Multiple sequence alignment - TraesCS3A01G130200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G130200 chr3A 100.000 6392 0 0 1 6392 107396703 107403094 0.000000e+00 11804
1 TraesCS3A01G130200 chr3A 91.837 98 8 0 1 98 669949386 669949289 3.110000e-28 137
2 TraesCS3A01G130200 chr3D 94.476 4562 118 50 361 4856 91218127 91222620 0.000000e+00 6905
3 TraesCS3A01G130200 chr3D 98.095 630 11 1 5242 5870 91222940 91223569 0.000000e+00 1096
4 TraesCS3A01G130200 chr3D 90.675 504 17 4 5892 6392 91223557 91224033 1.500000e-180 643
5 TraesCS3A01G130200 chr3D 95.473 243 11 0 4960 5202 91222619 91222861 7.770000e-104 388
6 TraesCS3A01G130200 chr3D 93.913 115 6 1 4847 4961 582123045 582122932 8.520000e-39 172
7 TraesCS3A01G130200 chr3D 75.346 361 79 10 3095 3450 248535603 248535958 1.430000e-36 165
8 TraesCS3A01G130200 chr3D 89.167 120 3 3 189 298 91211279 91211398 2.400000e-29 141
9 TraesCS3A01G130200 chr3B 93.155 4675 166 66 239 4856 140849538 140854115 0.000000e+00 6719
10 TraesCS3A01G130200 chr3B 91.203 898 47 14 5208 6073 140854391 140855288 0.000000e+00 1192
11 TraesCS3A01G130200 chr3B 95.161 248 12 0 4960 5207 140854114 140854361 6.010000e-105 392
12 TraesCS3A01G130200 chr3B 89.674 184 14 3 6211 6392 140855611 140855791 4.980000e-56 230
13 TraesCS3A01G130200 chr3B 88.333 180 21 0 1 180 477654386 477654207 3.880000e-52 217
14 TraesCS3A01G130200 chr3B 94.068 118 7 0 4855 4972 173555328 173555445 5.090000e-41 180
15 TraesCS3A01G130200 chr6D 85.758 990 93 21 2799 3776 83040639 83041592 0.000000e+00 1003
16 TraesCS3A01G130200 chr6D 90.000 180 18 0 1 180 48671966 48672145 3.850000e-57 233
17 TraesCS3A01G130200 chr6D 94.595 111 6 0 4854 4964 81674745 81674635 8.520000e-39 172
18 TraesCS3A01G130200 chr6B 88.974 390 27 6 2799 3184 157860141 157860518 9.700000e-128 468
19 TraesCS3A01G130200 chr6B 84.735 321 40 6 3464 3776 158066316 158066635 4.810000e-81 313
20 TraesCS3A01G130200 chr6B 85.417 288 27 7 2918 3203 157948997 157949271 1.050000e-72 285
21 TraesCS3A01G130200 chr6B 93.162 117 7 1 4846 4962 576017025 576017140 3.060000e-38 171
22 TraesCS3A01G130200 chr6A 95.652 161 6 1 2799 2958 99972895 99973055 2.290000e-64 257
23 TraesCS3A01G130200 chr4B 86.111 180 24 1 1 180 608257871 608257693 6.540000e-45 193
24 TraesCS3A01G130200 chr1A 85.876 177 25 0 1 177 59119245 59119421 8.460000e-44 189
25 TraesCS3A01G130200 chr1B 95.495 111 5 0 4855 4965 350969118 350969228 1.830000e-40 178
26 TraesCS3A01G130200 chr2B 94.690 113 5 1 4849 4961 123063421 123063310 2.370000e-39 174
27 TraesCS3A01G130200 chr2B 87.500 112 11 3 1 112 16118216 16118108 6.730000e-25 126
28 TraesCS3A01G130200 chr4A 93.103 116 8 0 4846 4961 699042402 699042517 3.060000e-38 171
29 TraesCS3A01G130200 chr4A 90.265 113 11 0 1 113 447320560 447320448 1.440000e-31 148
30 TraesCS3A01G130200 chr7D 91.270 126 8 3 4838 4962 479651703 479651826 1.100000e-37 169
31 TraesCS3A01G130200 chr7D 89.474 114 10 2 1 113 55781493 55781381 6.680000e-30 143
32 TraesCS3A01G130200 chr7A 92.437 119 7 2 4851 4969 692799358 692799474 1.100000e-37 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G130200 chr3A 107396703 107403094 6391 False 11804.00 11804 100.00000 1 6392 1 chr3A.!!$F1 6391
1 TraesCS3A01G130200 chr3D 91218127 91224033 5906 False 2258.00 6905 94.67975 361 6392 4 chr3D.!!$F3 6031
2 TraesCS3A01G130200 chr3B 140849538 140855791 6253 False 2133.25 6719 92.29825 239 6392 4 chr3B.!!$F2 6153
3 TraesCS3A01G130200 chr6D 83040639 83041592 953 False 1003.00 1003 85.75800 2799 3776 1 chr6D.!!$F2 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1051 0.317186 TTCGTTTTTCCTTTCCGCGC 60.317 50.000 0.00 0.00 0.00 6.86 F
1895 2008 0.107017 CCGATCACAAGGCCAGGAAT 60.107 55.000 5.01 0.00 0.00 3.01 F
2431 2545 0.898320 TGTCTTCTCCAGGCTGCTAC 59.102 55.000 9.56 0.93 0.00 3.58 F
3812 3938 1.745264 GGCTGCTCGAGGCTTAGAT 59.255 57.895 15.58 0.00 44.09 1.98 F
4000 4126 1.981256 TCTTTTGCCTCAGGGTTGTC 58.019 50.000 0.00 0.00 34.45 3.18 F
4150 4276 2.238521 GTGAAGATTTTGGAGGGTGCA 58.761 47.619 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2430 0.173935 TTATGTGCACGTACCTCCCG 59.826 55.000 18.34 0.00 0.00 5.14 R
3812 3938 3.855255 TCAAACCTGATGTCCTTCACA 57.145 42.857 0.00 0.00 40.18 3.58 R
4413 4539 0.991146 TGGTATGGAAGCTTGGAGCA 59.009 50.000 2.10 0.00 45.56 4.26 R
4949 5078 0.398522 TCGCCACATACTCCCTCCAT 60.399 55.000 0.00 0.00 0.00 3.41 R
4954 5083 0.468226 TCCAATCGCCACATACTCCC 59.532 55.000 0.00 0.00 0.00 4.30 R
5548 5720 0.663568 CGTATAAAGCGCCTCCGAGG 60.664 60.000 10.41 10.41 38.80 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.595362 AGCTAAGCCTCCTTTATTTAATTGTT 57.405 30.769 0.00 0.00 32.47 2.83
26 27 9.035890 AGCTAAGCCTCCTTTATTTAATTGTTT 57.964 29.630 0.00 0.00 32.47 2.83
31 32 9.528489 AGCCTCCTTTATTTAATTGTTTAGTGA 57.472 29.630 0.00 0.00 0.00 3.41
32 33 9.788960 GCCTCCTTTATTTAATTGTTTAGTGAG 57.211 33.333 0.00 0.00 0.00 3.51
44 45 8.519799 AATTGTTTAGTGAGAAAACTCCTTCA 57.480 30.769 0.00 0.00 37.64 3.02
45 46 6.920569 TGTTTAGTGAGAAAACTCCTTCAC 57.079 37.500 0.00 0.00 37.64 3.18
46 47 5.522460 TGTTTAGTGAGAAAACTCCTTCACG 59.478 40.000 0.00 0.00 37.64 4.35
47 48 3.821421 AGTGAGAAAACTCCTTCACGT 57.179 42.857 0.00 0.00 33.80 4.49
48 49 4.931661 AGTGAGAAAACTCCTTCACGTA 57.068 40.909 0.00 0.00 33.80 3.57
49 50 5.470047 AGTGAGAAAACTCCTTCACGTAT 57.530 39.130 0.00 0.00 33.80 3.06
50 51 5.855045 AGTGAGAAAACTCCTTCACGTATT 58.145 37.500 0.00 0.00 33.80 1.89
51 52 5.696724 AGTGAGAAAACTCCTTCACGTATTG 59.303 40.000 0.00 0.00 33.80 1.90
52 53 4.994852 TGAGAAAACTCCTTCACGTATTGG 59.005 41.667 0.00 0.00 0.00 3.16
53 54 4.969484 AGAAAACTCCTTCACGTATTGGT 58.031 39.130 0.00 0.00 0.00 3.67
54 55 5.374071 AGAAAACTCCTTCACGTATTGGTT 58.626 37.500 0.00 0.00 0.00 3.67
55 56 5.238650 AGAAAACTCCTTCACGTATTGGTTG 59.761 40.000 0.00 0.00 0.00 3.77
56 57 3.053831 ACTCCTTCACGTATTGGTTGG 57.946 47.619 0.00 0.00 0.00 3.77
57 58 2.370849 ACTCCTTCACGTATTGGTTGGT 59.629 45.455 0.00 0.00 0.00 3.67
58 59 3.579586 ACTCCTTCACGTATTGGTTGGTA 59.420 43.478 0.00 0.00 0.00 3.25
59 60 4.181578 CTCCTTCACGTATTGGTTGGTAG 58.818 47.826 0.00 0.00 0.00 3.18
60 61 3.579586 TCCTTCACGTATTGGTTGGTAGT 59.420 43.478 0.00 0.00 0.00 2.73
61 62 3.930848 CCTTCACGTATTGGTTGGTAGTC 59.069 47.826 0.00 0.00 0.00 2.59
62 63 4.322499 CCTTCACGTATTGGTTGGTAGTCT 60.322 45.833 0.00 0.00 0.00 3.24
63 64 4.877378 TCACGTATTGGTTGGTAGTCTT 57.123 40.909 0.00 0.00 0.00 3.01
64 65 5.217978 TCACGTATTGGTTGGTAGTCTTT 57.782 39.130 0.00 0.00 0.00 2.52
65 66 5.613329 TCACGTATTGGTTGGTAGTCTTTT 58.387 37.500 0.00 0.00 0.00 2.27
66 67 6.056884 TCACGTATTGGTTGGTAGTCTTTTT 58.943 36.000 0.00 0.00 0.00 1.94
67 68 6.017770 TCACGTATTGGTTGGTAGTCTTTTTG 60.018 38.462 0.00 0.00 0.00 2.44
68 69 5.151389 CGTATTGGTTGGTAGTCTTTTTGC 58.849 41.667 0.00 0.00 0.00 3.68
69 70 5.278071 CGTATTGGTTGGTAGTCTTTTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
70 71 5.806654 ATTGGTTGGTAGTCTTTTTGCAT 57.193 34.783 0.00 0.00 0.00 3.96
