 2058 2290 96079981 96080215 2.770000e-109 405.0
23 TraesCS3A01G130600 chr7A 94.444 216 10 1 1651 1866 408809576 408809789 4.770000e-87 331.0
24 TraesCS3A01G130600 chr7A 90.909 231 18 3 1143 1371 638808064 638808293 8.030000e-80 307.0
25 TraesCS3A01G130600 chr7A 92.488 213 14 1 1651 1863 408819001 408819211 1.040000e-78 303.0
26 TraesCS3A01G130600 chr7A 90.476 231 19 3 1143 1371 638839401 638839630 3.740000e-78 302.0
27 TraesCS3A01G130600 chr7A 93.220 59 3 1 1603 1661 448151050 448151107 4.100000e-13 86.1
28 TraesCS3A01G130600 chr5A 88.078 973 97 19 19 982 241794166 241793204 0.000000e+00 1136.0
29 TraesCS3A01G130600 chr5A 95.652 391 14 2 1651 2041 64725004 64724617 1.950000e-175 625.0
30 TraesCS3A01G130600 chr5A 95.116 389 16 2 1653 2041 64672493 64672108 5.470000e-171 610.0
31 TraesCS3A01G130600 chr4A 86.085 963 114 19 19 970 327770126 327769173 0.000000e+00 1018.0
32 TraesCS3A01G130600 chr4A 95.444 417 17 1 1651 2065 325582458 325582874 0.000000e+00 664.0
33 TraesCS3A01G130600 chr4A 96.330 327 10 1 1739 2065 325590137 325590461 9.410000e-149 536.0
34 TraesCS3A01G130600 chr4A 92.558 215 14 1 1651 1865 226812651 226812439 8.030000e-80 307.0
35 TraesCS3A01G130600 chr4A 92.093 215 15 1 1651 1865 226800207 226799995 3.740000e-78 302.0
36 TraesCS3A01G130600 chr4A 87.204 211 25 2 1398 1608 373849439 373849231 2.970000e-59 239.0
37 TraesCS3A01G130600 chr4A 96.774 31 1 0 2285 2315 325582876 325582906 4.000000e-03 52.8
38 TraesCS3A01G130600 chr2A 82.546 1186 156 39 1 1160 640488533 640487373 0.000000e+00 996.0
39 TraesCS3A01G130600 chr7B 79.949 1187 176 49 1 1153 396194701 396195859 0.000000e+00 817.0
40 TraesCS3A01G130600 chr5B 79.153 1204 182 55 1 1167 193105497 193106668 0.000000e+00 769.0
41 TraesCS3A01G130600 chr5B 79.906 1065 156 43 120 1153 193112871 193113908 0.000000e+00 728.0
42 TraesCS3A01G130600 chr5B 89.855 69 7 0 1381 1449 219348955 219349023 3.170000e-14 89.8
43 TraesCS3A01G130600 chr2B 98.696 230 3 0 2061 2290 495901907 495902136 2.140000e-110 409.0
44 TraesCS3A01G130600 chr2B 99.119 227 2 0 2064 2290 679845440 679845214 2.140000e-110 409.0
45 TraesCS3A01G130600 chr2B 98.684 228 3 0 2063 2290 495902437 495902210 2.770000e-109 405.0
46 TraesCS3A01G130600 chr6B 98.246 228 4 0 2063 2290 356492015 356492242 1.290000e-107 399.0
47 TraesCS3A01G130600 chr3B 96.537 231 7 1 2060 2290 595275895 595275666 4.670000e-102 381.0
48 TraesCS3A01G130600 chr3B 96.903 226 7 0 2065 2290 602242671 602242446 1.680000e-101 379.0
49 TraesCS3A01G130600 chr5D 90.171 234 20 3 1140 1371 303054627 303054859 3.740000e-78 302.0
50 TraesCS3A01G130600 chr3D 89.744 234 21 3 1140 1371 527204291 527204523 1.740000e-76 296.0
51 TraesCS3A01G130600 chr3D 89.744 117 10 1 1470 1586 33349361 33349475 5.150000e-32 148.0
52 TraesCS3A01G130600 chr4D 86.809 235 28 3 1140 1372 373140922 373141155 2.280000e-65 259.0
53 TraesCS3A01G130600 chr4B 88.136 118 10 4 1052 1166 355195076 355195192 1.120000e-28 137.0
54 TraesCS3A01G130600 chrUn 83.740 123 19 1 1444 1566 64344470 64344349 5.230000e-22 115.0
55 TraesCS3A01G130600 chr6D 93.939 66 4 0 1483 1548 228705615 228705680 1.460000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G130600 chr3A 107527741 107530055 2314 True 4276.0 4276 100.000 1 2315 1 chr3A.!!$R1 2314
1 TraesCS3A01G130600 chr3A 88258917 88259946 1029 False 1085.0 1085 85.783 18 1050 1 chr3A.!!$F1 1032
2 TraesCS3A01G130600 chr3A 254786408 254787446 1038 True 852.0 852 81.844 10 1051 1 chr3A.!!$R2 1041
3 TraesCS3A01G130600 chr6A 329947087 329948706 1619 True 2073.0 2073 89.822 41 1661 1 chr6A.!!$R2 1620
4 TraesCS3A01G130600 chr6A 329955049 329956668 1619 True 2056.0 2056 89.638 41 1661 1 chr6A.!!$R3 1620
5 TraesCS3A01G130600 chr6A 329939123 329940741 1618 True 2034.0 2034 89.393 41 1661 1 chr6A.!!$R1 1620
6 TraesCS3A01G130600 chr6A 42949771 42950801 1030 False 1088.0 1088 86.084 1 1017 1 chr6A.!!$F1 1016
7 TraesCS3A01G130600 chr1A 269429659 269430629 970 True 1133.0 1133 87.845 1 969 1 chr1A.!!$R1 968
8 TraesCS3A01G130600 chr1A 386695760 386696802 1042 True 1013.0 1013 84.550 19 1050 1 chr1A.!!$R2 1031
9 TraesCS3A01G130600 chr1A 178883438 178885199 1761 False 857.5 1195 91.500 369 1661 2 chr1A.!!$F2 1292
10 TraesCS3A01G130600 chr7A 690670241 690671194 953 True 1155.0 1155 88.681 19 969 1 chr7A.!!$R1 950
11 TraesCS3A01G130600 chr5A 241793204 241794166 962 True 1136.0 1136 88.078 19 982 1 chr5A.!!$R3 963
12 TraesCS3A01G130600 chr4A 327769173 327770126 953 True 1018.0 1018 86.085 19 970 1 chr4A.!!$R3 951
13 TraesCS3A01G130600 chr2A 640487373 640488533 1160 True 996.0 996 82.546 1 1160 1 chr2A.!!$R1 1159
14 TraesCS3A01G130600 chr7B 396194701 396195859 1158 False 817.0 817 79.949 1 1153 1 chr7B.!!$F1 1152
15 TraesCS3A01G130600 chr5B 193105497 193106668 1171 False 769.0 769 79.153 1 1167 1 chr5B.!!$F1 1166
16 TraesCS3A01G130600 chr5B 193112871 193113908 1037 False 728.0 728 79.906 120 1153 1 chr5B.!!$F2 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 241 1.339727 GGTACCAACCCGAAGAAGCAT 60.34 52.381 7.15 0.0 40.21 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2660 0.034337 TCCAAACGAGTACCCAGCAC 59.966 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 216 1.659335 GTCCTCACAAACGCGACGA 60.659 57.895 15.93 0.00 0.00 4.20
235 241 1.339727 GGTACCAACCCGAAGAAGCAT 60.340 52.381 7.15 0.00 40.21 3.79
286 293 2.603021 ACCACCACATAAACATGGCAA 58.397 42.857 0.00 0.00 0.00 4.52
327 334 1.743394 GCATGTCCGGTTTAAAGAGGG 59.257 52.381 0.00 1.89 0.00 4.30
414 427 5.185442 TGCATTATGATGAAACACCACATGT 59.815 36.000 0.85 0.00 38.21 3.21
456 472 7.747690 TCGGTTATGTACCCCAACAATATTAT 58.252 34.615 0.00 0.00 44.70 1.28
495 514 8.241497 TGGCAAGAGATGAAGCATAAATAAAT 57.759 30.769 0.00 0.00 0.00 1.40
528 549 2.422479 GGAAGTTTAATGAGGCCGGAAC 59.578 50.000 5.05 0.00 0.00 3.62
529 550 2.871096 AGTTTAATGAGGCCGGAACA 57.129 45.000 5.05 1.05 0.00 3.18
531 552 2.817844 AGTTTAATGAGGCCGGAACAAC 59.182 45.455 5.05 0.00 0.00 3.32
532 553 2.554893 GTTTAATGAGGCCGGAACAACA 59.445 45.455 5.05 2.22 0.00 3.33
544 566 3.610677 CCGGAACAACAAAACAACAAGTC 59.389 43.478 0.00 0.00 0.00 3.01
545 567 4.481463 CGGAACAACAAAACAACAAGTCT 58.519 39.130 0.00 0.00 0.00 3.24
546 568 5.392165 CCGGAACAACAAAACAACAAGTCTA 60.392 40.000 0.00 0.00 0.00 2.59
