Multiple sequence alignment - TraesCS3A01G130000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G130000 chr3A 100.000 5280 0 0 1 5280 107075657 107080936 0.000000e+00 9751
1 TraesCS3A01G130000 chr3D 94.244 3266 111 29 1411 4655 90825742 90828951 0.000000e+00 4918
2 TraesCS3A01G130000 chr3D 86.209 1385 92 51 48 1391 90824200 90825526 0.000000e+00 1408
3 TraesCS3A01G130000 chr3D 93.939 264 16 0 4657 4920 109257940 109257677 2.960000e-107 399
4 TraesCS3A01G130000 chr3D 91.765 255 21 0 4942 5196 563449183 563448929 6.500000e-94 355
5 TraesCS3A01G130000 chr3B 97.127 1984 57 0 1411 3394 140487709 140489692 0.000000e+00 3349
6 TraesCS3A01G130000 chr3B 88.125 1381 78 43 77 1409 140486246 140487588 0.000000e+00 1563
7 TraesCS3A01G130000 chr3B 94.377 907 32 6 3761 4655 140489957 140490856 0.000000e+00 1375
8 TraesCS3A01G130000 chr6B 83.438 797 60 24 641 1409 53342352 53343104 0.000000e+00 675
9 TraesCS3A01G130000 chr6B 91.892 259 21 0 4942 5200 347227395 347227137 3.890000e-96 363
10 TraesCS3A01G130000 chr6A 83.312 797 63 27 641 1409 243299720 243300474 0.000000e+00 671
11 TraesCS3A01G130000 chr7B 83.270 795 61 23 643 1409 420659007 420659757 0.000000e+00 665
12 TraesCS3A01G130000 chr7B 82.936 797 63 21 641 1409 420612824 420613575 0.000000e+00 651
13 TraesCS3A01G130000 chr7B 85.256 468 26 15 933 1387 124646743 124647180 4.850000e-120 442
14 TraesCS3A01G130000 chr7B 83.258 442 30 13 933 1361 728790028 728789618 3.000000e-97 366
15 TraesCS3A01G130000 chr2A 82.331 798 58 30 641 1409 33779369 33778626 2.700000e-172 616
16 TraesCS3A01G130000 chr1A 80.629 795 50 37 641 1409 14978113 14978829 2.180000e-143 520
17 TraesCS3A01G130000 chr4B 85.306 490 25 16 933 1409 187543642 187543187 3.730000e-126 462
18 TraesCS3A01G130000 chr4B 91.440 257 22 0 4942 5198 413123635 413123379 2.340000e-93 353
19 TraesCS3A01G130000 chr5B 85.065 462 29 14 961 1409 593374628 593375062 8.120000e-118 435
20 TraesCS3A01G130000 chr5B 94.318 264 15 0 4657 4920 374453949 374453686 6.370000e-109 405
21 TraesCS3A01G130000 chr5B 93.511 262 15 2 4657 4917 432418424 432418684 6.410000e-104 388
22 TraesCS3A01G130000 chr5B 92.771 249 17 1 4934 5181 656245376 656245624 5.030000e-95 359
23 TraesCS3A01G130000 chr5B 90.262 267 22 3 4934 5198 198382046 198381782 3.910000e-91 346
24 TraesCS3A01G130000 chr6D 93.680 269 17 0 4654 4922 112782167 112781899 2.290000e-108 403
25 TraesCS3A01G130000 chr2D 93.680 269 17 0 4655 4923 46214350 46214082 2.290000e-108 403
26 TraesCS3A01G130000 chr2D 92.520 254 19 0 4942 5195 541547289 541547542 1.080000e-96 364
27 TraesCS3A01G130000 chr7A 93.358 271 18 0 4653 4923 125710270 125710540 8.240000e-108 401
28 TraesCS3A01G130000 chr7D 92.937 269 19 0 4655 4923 133333224 133332956 4.960000e-105 392
29 TraesCS3A01G130000 chr7D 92.800 250 18 0 4932 5181 110773068 110772819 3.890000e-96 363
30 TraesCS3A01G130000 chr7D 91.120 259 23 0 4940 5198 369463530 369463272 8.410000e-93 351
31 TraesCS3A01G130000 chr4A 92.910 268 19 0 4655 4922 200056288 200056021 1.780000e-104 390
32 TraesCS3A01G130000 chr2B 92.593 270 20 0 4655 4924 143944127 143943858 6.410000e-104 388
33 TraesCS3A01G130000 chr1D 91.797 256 20 1 4942 5197 200346112 200346366 6.500000e-94 355


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G130000 chr3A 107075657 107080936 5279 False 9751.000000 9751 100.000000 1 5280 1 chr3A.!!$F1 5279
1 TraesCS3A01G130000 chr3D 90824200 90828951 4751 False 3163.000000 4918 90.226500 48 4655 2 chr3D.!!$F1 4607
2 TraesCS3A01G130000 chr3B 140486246 140490856 4610 False 2095.666667 3349 93.209667 77 4655 3 chr3B.!!$F1 4578
3 TraesCS3A01G130000 chr6B 53342352 53343104 752 False 675.000000 675 83.438000 641 1409 1 chr6B.!!$F1 768
4 TraesCS3A01G130000 chr6A 243299720 243300474 754 False 671.000000 671 83.312000 641 1409 1 chr6A.!!$F1 768
5 TraesCS3A01G130000 chr7B 420659007 420659757 750 False 665.000000 665 83.270000 643 1409 1 chr7B.!!$F3 766
6 TraesCS3A01G130000 chr7B 420612824 420613575 751 False 651.000000 651 82.936000 641 1409 1 chr7B.!!$F2 768
7 TraesCS3A01G130000 chr2A 33778626 33779369 743 True 616.000000 616 82.331000 641 1409 1 chr2A.!!$R1 768
8 TraesCS3A01G130000 chr1A 14978113 14978829 716 False 520.000000 520 80.629000 641 1409 1 chr1A.!!$F1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 682 0.185416 TCCGACCACCCTATCTCTCC 59.815 60.000 0.00 0.00 0.00 3.71 F
1279 1367 0.250513 GGGAGCCGAACATGAAGAGT 59.749 55.000 0.00 0.00 0.00 3.24 F
1726 2025 0.563173 TGGAAGGGGAGGAGATCGAT 59.437 55.000 0.00 0.00 0.00 3.59 F
1960 2259 1.425428 CAAGATTCCGCTTGCGGAC 59.575 57.895 32.49 22.79 38.85 4.79 F
3468 3767 1.467883 GCATGTTGAAGCAGCGCATTA 60.468 47.619 11.47 0.00 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1776 0.394488 TTCCTTTGCCAACACCGACA 60.394 50.000 0.00 0.0 0.00 4.35 R
2884 3183 0.693049 AGATGAAGTCCTTTGCCCGT 59.307 50.000 0.00 0.0 0.00 5.28 R
3022 3321 1.394917 CGTTCTCCGGCTTCAATCTTG 59.605 52.381 0.00 0.0 0.00 3.02 R
3497 3796 1.970092 TTTCCCAATGAACGAACCGT 58.030 45.000 0.00 0.0 43.97 4.83 R
4869 5191 0.249676 TAACATAGCGCACCCCGAAA 59.750 50.000 11.47 0.0 40.02 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.711399 CATCATAGATGCCTGAAAGTGGA 58.289 43.478 0.00 0.00 0.00 4.02
23 24 5.314529 CATCATAGATGCCTGAAAGTGGAT 58.685 41.667 0.00 0.00 0.00 3.41
24 25 4.711399 TCATAGATGCCTGAAAGTGGATG 58.289 43.478 0.00 0.00 0.00 3.51
25 26 4.409901 TCATAGATGCCTGAAAGTGGATGA 59.590 41.667 0.00 0.00 0.00 2.92
26 27 3.278668 AGATGCCTGAAAGTGGATGAG 57.721 47.619 0.00 0.00 0.00 2.90
27 28 2.842496 AGATGCCTGAAAGTGGATGAGA 59.158 45.455 0.00 0.00 0.00 3.27
28 29 3.265221 AGATGCCTGAAAGTGGATGAGAA 59.735 43.478 0.00 0.00 0.00 2.87
29 30 2.783135 TGCCTGAAAGTGGATGAGAAC 58.217 47.619 0.00 0.00 0.00 3.01
30 31 2.373169 TGCCTGAAAGTGGATGAGAACT 59.627 45.455 0.00 0.00 0.00 3.01
31 32 3.181440 TGCCTGAAAGTGGATGAGAACTT 60.181 43.478 0.00 0.00 38.25 2.66
32 33 3.190118 GCCTGAAAGTGGATGAGAACTTG 59.810 47.826 0.00 0.00 36.75 3.16
33 34 4.392940 CCTGAAAGTGGATGAGAACTTGT 58.607 43.478 0.00 0.00 36.75 3.16
34 35 4.453819 CCTGAAAGTGGATGAGAACTTGTC 59.546 45.833 0.00 0.00 36.75 3.18
35 36 4.389374 TGAAAGTGGATGAGAACTTGTCC 58.611 43.478 0.00 0.00 36.75 4.02
36 37 4.103153 TGAAAGTGGATGAGAACTTGTCCT 59.897 41.667 0.00 0.00 36.75 3.85
37 38 4.713792 AAGTGGATGAGAACTTGTCCTT 57.286 40.909 0.00 0.00 35.34 3.36
38 39 4.713792 AGTGGATGAGAACTTGTCCTTT 57.286 40.909 0.00 0.00 0.00 3.11
39 40 4.646572 AGTGGATGAGAACTTGTCCTTTC 58.353 43.478 0.00 0.00 0.00 2.62
40 41 4.103153 AGTGGATGAGAACTTGTCCTTTCA 59.897 41.667 0.00 0.00 0.00 2.69
41 42 5.006386 GTGGATGAGAACTTGTCCTTTCAT 58.994 41.667 0.00 0.00 0.00 2.57
42 43 5.474876 GTGGATGAGAACTTGTCCTTTCATT 59.525 40.000 0.00 0.00 0.00 2.57
43 44 5.474532 TGGATGAGAACTTGTCCTTTCATTG 59.525 40.000 0.00 0.00 0.00 2.82
44 45 5.707298 GGATGAGAACTTGTCCTTTCATTGA 59.293 40.000 0.00 0.00 0.00 2.57
45 46 6.348868 GGATGAGAACTTGTCCTTTCATTGAC 60.349 42.308 0.00 0.00 0.00 3.18
46 47 4.511454 TGAGAACTTGTCCTTTCATTGACG 59.489 41.667 0.00 0.00 34.18 4.35
47 48 4.703897 AGAACTTGTCCTTTCATTGACGA 58.296 39.130 0.00 0.00 34.18 4.20
48 49 5.308825 AGAACTTGTCCTTTCATTGACGAT 58.691 37.500 0.00 0.00 34.18 3.73
49 50 5.180117 AGAACTTGTCCTTTCATTGACGATG 59.820 40.000 0.00 0.00 37.08 3.84
50 51 4.641396 ACTTGTCCTTTCATTGACGATGA 58.359 39.130 0.84 0.84 42.95 2.92
66 67 9.612620 ATTGACGATGAAAAAGACTGAAATAAC 57.387 29.630 0.00 0.00 0.00 1.89
102 104 9.533831 AAAAATACAAGATCCATACTTGAACCT 57.466 29.630 13.34 0.00 44.92 3.50
212 214 4.028490 GGACGTGGTGGCCATGGA 62.028 66.667 18.40 0.00 44.23 3.41
213 215 2.746277 GACGTGGTGGCCATGGAC 60.746 66.667 18.40 15.32 44.23 4.02
214 216 4.344865 ACGTGGTGGCCATGGACC 62.345 66.667 17.19 15.59 44.23 4.46
216 218 3.978193 GTGGTGGCCATGGACCCA 61.978 66.667 20.58 20.58 35.28 4.51
228 230 0.609662 TGGACCCACGGTTAACTAGC 59.390 55.000 5.42 0.00 35.25 3.42
303 306 8.606754 TCCCATTCTTAATTGATTGATTTCCA 57.393 30.769 0.00 0.00 0.00 3.53
397 400 3.524606 GCGTGCGCCCCTCTAGTA 61.525 66.667 4.18 0.00 34.56 1.82
398 401 2.722487 CGTGCGCCCCTCTAGTAG 59.278 66.667 4.18 0.00 0.00 2.57
399 402 2.119655 CGTGCGCCCCTCTAGTAGT 61.120 63.158 4.18 0.00 0.00 2.73
405 408 2.425539 CGCCCCTCTAGTAGTACTAGC 58.574 57.143 26.35 16.97 45.93 3.42
406 409 2.224475 CGCCCCTCTAGTAGTACTAGCA 60.224 54.545 26.35 16.59 45.93 3.49
407 410 3.414269 GCCCCTCTAGTAGTACTAGCAG 58.586 54.545 26.35 22.44 45.93 4.24
410 413 4.594062 CCCCTCTAGTAGTACTAGCAGAGA 59.406 50.000 27.48 14.00 45.93 3.10
467 489 3.800163 CGTCGCTCTTTTCTTTCTTTCC 58.200 45.455 0.00 0.00 0.00 3.13
468 490 3.661936 CGTCGCTCTTTTCTTTCTTTCCG 60.662 47.826 0.00 0.00 0.00 4.30