71 72 6.909550 ATTGGTTGGTAGTCTTTTTGCATA 57.090 33.333 0.00 0.00 0.00 3.14
72 73 5.957842 TGGTTGGTAGTCTTTTTGCATAG 57.042 39.130 0.00 0.00 0.00 2.23
73 74 4.764823 TGGTTGGTAGTCTTTTTGCATAGG 59.235 41.667 0.00 0.00 0.00 2.57
74 75 4.765339 GGTTGGTAGTCTTTTTGCATAGGT 59.235 41.667 0.00 0.00 0.00 3.08
75 76 5.243060 GGTTGGTAGTCTTTTTGCATAGGTT 59.757 40.000 0.00 0.00 0.00 3.50
76 77 6.239204 GGTTGGTAGTCTTTTTGCATAGGTTT 60.239 38.462 0.00 0.00 0.00 3.27
77 78 7.040271 GGTTGGTAGTCTTTTTGCATAGGTTTA 60.040 37.037 0.00 0.00 0.00 2.01
78 79 7.443259 TGGTAGTCTTTTTGCATAGGTTTAC 57.557 36.000 0.00 0.00 0.00 2.01
79 80 6.148150 TGGTAGTCTTTTTGCATAGGTTTACG 59.852 38.462 0.00 0.00 0.00 3.18
80 81 6.148315 GGTAGTCTTTTTGCATAGGTTTACGT 59.852 38.462 0.00 0.00 0.00 3.57
81 82 5.997385 AGTCTTTTTGCATAGGTTTACGTG 58.003 37.500 0.00 0.00 0.00 4.49
82 83 4.615541 GTCTTTTTGCATAGGTTTACGTGC 59.384 41.667 0.00 0.00 36.53 5.34
83 84 4.517453 TCTTTTTGCATAGGTTTACGTGCT 59.483 37.500 0.00 0.00 36.80 4.40
84 85 4.839668 TTTTGCATAGGTTTACGTGCTT 57.160 36.364 0.00 0.00 36.80 3.91
85 86 5.943706 TTTTGCATAGGTTTACGTGCTTA 57.056 34.783 0.00 0.00 36.80 3.09
86 87 5.539582 TTTGCATAGGTTTACGTGCTTAG 57.460 39.130 0.00 0.00 36.80 2.18
87 88 2.933906 TGCATAGGTTTACGTGCTTAGC 59.066 45.455 0.00 0.00 36.80 3.09
88 89 2.933906 GCATAGGTTTACGTGCTTAGCA 59.066 45.455 1.39 1.39 35.60 3.49
89 90 3.560068 GCATAGGTTTACGTGCTTAGCAT 59.440 43.478 11.03 0.00 41.91 3.79
90 91 4.035208 GCATAGGTTTACGTGCTTAGCATT 59.965 41.667 11.03 3.19 41.91 3.56
91 92 5.501715 CATAGGTTTACGTGCTTAGCATTG 58.498 41.667 11.03 9.03 41.91 2.82
92 93 2.747446 AGGTTTACGTGCTTAGCATTGG 59.253 45.455 11.03 5.77 41.91 3.16
93 94 2.486592 GGTTTACGTGCTTAGCATTGGT 59.513 45.455 11.03 11.52 41.91 3.67
94 95 3.057806 GGTTTACGTGCTTAGCATTGGTT 60.058 43.478 11.03 0.00 41.91 3.67
95 96 4.156182 GTTTACGTGCTTAGCATTGGTTC 58.844 43.478 11.03 0.00 41.91 3.62
96 97 2.185004 ACGTGCTTAGCATTGGTTCT 57.815 45.000 11.03 0.00 41.91 3.01
97 98 2.504367 ACGTGCTTAGCATTGGTTCTT 58.496 42.857 11.03 0.00 41.91 2.52
98 99 2.884639 ACGTGCTTAGCATTGGTTCTTT 59.115 40.909 11.03 0.00 41.91 2.52
99 100 3.317993 ACGTGCTTAGCATTGGTTCTTTT 59.682 39.130 11.03 0.00 41.91 2.27
100 101 4.202111 ACGTGCTTAGCATTGGTTCTTTTT 60.202 37.500 11.03 0.00 41.91 1.94
101 102 4.148696 CGTGCTTAGCATTGGTTCTTTTTG 59.851 41.667 11.03 0.00 41.91 2.44
102 103 4.057432 TGCTTAGCATTGGTTCTTTTTGC 58.943 39.130 1.39 0.00 31.71 3.68
103 104 3.121778 GCTTAGCATTGGTTCTTTTTGCG 59.878 43.478 0.00 0.00 38.32 4.85
104 105 2.153366 AGCATTGGTTCTTTTTGCGG 57.847 45.000 0.00 0.00 38.32 5.69
105 106 1.412343 AGCATTGGTTCTTTTTGCGGT 59.588 42.857 0.00 0.00 38.32 5.68
106 107 1.792367 GCATTGGTTCTTTTTGCGGTC 59.208 47.619 0.00 0.00 0.00 4.79
107 108 2.801342 GCATTGGTTCTTTTTGCGGTCA 60.801 45.455 0.00 0.00 0.00 4.02
108 109 2.570442 TTGGTTCTTTTTGCGGTCAC 57.430 45.000 0.00 0.00 0.00 3.67
109 110 1.757682 TGGTTCTTTTTGCGGTCACT 58.242 45.000 0.00 0.00 0.00 3.41
110 111 2.920524 TGGTTCTTTTTGCGGTCACTA 58.079 42.857 0.00 0.00 0.00 2.74
111 112 3.482436 TGGTTCTTTTTGCGGTCACTAT 58.518 40.909 0.00 0.00 0.00 2.12
112 113 4.643463 TGGTTCTTTTTGCGGTCACTATA 58.357 39.130 0.00 0.00 0.00 1.31
113 114 5.064558 TGGTTCTTTTTGCGGTCACTATAA 58.935 37.500 0.00 0.00 0.00 0.98
114 115 5.708230 TGGTTCTTTTTGCGGTCACTATAAT 59.292 36.000 0.00 0.00 0.00 1.28
115 116 6.879993 TGGTTCTTTTTGCGGTCACTATAATA 59.120 34.615 0.00 0.00 0.00 0.98
116 117 7.148373 TGGTTCTTTTTGCGGTCACTATAATAC 60.148 37.037 0.00 0.00 0.00 1.89
117 118 7.065443 GGTTCTTTTTGCGGTCACTATAATACT 59.935 37.037 0.00 0.00 0.00 2.12
118 119 7.766219 TCTTTTTGCGGTCACTATAATACTC 57.234 36.000 0.00 0.00 0.00 2.59
119 120 7.553334 TCTTTTTGCGGTCACTATAATACTCT 58.447 34.615 0.00 0.00 0.00 3.24
120 121 7.705325 TCTTTTTGCGGTCACTATAATACTCTC 59.295 37.037 0.00 0.00 0.00 3.20
121 122 6.710597 TTTGCGGTCACTATAATACTCTCT 57.289 37.500 0.00 0.00 0.00 3.10
122 123 5.943706 TGCGGTCACTATAATACTCTCTC 57.056 43.478 0.00 0.00 0.00 3.20
123 124 5.622180 TGCGGTCACTATAATACTCTCTCT 58.378 41.667 0.00 0.00 0.00 3.10
124 125 5.701750 TGCGGTCACTATAATACTCTCTCTC 59.298 44.000 0.00 0.00 0.00 3.20
125 126 5.701750 GCGGTCACTATAATACTCTCTCTCA 59.298 44.000 0.00 0.00 0.00 3.27
126 127 6.373216 GCGGTCACTATAATACTCTCTCTCAT 59.627 42.308 0.00 0.00 0.00 2.90
127 128 7.413657 GCGGTCACTATAATACTCTCTCTCATC 60.414 44.444 0.00 0.00 0.00 2.92
128 129 7.822334 CGGTCACTATAATACTCTCTCTCATCT 59.178 40.741 0.00 0.00 0.00 2.90
129 130 9.515226 GGTCACTATAATACTCTCTCTCATCTT 57.485 37.037 0.00 0.00 0.00 2.40
141 142 9.956640 ACTCTCTCTCATCTTTAATTGATTTGT 57.043 29.630 0.00 0.00 0.00 2.83
143 144 9.948964 TCTCTCTCATCTTTAATTGATTTGTCA 57.051 29.630 0.00 0.00 0.00 3.58
144 145 9.985318 CTCTCTCATCTTTAATTGATTTGTCAC 57.015 33.333 0.00 0.00 0.00 3.67
145 146 8.659491 TCTCTCATCTTTAATTGATTTGTCACG 58.341 33.333 0.00 0.00 0.00 4.35
146 147 8.322906 TCTCATCTTTAATTGATTTGTCACGT 57.677 30.769 0.00 0.00 0.00 4.49
147 148 8.783093 TCTCATCTTTAATTGATTTGTCACGTT 58.217 29.630 0.00 0.00 0.00 3.99
157 158 8.742554 ATTGATTTGTCACGTTATTTTTCTCC 57.257 30.769 0.00 0.00 0.00 3.71
158 159 7.504924 TGATTTGTCACGTTATTTTTCTCCT 57.495 32.000 0.00 0.00 0.00 3.69
159 160 7.936584 TGATTTGTCACGTTATTTTTCTCCTT 58.063 30.769 0.00 0.00 0.00 3.36
160 161 9.058174 TGATTTGTCACGTTATTTTTCTCCTTA 57.942 29.630 0.00 0.00 0.00 2.69
162 163 9.840427 ATTTGTCACGTTATTTTTCTCCTTATG 57.160 29.630 0.00 0.00 0.00 1.90
163 164 7.972832 TGTCACGTTATTTTTCTCCTTATGT 57.027 32.000 0.00 0.00 0.00 2.29
164 165 7.802738 TGTCACGTTATTTTTCTCCTTATGTG 58.197 34.615 0.00 0.00 0.00 3.21
165 166 7.094975 TGTCACGTTATTTTTCTCCTTATGTGG 60.095 37.037 0.00 0.00 0.00 4.17
166 167 6.027749 CACGTTATTTTTCTCCTTATGTGGC 58.972 40.000 0.00 0.00 0.00 5.01
167 168 5.708230 ACGTTATTTTTCTCCTTATGTGGCA 59.292 36.000 0.00 0.00 0.00 4.92
168 169 6.027749 CGTTATTTTTCTCCTTATGTGGCAC 58.972 40.000 11.55 11.55 0.00 5.01
169 170 6.330278 GTTATTTTTCTCCTTATGTGGCACC 58.670 40.000 16.26 0.00 0.00 5.01
170 171 3.806949 TTTTCTCCTTATGTGGCACCT 57.193 42.857 16.26 8.06 0.00 4.00
171 172 3.806949 TTTCTCCTTATGTGGCACCTT 57.193 42.857 16.26 5.25 0.00 3.50
172 173 3.806949 TTCTCCTTATGTGGCACCTTT 57.193 42.857 16.26 2.51 0.00 3.11
173 174 4.919774 TTCTCCTTATGTGGCACCTTTA 57.080 40.909 16.26 1.47 0.00 1.85
174 175 4.487714 TCTCCTTATGTGGCACCTTTAG 57.512 45.455 16.26 5.99 0.00 1.85
175 176 2.945668 CTCCTTATGTGGCACCTTTAGC 59.054 50.000 16.26 0.00 0.00 3.09
176 177 2.307392 TCCTTATGTGGCACCTTTAGCA 59.693 45.455 16.26 0.00 0.00 3.49
177 178 2.423538 CCTTATGTGGCACCTTTAGCAC 59.576 50.000 16.26 0.00 0.00 4.40
178 179 2.122783 TATGTGGCACCTTTAGCACC 57.877 50.000 16.26 0.00 0.00 5.01
179 180 0.405585 ATGTGGCACCTTTAGCACCT 59.594 50.000 16.26 0.00 0.00 4.00
180 181 1.060729 TGTGGCACCTTTAGCACCTA 58.939 50.000 16.26 0.00 0.00 3.08
181 182 1.633432 TGTGGCACCTTTAGCACCTAT 59.367 47.619 16.26 0.00 0.00 2.57
182 183 2.289565 GTGGCACCTTTAGCACCTATC 58.710 52.381 6.29 0.00 0.00 2.08