1129 1200 1.118965 TTGTCGCTGGGTCTTCCTCA 61.119 55.000 0.00 0.00 36.20 3.86
1207 1279 1.004758 AGCAGGGAAGATAGGGGCA 59.995 57.895 0.00 0.00 0.00 5.36
1251 1323 4.087892 CAGTGGCTGGTCGAGGGG 62.088 72.222 0.00 0.00 0.00 4.79
1270 1342 1.260544 GCTTGGGGAAGAGCAACAAT 58.739 50.000 0.00 0.00 38.73 2.71
1433 1973 2.284699 CAAGGGACGGAGGGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
1439 1979 2.997897 ACGGAGGGAGGTGCTGAC 60.998 66.667 0.00 0.00 0.00 3.51
1512 2052 0.392193 CGCCTCATCCTCTGCTTGTT 60.392 55.000 0.00 0.00 0.00 2.83
1661 2201 3.958860 GCACTGTGCAGGGGAGGT 61.959 66.667 26.70 0.00 44.26 3.85
1662 2202 2.348998 CACTGTGCAGGGGAGGTC 59.651 66.667 4.11 0.00 0.00 3.85
1663 2203 2.205462 ACTGTGCAGGGGAGGTCT 59.795 61.111 4.11 0.00 0.00 3.85
1664 2204 2.219875 ACTGTGCAGGGGAGGTCTG 61.220 63.158 4.11 0.00 35.49 3.51
1665 2205 2.930019 TGTGCAGGGGAGGTCTGG 60.930 66.667 0.00 0.00 33.16 3.86
1666 2206 3.721706 GTGCAGGGGAGGTCTGGG 61.722 72.222 0.00 0.00 33.16 4.45
1667 2207 3.940480 TGCAGGGGAGGTCTGGGA 61.940 66.667 0.00 0.00 33.16 4.37
1668 2208 3.403558 GCAGGGGAGGTCTGGGAC 61.404 72.222 0.00 0.00 33.16 4.46
1669 2209 3.077556 CAGGGGAGGTCTGGGACG 61.078 72.222 0.00 0.00 32.65 4.79
1670 2210 4.400251 AGGGGAGGTCTGGGACGG 62.400 72.222 0.00 0.00 32.65 4.79
1677 2217 4.222847 GTCTGGGACGGCGGGATC 62.223 72.222 13.24 0.00 32.53 3.36
1725 2265 2.437716 GGCCGGATCCGAAGCAAA 60.438 61.111 35.42 0.00 42.83 3.68
1726 2266 2.761195 GGCCGGATCCGAAGCAAAC 61.761 63.158 35.42 14.05 42.83 2.93
1727 2267 1.745489 GCCGGATCCGAAGCAAACT 60.745 57.895 35.42 0.00 42.83 2.66
1728 2268 1.982073 GCCGGATCCGAAGCAAACTG 61.982 60.000 35.42 15.77 42.83 3.16
1729 2269 0.673644 CCGGATCCGAAGCAAACTGT 60.674 55.000 35.42 0.00 42.83 3.55
1730 2270 0.443869 CGGATCCGAAGCAAACTGTG 59.556 55.000 30.62 0.00 42.83 3.66
1731 2271 0.804989 GGATCCGAAGCAAACTGTGG 59.195 55.000 0.00 0.00 0.00 4.17
1732 2272 0.169009 GATCCGAAGCAAACTGTGGC 59.831 55.000 0.00 0.00 0.00 5.01
1733 2273 1.577328 ATCCGAAGCAAACTGTGGCG 61.577 55.000 0.00 0.00 34.54 5.69
1734 2274 2.252260 CGAAGCAAACTGTGGCGG 59.748 61.111 0.00 0.00 34.54 6.13
1735 2275 2.050077 GAAGCAAACTGTGGCGGC 60.050 61.111 0.00 0.00 34.54 6.53
1736 2276 2.519302 AAGCAAACTGTGGCGGCT 60.519 55.556 11.43 0.00 36.13 5.52
1737 2277 2.075426 GAAGCAAACTGTGGCGGCTT 62.075 55.000 11.43 0.00 46.55 4.35
1738 2278 2.354074 AAGCAAACTGTGGCGGCTTG 62.354 55.000 11.43 7.05 42.68 4.01
1739 2279 2.844451 GCAAACTGTGGCGGCTTGA 61.844 57.895 11.43 0.00 0.00 3.02
1740 2280 1.283793 CAAACTGTGGCGGCTTGAG 59.716 57.895 11.43 5.73 0.00 3.02
1741 2281 1.898574 AAACTGTGGCGGCTTGAGG 60.899 57.895 11.43 0.00 0.00 3.86
1762 2302 3.777925 CGACGCGGCAAGTCCTTG 61.778 66.667 14.85 2.63 43.14 3.61
1763 2303 3.423154 GACGCGGCAAGTCCTTGG 61.423 66.667 7.34 0.00 40.74 3.61
1769 2309 3.423154 GCAAGTCCTTGGCGTCGG 61.423 66.667 8.97 0.00 40.74 4.79
1770 2310 2.742372 CAAGTCCTTGGCGTCGGG 60.742 66.667 0.00 0.00 36.95 5.14
1771 2311 4.016706 AAGTCCTTGGCGTCGGGG 62.017 66.667 0.00 0.00 0.00 5.73
1782 2322 3.319198 GTCGGGGCTCCTGTCCAA 61.319 66.667 0.00 0.00 40.42 3.53
1783 2323 2.528127 TCGGGGCTCCTGTCCAAA 60.528 61.111 0.00 0.00 40.42 3.28
1784 2324 2.045926 CGGGGCTCCTGTCCAAAG 60.046 66.667 0.00 0.00 40.42 2.77
1785 2325 2.356667 GGGGCTCCTGTCCAAAGG 59.643 66.667 0.00 0.00 40.42 3.11
1786 2326 2.356667 GGGCTCCTGTCCAAAGGG 59.643 66.667 0.00 0.00 38.01 3.95
1787 2327 2.361737 GGCTCCTGTCCAAAGGGC 60.362 66.667 0.00 0.00 37.96 5.19
1788 2328 2.436109 GCTCCTGTCCAAAGGGCA 59.564 61.111 0.00 0.00 37.96 5.36
1789 2329 1.228552 GCTCCTGTCCAAAGGGCAA 60.229 57.895 0.00 0.00 37.96 4.52
1790 2330 1.246737 GCTCCTGTCCAAAGGGCAAG 61.247 60.000 0.00 0.00 37.96 4.01
1791 2331 0.401738 CTCCTGTCCAAAGGGCAAGA 59.598 55.000 0.00 0.00 37.96 3.02
1792 2332 0.401738 TCCTGTCCAAAGGGCAAGAG 59.598 55.000 0.00 0.00 37.96 2.85
1793 2333 0.401738 CCTGTCCAAAGGGCAAGAGA 59.598 55.000 0.00 0.00 33.28 3.10
1794 2334 1.612726 CCTGTCCAAAGGGCAAGAGAG 60.613 57.143 0.00 0.00 33.28 3.20
1795 2335 1.349026 CTGTCCAAAGGGCAAGAGAGA 59.651 52.381 0.00 0.00 0.00 3.10
1796 2336 1.349026 TGTCCAAAGGGCAAGAGAGAG 59.651 52.381 0.00 0.00 0.00 3.20
1797 2337 1.625818 GTCCAAAGGGCAAGAGAGAGA 59.374 52.381 0.00 0.00 0.00 3.10
1798 2338 1.905215 TCCAAAGGGCAAGAGAGAGAG 59.095 52.381 0.00 0.00 0.00 3.20
1799 2339 1.905215 CCAAAGGGCAAGAGAGAGAGA 59.095 52.381 0.00 0.00 0.00 3.10
1800 2340 2.093553 CCAAAGGGCAAGAGAGAGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
1801 2341 1.194218 AAGGGCAAGAGAGAGAGAGC 58.806 55.000 0.00 0.00 0.00 4.09
1802 2342 0.336048 AGGGCAAGAGAGAGAGAGCT 59.664 55.000 0.00 0.00 0.00 4.09
1803 2343 1.194218 GGGCAAGAGAGAGAGAGCTT 58.806 55.000 0.00 0.00 0.00 3.74
1804 2344 2.024464 AGGGCAAGAGAGAGAGAGCTTA 60.024 50.000 0.00 0.00 0.00 3.09
1805 2345 2.362077 GGGCAAGAGAGAGAGAGCTTAG 59.638 54.545 0.00 0.00 0.00 2.18
1806 2346 2.362077 GGCAAGAGAGAGAGAGCTTAGG 59.638 54.545 0.00 0.00 0.00 2.69
1807 2347 2.362077 GCAAGAGAGAGAGAGCTTAGGG 59.638 54.545 0.00 0.00 0.00 3.53
1808 2348 3.897239 CAAGAGAGAGAGAGCTTAGGGA 58.103 50.000 0.00 0.00 0.00 4.20
1809 2349 4.277476 CAAGAGAGAGAGAGCTTAGGGAA 58.723 47.826 0.00 0.00 0.00 3.97
1810 2350 4.601406 AGAGAGAGAGAGCTTAGGGAAA 57.399 45.455 0.00 0.00 0.00 3.13
1811 2351 4.536765 AGAGAGAGAGAGCTTAGGGAAAG 58.463 47.826 0.00 0.00 38.32 2.62
1812 2352 3.636764 GAGAGAGAGAGCTTAGGGAAAGG 59.363 52.174 0.00 0.00 35.58 3.11
1813 2353 3.270960 AGAGAGAGAGCTTAGGGAAAGGA 59.729 47.826 0.00 0.00 35.58 3.36
1814 2354 3.636764 GAGAGAGAGCTTAGGGAAAGGAG 59.363 52.174 0.00 0.00 35.58 3.69
1815 2355 3.270960 AGAGAGAGCTTAGGGAAAGGAGA 59.729 47.826 0.00 0.00 35.58 3.71
1816 2356 4.027437 GAGAGAGCTTAGGGAAAGGAGAA 58.973 47.826 0.00 0.00 35.58 2.87
1817 2357 4.430441 AGAGAGCTTAGGGAAAGGAGAAA 58.570 43.478 0.00 0.00 35.58 2.52
1818 2358 4.469586 AGAGAGCTTAGGGAAAGGAGAAAG 59.530 45.833 0.00 0.00 35.58 2.62
1819 2359 4.430441 AGAGCTTAGGGAAAGGAGAAAGA 58.570 43.478 0.00 0.00 35.58 2.52
1820 2360 4.469586 AGAGCTTAGGGAAAGGAGAAAGAG 59.530 45.833 0.00 0.00 35.58 2.85
1821 2361 3.521531 AGCTTAGGGAAAGGAGAAAGAGG 59.478 47.826 0.00 0.00 35.58 3.69
1822 2362 3.371059 GCTTAGGGAAAGGAGAAAGAGGG 60.371 52.174 0.00 0.00 35.58 4.30
1823 2363 2.442262 AGGGAAAGGAGAAAGAGGGT 57.558 50.000 0.00 0.00 0.00 4.34
1824 2364 3.579742 AGGGAAAGGAGAAAGAGGGTA 57.420 47.619 0.00 0.00 0.00 3.69
