Multiple sequence alignment - TraesCS3A01G129700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G129700 chr3A 100.000 2413 0 0 1 2413 107046024 107043612 0.000000e+00 4457.0
1 TraesCS3A01G129700 chr3A 100.000 144 0 0 2595 2738 107043430 107043287 1.620000e-67 267.0
2 TraesCS3A01G129700 chr3B 89.926 1479 98 20 727 2174 140394837 140393379 0.000000e+00 1858.0
3 TraesCS3A01G129700 chr3D 84.900 1457 137 37 31 1442 90776846 90775428 0.000000e+00 1395.0
4 TraesCS3A01G129700 chr3D 88.785 749 34 14 1461 2174 90775441 90774708 0.000000e+00 872.0
5 TraesCS3A01G129700 chr4D 89.378 386 29 4 999 1381 374605479 374605103 2.470000e-130 475.0
6 TraesCS3A01G129700 chr2A 87.339 387 37 7 999 1382 385466 385089 1.510000e-117 433.0
7 TraesCS3A01G129700 chr2A 84.375 128 18 2 2202 2329 41157182 41157057 1.030000e-24 124.0
8 TraesCS3A01G129700 chr1D 77.684 354 47 24 1333 1682 477428179 477428504 1.290000e-43 187.0
9 TraesCS3A01G129700 chr1B 77.508 329 42 24 1358 1682 665032168 665032468 4.690000e-38 169.0
10 TraesCS3A01G129700 chr1A 89.394 132 13 1 2197 2328 369252223 369252093 6.070000e-37 165.0
11 TraesCS3A01G129700 chr1A 89.256 121 12 1 2208 2328 92617268 92617149 1.700000e-32 150.0
12 TraesCS3A01G129700 chr1A 86.508 126 16 1 2199 2324 62192624 62192500 1.320000e-28 137.0
13 TraesCS3A01G129700 chr1A 94.521 73 3 1 1362 1434 573713910 573713981 8.010000e-21 111.0
14 TraesCS3A01G129700 chr5D 86.331 139 16 3 2194 2330 481640478 481640341 6.110000e-32 148.0
15 TraesCS3A01G129700 chr7D 85.606 132 16 3 2199 2329 598149013 598148884 4.760000e-28 135.0
16 TraesCS3A01G129700 chr5B 85.246 122 16 2 2197 2318 696223654 696223535 1.030000e-24 124.0
17 TraesCS3A01G129700 chr7B 82.090 134 21 3 2196 2328 615324649 615324780 8.010000e-21 111.0
18 TraesCS3A01G129700 chr4B 83.929 112 18 0 2199 2310 608663478 608663367 1.040000e-19 108.0
19 TraesCS3A01G129700 chr6D 100.000 29 0 0 1587 1615 318079480 318079508 1.000000e-03 54.7
20 TraesCS3A01G129700 chr6B 100.000 29 0 0 1587 1615 506382527 506382499 1.000000e-03 54.7
21 TraesCS3A01G129700 chr6A 100.000 29 0 0 1587 1615 455496384 455496412 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G129700 chr3A 107043287 107046024 2737 True 2362.0 4457 100.0000 1 2738 2 chr3A.!!$R1 2737
1 TraesCS3A01G129700 chr3B 140393379 140394837 1458 True 1858.0 1858 89.9260 727 2174 1 chr3B.!!$R1 1447
2 TraesCS3A01G129700 chr3D 90774708 90776846 2138 True 1133.5 1395 86.8425 31 2174 2 chr3D.!!$R1 2143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 763 0.035439 CCTTACACAGGCCGAATGGT 60.035 55.0 0.0 0.0 35.13 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2332 2437 0.109597 CAACGTGCTTGAGGGCATTC 60.11 55.0 0.0 0.0 44.34 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.003939 ACAAAATGAAGAAAAGAAAAAGGCG 57.996 32.000 0.00 0.00 0.00 5.52
57 58 6.037062 ACAAAATGAAGAAAAGAAAAAGGCGG 59.963 34.615 0.00 0.00 0.00 6.13
58 59 4.937201 ATGAAGAAAAGAAAAAGGCGGT 57.063 36.364 0.00 0.00 0.00 5.68
59 60 4.040445 TGAAGAAAAGAAAAAGGCGGTG 57.960 40.909 0.00 0.00 0.00 4.94
60 61 3.697045 TGAAGAAAAGAAAAAGGCGGTGA 59.303 39.130 0.00 0.00 0.00 4.02
61 62 4.158764 TGAAGAAAAGAAAAAGGCGGTGAA 59.841 37.500 0.00 0.00 0.00 3.18
64 65 4.868171 AGAAAAGAAAAAGGCGGTGAAAAC 59.132 37.500 0.00 0.00 0.00 2.43
66 67 2.104170 AGAAAAAGGCGGTGAAAACCA 58.896 42.857 0.00 0.00 0.00 3.67
67 68 2.498078 AGAAAAAGGCGGTGAAAACCAA 59.502 40.909 0.00 0.00 0.00 3.67
68 69 2.595124 AAAAGGCGGTGAAAACCAAG 57.405 45.000 0.00 0.00 0.00 3.61
69 70 1.770294 AAAGGCGGTGAAAACCAAGA 58.230 45.000 0.00 0.00 0.00 3.02
71 72 1.029681 AGGCGGTGAAAACCAAGAAC 58.970 50.000 0.00 0.00 0.00 3.01
72 73 0.317519 GGCGGTGAAAACCAAGAACG 60.318 55.000 0.00 0.00 0.00 3.95
73 74 0.658897 GCGGTGAAAACCAAGAACGA 59.341 50.000 0.00 0.00 0.00 3.85
74 75 1.064357 GCGGTGAAAACCAAGAACGAA 59.936 47.619 0.00 0.00 0.00 3.85
76 77 3.103007 CGGTGAAAACCAAGAACGAAAC 58.897 45.455 0.00 0.00 0.00 2.78
77 78 3.103007 GGTGAAAACCAAGAACGAAACG 58.897 45.455 0.00 0.00 0.00 3.60
82 84 4.531659 AAACCAAGAACGAAACGAAGAG 57.468 40.909 0.00 0.00 0.00 2.85
87 89 4.980434 CCAAGAACGAAACGAAGAGAACTA 59.020 41.667 0.00 0.00 0.00 2.24
146 148 5.687285 CCATGAAAACCGAGAAAGAAACAAG 59.313 40.000 0.00 0.00 0.00 3.16
147 149 6.459573 CCATGAAAACCGAGAAAGAAACAAGA 60.460 38.462 0.00 0.00 0.00 3.02
151 153 8.032451 TGAAAACCGAGAAAGAAACAAGAAAAT 58.968 29.630 0.00 0.00 0.00 1.82
188 191 7.360438 CCTCCTATGAAAACAGAGAAAGAAACG 60.360 40.741 0.00 0.00 0.00 3.60
197 200 9.639601 AAAACAGAGAAAGAAACGAAGAAAAAT 57.360 25.926 0.00 0.00 0.00 1.82
207 210 8.270026 AGAAACGAAGAAAAATCGATGAAAAC 57.730 30.769 0.00 0.00 42.76 2.43
209 212 6.969669 ACGAAGAAAAATCGATGAAAACAC 57.030 33.333 0.00 0.00 42.76 3.32
210 213 6.491394 ACGAAGAAAAATCGATGAAAACACA 58.509 32.000 0.00 0.00 42.76 3.72
261 264 4.100189 GCTGCTCTATTCCTTCAAGTAGGA 59.900 45.833 0.00 0.00 42.56 2.94
266 269 0.963962 TTCCTTCAAGTAGGACGCGT 59.036 50.000 13.85 13.85 43.91 6.01
281 284 4.423732 GGACGCGTCCTACTAATTTAACA 58.576 43.478 43.32 0.00 46.16 2.41
284 287 4.807304 ACGCGTCCTACTAATTTAACATGG 59.193 41.667 5.58 0.00 0.00 3.66
299 302 3.795688 ACATGGACTTGATGGTGACTT 57.204 42.857 0.00 0.00 0.00 3.01
302 305 5.188434 ACATGGACTTGATGGTGACTTATG 58.812 41.667 0.00 0.00 0.00 1.90
309 312 3.384168 TGATGGTGACTTATGGGCTAGT 58.616 45.455 0.00 0.00 0.00 2.57
312 315 3.990369 TGGTGACTTATGGGCTAGTAGT 58.010 45.455 0.00 0.00 0.00 2.73
319 322 5.148502 ACTTATGGGCTAGTAGTGCTACAT 58.851 41.667 11.39 0.00 38.48 2.29
321 324 6.434652 ACTTATGGGCTAGTAGTGCTACATAG 59.565 42.308 11.39 10.24 38.48 2.23