183 184 1.211949 TGGCACCTTTAGCACCTATCC 59.788 52.381 0.00 0.00 0.00 2.59
184 185 1.211949 GGCACCTTTAGCACCTATCCA 59.788 52.381 0.00 0.00 0.00 3.41
185 186 2.565841 GCACCTTTAGCACCTATCCAG 58.434 52.381 0.00 0.00 0.00 3.86
187 188 2.771943 CACCTTTAGCACCTATCCAGGA 59.228 50.000 0.00 0.00 45.91 3.86
188 189 3.041946 ACCTTTAGCACCTATCCAGGAG 58.958 50.000 0.00 0.00 45.91 3.69
194 195 2.787473 CACCTATCCAGGAGCAAACA 57.213 50.000 0.00 0.00 45.91 2.83
195 196 2.636830 CACCTATCCAGGAGCAAACAG 58.363 52.381 0.00 0.00 45.91 3.16
196 197 1.065126 ACCTATCCAGGAGCAAACAGC 60.065 52.381 0.00 0.00 45.91 4.40
197 198 1.748591 CCTATCCAGGAGCAAACAGCC 60.749 57.143 0.00 0.00 45.91 4.85
206 207 4.724697 CAAACAGCCGAGCGCGTG 62.725 66.667 8.43 3.84 44.76 5.34
213 214 4.430423 CCGAGCGCGTGCAAGAAC 62.430 66.667 24.79 7.77 46.23 3.01
214 215 3.701530 CGAGCGCGTGCAAGAACA 61.702 61.111 24.79 0.00 46.23 3.18
215 216 2.127609 GAGCGCGTGCAAGAACAC 60.128 61.111 24.79 1.54 46.23 3.32
216 217 3.579626 GAGCGCGTGCAAGAACACC 62.580 63.158 24.79 0.00 46.23 4.16
217 218 3.649986 GCGCGTGCAAGAACACCT 61.650 61.111 17.66 0.00 42.15 4.00
218 219 2.314647 GCGCGTGCAAGAACACCTA 61.315 57.895 17.66 0.00 42.15 3.08
219 220 1.491563 CGCGTGCAAGAACACCTAC 59.508 57.895 2.99 0.00 37.25 3.18
220 221 0.944311 CGCGTGCAAGAACACCTACT 60.944 55.000 2.99 0.00 37.25 2.57
221 222 1.667756 CGCGTGCAAGAACACCTACTA 60.668 52.381 2.99 0.00 37.25 1.82
222 223 1.993370 GCGTGCAAGAACACCTACTAG 59.007 52.381 2.99 0.00 37.25 2.57
223 224 2.609737 GCGTGCAAGAACACCTACTAGT 60.610 50.000 2.99 0.00 37.25 2.57
224 225 3.243336 CGTGCAAGAACACCTACTAGTC 58.757 50.000 0.00 0.00 37.25 2.59
225 226 3.057456 CGTGCAAGAACACCTACTAGTCT 60.057 47.826 0.00 0.00 37.25 3.24
226 227 4.155462 CGTGCAAGAACACCTACTAGTCTA 59.845 45.833 0.00 0.00 37.25 2.59
227 228 5.335426 CGTGCAAGAACACCTACTAGTCTAA 60.335 44.000 0.00 0.00 37.25 2.10
228 229 6.094061 GTGCAAGAACACCTACTAGTCTAAG 58.906 44.000 0.00 0.00 34.35 2.18
229 230 5.773680 TGCAAGAACACCTACTAGTCTAAGT 59.226 40.000 0.00 0.00 0.00 2.24
230 231 6.072064 TGCAAGAACACCTACTAGTCTAAGTC 60.072 42.308 0.00 0.00 0.00 3.01
231 232 6.072064 GCAAGAACACCTACTAGTCTAAGTCA 60.072 42.308 0.00 0.00 0.00 3.41
232 233 7.523380 GCAAGAACACCTACTAGTCTAAGTCAA 60.523 40.741 0.00 0.00 0.00 3.18
233 234 8.358148 CAAGAACACCTACTAGTCTAAGTCAAA 58.642 37.037 0.00 0.00 0.00 2.69
234 235 8.113173 AGAACACCTACTAGTCTAAGTCAAAG 57.887 38.462 0.00 0.00 0.00 2.77
235 236 7.943447 AGAACACCTACTAGTCTAAGTCAAAGA 59.057 37.037 0.00 0.00 0.00 2.52
236 237 8.653036 AACACCTACTAGTCTAAGTCAAAGAT 57.347 34.615 0.00 0.00 0.00 2.40
237 238 8.283699 ACACCTACTAGTCTAAGTCAAAGATC 57.716 38.462 0.00 0.00 0.00 2.75
254 255 6.916387 TCAAAGATCGTATGGAAGACGTATTC 59.084 38.462 14.46 14.46 41.11 1.75
265 266 1.677052 AGACGTATTCTTCCTCCGCTC 59.323 52.381 0.00 0.00 0.00 5.03
298 299 5.470368 TCTCCTCTTCATTCAAACACGTAG 58.530 41.667 0.00 0.00 0.00 3.51
299 300 5.243060 TCTCCTCTTCATTCAAACACGTAGA 59.757 40.000 0.00 0.00 0.00 2.59
300 301 6.037786 TCCTCTTCATTCAAACACGTAGAT 57.962 37.500 0.00 0.00 0.00 1.98
301 302 6.100004 TCCTCTTCATTCAAACACGTAGATC 58.900 40.000 0.00 0.00 0.00 2.75
303 304 6.536582 CCTCTTCATTCAAACACGTAGATCAT 59.463 38.462 0.00 0.00 0.00 2.45
358 363 0.684479 GGAGGAATCCAAAGCACCCC 60.684 60.000 0.61 0.00 0.00 4.95
410 415 2.872370 CTGGAATTAGCAAAGCACAGC 58.128 47.619 0.00 0.00 0.00 4.40
460 465 5.499935 CGAAAGCAGCAAAGAGATAATGAG 58.500 41.667 0.00 0.00 0.00 2.90
463 468 2.292845 GCAGCAAAGAGATAATGAGCCC 59.707 50.000 0.00 0.00 0.00 5.19
530 549 3.357079 CCACCACTTGTCGCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
658 677 2.046285 CGCCTCCGCTCCCATTTTT 61.046 57.895 0.00 0.00 0.00 1.94
706 737 0.738412 CACCCTACTTAACCACGCGG 60.738 60.000 12.47 0.00 38.77 6.46
867 937 1.008767 GATCGCTAGGGTTCGTCCG 60.009 63.158 6.70 0.00 37.00 4.79
868 938 3.135056 ATCGCTAGGGTTCGTCCGC 62.135 63.158 6.70 0.00 37.00 5.54
870 940 4.525949 GCTAGGGTTCGTCCGCCC 62.526 72.222 0.00 0.00 45.16 6.13
916 986 3.225061 GTCCGTCCCCGATCTCCC 61.225 72.222 0.00 0.00 35.63 4.30
965 1035 0.882042 CCGGCCCTGATCTGATTTCG 60.882 60.000 0.00 0.45 0.00 3.46
981 1051 0.317186 TTCGTTTTTCCTTTCCGCGC 60.317 50.000 0.00 0.00 0.00 6.86
982 1052 2.072654 CGTTTTTCCTTTCCGCGCG 61.073 57.895 25.67 25.67 0.00 6.86
1258 1340 2.355481 CGCCCGAGGTATAACGCC 60.355 66.667 0.00 0.00 0.00 5.68
1315 1416 2.884012 TGTAGCTTGATTGTTGGGTGTG 59.116 45.455 0.00 0.00 0.00 3.82
1325 1426 6.299922 TGATTGTTGGGTGTGAGTAAATGTA 58.700 36.000 0.00 0.00 0.00 2.29
1345 1447 6.017400 TGTACTACGAGATTTCCTTTTCGT 57.983 37.500 3.81 3.81 46.63 3.85
1418 1526 1.144057 GTGTTCGCCTCCCGATCAT 59.856 57.895 0.00 0.00 46.81 2.45
1494 1603 9.213799 ACTGTTACATCATTGTTTGTTTGTTTT 57.786 25.926 0.00 0.00 37.28 2.43
1497 1606 6.492007 ACATCATTGTTTGTTTGTTTTGCA 57.508 29.167 0.00 0.00 29.55 4.08
1507 1616 5.903764 TGTTTGTTTTGCATTGTATCTGC 57.096 34.783 0.00 0.00 40.10 4.26
1508 1617 4.749099 TGTTTGTTTTGCATTGTATCTGCC 59.251 37.500 0.00 0.00 38.89 4.85
1613 1722 1.225704 GCCACTAGCCAGGAAGCAT 59.774 57.895 0.00 0.00 34.35 3.79
1791 1904 7.469181 GCTGTAACTGGGGAATCTATTTCATTG 60.469 40.741 0.00 0.00 35.94 2.82
1792 1905 6.833416 TGTAACTGGGGAATCTATTTCATTGG 59.167 38.462 0.00 0.00 35.94 3.16
1813 1926 4.202388 TGGCTATGCAGTATCATGACATGT 60.202 41.667 14.98 0.00 0.00 3.21
1847 1960 2.037136 GCGGCACACTGAATCTGCT 61.037 57.895 0.00 0.00 0.00 4.24
1877 1990 2.182537 CAGAATGCGCCCTTTGCC 59.817 61.111 4.18 0.00 36.24 4.52
1895 2008 0.107017 CCGATCACAAGGCCAGGAAT 60.107 55.000 5.01 0.00 0.00 3.01
2065 2178 1.072159 AGCGCTTTTCAGCTGGAGT 59.928 52.632 15.13 0.00 44.85 3.85
2217 2331 1.164411 CCTCCTTGTTGTTATGCGCA 58.836 50.000 14.96 14.96 0.00 6.09
2295 2409 3.401033 TCATGTCGTTTCAGTCCACAT 57.599 42.857 0.00 0.00 0.00 3.21
2316 2430 2.431057 TGCTTCCCTTCGGAGATTCTAC 59.569 50.000 0.00 0.00 40.10 2.59
2363 2477 3.753272 ACAAGTAGTAATGCACTGCCTTG 59.247 43.478 10.58 10.58 44.74 3.61
2388 2502 9.575868 TGTACCCTATTTGAAGTCAACAATTTA 57.424 29.630 0.00 0.00 35.28 1.40
2424 2538 3.423539 TGTTCCATTGTCTTCTCCAGG 57.576 47.619 0.00 0.00 0.00 4.45
2431 2545 0.898320 TGTCTTCTCCAGGCTGCTAC 59.102 55.000 9.56 0.93 0.00 3.58
2500 2614 7.448748 ACAATACACCTGAATTGGTTTCTAC 57.551 36.000 0.00 0.00 38.45 2.59
2501 2615 7.231467 ACAATACACCTGAATTGGTTTCTACT 58.769 34.615 0.00 0.00 38.45 2.57
2502 2616 7.724061 ACAATACACCTGAATTGGTTTCTACTT 59.276 33.333 0.00 0.00 38.45 2.24
2503 2617 9.226606 CAATACACCTGAATTGGTTTCTACTTA 57.773 33.333 0.00 0.00 38.45 2.24
2579 2693 6.926630 TGTTGGGCTTGAATATTTAGGTTT 57.073 33.333 0.00 0.00 0.00 3.27
2769 2883 7.179076 TCTACTTCCAGGGTTTATACTTGTC 57.821 40.000 0.00 0.00 0.00 3.18
3812 3938 1.745264 GGCTGCTCGAGGCTTAGAT 59.255 57.895 15.58 0.00 44.09 1.98
3871 3997 8.669243 CAACTTCTTTGACTTTCTAGTTTGACT 58.331 33.333 0.00 0.00 37.39 3.41
3872 3998 8.426881 ACTTCTTTGACTTTCTAGTTTGACTC 57.573 34.615 0.00 0.00 33.84 3.36
3990 4116 3.258722 TCCTTCCCAAATCTTTTGCCT 57.741 42.857 0.00 0.00 0.00 4.75