480 502 1.619654 TCTTTCCGTCCCACGTCTAA 58.380 50.000 0.00 0.00 40.58 2.10
505 536 7.425224 AACTCTACAGCTCCAGTTGTATATT 57.575 36.000 4.00 0.00 40.16 1.28
516 547 4.312443 CAGTTGTATATTACCGCCCGATT 58.688 43.478 0.00 0.00 0.00 3.34
580 630 2.435059 GTCCTCTTCACCAGCGGC 60.435 66.667 0.00 0.00 0.00 6.53
581 631 2.922503 TCCTCTTCACCAGCGGCA 60.923 61.111 1.45 0.00 0.00 5.69
608 658 1.116308 GTGGTAAGCCTCTCTCTCCC 58.884 60.000 0.00 0.00 35.27 4.30
618 668 1.000771 CTCTCTCCCACTCCGACCA 60.001 63.158 0.00 0.00 0.00 4.02
623 675 2.038329 CCCACTCCGACCACCCTA 59.962 66.667 0.00 0.00 0.00 3.53
625 677 1.400530 CCCACTCCGACCACCCTATC 61.401 65.000 0.00 0.00 0.00 2.08
630 682 0.185416 TCCGACCACCCTATCTCTCC 59.815 60.000 0.00 0.00 0.00 3.71
634 686 2.158505 CGACCACCCTATCTCTCCCTTA 60.159 54.545 0.00 0.00 0.00 2.69
636 688 2.090663 ACCACCCTATCTCTCCCTTACC 60.091 54.545 0.00 0.00 0.00 2.85
761 826 0.581529 TGCGTTTCTGCTTCTGTTCG 59.418 50.000 0.00 0.00 35.36 3.95
912 985 1.675641 CGCTTTCCTGGTTCCCCTG 60.676 63.158 0.00 0.00 0.00 4.45
913 986 1.979155 GCTTTCCTGGTTCCCCTGC 60.979 63.158 0.00 0.00 0.00 4.85
915 988 0.322906 CTTTCCTGGTTCCCCTGCTC 60.323 60.000 0.00 0.00 0.00 4.26
923 996 1.381327 TTCCCCTGCTCTCGGTAGG 60.381 63.158 0.00 0.00 45.68 3.18
955 1028 2.908940 GCTTGTGTGCAGGCAGGT 60.909 61.111 0.00 0.00 45.60 4.00
1053 1129 1.144936 CACCATCTTCGAGGCCTCC 59.855 63.158 27.20 9.59 0.00 4.30
1124 1200 5.306532 CGCAAGGTACTCTACTTCTACAA 57.693 43.478 0.00 0.00 38.49 2.41
1125 1201 5.333513 CGCAAGGTACTCTACTTCTACAAG 58.666 45.833 0.00 0.00 38.49 3.16
1126 1202 5.652518 GCAAGGTACTCTACTTCTACAAGG 58.347 45.833 0.00 0.00 38.49 3.61
1127 1203 5.652518 CAAGGTACTCTACTTCTACAAGGC 58.347 45.833 0.00 0.00 38.49 4.35
1128 1204 4.279982 AGGTACTCTACTTCTACAAGGCC 58.720 47.826 0.00 0.00 33.37 5.19
1161 1240 4.080356 ACGGATCATTTCTGATTTCTCCCA 60.080 41.667 0.00 0.00 42.27 4.37
1165 1244 6.207025 GGATCATTTCTGATTTCTCCCATCAG 59.793 42.308 3.88 3.88 46.32 2.90
1273 1361 3.080647 GGTTAGGGAGCCGAACATG 57.919 57.895 0.00 0.00 40.15 3.21
1274 1362 0.539986 GGTTAGGGAGCCGAACATGA 59.460 55.000 0.00 0.00 40.15 3.07
1275 1363 1.065709 GGTTAGGGAGCCGAACATGAA 60.066 52.381 0.00 0.00 40.15 2.57
1276 1364 2.280628 GTTAGGGAGCCGAACATGAAG 58.719 52.381 0.00 0.00 38.64 3.02
1277 1365 1.860641 TAGGGAGCCGAACATGAAGA 58.139 50.000 0.00 0.00 0.00 2.87
1278 1366 0.539051 AGGGAGCCGAACATGAAGAG 59.461 55.000 0.00 0.00 0.00 2.85
1279 1367 0.250513 GGGAGCCGAACATGAAGAGT 59.749 55.000 0.00 0.00 0.00 3.24
1280 1368 1.339151 GGGAGCCGAACATGAAGAGTT 60.339 52.381 0.00 0.00 0.00 3.01
1465 1764 3.402628 TCTTGACAGTTTGTAGAGGGC 57.597 47.619 0.00 0.00 0.00 5.19
1726 2025 0.563173 TGGAAGGGGAGGAGATCGAT 59.437 55.000 0.00 0.00 0.00 3.59
1810 2109 2.096218 GCTTCAGTACTTTGGCGTTGAG 60.096 50.000 0.00 0.00 0.00 3.02
1960 2259 1.425428 CAAGATTCCGCTTGCGGAC 59.575 57.895 32.49 22.79 38.85 4.79
2107 2406 1.685820 CCCCAAACCTGGAGGAGAC 59.314 63.158 0.00 0.00 46.92 3.36
2260 2559 2.298729 TGCAAATTACTTCCAAGGCACC 59.701 45.455 0.00 0.00 0.00 5.01
2524 2823 2.038557 TGACTTCCACCAGCCTAACTTC 59.961 50.000 0.00 0.00 0.00 3.01
2581 2880 4.412843 AGCCATGGCATGATATTCATTCA 58.587 39.130 37.18 0.00 44.88 2.57
2585 2884 5.388111 CATGGCATGATATTCATTCACGAC 58.612 41.667 22.91 0.00 34.28 4.34
2623 2922 5.306678 TGCCTGGGATGTTCTTTACAATTTT 59.693 36.000 0.00 0.00 40.89 1.82
3022 3321 3.058639 AGCTTTCGTTGAAGATTGTCAGC 60.059 43.478 0.00 0.00 0.00 4.26
3094 3393 2.203181 GAGGGCATGCCAGAGAGC 60.203 66.667 36.56 18.94 37.98 4.09
3181 3480 2.124942 GCTCTCGAGGCAAAGGGG 60.125 66.667 13.56 0.00 0.00 4.79
3366 3665 3.912248 TGATAGGTACTCCCTCAGTTCC 58.088 50.000 0.00 0.00 44.81 3.62
3396 3695 5.719085 ACCTGTGGGTTGCATTATATTTCAA 59.281 36.000 0.00 0.00 44.73 2.69
3402 3701 9.979578 GTGGGTTGCATTATATTTCAATATCAA 57.020 29.630 0.00 0.00 33.78 2.57
3423 3722 6.289834 TCAAGGTTTTGAATGAATTGCATGT 58.710 32.000 0.00 0.00 40.26 3.21
3430 3729 9.505995 GTTTTGAATGAATTGCATGTTCTTTTT 57.494 25.926 12.02 5.29 37.28 1.94
3468 3767 1.467883 GCATGTTGAAGCAGCGCATTA 60.468 47.619 11.47 0.00 0.00 1.90
3483 3782 5.341462 CAGCGCATTATCTAATGTTTGCATC 59.659 40.000 11.47 0.00 43.72 3.91
3497 3796 5.008980 TGTTTGCATCTGTTCATCCATACA 58.991 37.500 0.00 0.00 0.00 2.29
3498 3797 5.106197 TGTTTGCATCTGTTCATCCATACAC 60.106 40.000 0.00 0.00 0.00 2.90
3499 3798 3.197265 TGCATCTGTTCATCCATACACG 58.803 45.455 0.00 0.00 0.00 4.49
3500 3799 2.545526 GCATCTGTTCATCCATACACGG 59.454 50.000 0.00 0.00 0.00 4.94
3501 3800 3.797039 CATCTGTTCATCCATACACGGT 58.203 45.455 0.00 0.00 0.00 4.83
3509 3811 3.118920 TCATCCATACACGGTTCGTTCAT 60.119 43.478 0.00 0.00 38.32 2.57
3520 3822 3.499157 CGGTTCGTTCATTGGGAAAACTA 59.501 43.478 0.00 0.00 37.23 2.24
3523 3825 6.128227 CGGTTCGTTCATTGGGAAAACTAATA 60.128 38.462 0.00 0.00 37.23 0.98
3550 3852 6.396829 ACTCAAATTCAGTTTCCTTCCTTG 57.603 37.500 0.00 0.00 0.00 3.61
3557 3859 7.846101 ATTCAGTTTCCTTCCTTGAAAGATT 57.154 32.000 0.00 0.00 32.70 2.40
3568 3874 7.611855 CCTTCCTTGAAAGATTAGAGGCTTAAA 59.388 37.037 0.00 0.00 0.00 1.52
3625 3931 9.461312 AAAATGTACTTGTCATATGCTTCCTAA 57.539 29.630 0.00 0.00 0.00 2.69
3626 3932 8.438676 AATGTACTTGTCATATGCTTCCTAAC 57.561 34.615 0.00 0.00 0.00 2.34
3630 3938 5.877012 ACTTGTCATATGCTTCCTAACACTG 59.123 40.000 0.00 0.00 0.00 3.66
3637 3945 8.264347 TCATATGCTTCCTAACACTGTATTTCA 58.736 33.333 0.00 0.00 0.00 2.69
3638 3946 9.060347 CATATGCTTCCTAACACTGTATTTCAT 57.940 33.333 0.00 0.00 0.00 2.57
3639 3947 7.944729 ATGCTTCCTAACACTGTATTTCATT 57.055 32.000 0.00 0.00 0.00 2.57
3640 3948 7.759489 TGCTTCCTAACACTGTATTTCATTT 57.241 32.000 0.00 0.00 0.00 2.32
3641 3949 8.177119 TGCTTCCTAACACTGTATTTCATTTT 57.823 30.769 0.00 0.00 0.00 1.82
3642 3950 8.637986 TGCTTCCTAACACTGTATTTCATTTTT 58.362 29.630 0.00 0.00 0.00 1.94
3705 4013 8.627208 TCTTGCTCTTGATTTGTCTCTTAAAT 57.373 30.769 0.00 0.00 0.00 1.40
3709 4017 8.509690 TGCTCTTGATTTGTCTCTTAAATTCAG 58.490 33.333 0.00 0.00 0.00 3.02
3710 4018 8.510505 GCTCTTGATTTGTCTCTTAAATTCAGT 58.489 33.333 0.00 0.00 0.00 3.41
3728 4038 7.772332 ATTCAGTCGAAATAAACTATCGCTT 57.228 32.000 0.00 0.00 36.56 4.68
3734 4044 7.222224 AGTCGAAATAAACTATCGCTTGTTAGG 59.778 37.037 0.00 0.00 36.56 2.69
3751 4061 2.271944 AGGTACTCCTGTTGGCAAAC 57.728 50.000 0.00 0.00 43.33 2.93
3766 4076 3.387374 TGGCAAACCATTGAACAACTGAT 59.613 39.130 0.00 0.00 42.67 2.90
3794 4104 2.972021 TGTTCTCCTCTGTGTGGATTGA 59.028 45.455 0.00 0.00 32.56 2.57
3803 4113 3.588842 TCTGTGTGGATTGAAAGGATCCT 59.411 43.478 9.02 9.02 42.88 3.24
3810 4120 6.603201 TGTGGATTGAAAGGATCCTGTTATTC 59.397 38.462 17.02 15.52 42.88 1.75
3811 4121 6.830838 GTGGATTGAAAGGATCCTGTTATTCT 59.169 38.462 17.02 0.11 42.88 2.40
3812 4122 7.340487 GTGGATTGAAAGGATCCTGTTATTCTT 59.660 37.037 17.02 3.28 42.88 2.52
3813 4123 7.895429 TGGATTGAAAGGATCCTGTTATTCTTT 59.105 33.333 17.02 2.42 42.88 2.52
3814 4124 9.408648 GGATTGAAAGGATCCTGTTATTCTTTA 57.591 33.333 17.02 5.85 39.97 1.85
3890 4200 2.545742 GGGTCTGCAAACATCAACCAAC 60.546 50.000 0.00 0.00 0.00 3.77
4087 4397 0.108615 AGAAGGTGAACAGGATCGCG 60.109 55.000 0.00 0.00 0.00 5.87
4090 4400 1.519455 GGTGAACAGGATCGCGGAG 60.519 63.158 6.13 0.00 0.00 4.63
4288 4598 6.440010 CCATCCTCACCACATAGATAAGATCT 59.560 42.308 0.00 0.00 43.33 2.75
4313 4623 0.467844 TGCATTTCCTGTGTGTGGCT 60.468 50.000 0.00 0.00 0.00 4.75
4325 4635 1.340502 TGTGTGGCTTCAGTTTGGTGA 60.341 47.619 0.00 0.00 0.00 4.02
4368 4690 5.757850 AAATAGCAGGCTGTTATAGTTGC 57.242 39.130 21.89 2.93 38.54 4.17
4374 4696 1.134491 GGCTGTTATAGTTGCGGGACT 60.134 52.381 0.00 0.00 0.00 3.85
4464 4786 3.250040 ACACGGTTTCTGCTGTTTGTATC 59.750 43.478 0.00 0.00 0.00 2.24
4530 4852 7.713750 TCGTCATACCTACTTGGATCTTTAAG 58.286 38.462 0.00 0.00 39.71 1.85
4658 4980 9.778741 TCCACTGAATAATTAAGCTGTATTAGG 57.221 33.333 0.00 0.00 0.00 2.69
4659 4981 8.507249 CCACTGAATAATTAAGCTGTATTAGGC 58.493 37.037 0.00 0.00 0.00 3.93
4660 4982 9.277783 CACTGAATAATTAAGCTGTATTAGGCT 57.722 33.333 0.00 0.00 40.85 4.58
4661 4983 9.277783 ACTGAATAATTAAGCTGTATTAGGCTG 57.722 33.333 0.00 0.00 38.91 4.85
4662 4984 8.621532 TGAATAATTAAGCTGTATTAGGCTGG 57.378 34.615 0.00 0.00 38.91 4.85
4663 4985 8.217799 TGAATAATTAAGCTGTATTAGGCTGGT 58.782 33.333 0.00 0.00 38.91 4.00
4664 4986 8.622948 AATAATTAAGCTGTATTAGGCTGGTC 57.377 34.615 0.00 0.00 38.91 4.02
4665 4987 5.630415 ATTAAGCTGTATTAGGCTGGTCA 57.370 39.130 0.00 0.00 38.91 4.02
4666 4988 5.630415 TTAAGCTGTATTAGGCTGGTCAT 57.370 39.130 0.00 0.00 38.91 3.06
4667 4989 6.740944 TTAAGCTGTATTAGGCTGGTCATA 57.259 37.500 0.00 0.00 38.91 2.15
4668 4990 4.881019 AGCTGTATTAGGCTGGTCATAG 57.119 45.455 0.00 0.00 37.41 2.23
4669 4991 4.227197 AGCTGTATTAGGCTGGTCATAGT 58.773 43.478 0.00 0.00 37.41 2.12