342 346 8.099537 ACATAGCAAATAGTAGATTCTGGGATG 58.900 37.037 0.00 0.00 0.00 3.51
361 366 1.008327 TGGATCCCTACAAGGAGCTCA 59.992 52.381 17.19 0.00 42.19 4.26
362 367 2.334023 GGATCCCTACAAGGAGCTCAT 58.666 52.381 17.19 5.25 42.19 2.90
372 377 7.381323 CCTACAAGGAGCTCATTTTTCAAATT 58.619 34.615 17.19 0.00 37.67 1.82
373 378 7.543520 CCTACAAGGAGCTCATTTTTCAAATTC 59.456 37.037 17.19 0.00 37.67 2.17
374 379 6.819284 ACAAGGAGCTCATTTTTCAAATTCA 58.181 32.000 17.19 0.00 0.00 2.57
376 381 7.769970 ACAAGGAGCTCATTTTTCAAATTCAAA 59.230 29.630 17.19 0.00 0.00 2.69
379 384 9.346005 AGGAGCTCATTTTTCAAATTCAAATTT 57.654 25.926 17.19 0.00 39.07 1.82
388 393 6.689178 TTCAAATTCAAATTTCTACAGCGC 57.311 33.333 0.00 0.00 36.52 5.92
389 394 5.767269 TCAAATTCAAATTTCTACAGCGCA 58.233 33.333 11.47 0.00 36.52 6.09
390 395 6.212235 TCAAATTCAAATTTCTACAGCGCAA 58.788 32.000 11.47 0.00 36.52 4.85
391 396 6.699204 TCAAATTCAAATTTCTACAGCGCAAA 59.301 30.769 11.47 0.18 36.52 3.68
419 424 8.575649 AATTTCCGAATTTATTAGTGGACACT 57.424 30.769 10.15 10.15 37.53 3.55
422 427 6.884832 TCCGAATTTATTAGTGGACACTCAT 58.115 36.000 8.44 6.32 42.54 2.90
425 430 7.709182 CCGAATTTATTAGTGGACACTCATACA 59.291 37.037 8.44 1.96 42.54 2.29
434 439 6.806751 AGTGGACACTCATACACATGTATAC 58.193 40.000 0.00 0.00 36.92 1.47
437 442 8.577296 GTGGACACTCATACACATGTATACTAT 58.423 37.037 0.00 0.00 39.06 2.12
458 463 8.836268 ACTATATATGTAAAAATTTCGCCGGA 57.164 30.769 5.05 0.00 0.00 5.14
459 464 9.444600 ACTATATATGTAAAAATTTCGCCGGAT 57.555 29.630 5.05 0.00 0.00 4.18
471 478 4.330944 TTCGCCGGATTATACTTCACAT 57.669 40.909 5.05 0.00 0.00 3.21
473 480 3.069016 TCGCCGGATTATACTTCACATGT 59.931 43.478 5.05 0.00 0.00 3.21
475 482 3.498397 GCCGGATTATACTTCACATGTGG 59.502 47.826 25.16 12.86 0.00 4.17
476 483 3.498397 CCGGATTATACTTCACATGTGGC 59.502 47.826 25.16 4.48 0.00 5.01
482 489 1.795768 ACTTCACATGTGGCGTACAG 58.204 50.000 25.16 13.40 43.80 2.74
537 544 6.803154 TTTTTATTTTTGTTATTGGGCCGG 57.197 33.333 0.00 0.00 0.00 6.13
538 545 5.740290 TTTATTTTTGTTATTGGGCCGGA 57.260 34.783 5.05 0.00 0.00 5.14
539 546 5.941555 TTATTTTTGTTATTGGGCCGGAT 57.058 34.783 5.05 0.00 0.00 4.18
540 547 4.835284 ATTTTTGTTATTGGGCCGGATT 57.165 36.364 5.05 0.00 0.00 3.01
541 548 5.941555 ATTTTTGTTATTGGGCCGGATTA 57.058 34.783 5.05 0.00 0.00 1.75
542 549 5.941555 TTTTTGTTATTGGGCCGGATTAT 57.058 34.783 5.05 0.00 0.00 1.28
543 550 5.941555 TTTTGTTATTGGGCCGGATTATT 57.058 34.783 5.05 0.00 0.00 1.40
544 551 4.927978 TTGTTATTGGGCCGGATTATTG 57.072 40.909 5.05 0.00 0.00 1.90
545 552 3.904717 TGTTATTGGGCCGGATTATTGT 58.095 40.909 5.05 0.00 0.00 2.71
548 555 3.817709 ATTGGGCCGGATTATTGTTTG 57.182 42.857 5.05 0.00 0.00 2.93
573 580 6.701145 TTTTACAGCCTACAAATCACAACA 57.299 33.333 0.00 0.00 0.00 3.33
576 583 7.987750 TTACAGCCTACAAATCACAACATTA 57.012 32.000 0.00 0.00 0.00 1.90
584 591 9.284594 CCTACAAATCACAACATTATTAAACGG 57.715 33.333 0.00 0.00 0.00 4.44
625 634 7.833682 TGCGGAATACATATATTTTCCATGGAT 59.166 33.333 17.06 2.96 37.99 3.41
626 635 8.686334 GCGGAATACATATATTTTCCATGGATT 58.314 33.333 17.06 6.43 37.99 3.01
691 704 3.322211 TTTTCAAATACCGAGCTCCGA 57.678 42.857 8.47 0.00 41.76 4.55
692 705 3.322211 TTTCAAATACCGAGCTCCGAA 57.678 42.857 8.47 0.00 41.76 4.30
710 723 0.606673 AAGAGCTCGGCCTCCAAAAC 60.607 55.000 8.37 0.00 32.17 2.43
714 727 0.889186 GCTCGGCCTCCAAAACTTCA 60.889 55.000 0.00 0.00 0.00 3.02
715 728 0.875059 CTCGGCCTCCAAAACTTCAC 59.125 55.000 0.00 0.00 0.00 3.18
716 729 0.536460 TCGGCCTCCAAAACTTCACC 60.536 55.000 0.00 0.00 0.00 4.02
717 730 1.524008 CGGCCTCCAAAACTTCACCC 61.524 60.000 0.00 0.00 0.00 4.61
718 731 1.185618 GGCCTCCAAAACTTCACCCC 61.186 60.000 0.00 0.00 0.00 4.95
719 732 1.185618 GCCTCCAAAACTTCACCCCC 61.186 60.000 0.00 0.00 0.00 5.40
720 733 0.187361 CCTCCAAAACTTCACCCCCA 59.813 55.000 0.00 0.00 0.00 4.96
721 734 1.203174 CCTCCAAAACTTCACCCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
722 735 2.042433 CCTCCAAAACTTCACCCCCATA 59.958 50.000 0.00 0.00 0.00 2.74
723 736 3.501385 CCTCCAAAACTTCACCCCCATAA 60.501 47.826 0.00 0.00 0.00 1.90
724 737 4.156477 CTCCAAAACTTCACCCCCATAAA 58.844 43.478 0.00 0.00 0.00 1.40
725 738 4.757692 TCCAAAACTTCACCCCCATAAAT 58.242 39.130 0.00 0.00 0.00 1.40
749 762 2.780595 CCTTACACAGGCCGAATGG 58.219 57.895 0.00 0.00 35.13 3.16
750 763 0.035439 CCTTACACAGGCCGAATGGT 60.035 55.000 0.00 0.00 35.13 3.55
777 790 3.934457 TCACTCACAGCGTGAATCTTA 57.066 42.857 11.49 0.00 42.26 2.10
818 833 0.690762 TTGGCGCTCCTACCTCTTTT 59.309 50.000 7.64 0.00 0.00 2.27
819 834 0.690762 TGGCGCTCCTACCTCTTTTT 59.309 50.000 7.64 0.00 0.00 1.94
855 870 4.079615 ACTCTCCTACTCCTACCTCCTTTC 60.080 50.000 0.00 0.00 0.00 2.62
856 871 3.204831 TCTCCTACTCCTACCTCCTTTCC 59.795 52.174 0.00 0.00 0.00 3.13
857 872 3.205733 CTCCTACTCCTACCTCCTTTCCT 59.794 52.174 0.00 0.00 0.00 3.36
858 873 3.601537 TCCTACTCCTACCTCCTTTCCTT 59.398 47.826 0.00 0.00 0.00 3.36
859 874 4.046876 TCCTACTCCTACCTCCTTTCCTTT 59.953 45.833 0.00 0.00 0.00 3.11
869 884 5.756918 ACCTCCTTTCCTTTTTAGATAGCC 58.243 41.667 0.00 0.00 0.00 3.93
978 998 3.299190 CTCGATCCCTCCGCCTCC 61.299 72.222 0.00 0.00 0.00 4.30
983 1027 2.956077 GATCCCTCCGCCTCCCTCTT 62.956 65.000 0.00 0.00 0.00 2.85
991 1035 1.627019 GCCTCCCTCTTCCTCCCTA 59.373 63.158 0.00 0.00 0.00 3.53
997 1041 1.043673 CCTCTTCCTCCCTACACCGG 61.044 65.000 0.00 0.00 0.00 5.28
1550 1603 4.246206 CATCGCCGACTCGCCGTA 62.246 66.667 1.40 0.00 0.00 4.02
1599 1652 1.673665 GCAGCAGGTGGACAGGAAG 60.674 63.158 0.86 0.00 0.00 3.46
1751 1804 2.731976 CCGTTTAGTGAAGTGTCTCAGC 59.268 50.000 0.00 0.00 0.00 4.26
1833 1893 2.647529 CATGCATGCATCTGTTGTGT 57.352 45.000 30.07 4.31 33.90 3.72