4000 4126 1.981256 TCTTTTGCCTCAGGGTTGTC 58.019 50.000 0.00 0.00 34.45 3.18
4150 4276 2.238521 GTGAAGATTTTGGAGGGTGCA 58.761 47.619 0.00 0.00 0.00 4.57
4413 4539 3.025978 CAGTGGCAATCAATATGGTGGT 58.974 45.455 0.00 0.00 0.00 4.16
4472 4598 9.672673 TTCCTATTCTCTAATTCCTTTTCAGTG 57.327 33.333 0.00 0.00 0.00 3.66
4528 4654 5.356882 TTCATAACAGCAGTAGCAACAAC 57.643 39.130 0.00 0.00 45.49 3.32
4784 4913 2.837883 GCCCATGCTATGCCGTGTG 61.838 63.158 0.00 0.00 33.53 3.82
4815 4944 9.260002 ACATTTATGAAACAAACAGAAACATCC 57.740 29.630 0.00 0.00 32.69 3.51
4858 4987 9.717942 ACCAATATTTGCTCTTAGATCATACTC 57.282 33.333 0.00 0.00 0.00 2.59
4859 4988 9.160496 CCAATATTTGCTCTTAGATCATACTCC 57.840 37.037 0.00 0.00 0.00 3.85
4860 4989 9.160496 CAATATTTGCTCTTAGATCATACTCCC 57.840 37.037 0.00 0.00 0.00 4.30
4861 4990 8.677870 ATATTTGCTCTTAGATCATACTCCCT 57.322 34.615 0.00 0.00 0.00 4.20
4862 4991 6.412362 TTTGCTCTTAGATCATACTCCCTC 57.588 41.667 0.00 0.00 0.00 4.30
4863 4992 5.332106 TGCTCTTAGATCATACTCCCTCT 57.668 43.478 0.00 0.00 0.00 3.69
4864 4993 5.076182 TGCTCTTAGATCATACTCCCTCTG 58.924 45.833 0.00 0.00 0.00 3.35
4865 4994 5.076873 GCTCTTAGATCATACTCCCTCTGT 58.923 45.833 0.00 0.00 0.00 3.41
4866 4995 5.538433 GCTCTTAGATCATACTCCCTCTGTT 59.462 44.000 0.00 0.00 0.00 3.16
4867 4996 6.294508 GCTCTTAGATCATACTCCCTCTGTTC 60.295 46.154 0.00 0.00 0.00 3.18
4868 4997 5.765677 TCTTAGATCATACTCCCTCTGTTCG 59.234 44.000 0.00 0.00 0.00 3.95
4869 4998 3.226777 AGATCATACTCCCTCTGTTCGG 58.773 50.000 0.00 0.00 0.00 4.30
4870 4999 2.820728 TCATACTCCCTCTGTTCGGA 57.179 50.000 0.00 0.00 0.00 4.55
4871 5000 3.095912 TCATACTCCCTCTGTTCGGAA 57.904 47.619 0.00 0.00 0.00 4.30
4872 5001 3.643237 TCATACTCCCTCTGTTCGGAAT 58.357 45.455 0.00 0.00 0.00 3.01
4873 5002 4.030913 TCATACTCCCTCTGTTCGGAATT 58.969 43.478 0.00 0.00 0.00 2.17
4874 5003 5.205821 TCATACTCCCTCTGTTCGGAATTA 58.794 41.667 0.00 0.00 0.00 1.40
4875 5004 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
4876 5005 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
4877 5006 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
4878 5007 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4879 5008 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4880 5009 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4881 5010 4.322801 CCCTCTGTTCGGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
4882 5011 4.865365 CCTCTGTTCGGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
4883 5012 4.482386 TCTGTTCGGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
4884 5013 3.581755 TGTTCGGAATTACTTGTCTCGG 58.418 45.455 0.00 0.00 0.00 4.63
4885 5014 3.256383 TGTTCGGAATTACTTGTCTCGGA 59.744 43.478 0.00 0.00 0.00 4.55
4886 5015 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4887 5016 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4888 5017 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4889 5018 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4890 5019 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4891 5020 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4892 5021 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4893 5022 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4894 5023 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4895 5024 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4896 5025 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4897 5026 5.745227 ACTTGTCTCGGAAATGGATGTATT 58.255 37.500 0.00 0.00 0.00 1.89
4898 5027 6.180472 ACTTGTCTCGGAAATGGATGTATTT 58.820 36.000 0.00 0.00 33.19 1.40
4899 5028 7.335627 ACTTGTCTCGGAAATGGATGTATTTA 58.664 34.615 0.00 0.00 30.78 1.40
4900 5029 7.495934 ACTTGTCTCGGAAATGGATGTATTTAG 59.504 37.037 0.00 0.00 30.78 1.85
4901 5030 7.119709 TGTCTCGGAAATGGATGTATTTAGA 57.880 36.000 0.00 0.00 30.78 2.10
4902 5031 7.561251 TGTCTCGGAAATGGATGTATTTAGAA 58.439 34.615 0.00 0.00 30.78 2.10
4903 5032 7.494625 TGTCTCGGAAATGGATGTATTTAGAAC 59.505 37.037 0.00 0.00 30.78 3.01
4904 5033 7.711339 GTCTCGGAAATGGATGTATTTAGAACT 59.289 37.037 0.00 0.00 30.78 3.01
4905 5034 8.920174 TCTCGGAAATGGATGTATTTAGAACTA 58.080 33.333 0.00 0.00 30.78 2.24
4906 5035 9.542462 CTCGGAAATGGATGTATTTAGAACTAA 57.458 33.333 0.00 0.00 30.78 2.24
4907 5036 9.893634 TCGGAAATGGATGTATTTAGAACTAAA 57.106 29.630 9.03 9.03 39.12 1.85
4933 5062 9.664332 AATATGTCTAGATACATCCATTTCTGC 57.336 33.333 0.00 0.00 40.52 4.26
4934 5063 5.532557 TGTCTAGATACATCCATTTCTGCG 58.467 41.667 0.00 0.00 0.00 5.18
4935 5064 5.301805 TGTCTAGATACATCCATTTCTGCGA 59.698 40.000 0.00 0.00 0.00 5.10
4936 5065 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
4937 5066 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
4938 5067 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
4939 5068 5.371526 AGATACATCCATTTCTGCGACAAT 58.628 37.500 0.00 0.00 0.00 2.71
4940 5069 5.824624 AGATACATCCATTTCTGCGACAATT 59.175 36.000 0.00 0.00 0.00 2.32
4941 5070 6.992123 AGATACATCCATTTCTGCGACAATTA 59.008 34.615 0.00 0.00 0.00 1.40
4942 5071 5.895636 ACATCCATTTCTGCGACAATTAA 57.104 34.783 0.00 0.00 0.00 1.40
4943 5072 6.455360 ACATCCATTTCTGCGACAATTAAT 57.545 33.333 0.00 0.00 0.00 1.40
4944 5073 6.866480 ACATCCATTTCTGCGACAATTAATT 58.134 32.000 0.00 0.00 0.00 1.40
4945 5074 7.322664 ACATCCATTTCTGCGACAATTAATTT 58.677 30.769 0.00 0.00 0.00 1.82
4946 5075 7.489113 ACATCCATTTCTGCGACAATTAATTTC 59.511 33.333 0.00 0.00 0.00 2.17
4947 5076 6.027131 TCCATTTCTGCGACAATTAATTTCG 58.973 36.000 19.52 19.52 35.82 3.46
4948 5077 6.027131 CCATTTCTGCGACAATTAATTTCGA 58.973 36.000 24.24 14.42 34.62 3.71
4949 5078 6.526325 CCATTTCTGCGACAATTAATTTCGAA 59.474 34.615 24.24 17.85 34.62 3.71
4950 5079 7.220683 CCATTTCTGCGACAATTAATTTCGAAT 59.779 33.333 24.24 16.32 34.62 3.34
4951 5080 7.491254 TTTCTGCGACAATTAATTTCGAATG 57.509 32.000 24.24 16.63 34.62 2.67
4952 5081 5.568482 TCTGCGACAATTAATTTCGAATGG 58.432 37.500 24.24 15.11 34.62 3.16
4953 5082 5.352846 TCTGCGACAATTAATTTCGAATGGA 59.647 36.000 24.24 16.31 34.62 3.41
4954 5083 5.568482 TGCGACAATTAATTTCGAATGGAG 58.432 37.500 24.24 6.09 34.62 3.86
4955 5084 4.970003 GCGACAATTAATTTCGAATGGAGG 59.030 41.667 24.24 5.53 34.62 4.30
4956 5085 5.510671 CGACAATTAATTTCGAATGGAGGG 58.489 41.667 19.29 1.30 34.62 4.30
4957 5086 5.295787 CGACAATTAATTTCGAATGGAGGGA 59.704 40.000 19.29 0.00 34.62 4.20
4958 5087 6.511767 CGACAATTAATTTCGAATGGAGGGAG 60.512 42.308 19.29 0.80 34.62 4.30
4959 5088 6.187682 ACAATTAATTTCGAATGGAGGGAGT 58.812 36.000 0.00 0.00 0.00 3.85
4960 5089 7.343357 ACAATTAATTTCGAATGGAGGGAGTA 58.657 34.615 0.00 0.00 0.00 2.59
5088 5217 0.884704 CCTATGCCCACACATACCGC 60.885 60.000 0.00 0.00 0.00 5.68
5110 5239 6.201517 CGCGTCCTTGAAATTCATGAAATAT 58.798 36.000 13.09 1.28 0.00 1.28
5148 5277 7.069331 TCTGATTGTATTGGTGAAACTTTTGGT 59.931 33.333 0.00 0.00 36.74 3.67
5202 5331 5.831997 ACAAATTGAGTTAACTGCCACTTC 58.168 37.500 14.14 0.00 0.00 3.01
5214 5372 0.807496 GCCACTTCACTTCATCCTGC 59.193 55.000 0.00 0.00 0.00 4.85