4670 4992 4.039730 AGCTGTATTAGGCTGGTCATAGTG 59.960 45.833 0.00 0.00 37.41 2.74
4671 4993 4.800914 GCTGTATTAGGCTGGTCATAGTGG 60.801 50.000 0.00 0.00 0.00 4.00
4672 4994 3.646162 TGTATTAGGCTGGTCATAGTGGG 59.354 47.826 0.00 0.00 0.00 4.61
4673 4995 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
4674 4996 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
4675 4997 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
4676 4998 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
4677 4999 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
4678 5000 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
4679 5001 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
4680 5002 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
4681 5003 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
4682 5004 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
4683 5005 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
4684 5006 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
4685 5007 7.310634 TGGTCATAGTGGGGAGTAACTTATAT 58.689 38.462 0.00 0.00 0.00 0.86
4686 5008 7.792736 TGGTCATAGTGGGGAGTAACTTATATT 59.207 37.037 0.00 0.00 0.00 1.28
4687 5009 9.317827 GGTCATAGTGGGGAGTAACTTATATTA 57.682 37.037 0.00 0.00 0.00 0.98
4696 5018 9.819267 GGGGAGTAACTTATATTAGTATCATGC 57.181 37.037 0.00 0.00 0.00 4.06
4711 5033 7.773489 AGTATCATGCATATGTCACTAGTCT 57.227 36.000 0.00 0.00 35.73 3.24
4712 5034 8.870075 AGTATCATGCATATGTCACTAGTCTA 57.130 34.615 0.00 0.00 35.73 2.59
4713 5035 9.301897 AGTATCATGCATATGTCACTAGTCTAA 57.698 33.333 0.00 0.00 35.73 2.10
4714 5036 9.566530 GTATCATGCATATGTCACTAGTCTAAG 57.433 37.037 0.00 0.00 35.73 2.18
4715 5037 7.588497 TCATGCATATGTCACTAGTCTAAGT 57.412 36.000 0.00 0.00 35.73 2.24
4716 5038 8.011844 TCATGCATATGTCACTAGTCTAAGTT 57.988 34.615 0.00 0.00 35.73 2.66
4717 5039 9.131791 TCATGCATATGTCACTAGTCTAAGTTA 57.868 33.333 0.00 0.00 35.73 2.24
4718 5040 9.186323 CATGCATATGTCACTAGTCTAAGTTAC 57.814 37.037 0.00 0.00 0.00 2.50
4719 5041 8.521170 TGCATATGTCACTAGTCTAAGTTACT 57.479 34.615 4.29 0.00 0.00 2.24
4720 5042 9.623000 TGCATATGTCACTAGTCTAAGTTACTA 57.377 33.333 4.29 0.00 0.00 1.82
4753 5075 7.893658 AGTGCAAAGTAACATAGTAGTAGTGT 58.106 34.615 0.00 0.00 0.00 3.55
4754 5076 9.017509 AGTGCAAAGTAACATAGTAGTAGTGTA 57.982 33.333 0.00 0.00 0.00 2.90
4755 5077 9.630098 GTGCAAAGTAACATAGTAGTAGTGTAA 57.370 33.333 0.00 0.00 0.00 2.41
4769 5091 9.924010 AGTAGTAGTGTAATAGAGGACTTCATT 57.076 33.333 0.00 0.00 0.00 2.57
4783 5105 8.982723 AGAGGACTTCATTAATTAGCTTGTAGA 58.017 33.333 0.00 0.00 0.00 2.59
4784 5106 8.950208 AGGACTTCATTAATTAGCTTGTAGAC 57.050 34.615 0.00 0.00 0.00 2.59
4785 5107 8.763601 AGGACTTCATTAATTAGCTTGTAGACT 58.236 33.333 0.00 0.00 0.00 3.24
4786 5108 9.036671 GGACTTCATTAATTAGCTTGTAGACTC 57.963 37.037 0.00 0.00 0.00 3.36
4787 5109 9.587772 GACTTCATTAATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
4794 5116 9.587772 TTAATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
4795 5117 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
4796 5118 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
4797 5119 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
4798 5120 5.244851 AGCTTGTAGACTCATCTTGTCTTGA 59.755 40.000 1.67 0.00 41.45 3.02
4799 5121 5.928839 GCTTGTAGACTCATCTTGTCTTGAA 59.071 40.000 1.67 0.00 41.45 2.69
4800 5122 6.425114 GCTTGTAGACTCATCTTGTCTTGAAA 59.575 38.462 1.67 0.00 41.45 2.69
4801 5123 7.041780 GCTTGTAGACTCATCTTGTCTTGAAAA 60.042 37.037 1.67 0.00 41.45 2.29
4802 5124 7.953158 TGTAGACTCATCTTGTCTTGAAAAG 57.047 36.000 1.67 0.00 41.45 2.27
4803 5125 5.938438 AGACTCATCTTGTCTTGAAAAGC 57.062 39.130 0.00 0.00 45.70 3.51
4804 5126 5.371526 AGACTCATCTTGTCTTGAAAAGCA 58.628 37.500 0.00 0.00 45.70 3.91
4805 5127 5.238214 AGACTCATCTTGTCTTGAAAAGCAC 59.762 40.000 0.00 0.00 45.70 4.40
4806 5128 5.128919 ACTCATCTTGTCTTGAAAAGCACT 58.871 37.500 0.00 0.00 45.70 4.40
4807 5129 6.291377 ACTCATCTTGTCTTGAAAAGCACTA 58.709 36.000 0.00 0.00 45.70 2.74
4808 5130 6.939163 ACTCATCTTGTCTTGAAAAGCACTAT 59.061 34.615 0.00 0.00 45.70 2.12
4809 5131 7.094890 ACTCATCTTGTCTTGAAAAGCACTATG 60.095 37.037 0.00 0.00 45.70 2.23
4810 5132 6.712095 TCATCTTGTCTTGAAAAGCACTATGT 59.288 34.615 0.00 0.00 45.70 2.29
4811 5133 6.942532 TCTTGTCTTGAAAAGCACTATGTT 57.057 33.333 0.00 0.00 45.70 2.71
4812 5134 8.506437 CATCTTGTCTTGAAAAGCACTATGTTA 58.494 33.333 0.00 0.00 45.70 2.41
4813 5135 8.621532 TCTTGTCTTGAAAAGCACTATGTTAT 57.378 30.769 0.00 0.00 45.70 1.89
4814 5136 9.719355 TCTTGTCTTGAAAAGCACTATGTTATA 57.281 29.630 0.00 0.00 45.70 0.98
4815 5137 9.979270 CTTGTCTTGAAAAGCACTATGTTATAG 57.021 33.333 0.00 0.00 45.70 1.31
4816 5138 9.502091 TTGTCTTGAAAAGCACTATGTTATAGT 57.498 29.630 0.00 0.00 45.70 2.12
4851 5173 8.771920 TGTTACCACTTCTCATTAACTACATG 57.228 34.615 0.00 0.00 0.00 3.21
4852 5174 8.372459 TGTTACCACTTCTCATTAACTACATGT 58.628 33.333 2.69 2.69 0.00 3.21
4853 5175 8.870879 GTTACCACTTCTCATTAACTACATGTC 58.129 37.037 0.00 0.00 0.00 3.06
4854 5176 7.004555 ACCACTTCTCATTAACTACATGTCA 57.995 36.000 0.00 0.00 0.00 3.58
4855 5177 6.874134 ACCACTTCTCATTAACTACATGTCAC 59.126 38.462 0.00 0.00 0.00 3.67
4856 5178 6.873605 CCACTTCTCATTAACTACATGTCACA 59.126 38.462 0.00 0.00 0.00 3.58
4857 5179 7.550551 CCACTTCTCATTAACTACATGTCACAT 59.449 37.037 0.00 0.00 0.00 3.21
4858 5180 9.586435 CACTTCTCATTAACTACATGTCACATA 57.414 33.333 0.00 0.00 0.00 2.29
4861 5183 8.648557 TCTCATTAACTACATGTCACATAAGC 57.351 34.615 0.00 0.00 0.00 3.09
4862 5184 8.257306 TCTCATTAACTACATGTCACATAAGCA 58.743 33.333 0.00 0.00 0.00 3.91
4863 5185 8.785329 TCATTAACTACATGTCACATAAGCAA 57.215 30.769 0.00 0.00 0.00 3.91
4864 5186 9.225436 TCATTAACTACATGTCACATAAGCAAA 57.775 29.630 0.00 0.00 0.00 3.68
4865 5187 9.838975 CATTAACTACATGTCACATAAGCAAAA 57.161 29.630 0.00 0.00 0.00 2.44
4881 5203 4.665431 AAAAATTTCGGGGTGCGC 57.335 50.000 0.00 0.00 0.00 6.09
4882 5204 2.046108 AAAAATTTCGGGGTGCGCT 58.954 47.368 9.73 0.00 0.00 5.92
4883 5205 1.249407 AAAAATTTCGGGGTGCGCTA 58.751 45.000 9.73 0.00 0.00 4.26
4884 5206 1.470051 AAAATTTCGGGGTGCGCTAT 58.530 45.000 9.73 0.00 0.00 2.97
4885 5207 0.738389 AAATTTCGGGGTGCGCTATG 59.262 50.000 9.73 0.00 0.00 2.23
4886 5208 0.393808 AATTTCGGGGTGCGCTATGT 60.394 50.000 9.73 0.00 0.00 2.29
4887 5209 0.393808 ATTTCGGGGTGCGCTATGTT 60.394 50.000 9.73 0.00 0.00 2.71
4888 5210 0.249676 TTTCGGGGTGCGCTATGTTA 59.750 50.000 9.73 0.00 0.00 2.41
4889 5211 0.460635 TTCGGGGTGCGCTATGTTAC 60.461 55.000 9.73 0.00 0.00 2.50
4890 5212 1.143183 CGGGGTGCGCTATGTTACT 59.857 57.895 9.73 0.00 0.00 2.24
4891 5213 0.386476 CGGGGTGCGCTATGTTACTA 59.614 55.000 9.73 0.00 0.00 1.82
4892 5214 1.602165 CGGGGTGCGCTATGTTACTAG 60.602 57.143 9.73 0.00 0.00 2.57
4893 5215 1.499049 GGGTGCGCTATGTTACTAGC 58.501 55.000 9.73 0.00 40.61 3.42
4894 5216 1.068741 GGGTGCGCTATGTTACTAGCT 59.931 52.381 9.73 0.00 41.61 3.32
4895 5217 2.295349 GGGTGCGCTATGTTACTAGCTA 59.705 50.000 9.73 0.00 41.61 3.32
4896 5218 3.243636 GGGTGCGCTATGTTACTAGCTAA 60.244 47.826 9.73 0.00 41.61 3.09
4897 5219 3.982058 GGTGCGCTATGTTACTAGCTAAG 59.018 47.826 9.73 0.00 41.61 2.18
4898 5220 4.499357 GGTGCGCTATGTTACTAGCTAAGT 60.499 45.833 9.73 0.00 41.61 2.24
4899 5221 5.041940 GTGCGCTATGTTACTAGCTAAGTT 58.958 41.667 9.73 0.00 41.61 2.66
4900 5222 6.204359 GTGCGCTATGTTACTAGCTAAGTTA 58.796 40.000 9.73 0.00 41.61 2.24
4901 5223 6.142002 GTGCGCTATGTTACTAGCTAAGTTAC 59.858 42.308 9.73 0.79 41.61 2.50
4902 5224 6.039047 TGCGCTATGTTACTAGCTAAGTTACT 59.961 38.462 9.73 0.00 41.61 2.24
4903 5225 6.578172 GCGCTATGTTACTAGCTAAGTTACTC 59.422 42.308 0.00 0.00 41.61 2.59
4904 5226 7.637229 CGCTATGTTACTAGCTAAGTTACTCA 58.363 38.462 0.00 0.00 41.61 3.41
4905 5227 7.587028 CGCTATGTTACTAGCTAAGTTACTCAC 59.413 40.741 0.00 0.00 41.61 3.51
4906 5228 8.404000 GCTATGTTACTAGCTAAGTTACTCACA 58.596 37.037 0.00 0.00 40.79 3.58
4907 5229 9.719279 CTATGTTACTAGCTAAGTTACTCACAC 57.281 37.037 0.00 0.00 38.33 3.82
4908 5230 7.756395 TGTTACTAGCTAAGTTACTCACACT 57.244 36.000 0.00 0.00 38.33 3.55
4909 5231 8.853077 TGTTACTAGCTAAGTTACTCACACTA 57.147 34.615 0.00 0.00 38.33 2.74
4910 5232 9.458727 TGTTACTAGCTAAGTTACTCACACTAT 57.541 33.333 0.00 0.00 38.33 2.12
4911 5233 9.719279 GTTACTAGCTAAGTTACTCACACTATG 57.281 37.037 0.00 0.00 39.80 2.23
4912 5234 9.676861 TTACTAGCTAAGTTACTCACACTATGA 57.323 33.333 0.00 0.00 39.80 2.15
4913 5235 7.987649 ACTAGCTAAGTTACTCACACTATGAC 58.012 38.462 0.00 0.00 33.35 3.06
4914 5236 7.830201 ACTAGCTAAGTTACTCACACTATGACT 59.170 37.037 0.00 0.00 33.35 3.41
4915 5237 9.327628 CTAGCTAAGTTACTCACACTATGACTA 57.672 37.037 0.00 0.00 32.37 2.59
4916 5238 8.215926 AGCTAAGTTACTCACACTATGACTAG 57.784 38.462 0.00 0.00 32.37 2.57