1825 2365 3.455849 AGGGAAAGGAGAAAGAGGGTAG 58.544 50.000 0.00 0.00 0.00 3.18
1826 2366 2.506231 GGGAAAGGAGAAAGAGGGTAGG 59.494 54.545 0.00 0.00 0.00 3.18
1827 2367 3.451890 GGAAAGGAGAAAGAGGGTAGGA 58.548 50.000 0.00 0.00 0.00 2.94
1828 2368 3.452990 GGAAAGGAGAAAGAGGGTAGGAG 59.547 52.174 0.00 0.00 0.00 3.69
1829 2369 4.354662 GAAAGGAGAAAGAGGGTAGGAGA 58.645 47.826 0.00 0.00 0.00 3.71
1830 2370 4.421574 AAGGAGAAAGAGGGTAGGAGAA 57.578 45.455 0.00 0.00 0.00 2.87
1831 2371 3.989056 AGGAGAAAGAGGGTAGGAGAAG 58.011 50.000 0.00 0.00 0.00 2.85
1832 2372 3.598782 AGGAGAAAGAGGGTAGGAGAAGA 59.401 47.826 0.00 0.00 0.00 2.87
1833 2373 4.046103 AGGAGAAAGAGGGTAGGAGAAGAA 59.954 45.833 0.00 0.00 0.00 2.52
1834 2374 4.778427 GGAGAAAGAGGGTAGGAGAAGAAA 59.222 45.833 0.00 0.00 0.00 2.52
1835 2375 5.105106 GGAGAAAGAGGGTAGGAGAAGAAAG 60.105 48.000 0.00 0.00 0.00 2.62
1836 2376 4.780554 AGAAAGAGGGTAGGAGAAGAAAGG 59.219 45.833 0.00 0.00 0.00 3.11
1837 2377 4.421574 AAGAGGGTAGGAGAAGAAAGGA 57.578 45.455 0.00 0.00 0.00 3.36
1838 2378 3.715287 AGAGGGTAGGAGAAGAAAGGAC 58.285 50.000 0.00 0.00 0.00 3.85
1839 2379 3.077695 AGAGGGTAGGAGAAGAAAGGACA 59.922 47.826 0.00 0.00 0.00 4.02
1840 2380 3.445987 AGGGTAGGAGAAGAAAGGACAG 58.554 50.000 0.00 0.00 0.00 3.51
1841 2381 2.093394 GGGTAGGAGAAGAAAGGACAGC 60.093 54.545 0.00 0.00 0.00 4.40
1842 2382 2.567615 GGTAGGAGAAGAAAGGACAGCA 59.432 50.000 0.00 0.00 0.00 4.41
1843 2383 3.368948 GGTAGGAGAAGAAAGGACAGCAG 60.369 52.174 0.00 0.00 0.00 4.24
1844 2384 1.627834 AGGAGAAGAAAGGACAGCAGG 59.372 52.381 0.00 0.00 0.00 4.85
1845 2385 1.339535 GGAGAAGAAAGGACAGCAGGG 60.340 57.143 0.00 0.00 0.00 4.45
1846 2386 0.695347 AGAAGAAAGGACAGCAGGGG 59.305 55.000 0.00 0.00 0.00 4.79
1847 2387 0.693049 GAAGAAAGGACAGCAGGGGA 59.307 55.000 0.00 0.00 0.00 4.81
1848 2388 0.695347 AAGAAAGGACAGCAGGGGAG 59.305 55.000 0.00 0.00 0.00 4.30
1849 2389 1.204113 AGAAAGGACAGCAGGGGAGG 61.204 60.000 0.00 0.00 0.00 4.30
1850 2390 2.203549 GAAAGGACAGCAGGGGAGGG 62.204 65.000 0.00 0.00 0.00 4.30
1869 2409 2.519780 GAGGGAGTCCGGCTCGAT 60.520 66.667 16.39 9.48 45.03 3.59
1870 2410 2.519780 AGGGAGTCCGGCTCGATC 60.520 66.667 16.39 10.35 45.03 3.69
1871 2411 2.833582 GGGAGTCCGGCTCGATCA 60.834 66.667 16.39 0.00 45.03 2.92
1872 2412 2.423898 GGGAGTCCGGCTCGATCAA 61.424 63.158 16.39 0.00 45.03 2.57
1873 2413 1.066587 GGAGTCCGGCTCGATCAAG 59.933 63.158 16.39 0.00 45.03 3.02
1874 2414 1.384989 GGAGTCCGGCTCGATCAAGA 61.385 60.000 16.39 0.00 45.03 3.02
1875 2415 0.671251 GAGTCCGGCTCGATCAAGAT 59.329 55.000 9.63 0.00 34.13 2.40
1876 2416 0.387202 AGTCCGGCTCGATCAAGATG 59.613 55.000 0.00 0.00 0.00 2.90
1877 2417 0.598680 GTCCGGCTCGATCAAGATGG 60.599 60.000 0.00 0.00 0.00 3.51
1878 2418 1.301244 CCGGCTCGATCAAGATGGG 60.301 63.158 0.00 0.00 0.00 4.00
1879 2419 1.301244 CGGCTCGATCAAGATGGGG 60.301 63.158 0.00 0.00 0.00 4.96
1880 2420 1.748329 CGGCTCGATCAAGATGGGGA 61.748 60.000 0.00 0.00 0.00 4.81
1881 2421 0.469917 GGCTCGATCAAGATGGGGAA 59.530 55.000 0.00 0.00 0.00 3.97
1882 2422 1.542108 GGCTCGATCAAGATGGGGAAG 60.542 57.143 0.00 0.00 0.00 3.46
1883 2423 1.542108 GCTCGATCAAGATGGGGAAGG 60.542 57.143 0.00 0.00 0.00 3.46
1884 2424 1.071385 CTCGATCAAGATGGGGAAGGG 59.929 57.143 0.00 0.00 0.00 3.95
1885 2425 0.536006 CGATCAAGATGGGGAAGGGC 60.536 60.000 0.00 0.00 0.00 5.19
1886 2426 0.536006 GATCAAGATGGGGAAGGGCG 60.536 60.000 0.00 0.00 0.00 6.13
1887 2427 1.999634 ATCAAGATGGGGAAGGGCGG 62.000 60.000 0.00 0.00 0.00 6.13
1888 2428 4.129148 AAGATGGGGAAGGGCGGC 62.129 66.667 0.00 0.00 0.00 6.53
1979 2519 3.130227 GAGGGGATCGAGGAACGG 58.870 66.667 0.00 0.00 42.82 4.44
1980 2520 1.455217 GAGGGGATCGAGGAACGGA 60.455 63.158 0.00 0.00 42.82 4.69
1981 2521 1.455959 AGGGGATCGAGGAACGGAG 60.456 63.158 0.00 0.00 42.82 4.63
1982 2522 2.417936 GGGATCGAGGAACGGAGC 59.582 66.667 0.00 0.00 42.82 4.70
1983 2523 2.026301 GGATCGAGGAACGGAGCG 59.974 66.667 0.00 0.00 42.82 5.03
1984 2524 2.655685 GATCGAGGAACGGAGCGC 60.656 66.667 0.00 0.00 42.82 5.92
1985 2525 4.554363 ATCGAGGAACGGAGCGCG 62.554 66.667 0.00 0.00 42.82 6.86
2002 2542 4.265056 GGTGGTTGGTCGGGCACT 62.265 66.667 0.00 0.00 0.00 4.40
2003 2543 2.978010 GTGGTTGGTCGGGCACTG 60.978 66.667 0.00 0.00 0.00 3.66
2004 2544 3.164977 TGGTTGGTCGGGCACTGA 61.165 61.111 0.00 0.00 44.24 3.41
2015 2555 4.280436 TCGGGCACTGAAATAAAGAAGA 57.720 40.909 0.00 0.00 43.00 2.87
2016 2556 4.253685 TCGGGCACTGAAATAAAGAAGAG 58.746 43.478 0.00 0.00 43.00 2.85
2017 2557 3.375299 CGGGCACTGAAATAAAGAAGAGG 59.625 47.826 0.00 0.00 36.31 3.69
2018 2558 3.129462 GGGCACTGAAATAAAGAAGAGGC 59.871 47.826 0.00 0.00 0.00 4.70
2019 2559 3.758554 GGCACTGAAATAAAGAAGAGGCA 59.241 43.478 0.00 0.00 0.00 4.75
2020 2560 4.142513 GGCACTGAAATAAAGAAGAGGCAG 60.143 45.833 0.00 0.00 0.00 4.85
2021 2561 4.457257 GCACTGAAATAAAGAAGAGGCAGT 59.543 41.667 0.00 0.00 35.92 4.40
2022 2562 5.936054 CACTGAAATAAAGAAGAGGCAGTG 58.064 41.667 0.00 0.00 43.74 3.66
2023 2563 5.006386 ACTGAAATAAAGAAGAGGCAGTGG 58.994 41.667 0.00 0.00 34.42 4.00
2024 2564 4.335416 TGAAATAAAGAAGAGGCAGTGGG 58.665 43.478 0.00 0.00 0.00 4.61
2025 2565 3.372440 AATAAAGAAGAGGCAGTGGGG 57.628 47.619 0.00 0.00 0.00 4.96
2026 2566 1.742308 TAAAGAAGAGGCAGTGGGGT 58.258 50.000 0.00 0.00 0.00 4.95
2027 2567 0.111253 AAAGAAGAGGCAGTGGGGTG 59.889 55.000 0.00 0.00 0.00 4.61
2028 2568 1.783250 AAGAAGAGGCAGTGGGGTGG 61.783 60.000 0.00 0.00 0.00 4.61
2029 2569 3.927481 GAAGAGGCAGTGGGGTGGC 62.927 68.421 0.00 0.00 43.28 5.01
2045 2585 4.365505 GCGGCGGCTAGGAGGATC 62.366 72.222 9.78 0.00 35.83 3.36
2067 2607 4.232188 CCTAGGAAAAAGGGTTAGGGTC 57.768 50.000 1.05 0.00 0.00 4.46
2068 2608 3.850774 CCTAGGAAAAAGGGTTAGGGTCT 59.149 47.826 1.05 0.00 0.00 3.85
2069 2609 3.808834 AGGAAAAAGGGTTAGGGTCTG 57.191 47.619 0.00 0.00 0.00 3.51
2070 2610 3.061369 AGGAAAAAGGGTTAGGGTCTGT 58.939 45.455 0.00 0.00 0.00 3.41
2071 2611 3.465966 AGGAAAAAGGGTTAGGGTCTGTT 59.534 43.478 0.00 0.00 0.00 3.16
2072 2612 4.078805 AGGAAAAAGGGTTAGGGTCTGTTT 60.079 41.667 0.00 0.00 0.00 2.83
2073 2613 4.038763 GGAAAAAGGGTTAGGGTCTGTTTG 59.961 45.833 0.00 0.00 0.00 2.93
2074 2614 2.971901 AAGGGTTAGGGTCTGTTTGG 57.028 50.000 0.00 0.00 0.00 3.28
2075 2615 2.127651 AGGGTTAGGGTCTGTTTGGA 57.872 50.000 0.00 0.00 0.00 3.53
2076 2616 2.644151 AGGGTTAGGGTCTGTTTGGAT 58.356 47.619 0.00 0.00 0.00 3.41