5233 5391 6.003326 TCCTGCTGACAACTTTATTTCATCA 58.997 36.000 0.00 0.00 0.00 3.07
5234 5392 6.660521 TCCTGCTGACAACTTTATTTCATCAT 59.339 34.615 0.00 0.00 0.00 2.45
5235 5393 7.828717 TCCTGCTGACAACTTTATTTCATCATA 59.171 33.333 0.00 0.00 0.00 2.15
5237 5395 9.661187 CTGCTGACAACTTTATTTCATCATATC 57.339 33.333 0.00 0.00 0.00 1.63
5238 5396 9.176460 TGCTGACAACTTTATTTCATCATATCA 57.824 29.630 0.00 0.00 0.00 2.15
5548 5720 1.133025 GCTATGTTGATGTGGTGGTGC 59.867 52.381 0.00 0.00 0.00 5.01
5649 5821 6.239120 GCCTGGTAGTCGTGTTATAATCCTTA 60.239 42.308 0.00 0.00 0.00 2.69
5862 6037 2.290896 TGCTCAGATTTACCCCACCAAG 60.291 50.000 0.00 0.00 0.00 3.61
5878 6053 2.178580 CCAAGATTTTGGCAGCCCTTA 58.821 47.619 9.64 0.00 46.84 2.69
6132 6324 2.639327 AAGCCAAACATGCCCGCTC 61.639 57.895 0.00 0.00 0.00 5.03
6141 6333 0.731417 CATGCCCGCTCTTCTCAAAG 59.269 55.000 0.00 0.00 0.00 2.77
6142 6334 0.393537 ATGCCCGCTCTTCTCAAAGG 60.394 55.000 0.00 0.00 33.03 3.11
6173 6365 1.859302 AGTGGGTTTTGCACCTTGAA 58.141 45.000 0.00 0.00 46.38 2.69
6180 6374 1.032014 TTTGCACCTTGAAGAGTGGC 58.968 50.000 13.19 7.92 34.48 5.01
6202 6396 2.545537 TCTCATGGCATCAGAGCATC 57.454 50.000 0.00 0.00 35.83 3.91
6284 6710 4.872691 CAGAAGTTTGGTCCTGCTACTATG 59.127 45.833 0.00 0.00 0.00 2.23
6302 6728 2.479566 TGGAAAGAAGCTGCTGTAGG 57.520 50.000 1.35 0.00 0.00 3.18
6307 6733 0.036577 AGAAGCTGCTGTAGGCTGTG 60.037 55.000 1.35 0.00 42.39 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.595362 AACAATTAAATAAAGGAGGCTTAGCT 57.405 30.769 3.59 0.00 0.00 3.32
5 6 9.528489 TCACTAAACAATTAAATAAAGGAGGCT 57.472 29.630 0.00 0.00 0.00 4.58
6 7 9.788960 CTCACTAAACAATTAAATAAAGGAGGC 57.211 33.333 0.00 0.00 0.00 4.70
30 31 4.995487 ACCAATACGTGAAGGAGTTTTCTC 59.005 41.667 0.00 0.00 45.49 2.87
31 32 4.969484 ACCAATACGTGAAGGAGTTTTCT 58.031 39.130 0.00 0.00 0.00 2.52
32 33 5.449304 CAACCAATACGTGAAGGAGTTTTC 58.551 41.667 0.00 0.00 0.00 2.29
33 34 4.277423 CCAACCAATACGTGAAGGAGTTTT 59.723 41.667 0.00 0.00 0.00 2.43
34 35 3.818773 CCAACCAATACGTGAAGGAGTTT 59.181 43.478 0.00 0.00 0.00 2.66
35 36 3.181448 ACCAACCAATACGTGAAGGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
36 37 2.370849 ACCAACCAATACGTGAAGGAGT 59.629 45.455 0.00 0.00 0.00 3.85
37 38 3.053831 ACCAACCAATACGTGAAGGAG 57.946 47.619 0.00 0.00 0.00 3.69
38 39 3.579586 ACTACCAACCAATACGTGAAGGA 59.420 43.478 0.00 0.00 0.00 3.36
39 40 3.930848 GACTACCAACCAATACGTGAAGG 59.069 47.826 0.00 0.00 0.00 3.46
40 41 4.817517 AGACTACCAACCAATACGTGAAG 58.182 43.478 0.00 0.00 0.00 3.02
41 42 4.877378 AGACTACCAACCAATACGTGAA 57.123 40.909 0.00 0.00 0.00 3.18
42 43 4.877378 AAGACTACCAACCAATACGTGA 57.123 40.909 0.00 0.00 0.00 4.35
43 44 5.934935 AAAAGACTACCAACCAATACGTG 57.065 39.130 0.00 0.00 0.00 4.49
44 45 5.278120 GCAAAAAGACTACCAACCAATACGT 60.278 40.000 0.00 0.00 0.00 3.57
45 46 5.151389 GCAAAAAGACTACCAACCAATACG 58.849 41.667 0.00 0.00 0.00 3.06
46 47 6.079424 TGCAAAAAGACTACCAACCAATAC 57.921 37.500 0.00 0.00 0.00 1.89
47 48 6.909550 ATGCAAAAAGACTACCAACCAATA 57.090 33.333 0.00 0.00 0.00 1.90
48 49 5.806654 ATGCAAAAAGACTACCAACCAAT 57.193 34.783 0.00 0.00 0.00 3.16
49 50 5.242838 CCTATGCAAAAAGACTACCAACCAA 59.757 40.000 0.00 0.00 0.00 3.67
50 51 4.764823 CCTATGCAAAAAGACTACCAACCA 59.235 41.667 0.00 0.00 0.00 3.67
51 52 4.765339 ACCTATGCAAAAAGACTACCAACC 59.235 41.667 0.00 0.00 0.00 3.77
52 53 5.959618 ACCTATGCAAAAAGACTACCAAC 57.040 39.130 0.00 0.00 0.00 3.77
53 54 6.969993 AAACCTATGCAAAAAGACTACCAA 57.030 33.333 0.00 0.00 0.00 3.67
54 55 6.148150 CGTAAACCTATGCAAAAAGACTACCA 59.852 38.462 0.00 0.00 0.00 3.25
55 56 6.148315 ACGTAAACCTATGCAAAAAGACTACC 59.852 38.462 0.00 0.00 0.00 3.18
56 57 7.013529 CACGTAAACCTATGCAAAAAGACTAC 58.986 38.462 0.00 0.00 0.00 2.73
57 58 6.347888 GCACGTAAACCTATGCAAAAAGACTA 60.348 38.462 0.00 0.00 38.00 2.59
58 59 5.562113 GCACGTAAACCTATGCAAAAAGACT 60.562 40.000 0.00 0.00 38.00 3.24
59 60 4.615541 GCACGTAAACCTATGCAAAAAGAC 59.384 41.667 0.00 0.00 38.00 3.01
60 61 4.517453 AGCACGTAAACCTATGCAAAAAGA 59.483 37.500 0.00 0.00 40.63 2.52
61 62 4.794169 AGCACGTAAACCTATGCAAAAAG 58.206 39.130 0.00 0.00 40.63 2.27
62 63 4.839668 AGCACGTAAACCTATGCAAAAA 57.160 36.364 0.00 0.00 40.63 1.94
63 64 4.839668 AAGCACGTAAACCTATGCAAAA 57.160 36.364 0.00 0.00 40.63 2.44
64 65 4.142773 GCTAAGCACGTAAACCTATGCAAA 60.143 41.667 0.00 0.00 40.63 3.68
65 66 3.372822 GCTAAGCACGTAAACCTATGCAA 59.627 43.478 0.00 0.00 40.63 4.08
66 67 2.933906 GCTAAGCACGTAAACCTATGCA 59.066 45.455 0.00 0.00 40.63 3.96
67 68 2.933906 TGCTAAGCACGTAAACCTATGC 59.066 45.455 0.00 0.00 38.39 3.14
68 69 5.501715 CAATGCTAAGCACGTAAACCTATG 58.498 41.667 0.00 0.00 43.04 2.23
69 70 4.574828 CCAATGCTAAGCACGTAAACCTAT 59.425 41.667 0.00 0.00 43.04 2.57
70 71 3.936453 CCAATGCTAAGCACGTAAACCTA 59.064 43.478 0.00 0.00 43.04 3.08
71 72 2.747446 CCAATGCTAAGCACGTAAACCT 59.253 45.455 0.00 0.00 43.04 3.50
72 73 2.486592 ACCAATGCTAAGCACGTAAACC 59.513 45.455 0.00 0.00 43.04 3.27
73 74 3.824414 ACCAATGCTAAGCACGTAAAC 57.176 42.857 0.00 0.00 43.04 2.01
74 75 4.069304 AGAACCAATGCTAAGCACGTAAA 58.931 39.130 0.00 0.00 43.04 2.01
75 76 3.670625 AGAACCAATGCTAAGCACGTAA 58.329 40.909 0.00 0.00 43.04 3.18
76 77 3.328382 AGAACCAATGCTAAGCACGTA 57.672 42.857 0.00 0.00 43.04 3.57
77 78 2.185004 AGAACCAATGCTAAGCACGT 57.815 45.000 0.00 0.00 43.04 4.49
78 79 3.559238 AAAGAACCAATGCTAAGCACG 57.441 42.857 0.00 0.00 43.04 5.34
79 80 4.084380 GCAAAAAGAACCAATGCTAAGCAC 60.084 41.667 0.00 0.00 43.04 4.40
80 81 4.057432 GCAAAAAGAACCAATGCTAAGCA 58.943 39.130 0.00 0.00 44.86 3.91
81 82 3.121778 CGCAAAAAGAACCAATGCTAAGC 59.878 43.478 0.00 0.00 34.93 3.09
82 83 3.674753 CCGCAAAAAGAACCAATGCTAAG 59.325 43.478 0.00 0.00 34.93 2.18
83 84 3.068873 ACCGCAAAAAGAACCAATGCTAA 59.931 39.130 0.00 0.00 34.93 3.09
84 85 2.625790 ACCGCAAAAAGAACCAATGCTA 59.374 40.909 0.00 0.00 34.93 3.49
85 86 1.412343 ACCGCAAAAAGAACCAATGCT 59.588 42.857 0.00 0.00 34.93 3.79
86 87 1.792367 GACCGCAAAAAGAACCAATGC 59.208 47.619 0.00 0.00 0.00 3.56
87 88 2.794350 GTGACCGCAAAAAGAACCAATG 59.206 45.455 0.00 0.00 0.00 2.82
88 89 2.693074 AGTGACCGCAAAAAGAACCAAT 59.307 40.909 0.00 0.00 0.00 3.16
89 90 2.096248 AGTGACCGCAAAAAGAACCAA 58.904 42.857 0.00 0.00 0.00 3.67
90 91 1.757682 AGTGACCGCAAAAAGAACCA 58.242 45.000 0.00 0.00 0.00 3.67
91 92 5.616488 TTATAGTGACCGCAAAAAGAACC 57.384 39.130 0.00 0.00 0.00 3.62
92 93 7.971455 AGTATTATAGTGACCGCAAAAAGAAC 58.029 34.615 0.00 0.00 0.00 3.01
93 94 8.038944 AGAGTATTATAGTGACCGCAAAAAGAA 58.961 33.333 0.00 0.00 0.00 2.52
94 95 7.553334 AGAGTATTATAGTGACCGCAAAAAGA 58.447 34.615 0.00 0.00 0.00 2.52
95 96 7.707035 AGAGAGTATTATAGTGACCGCAAAAAG 59.293 37.037 0.00 0.00 0.00 2.27
96 97 7.553334 AGAGAGTATTATAGTGACCGCAAAAA 58.447 34.615 0.00 0.00 0.00 1.94
97 98 7.068348 AGAGAGAGTATTATAGTGACCGCAAAA 59.932 37.037 0.00 0.00 0.00 2.44
98 99 6.546403 AGAGAGAGTATTATAGTGACCGCAAA 59.454 38.462 0.00 0.00 0.00 3.68
99 100 6.062749 AGAGAGAGTATTATAGTGACCGCAA 58.937 40.000 0.00 0.00 0.00 4.85