4917 5239 7.830201 AGCTAAGTTACTCACACTATGACTAGT 59.170 37.037 0.00 0.00 38.79 2.57
4918 5240 8.124199 GCTAAGTTACTCACACTATGACTAGTC 58.876 40.741 16.32 16.32 35.99 2.59
4919 5241 9.386010 CTAAGTTACTCACACTATGACTAGTCT 57.614 37.037 23.01 11.45 35.99 3.24
4920 5242 8.638629 AAGTTACTCACACTATGACTAGTCTT 57.361 34.615 23.01 18.81 35.99 3.01
4921 5243 9.736414 AAGTTACTCACACTATGACTAGTCTTA 57.264 33.333 23.01 18.92 35.99 2.10
4922 5244 9.908747 AGTTACTCACACTATGACTAGTCTTAT 57.091 33.333 23.01 12.02 35.99 1.73
4960 5282 9.507280 TTCTATAACTAGTTAATGTGTACGTGC 57.493 33.333 18.88 0.00 0.00 5.34
4961 5283 8.676401 TCTATAACTAGTTAATGTGTACGTGCA 58.324 33.333 18.88 0.82 0.00 4.57
4962 5284 9.292846 CTATAACTAGTTAATGTGTACGTGCAA 57.707 33.333 18.88 0.00 0.00 4.08
4963 5285 8.712285 ATAACTAGTTAATGTGTACGTGCAAT 57.288 30.769 18.88 1.77 0.00 3.56
4964 5286 6.403333 ACTAGTTAATGTGTACGTGCAATG 57.597 37.500 8.25 0.00 0.00 2.82
4965 5287 4.078363 AGTTAATGTGTACGTGCAATGC 57.922 40.909 8.25 0.00 0.00 3.56
4966 5288 3.500299 AGTTAATGTGTACGTGCAATGCA 59.500 39.130 8.25 2.72 35.60 3.96
4981 5303 6.007936 TGCAATGCACGTTAATTTAGAAGT 57.992 33.333 2.72 0.00 31.71 3.01
4982 5304 7.135089 TGCAATGCACGTTAATTTAGAAGTA 57.865 32.000 2.72 0.00 31.71 2.24
4983 5305 7.757526 TGCAATGCACGTTAATTTAGAAGTAT 58.242 30.769 2.72 0.00 31.71 2.12
4984 5306 8.884726 TGCAATGCACGTTAATTTAGAAGTATA 58.115 29.630 2.72 0.00 31.71 1.47
4985 5307 9.878599 GCAATGCACGTTAATTTAGAAGTATAT 57.121 29.630 0.00 0.00 0.00 0.86
4998 5320 7.652300 TTAGAAGTATATTAAGTGCATGCGG 57.348 36.000 14.09 0.00 0.00 5.69
4999 5321 5.853936 AGAAGTATATTAAGTGCATGCGGA 58.146 37.500 14.09 0.00 0.00 5.54
5000 5322 6.467677 AGAAGTATATTAAGTGCATGCGGAT 58.532 36.000 14.09 3.59 0.00 4.18
5001 5323 7.611770 AGAAGTATATTAAGTGCATGCGGATA 58.388 34.615 14.09 6.94 0.00 2.59
5002 5324 8.260818 AGAAGTATATTAAGTGCATGCGGATAT 58.739 33.333 14.09 13.06 0.00 1.63
5003 5325 8.792830 AAGTATATTAAGTGCATGCGGATATT 57.207 30.769 14.09 5.62 0.00 1.28
5004 5326 9.884636 AAGTATATTAAGTGCATGCGGATATTA 57.115 29.630 14.09 4.65 0.00 0.98
5005 5327 9.884636 AGTATATTAAGTGCATGCGGATATTAA 57.115 29.630 14.09 12.83 0.00 1.40
5007 5329 8.792830 ATATTAAGTGCATGCGGATATTAAGT 57.207 30.769 14.09 4.58 0.00 2.24
5008 5330 9.884636 ATATTAAGTGCATGCGGATATTAAGTA 57.115 29.630 14.09 8.17 0.00 2.24
5009 5331 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
5010 5332 5.468540 AGTGCATGCGGATATTAAGTAGA 57.531 39.130 14.09 0.00 0.00 2.59
5011 5333 5.853936 AGTGCATGCGGATATTAAGTAGAA 58.146 37.500 14.09 0.00 0.00 2.10
5012 5334 6.467677 AGTGCATGCGGATATTAAGTAGAAT 58.532 36.000 14.09 0.00 0.00 2.40
5013 5335 7.611770 AGTGCATGCGGATATTAAGTAGAATA 58.388 34.615 14.09 0.00 0.00 1.75
5014 5336 8.260818 AGTGCATGCGGATATTAAGTAGAATAT 58.739 33.333 14.09 0.00 35.21 1.28
5015 5337 8.883731 GTGCATGCGGATATTAAGTAGAATATT 58.116 33.333 14.09 0.00 33.14 1.28
5042 5364 8.829514 TTTGCGTGTTATTATGTAATTAGCAC 57.170 30.769 0.00 0.00 0.00 4.40
5043 5365 7.780008 TGCGTGTTATTATGTAATTAGCACT 57.220 32.000 0.00 0.00 0.00 4.40
5044 5366 8.874744 TGCGTGTTATTATGTAATTAGCACTA 57.125 30.769 0.00 0.00 0.00 2.74
5045 5367 9.483916 TGCGTGTTATTATGTAATTAGCACTAT 57.516 29.630 0.00 0.00 0.00 2.12
5070 5392 4.349663 TGGTATGAAATTAACTGCACGC 57.650 40.909 0.00 0.00 0.00 5.34
5071 5393 4.006989 TGGTATGAAATTAACTGCACGCT 58.993 39.130 0.00 0.00 0.00 5.07
5072 5394 5.179533 TGGTATGAAATTAACTGCACGCTA 58.820 37.500 0.00 0.00 0.00 4.26
5073 5395 5.644206 TGGTATGAAATTAACTGCACGCTAA 59.356 36.000 0.00 0.00 0.00 3.09
5074 5396 6.149640 TGGTATGAAATTAACTGCACGCTAAA 59.850 34.615 0.00 0.00 0.00 1.85
5075 5397 6.468000 GGTATGAAATTAACTGCACGCTAAAC 59.532 38.462 0.00 0.00 0.00 2.01
5086 5408 2.390670 GCTAAACGTGTCGAGCGC 59.609 61.111 0.00 0.00 0.00 5.92
5087 5409 2.087009 GCTAAACGTGTCGAGCGCT 61.087 57.895 11.27 11.27 0.00 5.92
5088 5410 1.981668 CTAAACGTGTCGAGCGCTC 59.018 57.895 27.64 27.64 0.00 5.03
5101 5423 3.925688 GAGCGCTCGATATTGAAACAA 57.074 42.857 23.61 0.00 0.00 2.83
5102 5424 4.458951 GAGCGCTCGATATTGAAACAAT 57.541 40.909 23.61 0.00 0.00 2.71
5103 5425 4.449779 GAGCGCTCGATATTGAAACAATC 58.550 43.478 23.61 0.00 0.00 2.67
5104 5426 4.122776 AGCGCTCGATATTGAAACAATCT 58.877 39.130 2.64 0.00 0.00 2.40
5105 5427 5.289595 AGCGCTCGATATTGAAACAATCTA 58.710 37.500 2.64 0.00 0.00 1.98
5106 5428 5.403766 AGCGCTCGATATTGAAACAATCTAG 59.596 40.000 2.64 0.00 0.00 2.43
5107 5429 5.388890 GCGCTCGATATTGAAACAATCTAGG 60.389 44.000 0.00 0.00 0.00 3.02
5108 5430 5.692204 CGCTCGATATTGAAACAATCTAGGT 59.308 40.000 0.00 0.00 0.00 3.08
5109 5431 6.129062 CGCTCGATATTGAAACAATCTAGGTC 60.129 42.308 0.00 0.00 0.00 3.85
5110 5432 6.129062 GCTCGATATTGAAACAATCTAGGTCG 60.129 42.308 0.00 0.00 0.00 4.79
5111 5433 6.802608 TCGATATTGAAACAATCTAGGTCGT 58.197 36.000 0.00 0.00 31.07 4.34
5112 5434 7.262772 TCGATATTGAAACAATCTAGGTCGTT 58.737 34.615 0.00 0.00 31.07 3.85
5113 5435 7.222031 TCGATATTGAAACAATCTAGGTCGTTG 59.778 37.037 0.00 0.00 31.07 4.10
5114 5436 5.880054 ATTGAAACAATCTAGGTCGTTGG 57.120 39.130 0.00 0.00 0.00 3.77
5115 5437 4.610605 TGAAACAATCTAGGTCGTTGGA 57.389 40.909 0.00 0.00 0.00 3.53
5116 5438 5.160607 TGAAACAATCTAGGTCGTTGGAT 57.839 39.130 0.00 0.00 0.00 3.41
5117 5439 5.556915 TGAAACAATCTAGGTCGTTGGATT 58.443 37.500 0.00 0.00 0.00 3.01
5118 5440 5.411361 TGAAACAATCTAGGTCGTTGGATTG 59.589 40.000 15.77 15.77 45.85 2.67
5119 5441 4.819105 ACAATCTAGGTCGTTGGATTGA 57.181 40.909 20.63 0.25 44.27 2.57
5120 5442 5.359194 ACAATCTAGGTCGTTGGATTGAT 57.641 39.130 20.63 9.46 44.27 2.57
5121 5443 6.479972 ACAATCTAGGTCGTTGGATTGATA 57.520 37.500 20.63 0.00 44.27 2.15
5122 5444 7.067496 ACAATCTAGGTCGTTGGATTGATAT 57.933 36.000 20.63 5.48 44.27 1.63
5123 5445 6.931281 ACAATCTAGGTCGTTGGATTGATATG 59.069 38.462 20.63 5.01 44.27 1.78
5124 5446 6.918067 ATCTAGGTCGTTGGATTGATATGA 57.082 37.500 0.00 0.00 0.00 2.15
5125 5447 6.918067 TCTAGGTCGTTGGATTGATATGAT 57.082 37.500 0.00 0.00 0.00 2.45
5126 5448 7.303182 TCTAGGTCGTTGGATTGATATGATT 57.697 36.000 0.00 0.00 0.00 2.57
5127 5449 7.735917 TCTAGGTCGTTGGATTGATATGATTT 58.264 34.615 0.00 0.00 0.00 2.17
5128 5450 6.624352 AGGTCGTTGGATTGATATGATTTG 57.376 37.500 0.00 0.00 0.00 2.32
5129 5451 6.356556 AGGTCGTTGGATTGATATGATTTGA 58.643 36.000 0.00 0.00 0.00 2.69
5130 5452 7.000472 AGGTCGTTGGATTGATATGATTTGAT 59.000 34.615 0.00 0.00 0.00 2.57
5131 5453 7.040892 AGGTCGTTGGATTGATATGATTTGATG 60.041 37.037 0.00 0.00 0.00 3.07
5132 5454 7.080099 GTCGTTGGATTGATATGATTTGATGG 58.920 38.462 0.00 0.00 0.00 3.51
5133 5455 5.860182 CGTTGGATTGATATGATTTGATGGC 59.140 40.000 0.00 0.00 0.00 4.40
5134 5456 5.988310 TGGATTGATATGATTTGATGGCC 57.012 39.130 0.00 0.00 0.00 5.36
5135 5457 4.460034 TGGATTGATATGATTTGATGGCCG 59.540 41.667 0.00 0.00 0.00 6.13
5136 5458 4.701651 GGATTGATATGATTTGATGGCCGA 59.298 41.667 0.00 0.00 0.00 5.54
5137 5459 5.163683 GGATTGATATGATTTGATGGCCGAG 60.164 44.000 0.00 0.00 0.00 4.63
5138 5460 4.622260 TGATATGATTTGATGGCCGAGA 57.378 40.909 0.00 0.00 0.00 4.04
5139 5461 5.169992 TGATATGATTTGATGGCCGAGAT 57.830 39.130 0.00 0.00 0.00 2.75
5140 5462 5.563592 TGATATGATTTGATGGCCGAGATT 58.436 37.500 0.00 0.00 0.00 2.40
5141 5463 6.710278 TGATATGATTTGATGGCCGAGATTA 58.290 36.000 0.00 0.00 0.00 1.75
5142 5464 7.167535 TGATATGATTTGATGGCCGAGATTAA 58.832 34.615 0.00 0.00 0.00 1.40
5143 5465 7.830697 TGATATGATTTGATGGCCGAGATTAAT 59.169 33.333 0.00 0.00 0.00 1.40
5144 5466 6.906157 ATGATTTGATGGCCGAGATTAATT 57.094 33.333 0.00 0.00 0.00 1.40
5145 5467 9.685276 ATATGATTTGATGGCCGAGATTAATTA 57.315 29.630 0.00 0.00 0.00 1.40
5146 5468 7.815840 TGATTTGATGGCCGAGATTAATTAA 57.184 32.000 0.00 0.00 0.00 1.40
5147 5469 8.231692 TGATTTGATGGCCGAGATTAATTAAA 57.768 30.769 1.21 0.00 0.00 1.52
5148 5470 8.859090 TGATTTGATGGCCGAGATTAATTAAAT 58.141 29.630 1.21 0.00 0.00 1.40
5149 5471 9.346725 GATTTGATGGCCGAGATTAATTAAATC 57.653 33.333 1.21 5.00 43.81 2.17
5164 5486 9.981460 ATTAATTAAATCTGTCTCTTTGGGTCT 57.019 29.630 1.21 0.00 0.00 3.85
5165 5487 9.807921 TTAATTAAATCTGTCTCTTTGGGTCTT 57.192 29.630 0.00 0.00 0.00 3.01
5166 5488 8.712228 AATTAAATCTGTCTCTTTGGGTCTTT 57.288 30.769 0.00 0.00 0.00 2.52
5167 5489 8.712228 ATTAAATCTGTCTCTTTGGGTCTTTT 57.288 30.769 0.00 0.00 0.00 2.27
5168 5490 8.533569 TTAAATCTGTCTCTTTGGGTCTTTTT 57.466 30.769 0.00 0.00 0.00 1.94
5169 5491 9.635404 TTAAATCTGTCTCTTTGGGTCTTTTTA 57.365 29.630 0.00 0.00 0.00 1.52
5170 5492 8.712228 AAATCTGTCTCTTTGGGTCTTTTTAT 57.288 30.769 0.00 0.00 0.00 1.40
5171 5493 9.807921 AAATCTGTCTCTTTGGGTCTTTTTATA 57.192 29.630 0.00 0.00 0.00 0.98
5172 5494 9.981460 AATCTGTCTCTTTGGGTCTTTTTATAT 57.019 29.630 0.00 0.00 0.00 0.86
5173 5495 9.981460 ATCTGTCTCTTTGGGTCTTTTTATATT 57.019 29.630 0.00 0.00 0.00 1.28