2077 2617 2.993863 AGGGTTAGGGTCTGTTTGGATT 59.006 45.455 0.00 0.00 0.00 3.01
2078 2618 3.010250 AGGGTTAGGGTCTGTTTGGATTC 59.990 47.826 0.00 0.00 0.00 2.52
2079 2619 3.353557 GGTTAGGGTCTGTTTGGATTCC 58.646 50.000 0.00 0.00 0.00 3.01
2080 2620 3.245122 GGTTAGGGTCTGTTTGGATTCCA 60.245 47.826 0.00 0.00 0.00 3.53
2081 2621 2.887151 AGGGTCTGTTTGGATTCCAG 57.113 50.000 5.36 0.00 33.81 3.86
2082 2622 1.177401 GGGTCTGTTTGGATTCCAGC 58.823 55.000 5.36 4.14 33.81 4.85
2083 2623 1.177401 GGTCTGTTTGGATTCCAGCC 58.823 55.000 5.36 1.36 33.81 4.85
2084 2624 1.547675 GGTCTGTTTGGATTCCAGCCA 60.548 52.381 5.36 5.93 33.81 4.75
2085 2625 2.238521 GTCTGTTTGGATTCCAGCCAA 58.761 47.619 5.36 0.00 43.31 4.52
2086 2626 2.029918 GTCTGTTTGGATTCCAGCCAAC 60.030 50.000 5.36 8.45 44.58 3.77
2087 2627 1.962807 CTGTTTGGATTCCAGCCAACA 59.037 47.619 16.72 16.72 44.58 3.33
2088 2628 1.962807 TGTTTGGATTCCAGCCAACAG 59.037 47.619 14.62 0.00 44.58 3.16
2089 2629 0.968405 TTTGGATTCCAGCCAACAGC 59.032 50.000 5.36 0.00 44.58 4.40
2090 2630 0.899717 TTGGATTCCAGCCAACAGCC 60.900 55.000 5.36 0.00 45.47 4.85
2091 2631 2.409870 GGATTCCAGCCAACAGCCG 61.410 63.158 0.00 0.00 45.47 5.52
2092 2632 3.056313 GATTCCAGCCAACAGCCGC 62.056 63.158 0.00 0.00 45.47 6.53
2096 2636 4.124351 CAGCCAACAGCCGCCATG 62.124 66.667 0.00 0.00 45.47 3.66
2100 2640 3.682885 CAACAGCCGCCATGCCAA 61.683 61.111 0.00 0.00 0.00 4.52
2101 2641 2.916703 AACAGCCGCCATGCCAAA 60.917 55.556 0.00 0.00 0.00 3.28
2102 2642 2.506061 AACAGCCGCCATGCCAAAA 61.506 52.632 0.00 0.00 0.00 2.44
2103 2643 2.432972 CAGCCGCCATGCCAAAAC 60.433 61.111 0.00 0.00 0.00 2.43
2104 2644 2.916703 AGCCGCCATGCCAAAACA 60.917 55.556 0.00 0.00 0.00 2.83
2105 2645 2.265424 GCCGCCATGCCAAAACAT 59.735 55.556 0.00 0.00 0.00 2.71
2106 2646 1.375780 GCCGCCATGCCAAAACATT 60.376 52.632 0.00 0.00 0.00 2.71
2107 2647 1.637478 GCCGCCATGCCAAAACATTG 61.637 55.000 0.00 0.00 0.00 2.82
2108 2648 1.020333 CCGCCATGCCAAAACATTGG 61.020 55.000 3.22 3.22 44.82 3.16
2109 2649 0.037512 CGCCATGCCAAAACATTGGA 60.038 50.000 11.63 0.00 44.82 3.53
2110 2650 1.441738 GCCATGCCAAAACATTGGAC 58.558 50.000 11.63 3.90 44.82 4.02
2111 2651 1.712401 CCATGCCAAAACATTGGACG 58.288 50.000 11.63 0.00 44.82 4.79
2112 2652 1.000731 CCATGCCAAAACATTGGACGT 59.999 47.619 11.63 0.00 44.82 4.34
2113 2653 2.547642 CCATGCCAAAACATTGGACGTT 60.548 45.455 11.63 0.00 44.82 3.99
2114 2654 2.215907 TGCCAAAACATTGGACGTTG 57.784 45.000 11.63 0.00 44.82 4.10
2115 2655 1.751351 TGCCAAAACATTGGACGTTGA 59.249 42.857 11.63 0.00 44.82 3.18
2116 2656 2.124122 GCCAAAACATTGGACGTTGAC 58.876 47.619 11.63 0.00 44.82 3.18
2117 2657 2.738135 CCAAAACATTGGACGTTGACC 58.262 47.619 1.28 0.00 44.82 4.02
2118 2658 2.099921 CCAAAACATTGGACGTTGACCA 59.900 45.455 1.28 0.00 44.82 4.02
2119 2659 3.371168 CAAAACATTGGACGTTGACCAG 58.629 45.455 0.00 0.00 38.70 4.00
2120 2660 1.604604 AACATTGGACGTTGACCAGG 58.395 50.000 0.00 0.00 38.70 4.45
2121 2661 0.472471 ACATTGGACGTTGACCAGGT 59.528 50.000 0.00 0.00 38.70 4.00
2122 2662 0.874390 CATTGGACGTTGACCAGGTG 59.126 55.000 0.00 0.00 38.70 4.00
2123 2663 0.889186 ATTGGACGTTGACCAGGTGC 60.889 55.000 0.00 0.00 38.70 5.01
2124 2664 1.978455 TTGGACGTTGACCAGGTGCT 61.978 55.000 0.00 0.00 38.70 4.40
2125 2665 1.961277 GGACGTTGACCAGGTGCTG 60.961 63.158 0.00 0.00 0.00 4.41
2134 2674 3.377656 CAGGTGCTGGGTACTCGT 58.622 61.111 0.00 0.00 0.00 4.18
2135 2675 1.671742 CAGGTGCTGGGTACTCGTT 59.328 57.895 0.00 0.00 0.00 3.85
2136 2676 0.034896 CAGGTGCTGGGTACTCGTTT 59.965 55.000 0.00 0.00 0.00 3.60
2137 2677 0.034896 AGGTGCTGGGTACTCGTTTG 59.965 55.000 0.00 0.00 0.00 2.93
2138 2678 0.953960 GGTGCTGGGTACTCGTTTGG 60.954 60.000 0.00 0.00 0.00 3.28
2139 2679 0.034337 GTGCTGGGTACTCGTTTGGA 59.966 55.000 0.00 0.00 0.00 3.53
2140 2680 0.981183 TGCTGGGTACTCGTTTGGAT 59.019 50.000 0.00 0.00 0.00 3.41
2141 2681 1.338674 TGCTGGGTACTCGTTTGGATG 60.339 52.381 0.00 0.00 0.00 3.51
2142 2682 1.066430 GCTGGGTACTCGTTTGGATGA 60.066 52.381 0.00 0.00 0.00 2.92
2143 2683 2.420129 GCTGGGTACTCGTTTGGATGAT 60.420 50.000 0.00 0.00 0.00 2.45
2144 2684 3.198068 CTGGGTACTCGTTTGGATGATG 58.802 50.000 0.00 0.00 0.00 3.07
2145 2685 2.835156 TGGGTACTCGTTTGGATGATGA 59.165 45.455 0.00 0.00 0.00 2.92
2146 2686 3.195661 GGGTACTCGTTTGGATGATGAC 58.804 50.000 0.00 0.00 0.00 3.06
2147 2687 3.195661 GGTACTCGTTTGGATGATGACC 58.804 50.000 0.00 0.00 0.00 4.02
2148 2688 3.369052 GGTACTCGTTTGGATGATGACCA 60.369 47.826 0.00 0.00 35.47 4.02
2149 2689 3.417069 ACTCGTTTGGATGATGACCAA 57.583 42.857 0.00 0.00 44.27 3.67
2166 2706 1.925229 CAAATATTTGGCACGCCCTG 58.075 50.000 18.72 0.00 34.59 4.45
2167 2707 1.476085 CAAATATTTGGCACGCCCTGA 59.524 47.619 18.72 0.00 34.59 3.86
2168 2708 1.102978 AATATTTGGCACGCCCTGAC 58.897 50.000 5.42 0.00 34.56 3.51
2169 2709 0.255890 ATATTTGGCACGCCCTGACT 59.744 50.000 5.42 0.00 34.56 3.41
2170 2710 0.676466 TATTTGGCACGCCCTGACTG 60.676 55.000 5.42 0.00 34.56 3.51
2195 2735 2.352503 GCATCGCCAGTTCATTTTGT 57.647 45.000 0.00 0.00 0.00 2.83
2196 2736 2.676076 GCATCGCCAGTTCATTTTGTT 58.324 42.857 0.00 0.00 0.00 2.83
2197 2737 2.409378 GCATCGCCAGTTCATTTTGTTG 59.591 45.455 0.00 0.00 0.00 3.33
2198 2738 2.132740 TCGCCAGTTCATTTTGTTGC 57.867 45.000 0.00 0.00 0.00 4.17
2199 2739 1.139163 CGCCAGTTCATTTTGTTGCC 58.861 50.000 0.00 0.00 0.00 4.52
2200 2740 1.537776 CGCCAGTTCATTTTGTTGCCA 60.538 47.619 0.00 0.00 0.00 4.92
2201 2741 2.559440 GCCAGTTCATTTTGTTGCCAA 58.441 42.857 0.00 0.00 0.00 4.52
2202 2742 2.287644 GCCAGTTCATTTTGTTGCCAAC 59.712 45.455 0.00 0.00 0.00 3.77
2203 2743 3.795877 CCAGTTCATTTTGTTGCCAACT 58.204 40.909 9.30 0.00 0.00 3.16
2204 2744 3.803778 CCAGTTCATTTTGTTGCCAACTC 59.196 43.478 9.30 0.00 0.00 3.01
2205 2745 4.441913 CCAGTTCATTTTGTTGCCAACTCT 60.442 41.667 9.30 0.00 0.00 3.24
2206 2746 5.111293 CAGTTCATTTTGTTGCCAACTCTT 58.889 37.500 9.30 0.00 0.00 2.85
2207 2747 5.005971 CAGTTCATTTTGTTGCCAACTCTTG 59.994 40.000 9.30 2.15 0.00 3.02
2215 2755 2.677875 CCAACTCTTGGCCAGGGC 60.678 66.667 15.86 5.91 45.17 5.19
2216 2756 3.058160 CAACTCTTGGCCAGGGCG 61.058 66.667 15.86 9.15 43.06 6.13
2217 2757 3.570212 AACTCTTGGCCAGGGCGT 61.570 61.111 15.86 9.81 43.06 5.68
2218 2758 3.850098 AACTCTTGGCCAGGGCGTG 62.850 63.158 15.86 5.85 43.06 5.34
2240 2780 3.751246 GCTGGATGCTGCGCCAAA 61.751 61.111 4.18 0.00 38.95 3.28