100 101 5.622180 AGAGAGAGTATTATAGTGACCGCA 58.378 41.667 0.00 0.00 0.00 5.69
101 102 5.701750 TGAGAGAGAGTATTATAGTGACCGC 59.298 44.000 0.00 0.00 0.00 5.68
102 103 7.822334 AGATGAGAGAGAGTATTATAGTGACCG 59.178 40.741 0.00 0.00 0.00 4.79
103 104 9.515226 AAGATGAGAGAGAGTATTATAGTGACC 57.485 37.037 0.00 0.00 0.00 4.02
115 116 9.956640 ACAAATCAATTAAAGATGAGAGAGAGT 57.043 29.630 0.00 0.00 0.00 3.24
117 118 9.948964 TGACAAATCAATTAAAGATGAGAGAGA 57.051 29.630 0.00 0.00 0.00 3.10
118 119 9.985318 GTGACAAATCAATTAAAGATGAGAGAG 57.015 33.333 0.00 0.00 36.31 3.20
119 120 8.659491 CGTGACAAATCAATTAAAGATGAGAGA 58.341 33.333 0.00 0.00 36.31 3.10
120 121 8.446273 ACGTGACAAATCAATTAAAGATGAGAG 58.554 33.333 0.00 0.00 36.31 3.20
121 122 8.322906 ACGTGACAAATCAATTAAAGATGAGA 57.677 30.769 0.00 0.00 36.31 3.27
122 123 8.955061 AACGTGACAAATCAATTAAAGATGAG 57.045 30.769 0.00 0.00 36.31 2.90
131 132 9.191995 GGAGAAAAATAACGTGACAAATCAATT 57.808 29.630 0.00 0.00 36.31 2.32
132 133 8.576442 AGGAGAAAAATAACGTGACAAATCAAT 58.424 29.630 0.00 0.00 36.31 2.57
133 134 7.936584 AGGAGAAAAATAACGTGACAAATCAA 58.063 30.769 0.00 0.00 36.31 2.57
134 135 7.504924 AGGAGAAAAATAACGTGACAAATCA 57.495 32.000 0.00 0.00 0.00 2.57
136 137 9.840427 CATAAGGAGAAAAATAACGTGACAAAT 57.160 29.630 0.00 0.00 0.00 2.32
137 138 8.842280 ACATAAGGAGAAAAATAACGTGACAAA 58.158 29.630 0.00 0.00 0.00 2.83
138 139 8.286800 CACATAAGGAGAAAAATAACGTGACAA 58.713 33.333 0.00 0.00 0.00 3.18
139 140 7.094975 CCACATAAGGAGAAAAATAACGTGACA 60.095 37.037 0.00 0.00 0.00 3.58
140 141 7.241376 CCACATAAGGAGAAAAATAACGTGAC 58.759 38.462 0.00 0.00 0.00 3.67
141 142 6.128117 GCCACATAAGGAGAAAAATAACGTGA 60.128 38.462 0.00 0.00 0.00 4.35
142 143 6.027749 GCCACATAAGGAGAAAAATAACGTG 58.972 40.000 0.00 0.00 0.00 4.49
143 144 5.708230 TGCCACATAAGGAGAAAAATAACGT 59.292 36.000 0.00 0.00 0.00 3.99
144 145 6.027749 GTGCCACATAAGGAGAAAAATAACG 58.972 40.000 0.00 0.00 0.00 3.18
145 146 6.152831 AGGTGCCACATAAGGAGAAAAATAAC 59.847 38.462 0.00 0.00 0.00 1.89
146 147 6.252995 AGGTGCCACATAAGGAGAAAAATAA 58.747 36.000 0.00 0.00 0.00 1.40
147 148 5.826643 AGGTGCCACATAAGGAGAAAAATA 58.173 37.500 0.00 0.00 0.00 1.40
148 149 4.677182 AGGTGCCACATAAGGAGAAAAAT 58.323 39.130 0.00 0.00 0.00 1.82
149 150 4.112634 AGGTGCCACATAAGGAGAAAAA 57.887 40.909 0.00 0.00 0.00 1.94
150 151 3.806949 AGGTGCCACATAAGGAGAAAA 57.193 42.857 0.00 0.00 0.00 2.29
151 152 3.806949 AAGGTGCCACATAAGGAGAAA 57.193 42.857 0.00 0.00 0.00 2.52
152 153 3.806949 AAAGGTGCCACATAAGGAGAA 57.193 42.857 0.00 0.00 0.00 2.87
153 154 3.370527 GCTAAAGGTGCCACATAAGGAGA 60.371 47.826 0.00 0.00 0.00 3.71
154 155 2.945668 GCTAAAGGTGCCACATAAGGAG 59.054 50.000 0.00 0.00 0.00 3.69
155 156 2.307392 TGCTAAAGGTGCCACATAAGGA 59.693 45.455 0.00 0.00 0.00 3.36
156 157 2.423538 GTGCTAAAGGTGCCACATAAGG 59.576 50.000 0.00 0.00 0.00 2.69
157 158 2.423538 GGTGCTAAAGGTGCCACATAAG 59.576 50.000 0.00 0.00 0.00 1.73
158 159 2.041081 AGGTGCTAAAGGTGCCACATAA 59.959 45.455 0.00 0.00 0.00 1.90
159 160 1.633432 AGGTGCTAAAGGTGCCACATA 59.367 47.619 0.00 0.00 0.00 2.29
160 161 0.405585 AGGTGCTAAAGGTGCCACAT 59.594 50.000 0.00 0.00 0.00 3.21
161 162 1.060729 TAGGTGCTAAAGGTGCCACA 58.939 50.000 0.00 0.00 0.00 4.17
162 163 2.289565 GATAGGTGCTAAAGGTGCCAC 58.710 52.381 0.00 0.00 0.00 5.01
163 164 1.211949 GGATAGGTGCTAAAGGTGCCA 59.788 52.381 0.00 0.00 0.00 4.92
164 165 1.211949 TGGATAGGTGCTAAAGGTGCC 59.788 52.381 0.00 0.00 0.00 5.01
165 166 2.565841 CTGGATAGGTGCTAAAGGTGC 58.434 52.381 0.00 0.00 0.00 5.01
166 167 2.771943 TCCTGGATAGGTGCTAAAGGTG 59.228 50.000 0.00 0.00 44.88 4.00
167 168 3.041946 CTCCTGGATAGGTGCTAAAGGT 58.958 50.000 0.00 0.00 44.88 3.50
168 169 3.760580 CTCCTGGATAGGTGCTAAAGG 57.239 52.381 0.00 0.00 44.88 3.11
175 176 2.636830 CTGTTTGCTCCTGGATAGGTG 58.363 52.381 0.00 0.00 44.88 4.00
176 177 1.065126 GCTGTTTGCTCCTGGATAGGT 60.065 52.381 0.00 0.00 44.88 3.08
177 178 1.673168 GCTGTTTGCTCCTGGATAGG 58.327 55.000 0.00 0.00 46.06 2.57
178 179 1.673168 GGCTGTTTGCTCCTGGATAG 58.327 55.000 0.00 0.00 42.39 2.08
179 180 0.107703 CGGCTGTTTGCTCCTGGATA 60.108 55.000 0.00 0.00 42.39 2.59
180 181 1.377725 CGGCTGTTTGCTCCTGGAT 60.378 57.895 0.00 0.00 42.39 3.41
181 182 2.032528 CGGCTGTTTGCTCCTGGA 59.967 61.111 0.00 0.00 42.39 3.86
182 183 2.032528 TCGGCTGTTTGCTCCTGG 59.967 61.111 0.00 0.00 42.39 4.45
183 184 2.684843 GCTCGGCTGTTTGCTCCTG 61.685 63.158 0.00 0.00 42.39 3.86
184 185 2.359230 GCTCGGCTGTTTGCTCCT 60.359 61.111 0.00 0.00 42.39 3.69
185 186 3.793144 CGCTCGGCTGTTTGCTCC 61.793 66.667 0.00 0.00 42.39 4.70
186 187 4.451652 GCGCTCGGCTGTTTGCTC 62.452 66.667 0.00 0.00 42.39 4.26
189 190 4.724697 CACGCGCTCGGCTGTTTG 62.725 66.667 5.73 0.00 40.44 2.93
196 197 4.430423 GTTCTTGCACGCGCTCGG 62.430 66.667 5.73 0.00 40.69 4.63
197 198 3.701530 TGTTCTTGCACGCGCTCG 61.702 61.111 5.73 0.00 39.64 5.03
198 199 2.127609 GTGTTCTTGCACGCGCTC 60.128 61.111 5.73 0.00 39.64 5.03
199 200 2.709125 TAGGTGTTCTTGCACGCGCT 62.709 55.000 5.73 0.00 40.08 5.92
200 201 2.314647 TAGGTGTTCTTGCACGCGC 61.315 57.895 5.73 0.00 40.08 6.86
201 202 0.944311 AGTAGGTGTTCTTGCACGCG 60.944 55.000 3.53 3.53 40.08 6.01
202 203 1.993370 CTAGTAGGTGTTCTTGCACGC 59.007 52.381 0.00 0.00 40.08 5.34
203 204 3.057456 AGACTAGTAGGTGTTCTTGCACG 60.057 47.826 0.00 0.00 40.08 5.34
204 205 4.522722 AGACTAGTAGGTGTTCTTGCAC 57.477 45.455 0.00 0.00 38.56 4.57
205 206 5.773680 ACTTAGACTAGTAGGTGTTCTTGCA 59.226 40.000 0.00 0.00 0.00 4.08
206 207 6.072064 TGACTTAGACTAGTAGGTGTTCTTGC 60.072 42.308 0.00 0.00 0.00 4.01
207 208 7.450124 TGACTTAGACTAGTAGGTGTTCTTG 57.550 40.000 0.00 0.00 0.00 3.02
208 209 8.474710 TTTGACTTAGACTAGTAGGTGTTCTT 57.525 34.615 0.00 0.00 0.00 2.52
209 210 7.943447 TCTTTGACTTAGACTAGTAGGTGTTCT 59.057 37.037 0.00 0.00 0.00 3.01
210 211 8.108551 TCTTTGACTTAGACTAGTAGGTGTTC 57.891 38.462 0.00 0.00 0.00 3.18
211 212 8.653036 ATCTTTGACTTAGACTAGTAGGTGTT 57.347 34.615 0.00 0.00 0.00 3.32
212 213 7.066043 CGATCTTTGACTTAGACTAGTAGGTGT 59.934 40.741 0.00 0.00 0.00 4.16
213 214 7.066043 ACGATCTTTGACTTAGACTAGTAGGTG 59.934 40.741 0.00 0.00 0.00 4.00
214 215 7.111466 ACGATCTTTGACTTAGACTAGTAGGT 58.889 38.462 0.00 0.00 0.00 3.08
215 216 7.556733 ACGATCTTTGACTTAGACTAGTAGG 57.443 40.000 0.00 0.00 0.00 3.18
217 218 9.053840 CCATACGATCTTTGACTTAGACTAGTA 57.946 37.037 0.00 0.00 0.00 1.82
218 219 7.774157 TCCATACGATCTTTGACTTAGACTAGT 59.226 37.037 0.00 0.00 0.00 2.57
219 220 8.155821 TCCATACGATCTTTGACTTAGACTAG 57.844 38.462 0.00 0.00 0.00 2.57
220 221 8.515695 TTCCATACGATCTTTGACTTAGACTA 57.484 34.615 0.00 0.00 0.00 2.59
221 222 7.339721 TCTTCCATACGATCTTTGACTTAGACT 59.660 37.037 0.00 0.00 0.00 3.24
222 223 7.432838 GTCTTCCATACGATCTTTGACTTAGAC 59.567 40.741 0.00 0.00 0.00 2.59
223 224 7.481642 GTCTTCCATACGATCTTTGACTTAGA 58.518 38.462 0.00 0.00 0.00 2.10
224 225 6.415280 CGTCTTCCATACGATCTTTGACTTAG 59.585 42.308 0.00 0.00 42.90 2.18
225 226 6.127814 ACGTCTTCCATACGATCTTTGACTTA 60.128 38.462 2.27 0.00 42.90 2.24