5174 5496 9.231297 TCTGTCTCTTTGGGTCTTTTTATATTG 57.769 33.333 0.00 0.00 0.00 1.90
5175 5497 9.231297 CTGTCTCTTTGGGTCTTTTTATATTGA 57.769 33.333 0.00 0.00 0.00 2.57
5176 5498 9.753674 TGTCTCTTTGGGTCTTTTTATATTGAT 57.246 29.630 0.00 0.00 0.00 2.57
5224 5546 7.149569 CATTTATGCCATATAGGTCCTTGTG 57.850 40.000 0.00 0.00 40.61 3.33
5225 5547 6.508030 TTTATGCCATATAGGTCCTTGTGA 57.492 37.500 0.00 0.00 40.61 3.58
5226 5548 3.838244 TGCCATATAGGTCCTTGTGAC 57.162 47.619 0.00 0.00 43.67 3.67
5227 5549 2.102420 TGCCATATAGGTCCTTGTGACG 59.898 50.000 0.00 0.00 45.46 4.35
5228 5550 2.364324 GCCATATAGGTCCTTGTGACGA 59.636 50.000 0.00 0.00 45.46 4.20
5229 5551 3.553096 GCCATATAGGTCCTTGTGACGAG 60.553 52.174 0.00 0.00 45.46 4.18
5230 5552 3.637229 CCATATAGGTCCTTGTGACGAGT 59.363 47.826 0.00 0.00 45.46 4.18
5231 5553 4.099573 CCATATAGGTCCTTGTGACGAGTT 59.900 45.833 0.00 0.00 45.46 3.01
5232 5554 5.395324 CCATATAGGTCCTTGTGACGAGTTT 60.395 44.000 0.00 0.00 45.46 2.66
5233 5555 2.240493 AGGTCCTTGTGACGAGTTTG 57.760 50.000 0.00 0.00 45.46 2.93
5234 5556 1.485066 AGGTCCTTGTGACGAGTTTGT 59.515 47.619 0.00 0.00 45.46 2.83
5235 5557 1.597663 GGTCCTTGTGACGAGTTTGTG 59.402 52.381 0.00 0.00 45.46 3.33
5236 5558 2.546778 GTCCTTGTGACGAGTTTGTGA 58.453 47.619 0.00 0.00 33.49 3.58
5237 5559 3.131396 GTCCTTGTGACGAGTTTGTGAT 58.869 45.455 0.00 0.00 33.49 3.06
5238 5560 3.059597 GTCCTTGTGACGAGTTTGTGATG 60.060 47.826 0.00 0.00 33.49 3.07
5239 5561 3.130633 CCTTGTGACGAGTTTGTGATGA 58.869 45.455 0.00 0.00 0.00 2.92
5240 5562 3.185188 CCTTGTGACGAGTTTGTGATGAG 59.815 47.826 0.00 0.00 0.00 2.90
5241 5563 3.452755 TGTGACGAGTTTGTGATGAGT 57.547 42.857 0.00 0.00 0.00 3.41
5242 5564 3.792401 TGTGACGAGTTTGTGATGAGTT 58.208 40.909 0.00 0.00 0.00 3.01
5243 5565 3.555547 TGTGACGAGTTTGTGATGAGTTG 59.444 43.478 0.00 0.00 0.00 3.16
5244 5566 3.059597 GTGACGAGTTTGTGATGAGTTGG 60.060 47.826 0.00 0.00 0.00 3.77
5245 5567 3.181470 TGACGAGTTTGTGATGAGTTGGA 60.181 43.478 0.00 0.00 0.00 3.53
5246 5568 3.131396 ACGAGTTTGTGATGAGTTGGAC 58.869 45.455 0.00 0.00 0.00 4.02
5247 5569 3.181465 ACGAGTTTGTGATGAGTTGGACT 60.181 43.478 0.00 0.00 0.00 3.85
5248 5570 3.430218 CGAGTTTGTGATGAGTTGGACTC 59.570 47.826 1.21 1.21 45.26 3.36
5262 5584 7.455331 GAGTTGGACTCAATTTGAACAAAAG 57.545 36.000 4.12 0.92 44.45 2.27
5263 5585 5.812127 AGTTGGACTCAATTTGAACAAAAGC 59.188 36.000 4.12 2.83 35.10 3.51
5264 5586 5.596836 TGGACTCAATTTGAACAAAAGCT 57.403 34.783 4.12 0.00 33.56 3.74
5265 5587 6.707440 TGGACTCAATTTGAACAAAAGCTA 57.293 33.333 4.12 0.00 33.56 3.32
5266 5588 6.503524 TGGACTCAATTTGAACAAAAGCTAC 58.496 36.000 4.12 0.00 33.56 3.58
5267 5589 5.625311 GGACTCAATTTGAACAAAAGCTACG 59.375 40.000 4.12 0.00 33.56 3.51
5268 5590 6.371809 ACTCAATTTGAACAAAAGCTACGA 57.628 33.333 4.12 0.00 33.56 3.43
5269 5591 6.199393 ACTCAATTTGAACAAAAGCTACGAC 58.801 36.000 4.12 0.00 33.56 4.34
5270 5592 5.201910 TCAATTTGAACAAAAGCTACGACG 58.798 37.500 4.12 0.00 33.56 5.12
5271 5593 5.006844 TCAATTTGAACAAAAGCTACGACGA 59.993 36.000 0.00 0.00 33.56 4.20
5272 5594 4.446857 TTTGAACAAAAGCTACGACGAG 57.553 40.909 0.00 0.00 0.00 4.18
5273 5595 3.358707 TGAACAAAAGCTACGACGAGA 57.641 42.857 0.00 0.00 0.00 4.04
5274 5596 3.708890 TGAACAAAAGCTACGACGAGAA 58.291 40.909 0.00 0.00 0.00 2.87
5275 5597 3.734231 TGAACAAAAGCTACGACGAGAAG 59.266 43.478 0.00 0.00 0.00 2.85
5276 5598 3.637998 ACAAAAGCTACGACGAGAAGA 57.362 42.857 0.00 0.00 0.00 2.87
5277 5599 4.175787 ACAAAAGCTACGACGAGAAGAT 57.824 40.909 0.00 0.00 0.00 2.40
5278 5600 5.306532 ACAAAAGCTACGACGAGAAGATA 57.693 39.130 0.00 0.00 0.00 1.98
5279 5601 5.706916 ACAAAAGCTACGACGAGAAGATAA 58.293 37.500 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.711399 TCCACTTTCAGGCATCTATGATG 58.289 43.478 3.42 3.42 0.00 3.07
1 2 5.072736 TCATCCACTTTCAGGCATCTATGAT 59.927 40.000 0.00 0.00 0.00 2.45
2 3 4.409901 TCATCCACTTTCAGGCATCTATGA 59.590 41.667 0.00 0.00 0.00 2.15
3 4 4.711399 TCATCCACTTTCAGGCATCTATG 58.289 43.478 0.00 0.00 0.00 2.23
5 6 4.033009 TCTCATCCACTTTCAGGCATCTA 58.967 43.478 0.00 0.00 0.00 1.98
6 7 2.842496 TCTCATCCACTTTCAGGCATCT 59.158 45.455 0.00 0.00 0.00 2.90
7 8 3.272574 TCTCATCCACTTTCAGGCATC 57.727 47.619 0.00 0.00 0.00 3.91
8 9 3.009916 AGTTCTCATCCACTTTCAGGCAT 59.990 43.478 0.00 0.00 0.00 4.40
9 10 2.373169 AGTTCTCATCCACTTTCAGGCA 59.627 45.455 0.00 0.00 0.00 4.75
10 11 3.064900 AGTTCTCATCCACTTTCAGGC 57.935 47.619 0.00 0.00 0.00 4.85
11 12 4.392940 ACAAGTTCTCATCCACTTTCAGG 58.607 43.478 0.00 0.00 30.48 3.86
12 13 4.453819 GGACAAGTTCTCATCCACTTTCAG 59.546 45.833 0.00 0.00 30.48 3.02
13 14 4.103153 AGGACAAGTTCTCATCCACTTTCA 59.897 41.667 0.00 0.00 30.48 2.69
14 15 4.646572 AGGACAAGTTCTCATCCACTTTC 58.353 43.478 0.00 0.00 30.48 2.62
15 16 4.713792 AGGACAAGTTCTCATCCACTTT 57.286 40.909 0.00 0.00 30.48 2.66
16 17 4.713792 AAGGACAAGTTCTCATCCACTT 57.286 40.909 0.00 0.00 33.29 3.16
17 18 4.103153 TGAAAGGACAAGTTCTCATCCACT 59.897 41.667 0.00 0.00 33.33 4.00
18 19 4.389374 TGAAAGGACAAGTTCTCATCCAC 58.611 43.478 0.00 0.00 33.33 4.02
19 20 4.705110 TGAAAGGACAAGTTCTCATCCA 57.295 40.909 0.00 0.00 33.33 3.41
20 21 5.707298 TCAATGAAAGGACAAGTTCTCATCC 59.293 40.000 0.00 0.00 0.00 3.51
21 22 6.606768 GTCAATGAAAGGACAAGTTCTCATC 58.393 40.000 0.00 0.00 34.22 2.92
22 23 5.180117 CGTCAATGAAAGGACAAGTTCTCAT 59.820 40.000 0.00 0.00 33.66 2.90
23 24 4.511454 CGTCAATGAAAGGACAAGTTCTCA 59.489 41.667 0.00 0.00 33.66 3.27
24 25 4.750098 TCGTCAATGAAAGGACAAGTTCTC 59.250 41.667 0.00 0.00 33.66 2.87
25 26 4.703897 TCGTCAATGAAAGGACAAGTTCT 58.296 39.130 0.00 0.00 33.66 3.01
26 27 5.179368 TCATCGTCAATGAAAGGACAAGTTC 59.821 40.000 0.00 0.00 41.49 3.01
27 28 5.063204 TCATCGTCAATGAAAGGACAAGTT 58.937 37.500 0.00 0.00 41.49 2.66
28 29 4.641396 TCATCGTCAATGAAAGGACAAGT 58.359 39.130 0.00 0.00 41.49 3.16
38 39 6.859420 TTCAGTCTTTTTCATCGTCAATGA 57.141 33.333 0.00 0.00 42.76 2.57
39 40 9.611284 TTATTTCAGTCTTTTTCATCGTCAATG 57.389 29.630 0.00 0.00 36.65 2.82
40 41 9.612620 GTTATTTCAGTCTTTTTCATCGTCAAT 57.387 29.630 0.00 0.00 0.00 2.57
41 42 8.836413 AGTTATTTCAGTCTTTTTCATCGTCAA 58.164 29.630 0.00 0.00 0.00 3.18
42 43 8.378172 AGTTATTTCAGTCTTTTTCATCGTCA 57.622 30.769 0.00 0.00 0.00 4.35
43 44 9.665264 AAAGTTATTTCAGTCTTTTTCATCGTC 57.335 29.630 0.00 0.00 0.00 4.20
75 76 9.788960 GGTTCAAGTATGGATCTTGTATTTTTC 57.211 33.333 5.74 0.00 41.78 2.29
84 85 4.536090 TCACCAGGTTCAAGTATGGATCTT 59.464 41.667 0.00 0.00 36.62 2.40
90 91 3.005554 CAGCTCACCAGGTTCAAGTATG 58.994 50.000 0.00 0.00 0.00 2.39
97 99 1.946283 GCTAACCAGCTCACCAGGTTC 60.946 57.143 8.58 0.00 44.09 3.62
118 120 7.275560 CCTCGTTTGTTTTTCAAGTTTCAGATT 59.724 33.333 0.00 0.00 37.35 2.40
130 132 3.363341 TGATGGCCTCGTTTGTTTTTC 57.637 42.857 3.32 0.00 0.00 2.29
179 181 2.138320 CGTCCCGATCAAATCATCCAG 58.862 52.381 0.00 0.00 0.00 3.86
207 209 2.901249 CTAGTTAACCGTGGGTCCATG 58.099 52.381 0.88 2.31 33.12 3.66
208 210 1.208776 GCTAGTTAACCGTGGGTCCAT 59.791 52.381 0.88 0.00 33.12 3.41
209 211 0.609662 GCTAGTTAACCGTGGGTCCA 59.390 55.000 0.88 0.00 33.12 4.02
210 212 0.900421 AGCTAGTTAACCGTGGGTCC 59.100 55.000 0.88 0.00 33.12 4.46
211 213 2.005560 GCAGCTAGTTAACCGTGGGTC 61.006 57.143 0.88 0.00 33.12 4.46
212 214 0.036671 GCAGCTAGTTAACCGTGGGT 60.037 55.000 0.88 0.00 37.65 4.51
213 215 0.249398 AGCAGCTAGTTAACCGTGGG 59.751 55.000 0.88 0.00 0.00 4.61
214 216 1.641577 GAGCAGCTAGTTAACCGTGG 58.358 55.000 0.88 0.00 0.00 4.94
215 217 1.269166 CGAGCAGCTAGTTAACCGTG 58.731 55.000 0.88 0.00 0.00 4.94
216 218 0.458025 GCGAGCAGCTAGTTAACCGT 60.458 55.000 0.88 0.00 44.04 4.83
217 219 1.472276 CGCGAGCAGCTAGTTAACCG 61.472 60.000 0.00 0.00 45.59 4.44
218 220 0.179145 TCGCGAGCAGCTAGTTAACC 60.179 55.000 3.71 0.00 45.59 2.85
219 221 0.915227 GTCGCGAGCAGCTAGTTAAC 59.085 55.000 10.24 0.00 45.59 2.01
420 438 4.712763 CGATTTTTCTTTCCTTGTCTCCG 58.287 43.478 0.00 0.00 0.00 4.63
426 444 1.985684 GCGGCGATTTTTCTTTCCTTG 59.014 47.619 12.98 0.00 0.00 3.61
468 490 4.483311 CTGTAGAGTTTTAGACGTGGGAC 58.517 47.826 0.00 0.00 0.00 4.46
480 502 5.746990 ATACAACTGGAGCTGTAGAGTTT 57.253 39.130 0.00 0.00 31.15 2.66
505 536 1.745890 CAGATCCAATCGGGCGGTA 59.254 57.895 0.00 0.00 36.21 4.02
516 547 2.040464 GGGAGGGAGGCAGATCCA 60.040 66.667 4.47 0.00 41.52 3.41
580 630 2.746277 GCTTACCACCACCGCCTG 60.746 66.667 0.00 0.00 0.00 4.85
581 631 4.029809 GGCTTACCACCACCGCCT 62.030 66.667 0.00 0.00 37.76 5.52
608 658 1.033574 GAGATAGGGTGGTCGGAGTG 58.966 60.000 0.00 0.00 0.00 3.51
618 668 1.147399 CGGGTAAGGGAGAGATAGGGT 59.853 57.143 0.00 0.00 0.00 4.34
623 675 0.824182 CGAGCGGGTAAGGGAGAGAT 60.824 60.000 0.00 0.00 0.00 2.75
625 677 3.121019 CGAGCGGGTAAGGGAGAG 58.879 66.667 0.00 0.00 0.00 3.20
694 746 4.959596 GGATCTGGCCGAGAGCGC 62.960 72.222 0.00 0.00 45.17 5.92