2241 2781 2.488355 CTGGATGCTGCGCCAAAG 59.512 61.111 4.18 0.00 32.95 2.77
2242 2782 2.282391 TGGATGCTGCGCCAAAGT 60.282 55.556 4.18 0.00 0.00 2.66
2243 2783 1.870055 CTGGATGCTGCGCCAAAGTT 61.870 55.000 4.18 0.00 32.95 2.66
2244 2784 1.290009 GGATGCTGCGCCAAAGTTT 59.710 52.632 4.18 0.00 0.00 2.66
2245 2785 0.319813 GGATGCTGCGCCAAAGTTTT 60.320 50.000 4.18 0.00 0.00 2.43
2246 2786 0.785979 GATGCTGCGCCAAAGTTTTG 59.214 50.000 4.18 0.00 37.90 2.44
2254 2794 4.653555 CAAAGTTTTGGCTCGCCC 57.346 55.556 5.33 0.00 34.59 6.13
2255 2795 1.739049 CAAAGTTTTGGCTCGCCCA 59.261 52.632 5.33 0.00 43.51 5.36
2256 2796 0.597377 CAAAGTTTTGGCTCGCCCAC 60.597 55.000 5.33 0.00 45.34 4.61
2257 2797 2.070654 AAAGTTTTGGCTCGCCCACG 62.071 55.000 5.33 0.00 45.34 4.94
2258 2798 2.951475 AAGTTTTGGCTCGCCCACGA 62.951 55.000 5.33 0.00 45.34 4.35
2266 2806 4.924019 TCGCCCACGATTTGGTAG 57.076 55.556 0.00 0.00 45.12 3.18
2267 2807 1.219664 TCGCCCACGATTTGGTAGG 59.780 57.895 0.00 0.00 45.12 3.18
2268 2808 1.817941 CGCCCACGATTTGGTAGGG 60.818 63.158 0.00 0.00 45.25 3.53
2269 2809 4.235731 CCCACGATTTGGTAGGGC 57.764 61.111 0.00 0.00 45.25 5.19
2270 2810 1.607612 CCCACGATTTGGTAGGGCT 59.392 57.895 0.00 0.00 45.25 5.19
2271 2811 0.748005 CCCACGATTTGGTAGGGCTG 60.748 60.000 0.00 0.00 45.25 4.85
2272 2812 0.748005 CCACGATTTGGTAGGGCTGG 60.748 60.000 0.00 0.00 41.10 4.85
2273 2813 1.077716 ACGATTTGGTAGGGCTGGC 60.078 57.895 0.00 0.00 0.00 4.85
2274 2814 1.224592 CGATTTGGTAGGGCTGGCT 59.775 57.895 0.00 0.00 0.00 4.75
2275 2815 0.468226 CGATTTGGTAGGGCTGGCTA 59.532 55.000 0.00 0.00 0.00 3.93
2276 2816 1.541233 CGATTTGGTAGGGCTGGCTAG 60.541 57.143 0.00 0.00 0.00 3.42
2277 2817 0.846693 ATTTGGTAGGGCTGGCTAGG 59.153 55.000 0.00 0.00 0.00 3.02
2278 2818 1.279025 TTTGGTAGGGCTGGCTAGGG 61.279 60.000 0.00 0.00 0.00 3.53
2279 2819 3.561241 GGTAGGGCTGGCTAGGGC 61.561 72.222 0.00 0.00 37.82 5.19
2280 2820 2.768344 GTAGGGCTGGCTAGGGCA 60.768 66.667 0.00 0.00 40.87 5.36
2292 2832 1.325355 CTAGGGCAGCATCCAAATGG 58.675 55.000 0.00 0.00 33.19 3.16
2304 2844 3.788116 TCCAAATGGACTAGGGGTAGA 57.212 47.619 0.00 0.00 39.78 2.59
2305 2845 3.381335 TCCAAATGGACTAGGGGTAGAC 58.619 50.000 0.00 0.00 39.78 2.59
2306 2846 3.013648 TCCAAATGGACTAGGGGTAGACT 59.986 47.826 0.00 0.00 39.78 3.24
2307 2847 4.233521 TCCAAATGGACTAGGGGTAGACTA 59.766 45.833 0.00 0.00 39.78 2.59
2308 2848 4.966805 CCAAATGGACTAGGGGTAGACTAA 59.033 45.833 0.00 0.00 37.39 2.24
2309 2849 5.427481 CCAAATGGACTAGGGGTAGACTAAA 59.573 44.000 0.00 0.00 37.39 1.85
2310 2850 6.069847 CCAAATGGACTAGGGGTAGACTAAAA 60.070 42.308 0.00 0.00 37.39 1.52
2311 2851 7.399634 CAAATGGACTAGGGGTAGACTAAAAA 58.600 38.462 0.00 0.00 0.00 1.94
2312 2852 7.766736 AATGGACTAGGGGTAGACTAAAAAT 57.233 36.000 0.00 0.00 0.00 1.82
2313 2853 8.865244 AATGGACTAGGGGTAGACTAAAAATA 57.135 34.615 0.00 0.00 0.00 1.40
2314 2854 9.461734 AATGGACTAGGGGTAGACTAAAAATAT 57.538 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.425539 CCAAATTGCCATGTCAAACCC 58.574 47.619 0.00 0.00 0.00 4.11
217 223 2.093341 GGTATGCTTCTTCGGGTTGGTA 60.093 50.000 0.00 0.00 0.00 3.25
235 241 3.280295 TGTTGTTTGCTTCTTTCCGGTA 58.720 40.909 0.00 0.00 0.00 4.02
286 293 3.379372 GCATCATACTTGGTTGTGCATCT 59.621 43.478 0.00 0.00 0.00 2.90
327 334 2.104253 GCACTTTGCCATGCCATGC 61.104 57.895 0.00 0.00 37.42 4.06
348 356 6.542370 GCTCCACTTAATTTGTAGGATTGCTA 59.458 38.462 0.00 0.00 0.00 3.49
400 410 8.458573 AACTAAATAAGACATGTGGTGTTTCA 57.541 30.769 1.15 0.00 42.36 2.69
414 427 9.186837 ACATAACCGAGAGAGAACTAAATAAGA 57.813 33.333 0.00 0.00 0.00 2.10
508 528 3.078837 TGTTCCGGCCTCATTAAACTTC 58.921 45.455 0.00 0.00 0.00 3.01
529 550 9.366216 GGATTTTTCTAGACTTGTTGTTTTGTT 57.634 29.630 0.00 0.00 0.00 2.83
531 552 9.237846 GAGGATTTTTCTAGACTTGTTGTTTTG 57.762 33.333 0.00 0.00 0.00 2.44
532 553 8.966868 TGAGGATTTTTCTAGACTTGTTGTTTT 58.033 29.630 0.00 0.00 0.00 2.43
545 567 9.806203 CATATTTTGCACATGAGGATTTTTCTA 57.194 29.630 0.00 0.00 0.00 2.10
546 568 7.767198 CCATATTTTGCACATGAGGATTTTTCT 59.233 33.333 0.00 0.00 0.00 2.52
770 797 6.699575 ATGCTACTTTCATCCATGTTTACC 57.300 37.500 0.00 0.00 0.00 2.85
1129 1200 1.959899 CTGCTTCGACTTTGCGCGAT 61.960 55.000 12.10 0.00 36.31 4.58
1180 1251 0.252881 TCTTCCCTGCTCCCAGTCAT 60.253 55.000 0.00 0.00 37.38 3.06
1207 1279 4.862092 CGTCCTCTGCATCGCGCT 62.862 66.667 5.56 0.00 43.06 5.92
1251 1323 1.067354 CATTGTTGCTCTTCCCCAAGC 60.067 52.381 0.00 0.00 39.02 4.01
1346 1886 1.131315 CGTCTCTGCTTCGATCAGACA 59.869 52.381 12.24 2.40 35.81 3.41
1433 1973 3.774528 CTAGCGCCCAGGTCAGCA 61.775 66.667 2.29 0.00 0.00 4.41
1439 1979 1.455959 ACCTAGTCTAGCGCCCAGG 60.456 63.158 2.29 4.32 0.00 4.45
1499 2039 3.274095 GCTTCCTAACAAGCAGAGGAT 57.726 47.619 0.26 0.00 46.93 3.24
1512 2052 2.895680 CCGCTGCTCTGCTTCCTA 59.104 61.111 0.00 0.00 0.00 2.94
1646 2186 2.205462 AGACCTCCCCTGCACAGT 59.795 61.111 0.00 0.00 0.00 3.55
1660 2200 4.222847 GATCCCGCCGTCCCAGAC 62.223 72.222 0.00 0.00 0.00 3.51
1672 2212 4.547367 CGTTCCTGGCCGGATCCC 62.547 72.222 15.09 0.00 42.70 3.85
1681 2221 4.760047 CAGGTCGCCCGTTCCTGG 62.760 72.222 18.71 0.00 43.30 4.45
1682 2222 3.691342 TCAGGTCGCCCGTTCCTG 61.691 66.667 19.67 19.67 46.94 3.86
1683 2223 3.692406 GTCAGGTCGCCCGTTCCT 61.692 66.667 2.62 2.62 35.12 3.36
1708 2248 2.437716 TTTGCTTCGGATCCGGCC 60.438 61.111 32.79 20.71 40.25 6.13
1709 2249 1.745489 AGTTTGCTTCGGATCCGGC 60.745 57.895 32.79 27.75 40.25 6.13
1710 2250 0.673644 ACAGTTTGCTTCGGATCCGG 60.674 55.000 32.79 19.33 40.25 5.14
1711 2251 0.443869 CACAGTTTGCTTCGGATCCG 59.556 55.000 28.62 28.62 41.35 4.18
1712 2252 0.804989 CCACAGTTTGCTTCGGATCC 59.195 55.000 0.00 0.00 0.00 3.36
1713 2253 0.169009 GCCACAGTTTGCTTCGGATC 59.831 55.000 0.00 0.00 0.00 3.36
1714 2254 1.577328 CGCCACAGTTTGCTTCGGAT 61.577 55.000 0.00 0.00 0.00 4.18
1715 2255 2.250939 CGCCACAGTTTGCTTCGGA 61.251 57.895 0.00 0.00 0.00 4.55
1716 2256 2.252260 CGCCACAGTTTGCTTCGG 59.748 61.111 0.00 0.00 0.00 4.30
1717 2257 2.252260 CCGCCACAGTTTGCTTCG 59.748 61.111 0.00 0.00 0.00 3.79
1718 2258 2.050077 GCCGCCACAGTTTGCTTC 60.050 61.111 0.00 0.00 0.00 3.86
1719 2259 2.127232 AAGCCGCCACAGTTTGCTT 61.127 52.632 0.00 0.00 37.44 3.91
1720 2260 2.519302 AAGCCGCCACAGTTTGCT 60.519 55.556 0.00 0.00 0.00 3.91
1721 2261 2.355009 CAAGCCGCCACAGTTTGC 60.355 61.111 0.00 0.00 0.00 3.68