1839 1899 3.551454 GCATGCATCTGTTGTGTTTGACT 60.551 43.478 14.21 0.00 0.00 3.41
1874 1941 0.371301 CAGTCCATGTTGATGTCGCG 59.629 55.000 0.00 0.00 0.00 5.87
1891 1958 2.158841 TCGCGTTTAATCAGTTTGCTCC 59.841 45.455 5.77 0.00 0.00 4.70
1937 2027 2.479837 TGCTTAAACAGTCCTCGTGTG 58.520 47.619 0.00 0.00 0.00 3.82
1939 2029 3.068448 TGCTTAAACAGTCCTCGTGTGTA 59.932 43.478 0.00 0.00 0.00 2.90
1941 2031 4.795308 GCTTAAACAGTCCTCGTGTGTACT 60.795 45.833 0.00 0.00 0.00 2.73
2174 2279 5.895636 TGGTACACCAATATTTGCAGAAG 57.104 39.130 0.00 0.00 44.35 2.85
2175 2280 5.321102 TGGTACACCAATATTTGCAGAAGT 58.679 37.500 0.00 0.00 44.35 3.01
2176 2281 6.477253 TGGTACACCAATATTTGCAGAAGTA 58.523 36.000 0.00 0.00 44.35 2.24
2177 2282 6.373216 TGGTACACCAATATTTGCAGAAGTAC 59.627 38.462 0.00 0.00 44.35 2.73
2178 2283 6.373216 GGTACACCAATATTTGCAGAAGTACA 59.627 38.462 0.00 0.00 35.64 2.90
2179 2284 6.254281 ACACCAATATTTGCAGAAGTACAC 57.746 37.500 0.00 0.00 0.00 2.90
2180 2285 5.183140 ACACCAATATTTGCAGAAGTACACC 59.817 40.000 0.00 0.00 0.00 4.16
2181 2286 5.182950 CACCAATATTTGCAGAAGTACACCA 59.817 40.000 0.00 0.00 0.00 4.17
2182 2287 5.772672 ACCAATATTTGCAGAAGTACACCAA 59.227 36.000 0.00 0.00 0.00 3.67
2183 2288 6.437162 ACCAATATTTGCAGAAGTACACCAAT 59.563 34.615 0.00 0.00 0.00 3.16
2184 2289 7.613801 ACCAATATTTGCAGAAGTACACCAATA 59.386 33.333 0.00 0.00 0.00 1.90
2185 2290 8.632679 CCAATATTTGCAGAAGTACACCAATAT 58.367 33.333 0.00 0.00 0.00 1.28
2189 2294 6.892658 TTGCAGAAGTACACCAATATTTGT 57.107 33.333 0.00 0.00 0.00 2.83
2190 2295 6.892658 TGCAGAAGTACACCAATATTTGTT 57.107 33.333 0.00 0.00 0.00 2.83
2191 2296 6.676950 TGCAGAAGTACACCAATATTTGTTG 58.323 36.000 0.00 0.00 0.00 3.33
2204 2309 8.115490 CCAATATTTGTTGGTCTTCTTCTTCT 57.885 34.615 0.00 0.00 42.94 2.85
2205 2310 8.579863 CCAATATTTGTTGGTCTTCTTCTTCTT 58.420 33.333 0.00 0.00 42.94 2.52
2206 2311 9.617975 CAATATTTGTTGGTCTTCTTCTTCTTC 57.382 33.333 0.00 0.00 0.00 2.87
2207 2312 9.579932 AATATTTGTTGGTCTTCTTCTTCTTCT 57.420 29.630 0.00 0.00 0.00 2.85
2208 2313 7.888250 ATTTGTTGGTCTTCTTCTTCTTCTT 57.112 32.000 0.00 0.00 0.00 2.52
2209 2314 6.927294 TTGTTGGTCTTCTTCTTCTTCTTC 57.073 37.500 0.00 0.00 0.00 2.87
2210 2315 6.240549 TGTTGGTCTTCTTCTTCTTCTTCT 57.759 37.500 0.00 0.00 0.00 2.85
2211 2316 6.653989 TGTTGGTCTTCTTCTTCTTCTTCTT 58.346 36.000 0.00 0.00 0.00 2.52
2212 2317 6.763610 TGTTGGTCTTCTTCTTCTTCTTCTTC 59.236 38.462 0.00 0.00 0.00 2.87
2213 2318 6.739331 TGGTCTTCTTCTTCTTCTTCTTCT 57.261 37.500 0.00 0.00 0.00 2.85
2214 2319 7.130681 TGGTCTTCTTCTTCTTCTTCTTCTT 57.869 36.000 0.00 0.00 0.00 2.52
2215 2320 7.213678 TGGTCTTCTTCTTCTTCTTCTTCTTC 58.786 38.462 0.00 0.00 0.00 2.87
2216 2321 7.070571 TGGTCTTCTTCTTCTTCTTCTTCTTCT 59.929 37.037 0.00 0.00 0.00 2.85
2217 2322 7.931407 GGTCTTCTTCTTCTTCTTCTTCTTCTT 59.069 37.037 0.00 0.00 0.00 2.52
2218 2323 9.974980 GTCTTCTTCTTCTTCTTCTTCTTCTTA 57.025 33.333 0.00 0.00 0.00 2.10
2229 2334 9.890352 CTTCTTCTTCTTCTTATTGTCTTTTGG 57.110 33.333 0.00 0.00 0.00 3.28
2230 2335 8.980481 TCTTCTTCTTCTTATTGTCTTTTGGT 57.020 30.769 0.00 0.00 0.00 3.67
2231 2336 9.408648 TCTTCTTCTTCTTATTGTCTTTTGGTT 57.591 29.630 0.00 0.00 0.00 3.67
2232 2337 9.455847 CTTCTTCTTCTTATTGTCTTTTGGTTG 57.544 33.333 0.00 0.00 0.00 3.77
2233 2338 8.519799 TCTTCTTCTTATTGTCTTTTGGTTGT 57.480 30.769 0.00 0.00 0.00 3.32
2234 2339 8.405531 TCTTCTTCTTATTGTCTTTTGGTTGTG 58.594 33.333 0.00 0.00 0.00 3.33
2235 2340 7.639113 TCTTCTTATTGTCTTTTGGTTGTGT 57.361 32.000 0.00 0.00 0.00 3.72
2236 2341 7.479980 TCTTCTTATTGTCTTTTGGTTGTGTG 58.520 34.615 0.00 0.00 0.00 3.82
2237 2342 5.587289 TCTTATTGTCTTTTGGTTGTGTGC 58.413 37.500 0.00 0.00 0.00 4.57
2238 2343 3.883830 ATTGTCTTTTGGTTGTGTGCA 57.116 38.095 0.00 0.00 0.00 4.57
2239 2344 3.883830 TTGTCTTTTGGTTGTGTGCAT 57.116 38.095 0.00 0.00 0.00 3.96
2240 2345 3.435105 TGTCTTTTGGTTGTGTGCATC 57.565 42.857 0.00 0.00 0.00 3.91
2241 2346 2.100584 TGTCTTTTGGTTGTGTGCATCC 59.899 45.455 0.00 0.00 35.54 3.51
2242 2347 2.100584 GTCTTTTGGTTGTGTGCATCCA 59.899 45.455 0.00 0.00 41.34 3.41
2243 2348 2.964464 TCTTTTGGTTGTGTGCATCCAT 59.036 40.909 0.00 0.00 42.24 3.41
2244 2349 4.022416 GTCTTTTGGTTGTGTGCATCCATA 60.022 41.667 0.00 0.00 42.24 2.74
2245 2350 4.586421 TCTTTTGGTTGTGTGCATCCATAA 59.414 37.500 0.00 0.00 42.24 1.90
2246 2351 5.245751 TCTTTTGGTTGTGTGCATCCATAAT 59.754 36.000 0.00 0.00 42.24 1.28
2247 2352 4.453177 TTGGTTGTGTGCATCCATAATG 57.547 40.909 0.00 0.00 42.24 1.90
2248 2353 3.429492 TGGTTGTGTGCATCCATAATGT 58.571 40.909 0.00 0.00 38.99 2.71
2249 2354 3.443329 TGGTTGTGTGCATCCATAATGTC 59.557 43.478 0.00 0.00 38.99 3.06
2250 2355 3.696051 GGTTGTGTGCATCCATAATGTCT 59.304 43.478 0.00 0.00 37.71 3.41
2251 2356 4.158394 GGTTGTGTGCATCCATAATGTCTT 59.842 41.667 0.00 0.00 37.71 3.01
2252 2357 5.336690 GGTTGTGTGCATCCATAATGTCTTT 60.337 40.000 0.00 0.00 37.71 2.52
2253 2358 6.127758 GGTTGTGTGCATCCATAATGTCTTTA 60.128 38.462 0.00 0.00 37.71 1.85
2254 2359 6.682423 TGTGTGCATCCATAATGTCTTTAG 57.318 37.500 0.00 0.00 37.71 1.85
2255 2360 5.589855 TGTGTGCATCCATAATGTCTTTAGG 59.410 40.000 0.00 0.00 37.71 2.69
2256 2361 5.822519 GTGTGCATCCATAATGTCTTTAGGA 59.177 40.000 0.00 0.00 37.71 2.94
2257 2362 5.822519 TGTGCATCCATAATGTCTTTAGGAC 59.177 40.000 0.00 0.00 44.70 3.85
2270 2375 4.622740 GTCTTTAGGACATTGCATTGTTGC 59.377 41.667 14.95 4.12 45.28 4.17
2283 2388 4.761235 CATTGTTGCAGAGACTTGATGT 57.239 40.909 0.00 0.00 0.00 3.06
2284 2389 5.868043 CATTGTTGCAGAGACTTGATGTA 57.132 39.130 0.00 0.00 0.00 2.29
2285 2390 6.245115 CATTGTTGCAGAGACTTGATGTAA 57.755 37.500 0.00 0.00 0.00 2.41