226 227 5.103000 CGTCTTCCATACGATCTTTGACTT 58.897 41.667 0.00 0.00 42.90 3.01
227 228 4.158025 ACGTCTTCCATACGATCTTTGACT 59.842 41.667 2.27 0.00 42.90 3.41
228 229 4.421948 ACGTCTTCCATACGATCTTTGAC 58.578 43.478 2.27 0.00 42.90 3.18
229 230 4.713824 ACGTCTTCCATACGATCTTTGA 57.286 40.909 2.27 0.00 42.90 2.69
230 231 6.918569 AGAATACGTCTTCCATACGATCTTTG 59.081 38.462 9.81 0.00 42.90 2.77
231 232 7.040473 AGAATACGTCTTCCATACGATCTTT 57.960 36.000 9.81 0.00 42.90 2.52
232 233 6.636562 AGAATACGTCTTCCATACGATCTT 57.363 37.500 9.81 0.00 42.90 2.40
233 234 6.636562 AAGAATACGTCTTCCATACGATCT 57.363 37.500 9.81 1.05 43.49 2.75
254 255 1.528129 AAGCAAAAGAGCGGAGGAAG 58.472 50.000 0.00 0.00 40.15 3.46
265 266 6.742109 TGAATGAAGAGGAGAAAAGCAAAAG 58.258 36.000 0.00 0.00 0.00 2.27
327 332 2.826777 ATTCCTCCCGCTGCCTGTTG 62.827 60.000 0.00 0.00 0.00 3.33
336 341 1.378514 TGCTTTGGATTCCTCCCGC 60.379 57.895 3.95 2.53 41.29 6.13
340 345 1.032114 CGGGGTGCTTTGGATTCCTC 61.032 60.000 3.95 0.00 0.00 3.71
358 363 3.393467 GACTCTTTCTTCGCGCGCG 62.393 63.158 44.84 44.84 41.35 6.86
363 368 2.780993 CTCTCTCGACTCTTTCTTCGC 58.219 52.381 0.00 0.00 35.15 4.70
484 500 0.110010 GAAGCTCGAAAGGTGCAAGC 60.110 55.000 0.00 0.00 32.35 4.01
550 569 4.154347 GAGAGCCAGCGGGGAGTG 62.154 72.222 4.64 0.00 40.01 3.51
588 607 4.269523 TCACACACCTGGCCTGGC 62.270 66.667 27.51 11.05 0.00 4.85
589 608 2.033141 CTCACACACCTGGCCTGG 59.967 66.667 26.14 26.14 0.00 4.45
658 677 5.805486 CGTCCGATTGAAAAGTATTCTGAGA 59.195 40.000 0.00 0.00 0.00 3.27
965 1035 0.235404 TACGCGCGGAAAGGAAAAAC 59.765 50.000 35.22 0.00 0.00 2.43
981 1051 0.616679 TTCCTCCTCCCAACCCTACG 60.617 60.000 0.00 0.00 0.00 3.51
982 1052 1.490910 CATTCCTCCTCCCAACCCTAC 59.509 57.143 0.00 0.00 0.00 3.18
1192 1274 2.378634 GGTACTGGGGCTGCTGGAT 61.379 63.158 0.00 0.00 0.00 3.41
1258 1340 4.476628 CAAAAGGGGGAGATGATTTTGG 57.523 45.455 0.00 0.00 37.26 3.28
1302 1402 5.705609 ACATTTACTCACACCCAACAATC 57.294 39.130 0.00 0.00 0.00 2.67
1306 1406 5.346822 CGTAGTACATTTACTCACACCCAAC 59.653 44.000 0.38 0.00 39.43 3.77
1307 1407 5.243507 TCGTAGTACATTTACTCACACCCAA 59.756 40.000 0.38 0.00 39.43 4.12
1315 1416 9.583765 AAAGGAAATCTCGTAGTACATTTACTC 57.416 33.333 8.87 0.00 39.43 2.59
1325 1426 5.118203 CGAAACGAAAAGGAAATCTCGTAGT 59.882 40.000 0.00 0.00 43.29 2.73
1345 1447 2.410517 GCTATGCGACAAACGAACGAAA 60.411 45.455 0.14 0.00 45.77 3.46
1387 1495 1.421485 GAACACATTCTGCGAGCGG 59.579 57.895 0.00 0.00 31.55 5.52
1401 1509 0.251916 AAATGATCGGGAGGCGAACA 59.748 50.000 0.00 0.00 0.00 3.18
1404 1512 0.463654 CCAAAATGATCGGGAGGCGA 60.464 55.000 0.00 0.00 0.00 5.54
1418 1526 5.016890 AGGAAATATAACCCCACCTCCAAAA 59.983 40.000 0.00 0.00 0.00 2.44
1494 1603 5.379187 ACATTATGAGGCAGATACAATGCA 58.621 37.500 0.00 0.00 45.68 3.96
1497 1606 7.039714 TCGTCTACATTATGAGGCAGATACAAT 60.040 37.037 0.00 0.00 0.00 2.71
1507 1616 4.240888 CCATGCTCGTCTACATTATGAGG 58.759 47.826 0.00 0.00 31.79 3.86
1508 1617 4.876125 ACCATGCTCGTCTACATTATGAG 58.124 43.478 0.00 0.00 33.85 2.90
1574 1683 0.406361 TTCGGGTAGGTTGCCCAAAT 59.594 50.000 3.14 0.00 46.40 2.32
1578 1687 2.119029 GCATTCGGGTAGGTTGCCC 61.119 63.158 0.00 0.00 42.68 5.36
1636 1748 8.299570 GCATAATTTAACCCCAACATGAGATAG 58.700 37.037 0.00 0.00 0.00 2.08
1637 1749 7.040755 CGCATAATTTAACCCCAACATGAGATA 60.041 37.037 0.00 0.00 0.00 1.98
1638 1750 6.239008 CGCATAATTTAACCCCAACATGAGAT 60.239 38.462 0.00 0.00 0.00 2.75
1791 1904 4.321718 ACATGTCATGATACTGCATAGCC 58.678 43.478 19.77 0.00 0.00 3.93
1792 1905 5.936686 AACATGTCATGATACTGCATAGC 57.063 39.130 19.77 0.00 0.00 2.97
1813 1926 2.094494 TGCCGCTGAAAACAAGAACAAA 60.094 40.909 0.00 0.00 0.00 2.83
1847 1960 1.599518 ATTCTGCACGCGGTTTCCA 60.600 52.632 12.47 0.00 0.00 3.53
1877 1990 1.019673 CATTCCTGGCCTTGTGATCG 58.980 55.000 3.32 0.00 0.00 3.69
1895 2008 5.935945 TGTGTTACCTCAAAAGAAGGATCA 58.064 37.500 0.00 0.00 37.35 2.92
2172 2285 4.227197 TGGGGGCATAAAAGAAGTTGAAA 58.773 39.130 0.00 0.00 0.00 2.69
2316 2430 0.173935 TTATGTGCACGTACCTCCCG 59.826 55.000 18.34 0.00 0.00 5.14
2410 2524 0.990374 AGCAGCCTGGAGAAGACAAT 59.010 50.000 0.00 0.00 0.00 2.71
2424 2538 4.265320 GCATATTTTTCAAACCGTAGCAGC 59.735 41.667 0.00 0.00 0.00 5.25
2431 2545 7.406799 AACAAAGAGCATATTTTTCAAACCG 57.593 32.000 0.00 0.00 0.00 4.44
2461 2575 8.946085 CAGGTGTATTGTAGCTAAAGATGAAAA 58.054 33.333 0.00 0.00 0.00 2.29
2466 2580 9.113838 CAATTCAGGTGTATTGTAGCTAAAGAT 57.886 33.333 0.00 0.00 31.05 2.40
2503 2617 9.896645 CCCTATGACATGACATTTTAGCTATAT 57.103 33.333 15.66 0.00 0.00 0.86
3044 3161 6.199154 CAGTATTCTGTTACGGCTGTATCAAG 59.801 42.308 15.55 9.74 36.97 3.02
3467 3586 5.841957 AATAGCATTTTTACCCTGCAGAG 57.158 39.130 17.39 3.79 38.37 3.35
3812 3938 3.855255 TCAAACCTGATGTCCTTCACA 57.145 42.857 0.00 0.00 40.18 3.58
3906 4032 3.255725 GTGCATTCAACCATCACCATTG 58.744 45.455 0.00 0.00 0.00 2.82
3990 4116 5.670792 ATCATAGTTAACGACAACCCTGA 57.329 39.130 0.00 0.00 0.00 3.86
4000 4126 5.151632 CCGTTGGGAAATCATAGTTAACG 57.848 43.478 0.00 0.00 39.26 3.18
4150 4276 3.132111 ACTCTGGCGAAACATTTTGGTTT 59.868 39.130 0.00 0.00 43.30 3.27
4413 4539 0.991146 TGGTATGGAAGCTTGGAGCA 59.009 50.000 2.10 0.00 45.56 4.26
4442 4568 9.765795 GAAAAGGAATTAGAGAATAGGAATCGA 57.234 33.333 0.00 0.00 0.00 3.59
4617 4743 2.579873 GCCACTGTTATGCCAGATGAT 58.420 47.619 0.00 0.00 36.30 2.45
4661 4787 7.792364 TTTAGGGATACAGTACCTATCATGG 57.208 40.000 9.36 0.00 43.22 3.66
4784 4913 7.928908 TCTGTTTGTTTCATAAATGTGAAGC 57.071 32.000 0.89 0.89 39.13 3.86
4815 4944 4.614555 TTGGTAGCTAACAATGCAATCG 57.385 40.909 20.33 0.00 0.00 3.34
4856 4985 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
4857 4986 3.581332 ACAAGTAATTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4858 4987 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4859 4988 4.822026 AGACAAGTAATTCCGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
4860 4989 4.559251 CGAGACAAGTAATTCCGAACAGAG 59.441 45.833 0.00 0.00 0.00 3.35
4861 4990 4.482386 CGAGACAAGTAATTCCGAACAGA 58.518 43.478 0.00 0.00 0.00 3.41
4862 4991 3.612860 CCGAGACAAGTAATTCCGAACAG 59.387 47.826 0.00 0.00 0.00 3.16
4863 4992 3.256383 TCCGAGACAAGTAATTCCGAACA 59.744 43.478 0.00 0.00 0.00 3.18
4864 4993 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4865 4994 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4866 4995 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4867 4996 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4868 4997 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4869 4998 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4870 4999 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4871 5000 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4872 5001 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4873 5002 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4874 5003 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4875 5004 6.683974 AAATACATCCATTTCCGAGACAAG 57.316 37.500 0.00 0.00 0.00 3.16