904 974 1.677637 CCTACCGAGAGCAGGGGAAC 61.678 65.000 0.00 0.00 0.00 3.62
912 985 1.104630 AGCAGTTACCTACCGAGAGC 58.895 55.000 0.00 0.00 0.00 4.09
913 986 4.391155 AGATAGCAGTTACCTACCGAGAG 58.609 47.826 0.00 0.00 0.00 3.20
915 988 3.186817 CGAGATAGCAGTTACCTACCGAG 59.813 52.174 0.00 0.00 0.00 4.63
923 996 2.860735 CACAAGCCGAGATAGCAGTTAC 59.139 50.000 0.00 0.00 0.00 2.50
939 1012 1.526686 TCACCTGCCTGCACACAAG 60.527 57.895 0.00 0.00 0.00 3.16
955 1028 0.891373 GCTCCTGCTAGTCACAGTCA 59.109 55.000 0.00 0.00 36.03 3.41
1115 1191 1.823610 GTAGGACGGCCTTGTAGAAGT 59.176 52.381 19.46 0.00 43.90 3.01
1118 1194 1.005097 TGAGTAGGACGGCCTTGTAGA 59.995 52.381 19.46 0.00 43.90 2.59
1120 1196 1.180029 GTGAGTAGGACGGCCTTGTA 58.820 55.000 19.46 0.00 43.90 2.41
1121 1197 1.874345 CGTGAGTAGGACGGCCTTGT 61.874 60.000 19.46 1.61 43.90 3.16
1122 1198 1.153823 CGTGAGTAGGACGGCCTTG 60.154 63.158 19.46 0.00 43.90 3.61
1128 1204 3.066900 AGAAATGATCCGTGAGTAGGACG 59.933 47.826 0.00 0.00 41.10 4.79
1225 1310 4.730949 TTACCATGTGCTAGTGTAGACC 57.269 45.455 0.00 0.00 0.00 3.85
1409 1584 6.870965 GTGTTAGAACATGAAGAGTCACATCT 59.129 38.462 0.00 0.00 41.59 2.90
1459 1758 1.707427 ACAGTTTCCTCAATGCCCTCT 59.293 47.619 0.00 0.00 0.00 3.69
1465 1764 2.494059 ACACCGACAGTTTCCTCAATG 58.506 47.619 0.00 0.00 0.00 2.82
1477 1776 0.394488 TTCCTTTGCCAACACCGACA 60.394 50.000 0.00 0.00 0.00 4.35
1570 1869 0.866061 CGTACCAGCGAGGATTGACG 60.866 60.000 5.19 5.58 41.22 4.35
1640 1939 3.777925 CGCGTTGTCGGCCTTCAG 61.778 66.667 0.00 0.00 37.56 3.02
1714 2013 0.892063 GCCACCTATCGATCTCCTCC 59.108 60.000 0.00 0.00 0.00 4.30
1726 2025 4.019411 TCATCACAGATTTCAAGCCACCTA 60.019 41.667 0.00 0.00 0.00 3.08
1810 2109 3.056328 GCCCAGTTGCGGTCCTTC 61.056 66.667 0.00 0.00 0.00 3.46
1843 2142 1.602377 GGAACACCAGGAAACTTGACG 59.398 52.381 0.00 0.00 40.21 4.35
1876 2175 2.178890 GCATCCTTGCCTCTGCGAG 61.179 63.158 0.00 0.00 46.90 5.03
2260 2559 1.070376 CACAGAACACAGTGCACATCG 60.070 52.381 21.04 9.53 0.00 3.84
2524 2823 2.528743 GGTGATGGATGCAGTCGCG 61.529 63.158 0.00 0.00 42.97 5.87
2623 2922 1.904537 TGCTTTCTCCATCTCTGCTCA 59.095 47.619 0.00 0.00 0.00 4.26
2884 3183 0.693049 AGATGAAGTCCTTTGCCCGT 59.307 50.000 0.00 0.00 0.00 5.28
3022 3321 1.394917 CGTTCTCCGGCTTCAATCTTG 59.605 52.381 0.00 0.00 0.00 3.02
3094 3393 3.486375 CCAGAATTGCTTGTACAGATGCG 60.486 47.826 0.00 0.00 0.00 4.73
3181 3480 2.247358 TCCTTGGGGTTTGCTTCAATC 58.753 47.619 0.00 0.00 0.00 2.67
3396 3695 9.104965 CATGCAATTCATTCAAAACCTTGATAT 57.895 29.630 0.00 0.00 41.22 1.63
3402 3701 6.527423 AGAACATGCAATTCATTCAAAACCT 58.473 32.000 14.52 0.00 31.79 3.50
3438 3737 6.456853 CGCTGCTTCAACATGCTTTATAAGTA 60.457 38.462 0.00 0.00 0.00 2.24
3439 3738 5.644644 GCTGCTTCAACATGCTTTATAAGT 58.355 37.500 0.00 0.00 0.00 2.24
3440 3739 4.731961 CGCTGCTTCAACATGCTTTATAAG 59.268 41.667 0.00 0.00 0.00 1.73
3441 3740 4.661125 CGCTGCTTCAACATGCTTTATAA 58.339 39.130 0.00 0.00 0.00 0.98
3442 3741 3.487376 GCGCTGCTTCAACATGCTTTATA 60.487 43.478 0.00 0.00 0.00 0.98
3443 3742 2.733227 GCGCTGCTTCAACATGCTTTAT 60.733 45.455 0.00 0.00 0.00 1.40
3468 3767 6.604396 TGGATGAACAGATGCAAACATTAGAT 59.396 34.615 0.00 0.00 36.35 1.98
3483 3782 2.603110 CGAACCGTGTATGGATGAACAG 59.397 50.000 0.00 0.00 0.00 3.16
3497 3796 1.970092 TTTCCCAATGAACGAACCGT 58.030 45.000 0.00 0.00 43.97 4.83
3498 3797 2.292292 AGTTTTCCCAATGAACGAACCG 59.708 45.455 0.00 0.00 31.05 4.44
3499 3798 5.441709 TTAGTTTTCCCAATGAACGAACC 57.558 39.130 0.00 0.00 31.05 3.62
3500 3799 6.745907 GCTATTAGTTTTCCCAATGAACGAAC 59.254 38.462 0.00 0.00 31.05 3.95
3501 3800 6.431543 TGCTATTAGTTTTCCCAATGAACGAA 59.568 34.615 0.00 0.00 31.05 3.85
3509 3811 7.589958 TTTGAGTTGCTATTAGTTTTCCCAA 57.410 32.000 0.00 0.00 0.00 4.12
3520 3822 7.530426 AGGAAACTGAATTTGAGTTGCTATT 57.470 32.000 6.67 0.00 41.13 1.73
3523 3825 5.221322 GGAAGGAAACTGAATTTGAGTTGCT 60.221 40.000 6.67 0.00 42.68 3.91
3597 3903 9.461312 AGGAAGCATATGACAAGTACATTTTAA 57.539 29.630 6.97 0.00 0.00 1.52
3600 3906 8.893727 GTTAGGAAGCATATGACAAGTACATTT 58.106 33.333 6.97 0.00 0.00 2.32
3652 3960 9.491675 TGCAATCTTCAAATGAAATACAATGTT 57.508 25.926 0.00 0.00 33.07 2.71
3653 3961 9.661563 ATGCAATCTTCAAATGAAATACAATGT 57.338 25.926 0.00 0.00 33.07 2.71
3656 3964 9.932207 AGAATGCAATCTTCAAATGAAATACAA 57.068 25.926 0.00 0.00 33.07 2.41
3657 3965 9.932207 AAGAATGCAATCTTCAAATGAAATACA 57.068 25.926 11.34 0.00 34.60 2.29
3705 4013 6.588756 ACAAGCGATAGTTTATTTCGACTGAA 59.411 34.615 0.00 0.00 37.46 3.02
3709 4017 7.009907 ACCTAACAAGCGATAGTTTATTTCGAC 59.990 37.037 0.00 0.00 37.46 4.20
3710 4018 7.037438 ACCTAACAAGCGATAGTTTATTTCGA 58.963 34.615 0.00 0.00 37.46 3.71
3711 4019 7.230466 ACCTAACAAGCGATAGTTTATTTCG 57.770 36.000 0.00 0.00 37.46 3.46
3716 4024 6.604795 AGGAGTACCTAACAAGCGATAGTTTA 59.395 38.462 0.00 0.00 45.83 2.01
3728 4038 2.331166 TGCCAACAGGAGTACCTAACA 58.669 47.619 0.00 0.00 45.94 2.41
3734 4044 1.975660 TGGTTTGCCAACAGGAGTAC 58.024 50.000 2.78 0.00 42.83 2.73
3758 4068 9.388506 CAGAGGAGAACAATATAAATCAGTTGT 57.611 33.333 0.00 0.00 36.43 3.32
3763 4073 7.770433 CCACACAGAGGAGAACAATATAAATCA 59.230 37.037 0.00 0.00 0.00 2.57
3766 4076 7.252612 TCCACACAGAGGAGAACAATATAAA 57.747 36.000 0.00 0.00 0.00 1.40
3780 4090 3.944015 GGATCCTTTCAATCCACACAGAG 59.056 47.826 3.84 0.00 42.01 3.35
3781 4091 3.588842 AGGATCCTTTCAATCCACACAGA 59.411 43.478 9.02 0.00 44.39 3.41
3782 4092 3.693085 CAGGATCCTTTCAATCCACACAG 59.307 47.826 13.00 0.00 44.39 3.66
3794 4104 8.885693 AGCTTTAAAGAATAACAGGATCCTTT 57.114 30.769 19.48 12.41 0.00 3.11
3810 4120 8.834749 AAGAGGTGAAGTTAGTAGCTTTAAAG 57.165 34.615 11.02 11.02 0.00 1.85
3811 4121 7.876582 GGAAGAGGTGAAGTTAGTAGCTTTAAA 59.123 37.037 0.40 0.00 0.00 1.52
3812 4122 7.015877 TGGAAGAGGTGAAGTTAGTAGCTTTAA 59.984 37.037 0.40 0.00 0.00 1.52
3813 4123 6.495872 TGGAAGAGGTGAAGTTAGTAGCTTTA 59.504 38.462 0.40 0.00 0.00 1.85
3814 4124 5.307196 TGGAAGAGGTGAAGTTAGTAGCTTT 59.693 40.000 0.40 0.00 0.00 3.51
4000 4310 1.666011 CAGGTGCTCGTACCACAGT 59.334 57.895 6.94 0.00 43.37 3.55
4087 4397 5.181622 CGAGTATATGTCCCAGTACTTCTCC 59.818 48.000 0.00 0.00 0.00 3.71
4090 4400 5.335035 GCTCGAGTATATGTCCCAGTACTTC 60.335 48.000 15.13 0.00 0.00 3.01
4288 4598 2.224843 ACACACAGGAAATGCAGGATGA 60.225 45.455 0.00 0.00 39.69 2.92
4313 4623 5.652014 ACAAGTTCTGAATCACCAAACTGAA 59.348 36.000 0.00 0.00 30.95 3.02
4325 4635 9.956720 CTATTTTCTGAAACACAAGTTCTGAAT 57.043 29.630 1.58 0.00 36.84 2.57
4368 4690 1.593006 CTGCGCTTATTAACAGTCCCG 59.407 52.381 9.73 0.00 0.00 5.14
4374 4696 2.482336 CACACCACTGCGCTTATTAACA 59.518 45.455 9.73 0.00 0.00 2.41
4530 4852 3.425227 CGCGTTAACTTTATTGTCCACCC 60.425 47.826 3.71 0.00 0.00 4.61
4602 4924 5.620738 AACATACAGCACTCTGATACCAT 57.379 39.130 0.00 0.00 42.95 3.55
4655 4977 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
4656 4978 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
4657 4979 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
4658 4980 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
4659 4981 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
4660 4982 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
4661 4983 7.793948 ATATAAGTTACTCCCCACTATGACC 57.206 40.000 0.00 0.00 0.00 4.02
4670 4992 9.819267 GCATGATACTAATATAAGTTACTCCCC 57.181 37.037 0.00 0.00 0.00 4.81
4685 5007 9.301897 AGACTAGTGACATATGCATGATACTAA 57.698 33.333 10.16 0.00 35.63 2.24
4686 5008 8.870075 AGACTAGTGACATATGCATGATACTA 57.130 34.615 10.16 9.59 35.27 1.82
4687 5009 7.773489 AGACTAGTGACATATGCATGATACT 57.227 36.000 10.16 8.97 36.53 2.12
4688 5010 9.566530 CTTAGACTAGTGACATATGCATGATAC 57.433 37.037 10.16 1.55 35.96 2.24
4689 5011 9.301897 ACTTAGACTAGTGACATATGCATGATA 57.698 33.333 10.16 0.00 35.96 2.15
4690 5012 8.187913 ACTTAGACTAGTGACATATGCATGAT 57.812 34.615 10.16 0.00 35.96 2.45
4691 5013 7.588497 ACTTAGACTAGTGACATATGCATGA 57.412 36.000 10.16 0.00 35.96 3.07
4692 5014 9.186323 GTAACTTAGACTAGTGACATATGCATG 57.814 37.037 10.16 0.00 38.21 4.06
4693 5015 9.137459 AGTAACTTAGACTAGTGACATATGCAT 57.863 33.333 3.79 3.79 32.71 3.96
4694 5016 8.521170 AGTAACTTAGACTAGTGACATATGCA 57.479 34.615 0.00 0.00 32.71 3.96
4727 5049 9.017509 ACACTACTACTATGTTACTTTGCACTA 57.982 33.333 0.00 0.00 0.00 2.74
4728 5050 7.893658 ACACTACTACTATGTTACTTTGCACT 58.106 34.615 0.00 0.00 0.00 4.40
4729 5051 9.630098 TTACACTACTACTATGTTACTTTGCAC 57.370 33.333 0.00 0.00 0.00 4.57
4743 5065 9.924010 AATGAAGTCCTCTATTACACTACTACT 57.076 33.333 0.00 0.00 0.00 2.57
4757 5079 8.982723 TCTACAAGCTAATTAATGAAGTCCTCT 58.017 33.333 0.00 0.00 0.00 3.69
4758 5080 9.036671 GTCTACAAGCTAATTAATGAAGTCCTC 57.963 37.037 0.00 0.00 0.00 3.71
4759 5081 8.763601 AGTCTACAAGCTAATTAATGAAGTCCT 58.236 33.333 0.00 0.00 0.00 3.85