2286 2391 6.849502 CATTGTTGCAGAGACTTGATGTAAT 58.150 36.000 0.00 0.00 0.00 1.89
2287 2392 6.882610 TTGTTGCAGAGACTTGATGTAATT 57.117 33.333 0.00 0.00 0.00 1.40
2288 2393 6.245115 TGTTGCAGAGACTTGATGTAATTG 57.755 37.500 0.00 0.00 0.00 2.32
2289 2394 5.181811 TGTTGCAGAGACTTGATGTAATTGG 59.818 40.000 0.00 0.00 0.00 3.16
2290 2395 4.910195 TGCAGAGACTTGATGTAATTGGT 58.090 39.130 0.00 0.00 0.00 3.67
2291 2396 6.048732 TGCAGAGACTTGATGTAATTGGTA 57.951 37.500 0.00 0.00 0.00 3.25
2292 2397 6.653020 TGCAGAGACTTGATGTAATTGGTAT 58.347 36.000 0.00 0.00 0.00 2.73
2293 2398 6.763135 TGCAGAGACTTGATGTAATTGGTATC 59.237 38.462 0.00 0.00 0.00 2.24
2294 2399 6.989169 GCAGAGACTTGATGTAATTGGTATCT 59.011 38.462 0.00 0.00 0.00 1.98
2295 2400 7.497249 GCAGAGACTTGATGTAATTGGTATCTT 59.503 37.037 0.00 0.00 0.00 2.40
2296 2401 9.388506 CAGAGACTTGATGTAATTGGTATCTTT 57.611 33.333 0.00 0.00 0.00 2.52
2334 2439 9.757227 ATATTTCCTTTTGTCGAAAAATGTGAA 57.243 25.926 0.61 7.46 32.08 3.18
2335 2440 8.661352 ATTTCCTTTTGTCGAAAAATGTGAAT 57.339 26.923 0.61 4.42 32.08 2.57
2336 2441 7.462109 TTCCTTTTGTCGAAAAATGTGAATG 57.538 32.000 0.61 0.00 30.58 2.67
2337 2442 5.461737 TCCTTTTGTCGAAAAATGTGAATGC 59.538 36.000 0.61 0.00 30.58 3.56
2338 2443 5.333263 CCTTTTGTCGAAAAATGTGAATGCC 60.333 40.000 0.61 0.00 30.58 4.40
2339 2444 3.296322 TGTCGAAAAATGTGAATGCCC 57.704 42.857 0.00 0.00 0.00 5.36
2340 2445 2.890311 TGTCGAAAAATGTGAATGCCCT 59.110 40.909 0.00 0.00 0.00 5.19
2341 2446 3.057596 TGTCGAAAAATGTGAATGCCCTC 60.058 43.478 0.00 0.00 0.00 4.30
2342 2447 3.057596 GTCGAAAAATGTGAATGCCCTCA 60.058 43.478 0.00 0.00 0.00 3.86
2343 2448 3.571828 TCGAAAAATGTGAATGCCCTCAA 59.428 39.130 0.00 0.00 0.00 3.02
2344 2449 3.922240 CGAAAAATGTGAATGCCCTCAAG 59.078 43.478 0.00 0.00 0.00 3.02
2345 2450 3.323751 AAAATGTGAATGCCCTCAAGC 57.676 42.857 0.00 0.00 0.00 4.01
2352 2457 2.594303 TGCCCTCAAGCACGTTGG 60.594 61.111 0.00 0.00 38.00 3.77
2353 2458 2.281484 GCCCTCAAGCACGTTGGA 60.281 61.111 0.00 0.00 36.71 3.53
2354 2459 1.675641 GCCCTCAAGCACGTTGGAT 60.676 57.895 0.00 0.00 36.71 3.41
2355 2460 1.648467 GCCCTCAAGCACGTTGGATC 61.648 60.000 0.00 0.00 36.71 3.36
2356 2461 1.026718 CCCTCAAGCACGTTGGATCC 61.027 60.000 4.20 4.20 36.71 3.36
2357 2462 1.026718 CCTCAAGCACGTTGGATCCC 61.027 60.000 9.90 0.00 36.71 3.85
2358 2463 1.361668 CTCAAGCACGTTGGATCCCG 61.362 60.000 9.90 9.19 36.71 5.14
2359 2464 1.671054 CAAGCACGTTGGATCCCGT 60.671 57.895 9.90 9.91 37.90 5.28
2362 2467 2.358125 CACGTTGGATCCCGTGCA 60.358 61.111 24.39 0.00 46.45 4.57
2363 2468 1.745115 CACGTTGGATCCCGTGCAT 60.745 57.895 24.39 0.00 46.45 3.96
2364 2469 1.745115 ACGTTGGATCCCGTGCATG 60.745 57.895 14.31 0.00 35.69 4.06
2365 2470 1.449423 CGTTGGATCCCGTGCATGA 60.449 57.895 9.90 0.00 0.00 3.07
2366 2471 1.024046 CGTTGGATCCCGTGCATGAA 61.024 55.000 9.90 0.00 0.00 2.57
2367 2472 0.451783 GTTGGATCCCGTGCATGAAC 59.548 55.000 9.90 0.00 0.00 3.18
2368 2473 0.679640 TTGGATCCCGTGCATGAACC 60.680 55.000 9.90 5.41 0.00 3.62
2369 2474 1.224592 GGATCCCGTGCATGAACCT 59.775 57.895 7.72 0.00 0.00 3.50
2370 2475 0.468226 GGATCCCGTGCATGAACCTA 59.532 55.000 7.72 0.00 0.00 3.08
2371 2476 1.072331 GGATCCCGTGCATGAACCTAT 59.928 52.381 7.72 0.00 0.00 2.57
2372 2477 2.146342 GATCCCGTGCATGAACCTATG 58.854 52.381 7.72 0.00 0.00 2.23
2381 2486 3.391506 CATGAACCTATGCTGGATCGA 57.608 47.619 0.00 0.00 32.39 3.59
2382 2487 3.935315 CATGAACCTATGCTGGATCGAT 58.065 45.455 0.00 0.00 32.39 3.59
2383 2488 3.391506 TGAACCTATGCTGGATCGATG 57.608 47.619 0.54 0.00 32.39 3.84
2384 2489 2.700371 TGAACCTATGCTGGATCGATGT 59.300 45.455 0.54 0.00 32.39 3.06
2385 2490 3.243873 TGAACCTATGCTGGATCGATGTC 60.244 47.826 0.54 0.00 32.39 3.06
2386 2491 1.270826 ACCTATGCTGGATCGATGTCG 59.729 52.381 0.54 0.00 41.45 4.35
2387 2492 1.403382 CCTATGCTGGATCGATGTCGG 60.403 57.143 0.54 0.85 40.29 4.79
2388 2493 1.541588 CTATGCTGGATCGATGTCGGA 59.458 52.381 0.54 0.00 40.29 4.55
2389 2494 0.972134 ATGCTGGATCGATGTCGGAT 59.028 50.000 0.54 0.00 40.29 4.18
2390 2495 1.616159 TGCTGGATCGATGTCGGATA 58.384 50.000 0.54 0.00 40.29 2.59
2391 2496 1.960689 TGCTGGATCGATGTCGGATAA 59.039 47.619 0.54 0.00 40.29 1.75
2392 2497 2.288213 TGCTGGATCGATGTCGGATAAC 60.288 50.000 0.54 0.00 40.29 1.89
2393 2498 2.029828 GCTGGATCGATGTCGGATAACT 60.030 50.000 0.54 0.00 40.29 2.24
2394 2499 3.553096 GCTGGATCGATGTCGGATAACTT 60.553 47.826 0.54 0.00 40.29 2.66
2395 2500 4.621991 CTGGATCGATGTCGGATAACTTT 58.378 43.478 0.54 0.00 40.29 2.66
2396 2501 4.368315 TGGATCGATGTCGGATAACTTTG 58.632 43.478 0.54 0.00 40.29 2.77
2397 2502 3.741344 GGATCGATGTCGGATAACTTTGG 59.259 47.826 0.54 0.00 40.29 3.28
2398 2503 4.500887 GGATCGATGTCGGATAACTTTGGA 60.501 45.833 0.54 0.00 40.29 3.53
2399 2504 4.665833 TCGATGTCGGATAACTTTGGAT 57.334 40.909 2.25 0.00 40.29 3.41
2400 2505 4.617959 TCGATGTCGGATAACTTTGGATC 58.382 43.478 2.25 0.00 40.29 3.36
2401 2506 3.425525 CGATGTCGGATAACTTTGGATCG 59.574 47.826 0.00 0.00 35.37 3.69
2402 2507 4.617959 GATGTCGGATAACTTTGGATCGA 58.382 43.478 0.00 0.00 0.00 3.59
2403 2508 4.665833 TGTCGGATAACTTTGGATCGAT 57.334 40.909 0.00 0.00 0.00 3.59
2404 2509 4.368315 TGTCGGATAACTTTGGATCGATG 58.632 43.478 0.54 0.00 0.00 3.84
2405 2510 4.142026 TGTCGGATAACTTTGGATCGATGT 60.142 41.667 0.54 0.00 0.00 3.06
2406 2511 4.444720 GTCGGATAACTTTGGATCGATGTC 59.555 45.833 0.54 0.00 0.00 3.06
2407 2512 3.425525 CGGATAACTTTGGATCGATGTCG 59.574 47.826 0.54 0.00 41.45 4.35
2408 2513 3.741344 GGATAACTTTGGATCGATGTCGG 59.259 47.826 0.54 0.00 40.29 4.79
2409 2514 2.024176 AACTTTGGATCGATGTCGGG 57.976 50.000 0.54 0.00 40.29 5.14
2410 2515 0.902531 ACTTTGGATCGATGTCGGGT 59.097 50.000 0.54 0.00 40.29 5.28