4876 5005 7.561251 TCTAAATACATCCATTTCCGAGACAA 58.439 34.615 0.00 0.00 30.84 3.18
4877 5006 7.119709 TCTAAATACATCCATTTCCGAGACA 57.880 36.000 0.00 0.00 30.84 3.41
4878 5007 7.711339 AGTTCTAAATACATCCATTTCCGAGAC 59.289 37.037 0.00 0.00 30.84 3.36
4879 5008 7.792032 AGTTCTAAATACATCCATTTCCGAGA 58.208 34.615 0.00 0.00 30.84 4.04
4880 5009 9.542462 TTAGTTCTAAATACATCCATTTCCGAG 57.458 33.333 0.00 0.00 30.84 4.63
4881 5010 9.893634 TTTAGTTCTAAATACATCCATTTCCGA 57.106 29.630 1.47 0.00 30.84 4.55
4907 5036 9.664332 GCAGAAATGGATGTATCTAGACATATT 57.336 33.333 0.00 0.00 40.18 1.28
4908 5037 7.978414 CGCAGAAATGGATGTATCTAGACATAT 59.022 37.037 0.00 0.00 40.18 1.78
4909 5038 7.176690 TCGCAGAAATGGATGTATCTAGACATA 59.823 37.037 0.00 0.00 40.18 2.29
4910 5039 6.015095 TCGCAGAAATGGATGTATCTAGACAT 60.015 38.462 0.00 0.00 42.82 3.06
4911 5040 5.301805 TCGCAGAAATGGATGTATCTAGACA 59.698 40.000 0.00 0.00 0.00 3.41
4912 5041 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
4913 5042 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
4914 5043 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
4915 5044 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
4916 5045 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
4917 5046 5.679734 ATTGTCGCAGAAATGGATGTATC 57.320 39.130 0.00 0.00 39.69 2.24
4918 5047 7.566760 TTAATTGTCGCAGAAATGGATGTAT 57.433 32.000 0.00 0.00 39.69 2.29
4919 5048 6.993786 TTAATTGTCGCAGAAATGGATGTA 57.006 33.333 0.00 0.00 39.69 2.29
4920 5049 5.895636 TTAATTGTCGCAGAAATGGATGT 57.104 34.783 0.00 0.00 39.69 3.06
4921 5050 7.305590 CGAAATTAATTGTCGCAGAAATGGATG 60.306 37.037 15.03 0.00 39.69 3.51
4922 5051 6.692681 CGAAATTAATTGTCGCAGAAATGGAT 59.307 34.615 15.03 0.00 39.69 3.41
4923 5052 6.027131 CGAAATTAATTGTCGCAGAAATGGA 58.973 36.000 15.03 0.00 39.69 3.41
4924 5053 6.027131 TCGAAATTAATTGTCGCAGAAATGG 58.973 36.000 19.25 0.00 39.69 3.16
4925 5054 7.491254 TTCGAAATTAATTGTCGCAGAAATG 57.509 32.000 19.25 0.00 39.69 2.32
4926 5055 7.220683 CCATTCGAAATTAATTGTCGCAGAAAT 59.779 33.333 19.25 13.91 39.69 2.17
4927 5056 6.526325 CCATTCGAAATTAATTGTCGCAGAAA 59.474 34.615 19.25 12.85 39.69 2.52
4928 5057 6.027131 CCATTCGAAATTAATTGTCGCAGAA 58.973 36.000 19.25 13.07 39.69 3.02
4929 5058 5.352846 TCCATTCGAAATTAATTGTCGCAGA 59.647 36.000 19.25 13.22 34.80 4.26
4930 5059 5.568482 TCCATTCGAAATTAATTGTCGCAG 58.432 37.500 19.25 13.83 34.80 5.18
4931 5060 5.448496 CCTCCATTCGAAATTAATTGTCGCA 60.448 40.000 19.25 13.54 34.80 5.10
4932 5061 4.970003 CCTCCATTCGAAATTAATTGTCGC 59.030 41.667 19.25 4.96 34.80 5.19
4933 5062 5.295787 TCCCTCCATTCGAAATTAATTGTCG 59.704 40.000 18.54 18.54 36.12 4.35
4934 5063 6.318900 ACTCCCTCCATTCGAAATTAATTGTC 59.681 38.462 0.00 1.54 0.00 3.18
4935 5064 6.187682 ACTCCCTCCATTCGAAATTAATTGT 58.812 36.000 0.00 0.00 0.00 2.71
4936 5065 6.699575 ACTCCCTCCATTCGAAATTAATTG 57.300 37.500 0.00 0.00 0.00 2.32
4937 5066 7.998964 ACATACTCCCTCCATTCGAAATTAATT 59.001 33.333 0.00 0.00 0.00 1.40
4938 5067 7.445402 CACATACTCCCTCCATTCGAAATTAAT 59.555 37.037 0.00 0.00 0.00 1.40
4939 5068 6.765989 CACATACTCCCTCCATTCGAAATTAA 59.234 38.462 0.00 0.00 0.00 1.40
4940 5069 6.288294 CACATACTCCCTCCATTCGAAATTA 58.712 40.000 0.00 0.00 0.00 1.40
4941 5070 5.126067 CACATACTCCCTCCATTCGAAATT 58.874 41.667 0.00 0.00 0.00 1.82
4942 5071 4.444876 CCACATACTCCCTCCATTCGAAAT 60.445 45.833 0.00 0.00 0.00 2.17
4943 5072 3.118408 CCACATACTCCCTCCATTCGAAA 60.118 47.826 0.00 0.00 0.00 3.46
4944 5073 2.434336 CCACATACTCCCTCCATTCGAA 59.566 50.000 0.00 0.00 0.00 3.71
4945 5074 2.039418 CCACATACTCCCTCCATTCGA 58.961 52.381 0.00 0.00 0.00 3.71
4946 5075 1.541233 GCCACATACTCCCTCCATTCG 60.541 57.143 0.00 0.00 0.00 3.34
4947 5076 1.541233 CGCCACATACTCCCTCCATTC 60.541 57.143 0.00 0.00 0.00 2.67
4948 5077 0.469917 CGCCACATACTCCCTCCATT 59.530 55.000 0.00 0.00 0.00 3.16
4949 5078 0.398522 TCGCCACATACTCCCTCCAT 60.399 55.000 0.00 0.00 0.00 3.41
4950 5079 0.398522 ATCGCCACATACTCCCTCCA 60.399 55.000 0.00 0.00 0.00 3.86
4951 5080 0.759346 AATCGCCACATACTCCCTCC 59.241 55.000 0.00 0.00 0.00 4.30
4952 5081 1.541233 CCAATCGCCACATACTCCCTC 60.541 57.143 0.00 0.00 0.00 4.30
4953 5082 0.469917 CCAATCGCCACATACTCCCT 59.530 55.000 0.00 0.00 0.00 4.20
4954 5083 0.468226 TCCAATCGCCACATACTCCC 59.532 55.000 0.00 0.00 0.00 4.30
4955 5084 2.146342 CATCCAATCGCCACATACTCC 58.854 52.381 0.00 0.00 0.00 3.85
4956 5085 2.146342 CCATCCAATCGCCACATACTC 58.854 52.381 0.00 0.00 0.00 2.59
4957 5086 1.768275 TCCATCCAATCGCCACATACT 59.232 47.619 0.00 0.00 0.00 2.12
4958 5087 2.254546 TCCATCCAATCGCCACATAC 57.745 50.000 0.00 0.00 0.00 2.39
4959 5088 3.148412 CAATCCATCCAATCGCCACATA 58.852 45.455 0.00 0.00 0.00 2.29
4960 5089 1.958579 CAATCCATCCAATCGCCACAT 59.041 47.619 0.00 0.00 0.00 3.21
5035 5164 2.187100 TGGTGACATGTGCCTCTATCA 58.813 47.619 1.15 0.00 33.40 2.15
5110 5239 9.739276 ACCAATACAATCAGACATTTTCTTCTA 57.261 29.630 0.00 0.00 28.96 2.10
5202 5331 2.775890 AGTTGTCAGCAGGATGAAGTG 58.224 47.619 0.00 0.00 39.69 3.16
5233 5391 3.807622 CACACCCGCGATAAACTTGATAT 59.192 43.478 8.23 0.00 0.00 1.63
5234 5392 3.119065 TCACACCCGCGATAAACTTGATA 60.119 43.478 8.23 0.00 0.00 2.15
5235 5393 2.006888 CACACCCGCGATAAACTTGAT 58.993 47.619 8.23 0.00 0.00 2.57
5237 5395 1.434555 TCACACCCGCGATAAACTTG 58.565 50.000 8.23 0.00 0.00 3.16
5238 5396 2.006888 CATCACACCCGCGATAAACTT 58.993 47.619 8.23 0.00 0.00 2.66
5239 5397 1.066430 ACATCACACCCGCGATAAACT 60.066 47.619 8.23 0.00 0.00 2.66
5240 5398 1.365699 ACATCACACCCGCGATAAAC 58.634 50.000 8.23 0.00 0.00 2.01
5248 5419 4.119862 CCTTTGTAGATACATCACACCCG 58.880 47.826 0.00 0.00 35.89 5.28
5410 5581 3.576982 ACTCCATCTACTCCGTTGTTTCA 59.423 43.478 0.00 0.00 0.00 2.69
5548 5720 0.663568 CGTATAAAGCGCCTCCGAGG 60.664 60.000 10.41 10.41 38.80 4.63
5806 5980 3.258123 GCCCCTTATGCTTTGAGAAAACA 59.742 43.478 0.00 0.00 0.00 2.83
5862 6037 3.940852 CCAAATTAAGGGCTGCCAAAATC 59.059 43.478 22.05 1.96 0.00 2.17
5976 6167 4.805609 GCCAACCAAATGGAAGCCAAAATA 60.806 41.667 6.42 0.00 43.54 1.40
6008 6199 3.303351 AGATCCCATAGGCAACCAAAG 57.697 47.619 0.00 0.00 37.17 2.77
6049 6241 2.029649 ACATTGCTTGACCATCTGTTGC 60.030 45.455 0.00 0.00 0.00 4.17
6132 6324 9.899226 CCACTTAAAAAGATAACCTTTGAGAAG 57.101 33.333 0.00 0.00 43.90 2.85
6141 6333 6.987404 TGCAAAACCCACTTAAAAAGATAACC 59.013 34.615 0.00 0.00 0.00 2.85
6142 6334 7.042321 GGTGCAAAACCCACTTAAAAAGATAAC 60.042 37.037 0.00 0.00 44.02 1.89
6173 6365 0.622136 TGCCATGAGAATGCCACTCT 59.378 50.000 0.00 0.00 35.66 3.24
6180 6374 2.572290 TGCTCTGATGCCATGAGAATG 58.428 47.619 0.00 0.00 0.00 2.67
6195 6389 2.747989 CTGACAACATGCAAGATGCTCT 59.252 45.455 0.00 0.00 45.31 4.09
6202 6396 4.022589 ACAAATCTCCTGACAACATGCAAG 60.023 41.667 0.00 0.00 0.00 4.01
6209 6635 8.044060 TGAATAATCACAAATCTCCTGACAAC 57.956 34.615 0.00 0.00 0.00 3.32
6284 6710 1.090728 GCCTACAGCAGCTTCTTTCC 58.909 55.000 0.00 0.00 42.97 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.