4760 5082 8.950208 AGTCTACAAGCTAATTAATGAAGTCC 57.050 34.615 0.00 0.00 0.00 3.85
4761 5083 9.587772 TGAGTCTACAAGCTAATTAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
4768 5090 9.587772 GACAAGATGAGTCTACAAGCTAATTAA 57.412 33.333 0.00 0.00 33.30 1.40
4769 5091 8.972127 AGACAAGATGAGTCTACAAGCTAATTA 58.028 33.333 0.00 0.00 44.10 1.40
4770 5092 7.846066 AGACAAGATGAGTCTACAAGCTAATT 58.154 34.615 0.00 0.00 44.10 1.40
4771 5093 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
4772 5094 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
4773 5095 6.434340 TCAAGACAAGATGAGTCTACAAGCTA 59.566 38.462 0.00 0.00 45.11 3.32
4774 5096 5.244851 TCAAGACAAGATGAGTCTACAAGCT 59.755 40.000 0.00 0.00 45.11 3.74
4775 5097 5.473931 TCAAGACAAGATGAGTCTACAAGC 58.526 41.667 0.00 0.00 45.11 4.01
4776 5098 7.953158 TTTCAAGACAAGATGAGTCTACAAG 57.047 36.000 0.00 0.00 45.11 3.16
4777 5099 7.041780 GCTTTTCAAGACAAGATGAGTCTACAA 60.042 37.037 0.41 0.00 45.11 2.41
4778 5100 6.425114 GCTTTTCAAGACAAGATGAGTCTACA 59.575 38.462 0.41 0.00 45.11 2.74
4779 5101 6.425114 TGCTTTTCAAGACAAGATGAGTCTAC 59.575 38.462 0.41 0.00 45.11 2.59
4780 5102 6.425114 GTGCTTTTCAAGACAAGATGAGTCTA 59.575 38.462 0.41 0.00 45.11 2.59
4782 5104 5.238214 AGTGCTTTTCAAGACAAGATGAGTC 59.762 40.000 0.41 0.00 36.26 3.36
4783 5105 5.128919 AGTGCTTTTCAAGACAAGATGAGT 58.871 37.500 0.41 0.00 0.00 3.41
4784 5106 5.686159 AGTGCTTTTCAAGACAAGATGAG 57.314 39.130 0.41 0.00 0.00 2.90
4785 5107 6.712095 ACATAGTGCTTTTCAAGACAAGATGA 59.288 34.615 0.41 0.00 0.00 2.92
4786 5108 6.906659 ACATAGTGCTTTTCAAGACAAGATG 58.093 36.000 0.41 0.00 0.00 2.90
4787 5109 7.516198 AACATAGTGCTTTTCAAGACAAGAT 57.484 32.000 0.41 0.00 0.00 2.40
4788 5110 6.942532 AACATAGTGCTTTTCAAGACAAGA 57.057 33.333 0.41 0.00 0.00 3.02
4789 5111 9.979270 CTATAACATAGTGCTTTTCAAGACAAG 57.021 33.333 0.00 0.00 0.00 3.16
4790 5112 9.502091 ACTATAACATAGTGCTTTTCAAGACAA 57.498 29.630 0.00 0.00 0.00 3.18
4827 5149 8.773404 ACATGTAGTTAATGAGAAGTGGTAAC 57.227 34.615 0.00 0.00 0.00 2.50
4828 5150 8.590204 TGACATGTAGTTAATGAGAAGTGGTAA 58.410 33.333 0.00 0.00 0.00 2.85
4829 5151 8.033038 GTGACATGTAGTTAATGAGAAGTGGTA 58.967 37.037 0.00 0.00 0.00 3.25
4830 5152 6.874134 GTGACATGTAGTTAATGAGAAGTGGT 59.126 38.462 0.00 0.00 0.00 4.16
4831 5153 6.873605 TGTGACATGTAGTTAATGAGAAGTGG 59.126 38.462 0.00 0.00 0.00 4.00
4832 5154 7.889589 TGTGACATGTAGTTAATGAGAAGTG 57.110 36.000 0.00 0.00 0.00 3.16
4835 5157 9.098355 GCTTATGTGACATGTAGTTAATGAGAA 57.902 33.333 8.61 0.00 0.00 2.87
4836 5158 8.257306 TGCTTATGTGACATGTAGTTAATGAGA 58.743 33.333 8.61 0.00 0.00 3.27
4837 5159 8.424274 TGCTTATGTGACATGTAGTTAATGAG 57.576 34.615 8.61 0.00 0.00 2.90
4838 5160 8.785329 TTGCTTATGTGACATGTAGTTAATGA 57.215 30.769 8.61 0.00 0.00 2.57
4839 5161 9.838975 TTTTGCTTATGTGACATGTAGTTAATG 57.161 29.630 8.61 0.00 0.00 1.90
4864 5186 1.249407 TAGCGCACCCCGAAATTTTT 58.751 45.000 11.47 0.00 40.02 1.94
4865 5187 1.134175 CATAGCGCACCCCGAAATTTT 59.866 47.619 11.47 0.00 40.02 1.82
4866 5188 0.738389 CATAGCGCACCCCGAAATTT 59.262 50.000 11.47 0.00 40.02 1.82
4867 5189 0.393808 ACATAGCGCACCCCGAAATT 60.394 50.000 11.47 0.00 40.02 1.82
4868 5190 0.393808 AACATAGCGCACCCCGAAAT 60.394 50.000 11.47 0.00 40.02 2.17
4869 5191 0.249676 TAACATAGCGCACCCCGAAA 59.750 50.000 11.47 0.00 40.02 3.46
4870 5192 0.460635 GTAACATAGCGCACCCCGAA 60.461 55.000 11.47 0.00 40.02 4.30
4871 5193 1.142314 GTAACATAGCGCACCCCGA 59.858 57.895 11.47 0.00 40.02 5.14
4872 5194 0.386476 TAGTAACATAGCGCACCCCG 59.614 55.000 11.47 0.00 40.75 5.73
4873 5195 1.872653 GCTAGTAACATAGCGCACCCC 60.873 57.143 11.47 0.00 38.90 4.95
4874 5196 1.499049 GCTAGTAACATAGCGCACCC 58.501 55.000 11.47 0.00 38.90 4.61
4881 5203 9.719279 GTGTGAGTAACTTAGCTAGTAACATAG 57.281 37.037 0.00 0.00 35.54 2.23
4882 5204 9.458727 AGTGTGAGTAACTTAGCTAGTAACATA 57.541 33.333 0.00 0.00 35.54 2.29
4883 5205 8.350852 AGTGTGAGTAACTTAGCTAGTAACAT 57.649 34.615 0.00 0.00 35.54 2.71
4884 5206 7.756395 AGTGTGAGTAACTTAGCTAGTAACA 57.244 36.000 0.00 0.00 35.54 2.41
4885 5207 9.719279 CATAGTGTGAGTAACTTAGCTAGTAAC 57.281 37.037 0.00 0.00 35.54 2.50
4886 5208 9.676861 TCATAGTGTGAGTAACTTAGCTAGTAA 57.323 33.333 0.00 0.00 32.39 2.24
4887 5209 9.107177 GTCATAGTGTGAGTAACTTAGCTAGTA 57.893 37.037 0.00 0.00 37.56 1.82
4888 5210 7.830201 AGTCATAGTGTGAGTAACTTAGCTAGT 59.170 37.037 0.00 0.00 38.74 2.57
4889 5211 8.215926 AGTCATAGTGTGAGTAACTTAGCTAG 57.784 38.462 0.00 0.00 38.74 3.42
4890 5212 9.327628 CTAGTCATAGTGTGAGTAACTTAGCTA 57.672 37.037 5.99 0.00 41.13 3.32
4891 5213 7.830201 ACTAGTCATAGTGTGAGTAACTTAGCT 59.170 37.037 5.99 0.00 41.13 3.32
4892 5214 7.987649 ACTAGTCATAGTGTGAGTAACTTAGC 58.012 38.462 5.99 0.00 41.13 3.09
4893 5215 9.386010 AGACTAGTCATAGTGTGAGTAACTTAG 57.614 37.037 24.44 0.00 42.46 2.18
4894 5216 9.736414 AAGACTAGTCATAGTGTGAGTAACTTA 57.264 33.333 24.44 0.00 42.46 2.24
4895 5217 8.638629 AAGACTAGTCATAGTGTGAGTAACTT 57.361 34.615 24.44 10.30 42.46 2.66
4896 5218 9.908747 ATAAGACTAGTCATAGTGTGAGTAACT 57.091 33.333 24.44 5.85 42.46 2.24
4934 5256 9.507280 GCACGTACACATTAACTAGTTATAGAA 57.493 33.333 15.92 3.65 32.93 2.10
4935 5257 8.676401 TGCACGTACACATTAACTAGTTATAGA 58.324 33.333 15.92 2.14 32.93 1.98
4936 5258 8.845942 TGCACGTACACATTAACTAGTTATAG 57.154 34.615 15.92 13.24 34.96 1.31
4937 5259 9.806203 ATTGCACGTACACATTAACTAGTTATA 57.194 29.630 15.92 7.84 0.00 0.98
4938 5260 8.600625 CATTGCACGTACACATTAACTAGTTAT 58.399 33.333 15.92 3.75 0.00 1.89
4939 5261 7.412129 GCATTGCACGTACACATTAACTAGTTA 60.412 37.037 11.38 11.38 0.00 2.24
4940 5262 6.619874 GCATTGCACGTACACATTAACTAGTT 60.620 38.462 13.68 13.68 0.00 2.24
4941 5263 5.163893 GCATTGCACGTACACATTAACTAGT 60.164 40.000 3.15 0.00 0.00 2.57
4942 5264 5.163903 TGCATTGCACGTACACATTAACTAG 60.164 40.000 7.38 0.00 31.71 2.57
4943 5265 4.691216 TGCATTGCACGTACACATTAACTA 59.309 37.500 7.38 0.00 31.71 2.24
4944 5266 3.500299 TGCATTGCACGTACACATTAACT 59.500 39.130 7.38 0.00 31.71 2.24
4945 5267 3.816091 TGCATTGCACGTACACATTAAC 58.184 40.909 7.38 0.00 31.71 2.01
4958 5280 6.007936 ACTTCTAAATTAACGTGCATTGCA 57.992 33.333 7.38 7.38 35.60 4.08
4959 5281 9.878599 ATATACTTCTAAATTAACGTGCATTGC 57.121 29.630 0.46 0.46 0.00 3.56
4972 5294 8.721478 CCGCATGCACTTAATATACTTCTAAAT 58.279 33.333 19.57 0.00 0.00 1.40
4973 5295 7.929245 TCCGCATGCACTTAATATACTTCTAAA 59.071 33.333 19.57 0.00 0.00 1.85
4974 5296 7.438564 TCCGCATGCACTTAATATACTTCTAA 58.561 34.615 19.57 0.00 0.00 2.10
4975 5297 6.988522 TCCGCATGCACTTAATATACTTCTA 58.011 36.000 19.57 0.00 0.00 2.10
4976 5298 5.853936 TCCGCATGCACTTAATATACTTCT 58.146 37.500 19.57 0.00 0.00 2.85
4977 5299 6.727824 ATCCGCATGCACTTAATATACTTC 57.272 37.500 19.57 0.00 0.00 3.01
4978 5300 8.792830 AATATCCGCATGCACTTAATATACTT 57.207 30.769 19.57 0.00 0.00 2.24
4979 5301 9.884636 TTAATATCCGCATGCACTTAATATACT 57.115 29.630 19.57 2.37 0.00 2.12
4981 5303 9.884636 ACTTAATATCCGCATGCACTTAATATA 57.115 29.630 19.57 4.53 0.00 0.86
4982 5304 8.792830 ACTTAATATCCGCATGCACTTAATAT 57.207 30.769 19.57 9.48 0.00 1.28
4983 5305 9.366216 CTACTTAATATCCGCATGCACTTAATA 57.634 33.333 19.57 7.60 0.00 0.98
4984 5306 8.094548 TCTACTTAATATCCGCATGCACTTAAT 58.905 33.333 19.57 5.58 0.00 1.40
4985 5307 7.438564 TCTACTTAATATCCGCATGCACTTAA 58.561 34.615 19.57 11.55 0.00 1.85
4986 5308 6.988522 TCTACTTAATATCCGCATGCACTTA 58.011 36.000 19.57 5.72 0.00 2.24
4987 5309 5.853936 TCTACTTAATATCCGCATGCACTT 58.146 37.500 19.57 3.39 0.00 3.16
4988 5310 5.468540 TCTACTTAATATCCGCATGCACT 57.531 39.130 19.57 3.59 0.00 4.40
4989 5311 6.727824 ATTCTACTTAATATCCGCATGCAC 57.272 37.500 19.57 0.00 0.00 4.57
5016 5338 9.445786 GTGCTAATTACATAATAACACGCAAAT 57.554 29.630 0.00 0.00 0.00 2.32
5017 5339 8.670135 AGTGCTAATTACATAATAACACGCAAA 58.330 29.630 0.00 0.00 32.63 3.68
5018 5340 8.203937 AGTGCTAATTACATAATAACACGCAA 57.796 30.769 0.00 0.00 32.63 4.85
5019 5341 7.780008 AGTGCTAATTACATAATAACACGCA 57.220 32.000 0.00 0.00 32.63 5.24
5044 5366 7.647715 GCGTGCAGTTAATTTCATACCAAATAT 59.352 33.333 0.00 0.00 0.00 1.28
5045 5367 6.970043 GCGTGCAGTTAATTTCATACCAAATA 59.030 34.615 0.00 0.00 0.00 1.40
5046 5368 5.804979 GCGTGCAGTTAATTTCATACCAAAT 59.195 36.000 0.00 0.00 0.00 2.32
5047 5369 5.048364 AGCGTGCAGTTAATTTCATACCAAA 60.048 36.000 0.00 0.00 0.00 3.28
5048 5370 4.457603 AGCGTGCAGTTAATTTCATACCAA 59.542 37.500 0.00 0.00 0.00 3.67
5049 5371 4.006989 AGCGTGCAGTTAATTTCATACCA 58.993 39.130 0.00 0.00 0.00 3.25
5050 5372 4.616181 AGCGTGCAGTTAATTTCATACC 57.384 40.909 0.00 0.00 0.00 2.73
5051 5373 6.192137 CGTTTAGCGTGCAGTTAATTTCATAC 59.808 38.462 0.00 0.00 35.54 2.39
5052 5374 6.244999 CGTTTAGCGTGCAGTTAATTTCATA 58.755 36.000 0.00 0.00 35.54 2.15