2411 2516 1.134788 ACTTTGGATCGATGTCGGGTC 60.135 52.381 0.54 1.99 40.29 4.46
2412 2517 0.899019 TTTGGATCGATGTCGGGTCA 59.101 50.000 0.54 0.00 40.29 4.02
2613 2718 1.539157 GGGAAGGAGAGGTTTTGCTG 58.461 55.000 0.00 0.00 0.00 4.41
2614 2719 1.539157 GGAAGGAGAGGTTTTGCTGG 58.461 55.000 0.00 0.00 0.00 4.85
2615 2720 1.202940 GGAAGGAGAGGTTTTGCTGGT 60.203 52.381 0.00 0.00 0.00 4.00
2616 2721 2.587522 GAAGGAGAGGTTTTGCTGGTT 58.412 47.619 0.00 0.00 0.00 3.67
2617 2722 3.497942 GGAAGGAGAGGTTTTGCTGGTTA 60.498 47.826 0.00 0.00 0.00 2.85
2618 2723 3.141767 AGGAGAGGTTTTGCTGGTTAC 57.858 47.619 0.00 0.00 0.00 2.50
2619 2724 2.441750 AGGAGAGGTTTTGCTGGTTACA 59.558 45.455 0.00 0.00 0.00 2.41
2620 2725 2.552743 GGAGAGGTTTTGCTGGTTACAC 59.447 50.000 0.00 0.00 0.00 2.90
2621 2726 2.552743 GAGAGGTTTTGCTGGTTACACC 59.447 50.000 0.00 0.00 39.22 4.16
2638 2743 7.506328 GTTACACCAACCAAGAACTAGAATT 57.494 36.000 0.00 0.00 0.00 2.17
2639 2744 8.611654 GTTACACCAACCAAGAACTAGAATTA 57.388 34.615 0.00 0.00 0.00 1.40
2640 2745 8.718734 GTTACACCAACCAAGAACTAGAATTAG 58.281 37.037 0.00 0.00 0.00 1.73
2641 2746 6.238648 ACACCAACCAAGAACTAGAATTAGG 58.761 40.000 0.00 0.00 0.00 2.69
2642 2747 6.043938 ACACCAACCAAGAACTAGAATTAGGA 59.956 38.462 0.00 0.00 0.00 2.94
2643 2748 6.940298 CACCAACCAAGAACTAGAATTAGGAA 59.060 38.462 0.00 0.00 0.00 3.36
2644 2749 7.447238 CACCAACCAAGAACTAGAATTAGGAAA 59.553 37.037 0.00 0.00 0.00 3.13
2645 2750 7.447545 ACCAACCAAGAACTAGAATTAGGAAAC 59.552 37.037 0.00 0.00 0.00 2.78
2646 2751 7.447238 CCAACCAAGAACTAGAATTAGGAAACA 59.553 37.037 0.00 0.00 0.00 2.83
2647 2752 9.014297 CAACCAAGAACTAGAATTAGGAAACAT 57.986 33.333 0.00 0.00 0.00 2.71
2649 2754 9.668497 ACCAAGAACTAGAATTAGGAAACATAC 57.332 33.333 0.00 0.00 0.00 2.39
2650 2755 9.892130 CCAAGAACTAGAATTAGGAAACATACT 57.108 33.333 0.00 0.00 0.00 2.12
2659 2764 8.603304 AGAATTAGGAAACATACTAACCTGTGT 58.397 33.333 0.00 0.00 32.52 3.72
2660 2765 9.227777 GAATTAGGAAACATACTAACCTGTGTT 57.772 33.333 0.00 0.00 36.43 3.32
2661 2766 7.972832 TTAGGAAACATACTAACCTGTGTTG 57.027 36.000 0.00 0.00 35.20 3.33
2662 2767 4.760204 AGGAAACATACTAACCTGTGTTGC 59.240 41.667 0.00 0.00 35.20 4.17
2663 2768 4.760204 GGAAACATACTAACCTGTGTTGCT 59.240 41.667 0.00 0.00 35.20 3.91
2664 2769 5.106673 GGAAACATACTAACCTGTGTTGCTC 60.107 44.000 0.00 0.00 35.20 4.26
2665 2770 3.939066 ACATACTAACCTGTGTTGCTCC 58.061 45.455 0.00 0.00 35.87 4.70
2666 2771 3.326588 ACATACTAACCTGTGTTGCTCCA 59.673 43.478 0.00 0.00 35.87 3.86
2667 2772 4.019321 ACATACTAACCTGTGTTGCTCCAT 60.019 41.667 0.00 0.00 35.87 3.41
2668 2773 5.188948 ACATACTAACCTGTGTTGCTCCATA 59.811 40.000 0.00 0.00 35.87 2.74
2669 2774 3.939066 ACTAACCTGTGTTGCTCCATAC 58.061 45.455 0.00 0.00 35.87 2.39
2670 2775 2.949177 AACCTGTGTTGCTCCATACA 57.051 45.000 0.00 0.00 32.13 2.29
2671 2776 2.185004 ACCTGTGTTGCTCCATACAC 57.815 50.000 0.00 0.00 43.76 2.90
2672 2777 1.699634 ACCTGTGTTGCTCCATACACT 59.300 47.619 0.00 0.00 43.82 3.55
2673 2778 2.289694 ACCTGTGTTGCTCCATACACTC 60.290 50.000 0.00 0.00 43.82 3.51
2674 2779 1.995484 CTGTGTTGCTCCATACACTCG 59.005 52.381 0.00 0.00 43.82 4.18
2675 2780 1.337728 TGTGTTGCTCCATACACTCGG 60.338 52.381 0.00 0.00 43.82 4.63
2676 2781 1.067142 GTGTTGCTCCATACACTCGGA 60.067 52.381 0.00 0.00 41.05 4.55
2685 2790 4.543689 TCCATACACTCGGAGATAAAGGT 58.456 43.478 12.86 2.80 33.89 3.50
2686 2791 4.341235 TCCATACACTCGGAGATAAAGGTG 59.659 45.833 12.86 0.75 33.89 4.00
2687 2792 4.341235 CCATACACTCGGAGATAAAGGTGA 59.659 45.833 12.86 0.00 33.89 4.02
2688 2793 5.011125 CCATACACTCGGAGATAAAGGTGAT 59.989 44.000 12.86 0.00 33.89 3.06
2689 2794 4.392921 ACACTCGGAGATAAAGGTGATG 57.607 45.455 12.86 0.00 33.89 3.07
2690 2795 3.133003 ACACTCGGAGATAAAGGTGATGG 59.867 47.826 12.86 0.00 33.89 3.51
2691 2796 2.103263 ACTCGGAGATAAAGGTGATGGC 59.897 50.000 12.86 0.00 33.89 4.40
2692 2797 2.103094 CTCGGAGATAAAGGTGATGGCA 59.897 50.000 0.00 0.00 33.89 4.92
2693 2798 2.103094 TCGGAGATAAAGGTGATGGCAG 59.897 50.000 0.00 0.00 0.00 4.85
2694 2799 2.225467 GGAGATAAAGGTGATGGCAGC 58.775 52.381 0.00 0.00 42.72 5.25
2700 2805 3.731728 GGTGATGGCAGCTCCCCA 61.732 66.667 12.62 5.16 39.38 4.96
2701 2806 2.124403 GTGATGGCAGCTCCCCAG 60.124 66.667 3.69 0.00 35.48 4.45
2710 2815 2.191641 GCTCCCCAGCCATCTGAC 59.808 66.667 0.00 0.00 42.95 3.51
2711 2816 2.373707 GCTCCCCAGCCATCTGACT 61.374 63.158 0.00 0.00 42.95 3.41
2712 2817 1.828768 CTCCCCAGCCATCTGACTC 59.171 63.158 0.00 0.00 42.95 3.36
2713 2818 0.690411 CTCCCCAGCCATCTGACTCT 60.690 60.000 0.00 0.00 42.95 3.24
2714 2819 0.689080 TCCCCAGCCATCTGACTCTC 60.689 60.000 0.00 0.00 42.95 3.20
2715 2820 0.690411 CCCCAGCCATCTGACTCTCT 60.690 60.000 0.00 0.00 42.95 3.10
2716 2821 0.752054 CCCAGCCATCTGACTCTCTC 59.248 60.000 0.00 0.00 42.95 3.20
2717 2822 0.752054 CCAGCCATCTGACTCTCTCC 59.248 60.000 0.00 0.00 42.95 3.71
2718 2823 0.752054 CAGCCATCTGACTCTCTCCC 59.248 60.000 0.00 0.00 42.95 4.30
2719 2824 0.636101 AGCCATCTGACTCTCTCCCT 59.364 55.000 0.00 0.00 0.00 4.20
2720 2825 1.039856 GCCATCTGACTCTCTCCCTC 58.960 60.000 0.00 0.00 0.00 4.30
2721 2826 1.411501 GCCATCTGACTCTCTCCCTCT 60.412 57.143 0.00 0.00 0.00 3.69
2722 2827 2.954539 GCCATCTGACTCTCTCCCTCTT 60.955 54.545 0.00 0.00 0.00 2.85
2723 2828 2.958355 CCATCTGACTCTCTCCCTCTTC 59.042 54.545 0.00 0.00 0.00 2.87
2724 2829 2.818751 TCTGACTCTCTCCCTCTTCC 57.181 55.000 0.00 0.00 0.00 3.46
2725 2830 2.283834 TCTGACTCTCTCCCTCTTCCT 58.716 52.381 0.00 0.00 0.00 3.36
2726 2831 2.241176 TCTGACTCTCTCCCTCTTCCTC 59.759 54.545 0.00 0.00 0.00 3.71
2727 2832 1.065053 TGACTCTCTCCCTCTTCCTCG 60.065 57.143 0.00 0.00 0.00 4.63