1722 2262 1.283793 CTCAAGCCGCCACAGTTTG 59.716 57.895 0.00 0.00 0.00 2.93
1723 2263 1.898574 CCTCAAGCCGCCACAGTTT 60.899 57.895 0.00 0.00 0.00 2.66
1724 2264 2.281761 CCTCAAGCCGCCACAGTT 60.282 61.111 0.00 0.00 0.00 3.16
1745 2285 3.777925 CAAGGACTTGCCGCGTCG 61.778 66.667 4.92 0.00 43.43 5.12
1746 2286 3.423154 CCAAGGACTTGCCGCGTC 61.423 66.667 4.92 0.00 43.43 5.19
1750 2290 3.423154 GACGCCAAGGACTTGCCG 61.423 66.667 13.01 13.01 45.38 5.69
1751 2291 3.423154 CGACGCCAAGGACTTGCC 61.423 66.667 6.54 0.00 39.16 4.52
1752 2292 3.423154 CCGACGCCAAGGACTTGC 61.423 66.667 6.54 2.21 39.16 4.01
1753 2293 2.742372 CCCGACGCCAAGGACTTG 60.742 66.667 5.09 5.09 40.13 3.16
1754 2294 4.016706 CCCCGACGCCAAGGACTT 62.017 66.667 0.00 0.00 0.00 3.01
1765 2305 2.804828 CTTTGGACAGGAGCCCCGAC 62.805 65.000 0.00 0.00 37.58 4.79
1766 2306 2.528127 TTTGGACAGGAGCCCCGA 60.528 61.111 0.00 0.00 37.58 5.14
1767 2307 2.045926 CTTTGGACAGGAGCCCCG 60.046 66.667 0.00 0.00 37.58 5.73
1768 2308 2.356667 CCTTTGGACAGGAGCCCC 59.643 66.667 0.00 0.00 35.71 5.80
1769 2309 2.356667 CCCTTTGGACAGGAGCCC 59.643 66.667 0.00 0.00 35.71 5.19
1770 2310 2.361737 GCCCTTTGGACAGGAGCC 60.362 66.667 0.00 0.00 35.71 4.70
1771 2311 1.228552 TTGCCCTTTGGACAGGAGC 60.229 57.895 0.00 0.00 35.71 4.70
1772 2312 0.401738 TCTTGCCCTTTGGACAGGAG 59.598 55.000 0.00 0.00 35.71 3.69
1773 2313 0.401738 CTCTTGCCCTTTGGACAGGA 59.598 55.000 0.00 0.00 35.71 3.86
1774 2314 0.401738 TCTCTTGCCCTTTGGACAGG 59.598 55.000 0.00 0.00 0.00 4.00
1775 2315 1.349026 TCTCTCTTGCCCTTTGGACAG 59.651 52.381 0.00 0.00 0.00 3.51
1776 2316 1.349026 CTCTCTCTTGCCCTTTGGACA 59.651 52.381 0.00 0.00 0.00 4.02
1777 2317 1.625818 TCTCTCTCTTGCCCTTTGGAC 59.374 52.381 0.00 0.00 0.00 4.02
1778 2318 1.905215 CTCTCTCTCTTGCCCTTTGGA 59.095 52.381 0.00 0.00 0.00 3.53
1779 2319 1.905215 TCTCTCTCTCTTGCCCTTTGG 59.095 52.381 0.00 0.00 0.00 3.28
1780 2320 2.677613 GCTCTCTCTCTCTTGCCCTTTG 60.678 54.545 0.00 0.00 0.00 2.77
1781 2321 1.554617 GCTCTCTCTCTCTTGCCCTTT 59.445 52.381 0.00 0.00 0.00 3.11
1782 2322 1.194218 GCTCTCTCTCTCTTGCCCTT 58.806 55.000 0.00 0.00 0.00 3.95
1783 2323 0.336048 AGCTCTCTCTCTCTTGCCCT 59.664 55.000 0.00 0.00 0.00 5.19
1784 2324 1.194218 AAGCTCTCTCTCTCTTGCCC 58.806 55.000 0.00 0.00 0.00 5.36
1785 2325 2.362077 CCTAAGCTCTCTCTCTCTTGCC 59.638 54.545 0.00 0.00 0.00 4.52
1786 2326 2.362077 CCCTAAGCTCTCTCTCTCTTGC 59.638 54.545 0.00 0.00 0.00 4.01
1787 2327 3.897239 TCCCTAAGCTCTCTCTCTCTTG 58.103 50.000 0.00 0.00 0.00 3.02
1788 2328 4.601406 TTCCCTAAGCTCTCTCTCTCTT 57.399 45.455 0.00 0.00 0.00 2.85
1789 2329 4.536765 CTTTCCCTAAGCTCTCTCTCTCT 58.463 47.826 0.00 0.00 0.00 3.10
1790 2330 3.636764 CCTTTCCCTAAGCTCTCTCTCTC 59.363 52.174 0.00 0.00 32.19 3.20
1791 2331 3.270960 TCCTTTCCCTAAGCTCTCTCTCT 59.729 47.826 0.00 0.00 32.19 3.10
1792 2332 3.636764 CTCCTTTCCCTAAGCTCTCTCTC 59.363 52.174 0.00 0.00 32.19 3.20
1793 2333 3.270960 TCTCCTTTCCCTAAGCTCTCTCT 59.729 47.826 0.00 0.00 32.19 3.10
1794 2334 3.637769 TCTCCTTTCCCTAAGCTCTCTC 58.362 50.000 0.00 0.00 32.19 3.20
1795 2335 3.767309 TCTCCTTTCCCTAAGCTCTCT 57.233 47.619 0.00 0.00 32.19 3.10
1796 2336 4.468153 TCTTTCTCCTTTCCCTAAGCTCTC 59.532 45.833 0.00 0.00 32.19 3.20
1797 2337 4.430441 TCTTTCTCCTTTCCCTAAGCTCT 58.570 43.478 0.00 0.00 32.19 4.09
1798 2338 4.383661 CCTCTTTCTCCTTTCCCTAAGCTC 60.384 50.000 0.00 0.00 32.19 4.09
1799 2339 3.521531 CCTCTTTCTCCTTTCCCTAAGCT 59.478 47.826 0.00 0.00 32.19 3.74
1800 2340 3.371059 CCCTCTTTCTCCTTTCCCTAAGC 60.371 52.174 0.00 0.00 32.19 3.09
1801 2341 3.847184 ACCCTCTTTCTCCTTTCCCTAAG 59.153 47.826 0.00 0.00 0.00 2.18
1802 2342 3.883135 ACCCTCTTTCTCCTTTCCCTAA 58.117 45.455 0.00 0.00 0.00 2.69
1803 2343 3.579742 ACCCTCTTTCTCCTTTCCCTA 57.420 47.619 0.00 0.00 0.00 3.53
1804 2344 2.442262 ACCCTCTTTCTCCTTTCCCT 57.558 50.000 0.00 0.00 0.00 4.20
1805 2345 2.506231 CCTACCCTCTTTCTCCTTTCCC 59.494 54.545 0.00 0.00 0.00 3.97
1806 2346 3.451890 TCCTACCCTCTTTCTCCTTTCC 58.548 50.000 0.00 0.00 0.00 3.13
1807 2347 4.354662 TCTCCTACCCTCTTTCTCCTTTC 58.645 47.826 0.00 0.00 0.00 2.62
1808 2348 4.421574 TCTCCTACCCTCTTTCTCCTTT 57.578 45.455 0.00 0.00 0.00 3.11
1809 2349 4.046103 TCTTCTCCTACCCTCTTTCTCCTT 59.954 45.833 0.00 0.00 0.00 3.36
1810 2350 3.598782 TCTTCTCCTACCCTCTTTCTCCT 59.401 47.826 0.00 0.00 0.00 3.69
1811 2351 3.983821 TCTTCTCCTACCCTCTTTCTCC 58.016 50.000 0.00 0.00 0.00 3.71
1812 2352 5.105106 CCTTTCTTCTCCTACCCTCTTTCTC 60.105 48.000 0.00 0.00 0.00 2.87
1813 2353 4.780554 CCTTTCTTCTCCTACCCTCTTTCT 59.219 45.833 0.00 0.00 0.00 2.52
1814 2354 4.778427 TCCTTTCTTCTCCTACCCTCTTTC 59.222 45.833 0.00 0.00 0.00 2.62
1815 2355 4.532916 GTCCTTTCTTCTCCTACCCTCTTT 59.467 45.833 0.00 0.00 0.00 2.52
1816 2356 4.098155 GTCCTTTCTTCTCCTACCCTCTT 58.902 47.826 0.00 0.00 0.00 2.85
1817 2357 3.077695 TGTCCTTTCTTCTCCTACCCTCT 59.922 47.826 0.00 0.00 0.00 3.69
1818 2358 3.442076 TGTCCTTTCTTCTCCTACCCTC 58.558 50.000 0.00 0.00 0.00 4.30
1819 2359 3.445987 CTGTCCTTTCTTCTCCTACCCT 58.554 50.000 0.00 0.00 0.00 4.34
1820 2360 2.093394 GCTGTCCTTTCTTCTCCTACCC 60.093 54.545 0.00 0.00 0.00 3.69
1821 2361 2.567615 TGCTGTCCTTTCTTCTCCTACC 59.432 50.000 0.00 0.00 0.00 3.18
1822 2362 3.368948 CCTGCTGTCCTTTCTTCTCCTAC 60.369 52.174 0.00 0.00 0.00 3.18
1823 2363 2.834549 CCTGCTGTCCTTTCTTCTCCTA 59.165 50.000 0.00 0.00 0.00 2.94
1824 2364 1.627834 CCTGCTGTCCTTTCTTCTCCT 59.372 52.381 0.00 0.00 0.00 3.69
1825 2365 1.339535 CCCTGCTGTCCTTTCTTCTCC 60.340 57.143 0.00 0.00 0.00 3.71
1826 2366 1.339535 CCCCTGCTGTCCTTTCTTCTC 60.340 57.143 0.00 0.00 0.00 2.87
1827 2367 0.695347 CCCCTGCTGTCCTTTCTTCT 59.305 55.000 0.00 0.00 0.00 2.85
1828 2368 0.693049 TCCCCTGCTGTCCTTTCTTC 59.307 55.000 0.00 0.00 0.00 2.87
1829 2369 0.695347 CTCCCCTGCTGTCCTTTCTT 59.305 55.000 0.00 0.00 0.00 2.52
1830 2370 1.204113 CCTCCCCTGCTGTCCTTTCT 61.204 60.000 0.00 0.00 0.00 2.52
1831 2371 1.301293 CCTCCCCTGCTGTCCTTTC 59.699 63.158 0.00 0.00 0.00 2.62
1832 2372 2.234296 CCCTCCCCTGCTGTCCTTT 61.234 63.158 0.00 0.00 0.00 3.11
1833 2373 2.612115 CCCTCCCCTGCTGTCCTT 60.612 66.667 0.00 0.00 0.00 3.36
1852 2392 2.519780 ATCGAGCCGGACTCCCTC 60.520 66.667 5.05 0.00 43.01 4.30
1853 2393 2.519780 GATCGAGCCGGACTCCCT 60.520 66.667 5.05 0.00 43.01 4.20
1854 2394 2.356818 CTTGATCGAGCCGGACTCCC 62.357 65.000 5.05 3.44 43.01 4.30
1855 2395 1.066587 CTTGATCGAGCCGGACTCC 59.933 63.158 5.05 0.00 43.01 3.85