5053 5375 5.086058 CGTTTAGCGTGCAGTTAATTTCAT 58.914 37.500 0.00 0.00 35.54 2.57
5054 5376 4.459606 CGTTTAGCGTGCAGTTAATTTCA 58.540 39.130 0.00 0.00 35.54 2.69
5069 5391 1.999651 GAGCGCTCGACACGTTTAGC 62.000 60.000 23.61 0.00 0.00 3.09
5070 5392 1.981668 GAGCGCTCGACACGTTTAG 59.018 57.895 23.61 0.00 0.00 1.85
5071 5393 4.141883 GAGCGCTCGACACGTTTA 57.858 55.556 23.61 0.00 0.00 2.01
5081 5403 3.925688 TTGTTTCAATATCGAGCGCTC 57.074 42.857 27.64 27.64 0.00 5.03
5082 5404 4.122776 AGATTGTTTCAATATCGAGCGCT 58.877 39.130 11.27 11.27 0.00 5.92
5083 5405 4.458951 AGATTGTTTCAATATCGAGCGC 57.541 40.909 0.00 0.00 0.00 5.92
5084 5406 5.692204 ACCTAGATTGTTTCAATATCGAGCG 59.308 40.000 0.00 0.00 0.00 5.03
5085 5407 6.129062 CGACCTAGATTGTTTCAATATCGAGC 60.129 42.308 0.00 0.00 0.00 5.03
5086 5408 6.918569 ACGACCTAGATTGTTTCAATATCGAG 59.081 38.462 0.00 0.00 0.00 4.04
5087 5409 6.802608 ACGACCTAGATTGTTTCAATATCGA 58.197 36.000 0.00 0.00 0.00 3.59
5088 5410 7.337718 CAACGACCTAGATTGTTTCAATATCG 58.662 38.462 0.00 0.00 0.00 2.92
5089 5411 7.494625 TCCAACGACCTAGATTGTTTCAATATC 59.505 37.037 0.00 0.00 0.00 1.63
5090 5412 7.335627 TCCAACGACCTAGATTGTTTCAATAT 58.664 34.615 0.00 0.00 0.00 1.28
5091 5413 6.703319 TCCAACGACCTAGATTGTTTCAATA 58.297 36.000 0.00 0.00 0.00 1.90
5092 5414 5.556915 TCCAACGACCTAGATTGTTTCAAT 58.443 37.500 0.00 0.00 0.00 2.57
5093 5415 4.963373 TCCAACGACCTAGATTGTTTCAA 58.037 39.130 0.00 0.00 0.00 2.69
5094 5416 4.610605 TCCAACGACCTAGATTGTTTCA 57.389 40.909 0.00 0.00 0.00 2.69
5095 5417 5.642063 TCAATCCAACGACCTAGATTGTTTC 59.358 40.000 10.41 0.00 43.81 2.78
5096 5418 5.556915 TCAATCCAACGACCTAGATTGTTT 58.443 37.500 10.41 0.00 43.81 2.83
5097 5419 5.160607 TCAATCCAACGACCTAGATTGTT 57.839 39.130 10.41 0.00 43.81 2.83
5098 5420 4.819105 TCAATCCAACGACCTAGATTGT 57.181 40.909 10.41 0.00 43.81 2.71
5099 5421 7.154656 TCATATCAATCCAACGACCTAGATTG 58.845 38.462 5.44 5.44 44.44 2.67
5100 5422 7.303182 TCATATCAATCCAACGACCTAGATT 57.697 36.000 0.00 0.00 0.00 2.40
5101 5423 6.918067 TCATATCAATCCAACGACCTAGAT 57.082 37.500 0.00 0.00 0.00 1.98
5102 5424 6.918067 ATCATATCAATCCAACGACCTAGA 57.082 37.500 0.00 0.00 0.00 2.43
5103 5425 7.657354 TCAAATCATATCAATCCAACGACCTAG 59.343 37.037 0.00 0.00 0.00 3.02
5104 5426 7.505258 TCAAATCATATCAATCCAACGACCTA 58.495 34.615 0.00 0.00 0.00 3.08
5105 5427 6.356556 TCAAATCATATCAATCCAACGACCT 58.643 36.000 0.00 0.00 0.00 3.85
5106 5428 6.618287 TCAAATCATATCAATCCAACGACC 57.382 37.500 0.00 0.00 0.00 4.79
5107 5429 7.080099 CCATCAAATCATATCAATCCAACGAC 58.920 38.462 0.00 0.00 0.00 4.34
5108 5430 6.294120 GCCATCAAATCATATCAATCCAACGA 60.294 38.462 0.00 0.00 0.00 3.85
5109 5431 5.860182 GCCATCAAATCATATCAATCCAACG 59.140 40.000 0.00 0.00 0.00 4.10
5110 5432 6.161381 GGCCATCAAATCATATCAATCCAAC 58.839 40.000 0.00 0.00 0.00 3.77
5111 5433 5.047872 CGGCCATCAAATCATATCAATCCAA 60.048 40.000 2.24 0.00 0.00 3.53
5112 5434 4.460034 CGGCCATCAAATCATATCAATCCA 59.540 41.667 2.24 0.00 0.00 3.41
5113 5435 4.701651 TCGGCCATCAAATCATATCAATCC 59.298 41.667 2.24 0.00 0.00 3.01
5114 5436 5.645067 TCTCGGCCATCAAATCATATCAATC 59.355 40.000 2.24 0.00 0.00 2.67
5115 5437 5.563592 TCTCGGCCATCAAATCATATCAAT 58.436 37.500 2.24 0.00 0.00 2.57
5116 5438 4.971939 TCTCGGCCATCAAATCATATCAA 58.028 39.130 2.24 0.00 0.00 2.57
5117 5439 4.622260 TCTCGGCCATCAAATCATATCA 57.378 40.909 2.24 0.00 0.00 2.15
5118 5440 7.615582 TTAATCTCGGCCATCAAATCATATC 57.384 36.000 2.24 0.00 0.00 1.63
5119 5441 8.585471 AATTAATCTCGGCCATCAAATCATAT 57.415 30.769 2.24 0.00 0.00 1.78
5120 5442 9.513906 TTAATTAATCTCGGCCATCAAATCATA 57.486 29.630 2.24 0.00 0.00 2.15
5121 5443 6.906157 AATTAATCTCGGCCATCAAATCAT 57.094 33.333 2.24 0.00 0.00 2.45
5122 5444 7.815840 TTAATTAATCTCGGCCATCAAATCA 57.184 32.000 2.24 0.00 0.00 2.57
5123 5445 9.346725 GATTTAATTAATCTCGGCCATCAAATC 57.653 33.333 2.24 0.00 39.67 2.17
5138 5460 9.981460 AGACCCAAAGAGACAGATTTAATTAAT 57.019 29.630 0.00 0.00 0.00 1.40
5139 5461 9.807921 AAGACCCAAAGAGACAGATTTAATTAA 57.192 29.630 0.00 0.00 0.00 1.40
5140 5462 9.807921 AAAGACCCAAAGAGACAGATTTAATTA 57.192 29.630 0.00 0.00 0.00 1.40
5141 5463 8.712228 AAAGACCCAAAGAGACAGATTTAATT 57.288 30.769 0.00 0.00 0.00 1.40
5142 5464 8.712228 AAAAGACCCAAAGAGACAGATTTAAT 57.288 30.769 0.00 0.00 0.00 1.40
5143 5465 8.533569 AAAAAGACCCAAAGAGACAGATTTAA 57.466 30.769 0.00 0.00 0.00 1.52
5144 5466 9.807921 ATAAAAAGACCCAAAGAGACAGATTTA 57.192 29.630 0.00 0.00 0.00 1.40
5145 5467 8.712228 ATAAAAAGACCCAAAGAGACAGATTT 57.288 30.769 0.00 0.00 0.00 2.17
5146 5468 9.981460 ATATAAAAAGACCCAAAGAGACAGATT 57.019 29.630 0.00 0.00 0.00 2.40
5147 5469 9.981460 AATATAAAAAGACCCAAAGAGACAGAT 57.019 29.630 0.00 0.00 0.00 2.90
5148 5470 9.231297 CAATATAAAAAGACCCAAAGAGACAGA 57.769 33.333 0.00 0.00 0.00 3.41
5149 5471 9.231297 TCAATATAAAAAGACCCAAAGAGACAG 57.769 33.333 0.00 0.00 0.00 3.51
5150 5472 9.753674 ATCAATATAAAAAGACCCAAAGAGACA 57.246 29.630 0.00 0.00 0.00 3.41
5200 5522 6.942005 TCACAAGGACCTATATGGCATAAATG 59.058 38.462 11.86 5.25 40.22 2.32
5201 5523 6.942576 GTCACAAGGACCTATATGGCATAAAT 59.057 38.462 11.86 0.00 40.83 1.40
5202 5524 6.296026 GTCACAAGGACCTATATGGCATAAA 58.704 40.000 11.86 0.00 40.83 1.40
5203 5525 5.510690 CGTCACAAGGACCTATATGGCATAA 60.511 44.000 11.86 0.62 43.95 1.90
5204 5526 4.021456 CGTCACAAGGACCTATATGGCATA 60.021 45.833 10.07 10.07 43.95 3.14
5205 5527 3.244215 CGTCACAAGGACCTATATGGCAT 60.244 47.826 4.88 4.88 43.95 4.40
5206 5528 2.102420 CGTCACAAGGACCTATATGGCA 59.898 50.000 0.00 0.00 43.95 4.92
5207 5529 2.364324 TCGTCACAAGGACCTATATGGC 59.636 50.000 0.00 0.00 43.95 4.40
5208 5530 3.637229 ACTCGTCACAAGGACCTATATGG 59.363 47.826 0.00 0.00 43.95 2.74
5209 5531 4.920640 ACTCGTCACAAGGACCTATATG 57.079 45.455 0.00 0.00 43.95 1.78
5210 5532 5.187186 ACAAACTCGTCACAAGGACCTATAT 59.813 40.000 0.00 0.00 43.95 0.86
5211 5533 4.525487 ACAAACTCGTCACAAGGACCTATA 59.475 41.667 0.00 0.00 43.95 1.31
5212 5534 3.323979 ACAAACTCGTCACAAGGACCTAT 59.676 43.478 0.00 0.00 43.95 2.57
5213 5535 2.696707 ACAAACTCGTCACAAGGACCTA 59.303 45.455 0.00 0.00 43.95 3.08
5214 5536 1.485066 ACAAACTCGTCACAAGGACCT 59.515 47.619 0.00 0.00 43.95 3.85
5215 5537 1.597663 CACAAACTCGTCACAAGGACC 59.402 52.381 0.00 0.00 43.95 4.46
5216 5538 2.546778 TCACAAACTCGTCACAAGGAC 58.453 47.619 0.00 0.00 43.36 3.85
5217 5539 2.971660 TCACAAACTCGTCACAAGGA 57.028 45.000 0.00 0.00 0.00 3.36
5218 5540 3.130633 TCATCACAAACTCGTCACAAGG 58.869 45.455 0.00 0.00 0.00 3.61
5219 5541 3.804325 ACTCATCACAAACTCGTCACAAG 59.196 43.478 0.00 0.00 0.00 3.16
5220 5542 3.792401 ACTCATCACAAACTCGTCACAA 58.208 40.909 0.00 0.00 0.00 3.33
5221 5543 3.452755 ACTCATCACAAACTCGTCACA 57.547 42.857 0.00 0.00 0.00 3.58
5222 5544 3.059597 CCAACTCATCACAAACTCGTCAC 60.060 47.826 0.00 0.00 0.00 3.67
5223 5545 3.130633 CCAACTCATCACAAACTCGTCA 58.869 45.455 0.00 0.00 0.00 4.35
5224 5546 3.184581 GTCCAACTCATCACAAACTCGTC 59.815 47.826 0.00 0.00 0.00 4.20
5225 5547 3.131396 GTCCAACTCATCACAAACTCGT 58.869 45.455 0.00 0.00 0.00 4.18
5226 5548 3.393800 AGTCCAACTCATCACAAACTCG 58.606 45.455 0.00 0.00 0.00 4.18
5227 5549 4.999751 GAGTCCAACTCATCACAAACTC 57.000 45.455 2.28 0.00 44.45 3.01
5238 5560 6.019559 GCTTTTGTTCAAATTGAGTCCAACTC 60.020 38.462 0.00 0.08 45.26 3.01
5239 5561 5.812127 GCTTTTGTTCAAATTGAGTCCAACT 59.188 36.000 0.00 0.00 34.72 3.16
5240 5562 5.812127 AGCTTTTGTTCAAATTGAGTCCAAC 59.188 36.000 0.00 0.00 34.72 3.77
5241 5563 5.976458 AGCTTTTGTTCAAATTGAGTCCAA 58.024 33.333 0.00 0.00 36.61 3.53
5242 5564 5.596836 AGCTTTTGTTCAAATTGAGTCCA 57.403 34.783 0.00 0.00 0.00 4.02
5243 5565 5.625311 CGTAGCTTTTGTTCAAATTGAGTCC 59.375 40.000 0.00 0.00 0.00 3.85
5244 5566 6.357240 GTCGTAGCTTTTGTTCAAATTGAGTC 59.643 38.462 0.00 0.00 0.00 3.36
5245 5567 6.199393 GTCGTAGCTTTTGTTCAAATTGAGT 58.801 36.000 0.00 0.00 0.00 3.41
5246 5568 5.336990 CGTCGTAGCTTTTGTTCAAATTGAG 59.663 40.000 0.00 0.00 0.00 3.02
5247 5569 5.006844 TCGTCGTAGCTTTTGTTCAAATTGA 59.993 36.000 0.00 0.00 0.00 2.57
5248 5570 5.201910 TCGTCGTAGCTTTTGTTCAAATTG 58.798 37.500 0.00 0.00 0.00 2.32
5249 5571 5.235616 TCTCGTCGTAGCTTTTGTTCAAATT 59.764 36.000 0.00 0.00 0.00 1.82
5250 5572 4.748102 TCTCGTCGTAGCTTTTGTTCAAAT 59.252 37.500 0.00 0.00 0.00 2.32
5251 5573 4.114073 TCTCGTCGTAGCTTTTGTTCAAA 58.886 39.130 0.00 0.00 0.00 2.69
5252 5574 3.708890 TCTCGTCGTAGCTTTTGTTCAA 58.291 40.909 0.00 0.00 0.00 2.69
5253 5575 3.358707 TCTCGTCGTAGCTTTTGTTCA 57.641 42.857 0.00 0.00 0.00 3.18
5254 5576 3.979495 TCTTCTCGTCGTAGCTTTTGTTC 59.021 43.478 0.00 0.00 0.00 3.18
5255 5577 3.973657 TCTTCTCGTCGTAGCTTTTGTT 58.026 40.909 0.00 0.00 0.00 2.83
5256 5578 3.637998 TCTTCTCGTCGTAGCTTTTGT 57.362 42.857 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.