2728 2833 0.395173 ACTCTCTCCCTCTTCCTCGC 60.395 60.000 0.00 0.00 0.00 5.03
2729 2834 1.076632 TCTCTCCCTCTTCCTCGCC 60.077 63.158 0.00 0.00 0.00 5.54
2730 2835 2.440430 TCTCCCTCTTCCTCGCCG 60.440 66.667 0.00 0.00 0.00 6.46
2731 2836 2.440430 CTCCCTCTTCCTCGCCGA 60.440 66.667 0.00 0.00 0.00 5.54
2732 2837 2.440430 TCCCTCTTCCTCGCCGAG 60.440 66.667 7.25 7.25 0.00 4.63
2733 2838 2.440430 CCCTCTTCCTCGCCGAGA 60.440 66.667 17.19 0.00 0.00 4.04
2734 2839 1.830408 CCCTCTTCCTCGCCGAGAT 60.830 63.158 17.19 0.00 0.00 2.75
2735 2840 0.537600 CCCTCTTCCTCGCCGAGATA 60.538 60.000 17.19 0.00 0.00 1.98
2736 2841 0.594110 CCTCTTCCTCGCCGAGATAC 59.406 60.000 17.19 0.00 0.00 2.24
2737 2842 1.600023 CTCTTCCTCGCCGAGATACT 58.400 55.000 17.19 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.064804 GCCTTTTTCTTTTCTTCATTTTGTTTG 57.935 29.630 0.00 0.00 0.00 2.93
30 31 7.962373 CGCCTTTTTCTTTTCTTCATTTTGTTT 59.038 29.630 0.00 0.00 0.00 2.83
31 32 7.413988 CCGCCTTTTTCTTTTCTTCATTTTGTT 60.414 33.333 0.00 0.00 0.00 2.83
32 33 6.037062 CCGCCTTTTTCTTTTCTTCATTTTGT 59.963 34.615 0.00 0.00 0.00 2.83
33 34 6.037062 ACCGCCTTTTTCTTTTCTTCATTTTG 59.963 34.615 0.00 0.00 0.00 2.44
34 35 6.037062 CACCGCCTTTTTCTTTTCTTCATTTT 59.963 34.615 0.00 0.00 0.00 1.82
35 36 5.523552 CACCGCCTTTTTCTTTTCTTCATTT 59.476 36.000 0.00 0.00 0.00 2.32
39 40 4.301637 TCACCGCCTTTTTCTTTTCTTC 57.698 40.909 0.00 0.00 0.00 2.87
56 57 3.103007 CGTTTCGTTCTTGGTTTTCACC 58.897 45.455 0.00 0.00 44.56 4.02
57 58 4.006026 TCGTTTCGTTCTTGGTTTTCAC 57.994 40.909 0.00 0.00 0.00 3.18
58 59 4.392445 TCTTCGTTTCGTTCTTGGTTTTCA 59.608 37.500 0.00 0.00 0.00 2.69
59 60 4.900664 TCTTCGTTTCGTTCTTGGTTTTC 58.099 39.130 0.00 0.00 0.00 2.29
60 61 4.632688 TCTCTTCGTTTCGTTCTTGGTTTT 59.367 37.500 0.00 0.00 0.00 2.43
61 62 4.186159 TCTCTTCGTTTCGTTCTTGGTTT 58.814 39.130 0.00 0.00 0.00 3.27
64 65 3.802685 AGTTCTCTTCGTTTCGTTCTTGG 59.197 43.478 0.00 0.00 0.00 3.61
66 67 7.529880 TTTTAGTTCTCTTCGTTTCGTTCTT 57.470 32.000 0.00 0.00 0.00 2.52
67 68 7.529880 TTTTTAGTTCTCTTCGTTTCGTTCT 57.470 32.000 0.00 0.00 0.00 3.01
104 106 8.970859 TTTCATGGGCATTTTTCTTTTCTTTA 57.029 26.923 0.00 0.00 0.00 1.85
119 121 1.885887 CTTTCTCGGTTTTCATGGGCA 59.114 47.619 0.00 0.00 0.00 5.36
120 122 2.159382 TCTTTCTCGGTTTTCATGGGC 58.841 47.619 0.00 0.00 0.00 5.36
121 123 4.037446 TGTTTCTTTCTCGGTTTTCATGGG 59.963 41.667 0.00 0.00 0.00 4.00
122 124 5.181690 TGTTTCTTTCTCGGTTTTCATGG 57.818 39.130 0.00 0.00 0.00 3.66
123 125 6.494842 TCTTGTTTCTTTCTCGGTTTTCATG 58.505 36.000 0.00 0.00 0.00 3.07
124 126 6.693315 TCTTGTTTCTTTCTCGGTTTTCAT 57.307 33.333 0.00 0.00 0.00 2.57
155 157 8.202461 TCTCTGTTTTCATAGGAGGTTTTCTA 57.798 34.615 0.00 0.00 0.00 2.10
156 158 7.079451 TCTCTGTTTTCATAGGAGGTTTTCT 57.921 36.000 0.00 0.00 0.00 2.52
162 164 7.360438 CGTTTCTTTCTCTGTTTTCATAGGAGG 60.360 40.741 0.00 0.00 0.00 4.30
163 165 7.385205 TCGTTTCTTTCTCTGTTTTCATAGGAG 59.615 37.037 0.00 0.00 0.00 3.69
164 166 7.214381 TCGTTTCTTTCTCTGTTTTCATAGGA 58.786 34.615 0.00 0.00 0.00 2.94
169 171 6.978343 TCTTCGTTTCTTTCTCTGTTTTCA 57.022 33.333 0.00 0.00 0.00 2.69
170 172 8.669394 TTTTCTTCGTTTCTTTCTCTGTTTTC 57.331 30.769 0.00 0.00 0.00 2.29
188 191 9.965748 TTTTTGTGTTTTCATCGATTTTTCTTC 57.034 25.926 0.00 0.00 0.00 2.87
215 218 8.823818 CAGCTTTTTCATTGATTTTCAGTTTCT 58.176 29.630 0.00 0.00 0.00 2.52
216 219 7.585210 GCAGCTTTTTCATTGATTTTCAGTTTC 59.415 33.333 0.00 0.00 0.00 2.78
220 223 6.645415 AGAGCAGCTTTTTCATTGATTTTCAG 59.355 34.615 0.00 0.00 0.00 3.02
227 230 5.948162 AGGAATAGAGCAGCTTTTTCATTGA 59.052 36.000 0.00 0.00 0.00 2.57
233 236 5.772169 ACTTGAAGGAATAGAGCAGCTTTTT 59.228 36.000 0.00 0.00 0.00 1.94
238 241 4.100189 TCCTACTTGAAGGAATAGAGCAGC 59.900 45.833 0.00 0.00 42.83 5.25
261 264 4.807304 CCATGTTAAATTAGTAGGACGCGT 59.193 41.667 13.85 13.85 0.00 6.01
266 269 9.613428 CATCAAGTCCATGTTAAATTAGTAGGA 57.387 33.333 0.00 0.00 0.00 2.94
281 284 4.385643 CCCATAAGTCACCATCAAGTCCAT 60.386 45.833 0.00 0.00 0.00 3.41
284 287 2.945668 GCCCATAAGTCACCATCAAGTC 59.054 50.000 0.00 0.00 0.00 3.01
319 322 6.787458 TCCATCCCAGAATCTACTATTTGCTA 59.213 38.462 0.00 0.00 0.00 3.49
321 324 5.869579 TCCATCCCAGAATCTACTATTTGC 58.130 41.667 0.00 0.00 0.00 3.68
342 346 1.794714 TGAGCTCCTTGTAGGGATCC 58.205 55.000 12.15 1.92 35.59 3.36
362 367 8.061268 GCGCTGTAGAAATTTGAATTTGAAAAA 58.939 29.630 0.00 0.00 38.64 1.94
396 401 7.162761 TGAGTGTCCACTAATAAATTCGGAAA 58.837 34.615 0.00 0.00 42.66 3.13
398 403 6.288941 TGAGTGTCCACTAATAAATTCGGA 57.711 37.500 0.00 0.00 42.66 4.55
401 406 9.378551 TGTGTATGAGTGTCCACTAATAAATTC 57.621 33.333 6.14 0.00 42.66 2.17
410 415 5.939764 ATACATGTGTATGAGTGTCCACT 57.060 39.130 9.11 0.00 39.57 4.00
444 449 6.970613 GTGAAGTATAATCCGGCGAAATTTTT 59.029 34.615 9.30 2.40 0.00 1.94
445 450 6.094325 TGTGAAGTATAATCCGGCGAAATTTT 59.906 34.615 9.30 5.86 0.00 1.82
449 454 4.126208 TGTGAAGTATAATCCGGCGAAA 57.874 40.909 9.30 0.00 0.00 3.46
452 457 3.184379 CACATGTGAAGTATAATCCGGCG 59.816 47.826 21.64 0.00 0.00 6.46
453 458 3.498397 CCACATGTGAAGTATAATCCGGC 59.502 47.826 27.46 0.00 0.00 6.13
454 459 3.498397 GCCACATGTGAAGTATAATCCGG 59.502 47.826 27.46 6.53 0.00 5.14
455 460 3.184379 CGCCACATGTGAAGTATAATCCG 59.816 47.826 27.46 6.68 0.00 4.18
458 463 5.666462 TGTACGCCACATGTGAAGTATAAT 58.334 37.500 27.46 6.61 30.04 1.28
459 464 5.074584 TGTACGCCACATGTGAAGTATAA 57.925 39.130 27.46 17.16 30.04 0.98
461 466 3.194755 TCTGTACGCCACATGTGAAGTAT 59.805 43.478 27.46 9.91 36.29 2.12
462 467 2.559231 TCTGTACGCCACATGTGAAGTA 59.441 45.455 27.46 23.78 36.29 2.24
463 468 1.343142 TCTGTACGCCACATGTGAAGT 59.657 47.619 27.46 24.74 36.29 3.01