1856 2396 0.671251 ATCTTGATCGAGCCGGACTC 59.329 55.000 5.05 10.97 42.47 3.36
1857 2397 0.387202 CATCTTGATCGAGCCGGACT 59.613 55.000 5.05 0.50 0.00 3.85
1858 2398 0.598680 CCATCTTGATCGAGCCGGAC 60.599 60.000 5.05 0.00 0.00 4.79
1859 2399 1.742146 CCATCTTGATCGAGCCGGA 59.258 57.895 5.05 0.00 0.00 5.14
1860 2400 1.301244 CCCATCTTGATCGAGCCGG 60.301 63.158 4.94 0.00 0.00 6.13
1861 2401 1.301244 CCCCATCTTGATCGAGCCG 60.301 63.158 4.94 0.00 0.00 5.52
1862 2402 0.469917 TTCCCCATCTTGATCGAGCC 59.530 55.000 4.94 0.00 0.00 4.70
1863 2403 1.542108 CCTTCCCCATCTTGATCGAGC 60.542 57.143 4.94 0.00 0.00 5.03
1864 2404 1.071385 CCCTTCCCCATCTTGATCGAG 59.929 57.143 3.24 3.24 0.00 4.04
1865 2405 1.131638 CCCTTCCCCATCTTGATCGA 58.868 55.000 0.00 0.00 0.00 3.59
1866 2406 0.536006 GCCCTTCCCCATCTTGATCG 60.536 60.000 0.00 0.00 0.00 3.69
1867 2407 0.536006 CGCCCTTCCCCATCTTGATC 60.536 60.000 0.00 0.00 0.00 2.92
1868 2408 1.533711 CGCCCTTCCCCATCTTGAT 59.466 57.895 0.00 0.00 0.00 2.57
1869 2409 2.679342 CCGCCCTTCCCCATCTTGA 61.679 63.158 0.00 0.00 0.00 3.02
1870 2410 2.124151 CCGCCCTTCCCCATCTTG 60.124 66.667 0.00 0.00 0.00 3.02
1871 2411 4.129148 GCCGCCCTTCCCCATCTT 62.129 66.667 0.00 0.00 0.00 2.40
1954 2494 2.279784 CGATCCCCTCGCTTCTGC 60.280 66.667 0.00 0.00 41.14 4.26
1962 2502 1.455217 TCCGTTCCTCGATCCCCTC 60.455 63.158 0.00 0.00 42.86 4.30
1963 2503 1.455959 CTCCGTTCCTCGATCCCCT 60.456 63.158 0.00 0.00 42.86 4.79
1964 2504 3.130227 CTCCGTTCCTCGATCCCC 58.870 66.667 0.00 0.00 42.86 4.81
1965 2505 2.417936 GCTCCGTTCCTCGATCCC 59.582 66.667 0.00 0.00 42.86 3.85
1966 2506 2.026301 CGCTCCGTTCCTCGATCC 59.974 66.667 0.00 0.00 42.86 3.36
1967 2507 2.655685 GCGCTCCGTTCCTCGATC 60.656 66.667 0.00 0.00 42.86 3.69
1968 2508 4.554363 CGCGCTCCGTTCCTCGAT 62.554 66.667 5.56 0.00 42.86 3.59
1985 2525 4.265056 AGTGCCCGACCAACCACC 62.265 66.667 0.00 0.00 0.00 4.61
1986 2526 2.951475 TTCAGTGCCCGACCAACCAC 62.951 60.000 0.00 0.00 0.00 4.16
1987 2527 2.272230 TTTCAGTGCCCGACCAACCA 62.272 55.000 0.00 0.00 0.00 3.67
1988 2528 0.893727 ATTTCAGTGCCCGACCAACC 60.894 55.000 0.00 0.00 0.00 3.77
1989 2529 1.816074 TATTTCAGTGCCCGACCAAC 58.184 50.000 0.00 0.00 0.00 3.77
1990 2530 2.570415 TTATTTCAGTGCCCGACCAA 57.430 45.000 0.00 0.00 0.00 3.67
1991 2531 2.039216 TCTTTATTTCAGTGCCCGACCA 59.961 45.455 0.00 0.00 0.00 4.02
1992 2532 2.706890 TCTTTATTTCAGTGCCCGACC 58.293 47.619 0.00 0.00 0.00 4.79
1993 2533 4.000988 TCTTCTTTATTTCAGTGCCCGAC 58.999 43.478 0.00 0.00 0.00 4.79
1994 2534 4.253685 CTCTTCTTTATTTCAGTGCCCGA 58.746 43.478 0.00 0.00 0.00 5.14
1995 2535 3.375299 CCTCTTCTTTATTTCAGTGCCCG 59.625 47.826 0.00 0.00 0.00 6.13
1996 2536 3.129462 GCCTCTTCTTTATTTCAGTGCCC 59.871 47.826 0.00 0.00 0.00 5.36
1997 2537 3.758554 TGCCTCTTCTTTATTTCAGTGCC 59.241 43.478 0.00 0.00 0.00 5.01
1998 2538 4.457257 ACTGCCTCTTCTTTATTTCAGTGC 59.543 41.667 0.00 0.00 32.96 4.40
1999 2539 5.106396 CCACTGCCTCTTCTTTATTTCAGTG 60.106 44.000 10.92 10.92 45.59 3.66
2000 2540 5.006386 CCACTGCCTCTTCTTTATTTCAGT 58.994 41.667 0.00 0.00 34.29 3.41
2001 2541 4.397417 CCCACTGCCTCTTCTTTATTTCAG 59.603 45.833 0.00 0.00 0.00 3.02
2002 2542 4.335416 CCCACTGCCTCTTCTTTATTTCA 58.665 43.478 0.00 0.00 0.00 2.69
2003 2543 3.696548 CCCCACTGCCTCTTCTTTATTTC 59.303 47.826 0.00 0.00 0.00 2.17
2004 2544 3.076032 ACCCCACTGCCTCTTCTTTATTT 59.924 43.478 0.00 0.00 0.00 1.40
2005 2545 2.649816 ACCCCACTGCCTCTTCTTTATT 59.350 45.455 0.00 0.00 0.00 1.40
2006 2546 2.025887 CACCCCACTGCCTCTTCTTTAT 60.026 50.000 0.00 0.00 0.00 1.40
2007 2547 1.351017 CACCCCACTGCCTCTTCTTTA 59.649 52.381 0.00 0.00 0.00 1.85
2008 2548 0.111253 CACCCCACTGCCTCTTCTTT 59.889 55.000 0.00 0.00 0.00 2.52
2009 2549 1.763770 CACCCCACTGCCTCTTCTT 59.236 57.895 0.00 0.00 0.00 2.52
2010 2550 2.227036 CCACCCCACTGCCTCTTCT 61.227 63.158 0.00 0.00 0.00 2.85
2011 2551 2.352805 CCACCCCACTGCCTCTTC 59.647 66.667 0.00 0.00 0.00 2.87
2012 2552 3.971702 GCCACCCCACTGCCTCTT 61.972 66.667 0.00 0.00 0.00 2.85
2028 2568 4.365505 GATCCTCCTAGCCGCCGC 62.366 72.222 0.00 0.00 0.00 6.53
2029 2569 3.686045 GGATCCTCCTAGCCGCCG 61.686 72.222 3.84 0.00 32.53 6.46
2030 2570 2.442519 TAGGGATCCTCCTAGCCGCC 62.443 65.000 12.58 0.00 38.30 6.13
2031 2571 0.968393 CTAGGGATCCTCCTAGCCGC 60.968 65.000 12.58 0.00 46.67 6.53
2032 2572 3.274601 CTAGGGATCCTCCTAGCCG 57.725 63.158 12.58 0.00 46.67 5.52
2036 2576 4.567857 CCTTTTTCCTAGGGATCCTCCTA 58.432 47.826 12.58 4.63 38.30 2.94
2037 2577 3.398490 CCTTTTTCCTAGGGATCCTCCT 58.602 50.000 12.58 3.53 40.79 3.69
2038 2578 3.866703 CCTTTTTCCTAGGGATCCTCC 57.133 52.381 12.58 0.00 34.61 4.30
2046 2586 3.850774 AGACCCTAACCCTTTTTCCTAGG 59.149 47.826 0.82 0.82 0.00 3.02
2047 2587 4.288887 ACAGACCCTAACCCTTTTTCCTAG 59.711 45.833 0.00 0.00 0.00 3.02
2048 2588 4.245308 ACAGACCCTAACCCTTTTTCCTA 58.755 43.478 0.00 0.00 0.00 2.94
2049 2589 3.061369 ACAGACCCTAACCCTTTTTCCT 58.939 45.455 0.00 0.00 0.00 3.36
2050 2590 3.520691 ACAGACCCTAACCCTTTTTCC 57.479 47.619 0.00 0.00 0.00 3.13
2051 2591 4.038763 CCAAACAGACCCTAACCCTTTTTC 59.961 45.833 0.00 0.00 0.00 2.29
2052 2592 3.964688 CCAAACAGACCCTAACCCTTTTT 59.035 43.478 0.00 0.00 0.00 1.94
2053 2593 3.205733 TCCAAACAGACCCTAACCCTTTT 59.794 43.478 0.00 0.00 0.00 2.27
2054 2594 2.787035 TCCAAACAGACCCTAACCCTTT 59.213 45.455 0.00 0.00 0.00 3.11
2055 2595 2.424793 TCCAAACAGACCCTAACCCTT 58.575 47.619 0.00 0.00 0.00 3.95
2056 2596 2.127651 TCCAAACAGACCCTAACCCT 57.872 50.000 0.00 0.00 0.00 4.34
2057 2597 3.353557 GAATCCAAACAGACCCTAACCC 58.646 50.000 0.00 0.00 0.00 4.11
2058 2598 3.245122 TGGAATCCAAACAGACCCTAACC 60.245 47.826 0.00 0.00 0.00 2.85
2059 2599 4.010349 CTGGAATCCAAACAGACCCTAAC 58.990 47.826 2.61 0.00 34.21 2.34
2060 2600 3.561313 GCTGGAATCCAAACAGACCCTAA 60.561 47.826 2.61 0.00 34.21 2.69
2061 2601 2.026262 GCTGGAATCCAAACAGACCCTA 60.026 50.000 2.61 0.00 34.21 3.53
2062 2602 1.272147 GCTGGAATCCAAACAGACCCT 60.272 52.381 2.61 0.00 34.21 4.34
2063 2603 1.177401 GCTGGAATCCAAACAGACCC 58.823 55.000 2.61 0.00 34.21 4.46
2064 2604 1.177401 GGCTGGAATCCAAACAGACC 58.823 55.000 2.61 0.00 34.15 3.85
2065 2605 1.909700 TGGCTGGAATCCAAACAGAC 58.090 50.000 2.61 0.00 40.67 3.51
2066 2606 2.238521 GTTGGCTGGAATCCAAACAGA 58.761 47.619 2.61 0.00 44.36 3.41
2067 2607 1.962807 TGTTGGCTGGAATCCAAACAG 59.037 47.619 12.54 0.00 44.36 3.16
2068 2608 1.962807 CTGTTGGCTGGAATCCAAACA 59.037 47.619 14.97 14.97 44.36 2.83
2069 2609 1.337167 GCTGTTGGCTGGAATCCAAAC 60.337 52.381 2.61 5.91 44.36 2.93
2070 2610 0.968405 GCTGTTGGCTGGAATCCAAA 59.032 50.000 2.61 0.00 44.36 3.28
2071 2611 0.899717 GGCTGTTGGCTGGAATCCAA 60.900 55.000 2.61 0.00 40.98 3.53
2072 2612 1.304381 GGCTGTTGGCTGGAATCCA 60.304 57.895 0.48 0.48 41.46 3.41
2073 2613 2.409870 CGGCTGTTGGCTGGAATCC 61.410 63.158 0.00 0.00 43.23 3.01
2074 2614 3.056313 GCGGCTGTTGGCTGGAATC 62.056 63.158 0.00 0.00 46.77 2.52
2075 2615 3.064324 GCGGCTGTTGGCTGGAAT 61.064 61.111 0.00 0.00 46.77 3.01
2083 2623 2.712325 TTTTGGCATGGCGGCTGTTG 62.712 55.000 15.27 6.65 41.89 3.33
2084 2624 2.506061 TTTTGGCATGGCGGCTGTT 61.506 52.632 15.27 0.00 41.89 3.16
2085 2625 2.916703 TTTTGGCATGGCGGCTGT 60.917 55.556 15.27 0.00 41.89 4.40
2086 2626 2.432972 GTTTTGGCATGGCGGCTG 60.433 61.111 15.27 7.30 41.89 4.85
2087 2627 1.829523 AATGTTTTGGCATGGCGGCT 61.830 50.000 15.27 0.00 41.89 5.52
2088 2628 1.375780 AATGTTTTGGCATGGCGGC 60.376 52.632 15.27 0.00 41.67 6.53
2089 2629 1.020333 CCAATGTTTTGGCATGGCGG 61.020 55.000 15.27 2.91 45.71 6.13
2090 2630 2.458162 CCAATGTTTTGGCATGGCG 58.542 52.632 15.27 0.00 45.71 5.69
2098 2638 3.371168 CTGGTCAACGTCCAATGTTTTG 58.629 45.455 0.00 0.00 34.35 2.44
2099 2639 2.360801 CCTGGTCAACGTCCAATGTTTT 59.639 45.455 0.00 0.00 34.35 2.43
2100 2640 1.953686 CCTGGTCAACGTCCAATGTTT 59.046 47.619 0.00 0.00 34.35 2.83
2101 2641 1.133915 ACCTGGTCAACGTCCAATGTT 60.134 47.619 0.00 0.00 34.35 2.71
2102 2642 0.472471 ACCTGGTCAACGTCCAATGT 59.528 50.000 0.00 0.00 34.35 2.71
2103 2643 0.874390 CACCTGGTCAACGTCCAATG 59.126 55.000 0.00 0.00 34.35 2.82
2104 2644 0.889186 GCACCTGGTCAACGTCCAAT 60.889 55.000 0.00 0.00 34.35 3.16
2105 2645 1.525077 GCACCTGGTCAACGTCCAA 60.525 57.895 0.00 0.00 34.35 3.53
2106 2646 2.110213 GCACCTGGTCAACGTCCA 59.890 61.111 0.00 0.00 0.00 4.02
2107 2647 1.961277 CAGCACCTGGTCAACGTCC 60.961 63.158 0.00 0.00 0.00 4.79
2108 2648 1.961277 CCAGCACCTGGTCAACGTC 60.961 63.158 0.00 0.00 45.82 4.34
2109 2649 2.111043 CCAGCACCTGGTCAACGT 59.889 61.111 0.00 0.00 45.82 3.99
2117 2657 0.034896 AAACGAGTACCCAGCACCTG 59.965 55.000 0.00 0.00 0.00 4.00
2118 2658 0.034896 CAAACGAGTACCCAGCACCT 59.965 55.000 0.00 0.00 0.00 4.00
2119 2659 0.953960 CCAAACGAGTACCCAGCACC 60.954 60.000 0.00 0.00 0.00 5.01
2120 2660 0.034337 TCCAAACGAGTACCCAGCAC 59.966 55.000 0.00 0.00 0.00 4.40
2121 2661 0.981183 ATCCAAACGAGTACCCAGCA 59.019 50.000 0.00 0.00 0.00 4.41
2122 2662 1.066430 TCATCCAAACGAGTACCCAGC 60.066 52.381 0.00 0.00 0.00 4.85
2123 2663 3.118775 TCATCATCCAAACGAGTACCCAG 60.119 47.826 0.00 0.00 0.00 4.45
2124 2664 2.835156 TCATCATCCAAACGAGTACCCA 59.165 45.455 0.00 0.00 0.00 4.51
2125 2665 3.195661 GTCATCATCCAAACGAGTACCC 58.804 50.000 0.00 0.00 0.00 3.69
2126 2666 3.195661 GGTCATCATCCAAACGAGTACC 58.804 50.000 0.00 0.00 0.00 3.34
2127 2667 3.857052 TGGTCATCATCCAAACGAGTAC 58.143 45.455 0.00 0.00 31.50 2.73
2128 2668 4.545208 TTGGTCATCATCCAAACGAGTA 57.455 40.909 0.00 0.00 41.25 2.59
2129 2669 3.417069 TTGGTCATCATCCAAACGAGT 57.583 42.857 0.00 0.00 41.25 4.18
2147 2687 1.476085 TCAGGGCGTGCCAAATATTTG 59.524 47.619 19.40 19.40 37.98 2.32
2148 2688 1.476488 GTCAGGGCGTGCCAAATATTT 59.524 47.619 13.76 0.00 37.98 1.40
2149 2689 1.102978 GTCAGGGCGTGCCAAATATT 58.897 50.000 13.76 0.00 37.98 1.28
2150 2690 0.255890 AGTCAGGGCGTGCCAAATAT 59.744 50.000 13.76 0.00 37.98 1.28
2151 2691 0.676466 CAGTCAGGGCGTGCCAAATA 60.676 55.000 13.76 0.00 37.98 1.40
2152 2692 1.973281 CAGTCAGGGCGTGCCAAAT 60.973 57.895 13.76 0.00 37.98 2.32
2153 2693 2.594303 CAGTCAGGGCGTGCCAAA 60.594 61.111 13.76 0.00 37.98 3.28
2176 2716 2.352503 ACAAAATGAACTGGCGATGC 57.647 45.000 0.00 0.00 0.00 3.91
2177 2717 2.409378 GCAACAAAATGAACTGGCGATG 59.591 45.455 0.00 0.00 0.00 3.84
2178 2718 2.610232 GGCAACAAAATGAACTGGCGAT 60.610 45.455 0.00 0.00 0.00 4.58
2179 2719 1.269517 GGCAACAAAATGAACTGGCGA 60.270 47.619 0.00 0.00 0.00 5.54
2180 2720 1.139163 GGCAACAAAATGAACTGGCG 58.861 50.000 0.00 0.00 0.00 5.69
2199 2739 3.058160 CGCCCTGGCCAAGAGTTG 61.058 66.667 7.01 0.00 37.98 3.16
2200 2740 3.570212 ACGCCCTGGCCAAGAGTT 61.570 61.111 7.01 0.00 37.98 3.01
2201 2741 4.335647 CACGCCCTGGCCAAGAGT 62.336 66.667 7.01 6.43 37.98 3.24
2237 2777 0.597377 GTGGGCGAGCCAAAACTTTG 60.597 55.000 16.65 0.00 37.98 2.77
2238 2778 1.739667 GTGGGCGAGCCAAAACTTT 59.260 52.632 16.65 0.00 37.98 2.66
2239 2779 2.551912 CGTGGGCGAGCCAAAACTT 61.552 57.895 16.65 0.00 41.33 2.66
2240 2780 2.978010 CGTGGGCGAGCCAAAACT 60.978 61.111 16.65 0.00 41.33 2.66
2241 2781 2.975799 TCGTGGGCGAGCCAAAAC 60.976 61.111 16.65 9.68 42.81 2.43
2254 2794 1.376609 GCCAGCCCTACCAAATCGTG 61.377 60.000 0.00 0.00 0.00 4.35
2255 2795 1.077716 GCCAGCCCTACCAAATCGT 60.078 57.895 0.00 0.00 0.00 3.73
2256 2796 0.468226 TAGCCAGCCCTACCAAATCG 59.532 55.000 0.00 0.00 0.00 3.34
2257 2797 1.202818 CCTAGCCAGCCCTACCAAATC 60.203 57.143 0.00 0.00 0.00 2.17
2258 2798 0.846693 CCTAGCCAGCCCTACCAAAT 59.153 55.000 0.00 0.00 0.00 2.32
2259 2799 1.279025 CCCTAGCCAGCCCTACCAAA 61.279 60.000 0.00 0.00 0.00 3.28
2260 2800 1.692749 CCCTAGCCAGCCCTACCAA 60.693 63.158 0.00 0.00 0.00 3.67
2261 2801 2.040884 CCCTAGCCAGCCCTACCA 60.041 66.667 0.00 0.00 0.00 3.25
2262 2802 3.561241 GCCCTAGCCAGCCCTACC 61.561 72.222 0.00 0.00 0.00 3.18
2263 2803 2.768344 TGCCCTAGCCAGCCCTAC 60.768 66.667 0.00 0.00 38.69 3.18
2264 2804 2.446610 CTGCCCTAGCCAGCCCTA 60.447 66.667 0.00 0.00 38.69 3.53
2272 2812 2.698060 CCATTTGGATGCTGCCCTAGC 61.698 57.143 0.00 0.00 45.16 3.42
2273 2813 1.133699 TCCATTTGGATGCTGCCCTAG 60.134 52.381 0.00 0.00 39.78 3.02
2274 2814 0.925558 TCCATTTGGATGCTGCCCTA 59.074 50.000 0.00 0.00 39.78 3.53
2275 2815 1.699137 TCCATTTGGATGCTGCCCT 59.301 52.632 0.00 0.00 39.78 5.19
2276 2816 4.360643 TCCATTTGGATGCTGCCC 57.639 55.556 0.00 0.00 39.78 5.36
2284 2824 3.013648 AGTCTACCCCTAGTCCATTTGGA 59.986 47.826 0.00 0.00 43.08 3.53
2285 2825 3.385115 AGTCTACCCCTAGTCCATTTGG 58.615 50.000 0.00 0.00 0.00 3.28
2286 2826 6.555463 TTTAGTCTACCCCTAGTCCATTTG 57.445 41.667 0.00 0.00 0.00 2.32
2287 2827 7.578458 TTTTTAGTCTACCCCTAGTCCATTT 57.422 36.000 0.00 0.00 0.00 2.32
2288 2828 7.766736 ATTTTTAGTCTACCCCTAGTCCATT 57.233 36.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.