464 469 2.078849 TCTGTACGCCACATGTGAAG 57.921 50.000 27.46 20.71 36.29 3.02
525 532 4.929819 AACAATAATCCGGCCCAATAAC 57.070 40.909 0.00 0.00 0.00 1.89
528 535 3.103742 ACAAACAATAATCCGGCCCAAT 58.896 40.909 0.00 0.00 0.00 3.16
529 536 2.530701 ACAAACAATAATCCGGCCCAA 58.469 42.857 0.00 0.00 0.00 4.12
533 540 6.400621 GCTGTAAAAACAAACAATAATCCGGC 60.401 38.462 0.00 0.00 0.00 6.13
536 543 9.135843 GTAGGCTGTAAAAACAAACAATAATCC 57.864 33.333 0.00 0.00 0.00 3.01
537 544 9.685828 TGTAGGCTGTAAAAACAAACAATAATC 57.314 29.630 0.00 0.00 0.00 1.75
539 546 9.871238 TTTGTAGGCTGTAAAAACAAACAATAA 57.129 25.926 6.86 0.00 35.69 1.40
541 548 8.956533 ATTTGTAGGCTGTAAAAACAAACAAT 57.043 26.923 11.90 0.00 41.35 2.71
542 549 8.035394 TGATTTGTAGGCTGTAAAAACAAACAA 58.965 29.630 11.90 1.32 41.35 2.83
543 550 7.489757 GTGATTTGTAGGCTGTAAAAACAAACA 59.510 33.333 11.90 9.81 41.35 2.83
544 551 7.489757 TGTGATTTGTAGGCTGTAAAAACAAAC 59.510 33.333 11.90 7.94 41.35 2.93
545 552 7.548097 TGTGATTTGTAGGCTGTAAAAACAAA 58.452 30.769 12.02 12.02 42.35 2.83
548 555 6.975772 TGTTGTGATTTGTAGGCTGTAAAAAC 59.024 34.615 0.00 3.01 0.00 2.43
576 583 7.272515 CGCAAGAACATGTTAATTCCGTTTAAT 59.727 33.333 11.95 0.00 43.02 1.40
584 591 7.247728 TGTATTCCGCAAGAACATGTTAATTC 58.752 34.615 11.95 4.62 37.29 2.17
690 703 0.321653 TTTTGGAGGCCGAGCTCTTC 60.322 55.000 12.85 2.75 0.00 2.87
691 704 0.606673 GTTTTGGAGGCCGAGCTCTT 60.607 55.000 12.85 0.00 0.00 2.85
692 705 1.003233 GTTTTGGAGGCCGAGCTCT 60.003 57.895 12.85 0.00 0.00 4.09
710 723 1.405105 CGTGCATTTATGGGGGTGAAG 59.595 52.381 0.00 0.00 0.00 3.02
714 727 1.756561 GGCGTGCATTTATGGGGGT 60.757 57.895 0.00 0.00 0.00 4.95
715 728 1.042559 AAGGCGTGCATTTATGGGGG 61.043 55.000 0.00 0.00 0.00 5.40
716 729 1.336755 GTAAGGCGTGCATTTATGGGG 59.663 52.381 0.00 0.00 0.00 4.96
717 730 2.020720 TGTAAGGCGTGCATTTATGGG 58.979 47.619 0.00 0.00 0.00 4.00
718 731 2.421775 TGTGTAAGGCGTGCATTTATGG 59.578 45.455 0.00 0.00 0.00 2.74
719 732 3.487376 CCTGTGTAAGGCGTGCATTTATG 60.487 47.826 0.00 0.00 39.93 1.90
720 733 2.682856 CCTGTGTAAGGCGTGCATTTAT 59.317 45.455 0.00 0.00 39.93 1.40
721 734 2.080693 CCTGTGTAAGGCGTGCATTTA 58.919 47.619 0.00 0.00 39.93 1.40
722 735 0.881118 CCTGTGTAAGGCGTGCATTT 59.119 50.000 0.00 0.00 39.93 2.32
723 736 2.555123 CCTGTGTAAGGCGTGCATT 58.445 52.632 0.00 0.00 39.93 3.56
724 737 4.301505 CCTGTGTAAGGCGTGCAT 57.698 55.556 0.00 0.00 39.93 3.96
749 762 1.867233 ACGCTGTGAGTGATTTGTCAC 59.133 47.619 0.00 0.44 42.93 3.67
750 763 1.866601 CACGCTGTGAGTGATTTGTCA 59.133 47.619 3.04 0.00 41.83 3.58
763 776 3.189287 CCTTGCTTTAAGATTCACGCTGT 59.811 43.478 0.00 0.00 38.76 4.40
777 790 2.616510 CCGTCAGATCCTTCCTTGCTTT 60.617 50.000 0.00 0.00 0.00 3.51
837 852 3.691698 AGGAAAGGAGGTAGGAGTAGG 57.308 52.381 0.00 0.00 0.00 3.18
855 870 0.586802 GGCGCGGCTATCTAAAAAGG 59.413 55.000 27.05 0.00 0.00 3.11
856 871 0.586802 GGGCGCGGCTATCTAAAAAG 59.413 55.000 32.30 0.00 0.00 2.27
857 872 0.816421 GGGGCGCGGCTATCTAAAAA 60.816 55.000 32.30 0.00 0.00 1.94
858 873 1.227734 GGGGCGCGGCTATCTAAAA 60.228 57.895 32.30 0.00 0.00 1.52
859 874 2.424302 GGGGCGCGGCTATCTAAA 59.576 61.111 32.30 0.00 0.00 1.85
881 896 2.069165 GCTTGGTGGTTGGAGGAGGT 62.069 60.000 0.00 0.00 0.00 3.85
978 998 1.043673 CCGGTGTAGGGAGGAAGAGG 61.044 65.000 0.00 0.00 0.00 3.69
983 1027 1.200519 CATTTCCGGTGTAGGGAGGA 58.799 55.000 0.00 0.00 34.45 3.71
997 1041 2.885113 GTCCTTGCCGGCCATTTC 59.115 61.111 26.77 8.18 0.00 2.17
1346 1399 3.078836 TGTAGTAGCACCCGGGGC 61.079 66.667 27.92 24.67 0.00 5.80
1388 1441 1.079503 GTTGAGCATCTCGAACACCC 58.920 55.000 0.00 0.00 34.92 4.61
1508 1561 4.501285 GCCTAGCCCCCGGGTTTC 62.501 72.222 21.85 7.82 37.65 2.78
1599 1652 1.519455 CCTGATGAACTCGTCGGCC 60.519 63.158 0.00 0.00 37.03 6.13
1822 1882 5.490139 ACAAGAGTCAAACACAACAGATG 57.510 39.130 0.00 0.00 0.00 2.90
1827 1887 4.156008 ACAAGGACAAGAGTCAAACACAAC 59.844 41.667 0.00 0.00 46.80 3.32
1833 1893 2.682856 GTGCACAAGGACAAGAGTCAAA 59.317 45.455 13.17 0.00 46.80 2.69
1839 1899 0.546122 ACTGGTGCACAAGGACAAGA 59.454 50.000 25.03 0.00 39.34 3.02
1874 1941 4.499037 AACCGGAGCAAACTGATTAAAC 57.501 40.909 9.46 0.00 0.00 2.01
1891 1958 7.602517 AATCTCTCTCAATTAACAGAAACCG 57.397 36.000 0.00 0.00 0.00 4.44
1926 2014 1.329256 AGCAAGTACACACGAGGACT 58.671 50.000 0.00 0.00 0.00 3.85
1994 2084 5.235186 CACTCGCTTATACTTTTATGCAGCT 59.765 40.000 0.00 0.00 0.00 4.24
2180 2285 9.617975 GAAGAAGAAGAAGACCAACAAATATTG 57.382 33.333 0.00 0.00 0.00 1.90
2181 2286 9.579932 AGAAGAAGAAGAAGACCAACAAATATT 57.420 29.630 0.00 0.00 0.00 1.28
2182 2287 9.579932 AAGAAGAAGAAGAAGACCAACAAATAT 57.420 29.630 0.00 0.00 0.00 1.28
2183 2288 8.980481 AAGAAGAAGAAGAAGACCAACAAATA 57.020 30.769 0.00 0.00 0.00 1.40
2184 2289 7.777440 AGAAGAAGAAGAAGAAGACCAACAAAT 59.223 33.333 0.00 0.00 0.00 2.32
2185 2290 7.112779 AGAAGAAGAAGAAGAAGACCAACAAA 58.887 34.615 0.00 0.00 0.00 2.83
2186 2291 6.653989 AGAAGAAGAAGAAGAAGACCAACAA 58.346 36.000 0.00 0.00 0.00 2.83
2187 2292 6.240549 AGAAGAAGAAGAAGAAGACCAACA 57.759 37.500 0.00 0.00 0.00 3.33
2188 2293 6.989759 AGAAGAAGAAGAAGAAGAAGACCAAC 59.010 38.462 0.00 0.00 0.00 3.77
2189 2294 7.130681 AGAAGAAGAAGAAGAAGAAGACCAA 57.869 36.000 0.00 0.00 0.00 3.67
2190 2295 6.739331 AGAAGAAGAAGAAGAAGAAGACCA 57.261 37.500 0.00 0.00 0.00 4.02
2191 2296 7.441836 AGAAGAAGAAGAAGAAGAAGAAGACC 58.558 38.462 0.00 0.00 0.00 3.85
2192 2297 8.887036 AAGAAGAAGAAGAAGAAGAAGAAGAC 57.113 34.615 0.00 0.00 0.00 3.01
2203 2308 9.890352 CCAAAAGACAATAAGAAGAAGAAGAAG 57.110 33.333 0.00 0.00 0.00 2.85
2204 2309 9.408648 ACCAAAAGACAATAAGAAGAAGAAGAA 57.591 29.630 0.00 0.00 0.00 2.52
2205 2310 8.980481 ACCAAAAGACAATAAGAAGAAGAAGA 57.020 30.769 0.00 0.00 0.00 2.87
2206 2311 9.455847 CAACCAAAAGACAATAAGAAGAAGAAG 57.544 33.333 0.00 0.00 0.00 2.85
2207 2312 8.966868 ACAACCAAAAGACAATAAGAAGAAGAA 58.033 29.630 0.00 0.00 0.00 2.52
2208 2313 8.405531 CACAACCAAAAGACAATAAGAAGAAGA 58.594 33.333 0.00 0.00 0.00 2.87
2209 2314 8.190784 ACACAACCAAAAGACAATAAGAAGAAG 58.809 33.333 0.00 0.00 0.00 2.85
2210 2315 7.973388 CACACAACCAAAAGACAATAAGAAGAA 59.027 33.333 0.00 0.00 0.00 2.52
2211 2316 7.479980 CACACAACCAAAAGACAATAAGAAGA 58.520 34.615 0.00 0.00 0.00 2.87
2212 2317 6.198966 GCACACAACCAAAAGACAATAAGAAG 59.801 38.462 0.00 0.00 0.00 2.85
2213 2318 6.039616 GCACACAACCAAAAGACAATAAGAA 58.960 36.000 0.00 0.00 0.00 2.52
2214 2319 5.126222 TGCACACAACCAAAAGACAATAAGA 59.874 36.000 0.00 0.00 0.00 2.10
2215 2320 5.347342 TGCACACAACCAAAAGACAATAAG 58.653 37.500 0.00 0.00 0.00 1.73
2216 2321 5.330455 TGCACACAACCAAAAGACAATAA 57.670 34.783 0.00 0.00 0.00 1.40
2217 2322 4.991153 TGCACACAACCAAAAGACAATA 57.009 36.364 0.00 0.00 0.00 1.90
2218 2323 3.883830 TGCACACAACCAAAAGACAAT 57.116 38.095 0.00 0.00 0.00 2.71
2219 2324 3.430098 GGATGCACACAACCAAAAGACAA 60.430 43.478 0.00 0.00 38.58 3.18
2220 2325 2.100584 GGATGCACACAACCAAAAGACA 59.899 45.455 0.00 0.00 38.58 3.41
2221 2326 2.100584 TGGATGCACACAACCAAAAGAC 59.899 45.455 0.00 0.00 44.98 3.01
2222 2327 2.382882 TGGATGCACACAACCAAAAGA 58.617 42.857 0.00 0.00 44.98 2.52
2223 2328 2.886862 TGGATGCACACAACCAAAAG 57.113 45.000 0.00 0.00 44.98 2.27
2228 2333 3.696051 AGACATTATGGATGCACACAACC 59.304 43.478 0.00 0.00 39.47 3.77
2229 2334 4.970662 AGACATTATGGATGCACACAAC 57.029 40.909 0.00 0.00 39.47 3.32
2230 2335 5.981088 AAAGACATTATGGATGCACACAA 57.019 34.783 0.00 0.00 39.47 3.33
2231 2336 5.589855 CCTAAAGACATTATGGATGCACACA 59.410 40.000 0.00 0.00 39.47 3.72
2232 2337 5.822519 TCCTAAAGACATTATGGATGCACAC 59.177 40.000 0.00 0.00 39.47 3.82
2233 2338 5.822519 GTCCTAAAGACATTATGGATGCACA 59.177 40.000 0.00 0.00 45.55 4.57
2234 2339 6.305693 GTCCTAAAGACATTATGGATGCAC 57.694 41.667 0.00 0.00 45.55 4.57
2262 2367 4.761235 ACATCAAGTCTCTGCAACAATG 57.239 40.909 0.00 0.00 0.00 2.82
2263 2368 7.310664 CAATTACATCAAGTCTCTGCAACAAT 58.689 34.615 0.00 0.00 0.00 2.71
2264 2369 6.294120 CCAATTACATCAAGTCTCTGCAACAA 60.294 38.462 0.00 0.00 0.00 2.83
2265 2370 5.181811 CCAATTACATCAAGTCTCTGCAACA 59.818 40.000 0.00 0.00 0.00 3.33
2266 2371 5.182001 ACCAATTACATCAAGTCTCTGCAAC 59.818 40.000 0.00 0.00 0.00 4.17
2267 2372 5.316167 ACCAATTACATCAAGTCTCTGCAA 58.684 37.500 0.00 0.00 0.00 4.08
2268 2373 4.910195 ACCAATTACATCAAGTCTCTGCA 58.090 39.130 0.00 0.00 0.00 4.41
2269 2374 6.989169 AGATACCAATTACATCAAGTCTCTGC 59.011 38.462 0.00 0.00 0.00 4.26
2270 2375 8.954950 AAGATACCAATTACATCAAGTCTCTG 57.045 34.615 0.00 0.00 0.00 3.35
2308 2413 9.757227 TTCACATTTTTCGACAAAAGGAAATAT 57.243 25.926 17.80 0.00 32.96 1.28
2309 2414 9.757227 ATTCACATTTTTCGACAAAAGGAAATA 57.243 25.926 17.80 6.62 32.96 1.40
2310 2415 8.550376 CATTCACATTTTTCGACAAAAGGAAAT 58.450 29.630 17.80 14.30 32.96 2.17
2311 2416 7.465245 GCATTCACATTTTTCGACAAAAGGAAA 60.465 33.333 17.80 13.27 32.96 3.13
2312 2417 6.019156 GCATTCACATTTTTCGACAAAAGGAA 60.019 34.615 17.80 13.66 32.96 3.36
2313 2418 5.461737 GCATTCACATTTTTCGACAAAAGGA 59.538 36.000 17.80 7.59 32.96 3.36
2314 2419 5.333263 GGCATTCACATTTTTCGACAAAAGG 60.333 40.000 0.11 8.05 32.96 3.11
2315 2420 5.333263 GGGCATTCACATTTTTCGACAAAAG 60.333 40.000 0.11 0.00 32.96 2.27
2316 2421 4.509600 GGGCATTCACATTTTTCGACAAAA 59.490 37.500 0.11 4.66 0.00 2.44
2317 2422 4.054671 GGGCATTCACATTTTTCGACAAA 58.945 39.130 0.00 0.00 0.00 2.83
2318 2423 3.320541 AGGGCATTCACATTTTTCGACAA 59.679 39.130 0.00 0.00 0.00 3.18
2319 2424 2.890311 AGGGCATTCACATTTTTCGACA 59.110 40.909 0.00 0.00 0.00 4.35
2320 2425 3.057596 TGAGGGCATTCACATTTTTCGAC 60.058 43.478 0.00 0.00 0.00 4.20
2321 2426 3.153130 TGAGGGCATTCACATTTTTCGA 58.847 40.909 0.00 0.00 0.00 3.71
2322 2427 3.574284 TGAGGGCATTCACATTTTTCG 57.426 42.857 0.00 0.00 0.00 3.46
2323 2428 3.681417 GCTTGAGGGCATTCACATTTTTC 59.319 43.478 0.00 0.00 0.00 2.29
2324 2429 3.071312 TGCTTGAGGGCATTCACATTTTT 59.929 39.130 0.00 0.00 37.29 1.94
2325 2430 2.633967 TGCTTGAGGGCATTCACATTTT 59.366 40.909 0.00 0.00 37.29 1.82
2326 2431 2.028748 GTGCTTGAGGGCATTCACATTT 60.029 45.455 0.00 0.00 44.34 2.32
2327 2432 1.547372 GTGCTTGAGGGCATTCACATT 59.453 47.619 0.00 0.00 44.34 2.71
2328 2433 1.180029 GTGCTTGAGGGCATTCACAT 58.820 50.000 0.00 0.00 44.34 3.21
2329 2434 1.236616 CGTGCTTGAGGGCATTCACA 61.237 55.000 0.00 0.00 44.34 3.58
2330 2435 1.237285 ACGTGCTTGAGGGCATTCAC 61.237 55.000 0.00 0.00 44.34 3.18
2331 2436 0.537143 AACGTGCTTGAGGGCATTCA 60.537 50.000 0.00 0.00 44.34 2.57
2332 2437 0.109597 CAACGTGCTTGAGGGCATTC 60.110 55.000 0.00 0.00 44.34 2.67
2333 2438 1.526575 CCAACGTGCTTGAGGGCATT 61.527 55.000 0.00 0.00 44.34 3.56
2334 2439 1.973281 CCAACGTGCTTGAGGGCAT 60.973 57.895 0.00 0.00 44.34 4.40
2335 2440 2.410322 ATCCAACGTGCTTGAGGGCA 62.410 55.000 0.00 0.00 40.15 5.36
2336 2441 1.648467 GATCCAACGTGCTTGAGGGC 61.648 60.000 0.00 0.00 30.42 5.19
2337 2442 1.026718 GGATCCAACGTGCTTGAGGG 61.027 60.000 6.95 0.00 30.42 4.30
2338 2443 1.026718 GGGATCCAACGTGCTTGAGG 61.027 60.000 15.23 0.00 30.42 3.86
2339 2444 1.361668 CGGGATCCAACGTGCTTGAG 61.362 60.000 15.23 0.00 30.42 3.02
2340 2445 1.375396 CGGGATCCAACGTGCTTGA 60.375 57.895 15.23 0.00 30.42 3.02
2341 2446 1.671054 ACGGGATCCAACGTGCTTG 60.671 57.895 15.23 0.00 42.39 4.01
2342 2447 2.747686 ACGGGATCCAACGTGCTT 59.252 55.556 15.23 0.00 42.39 3.91
2346 2451 1.745115 CATGCACGGGATCCAACGT 60.745 57.895 15.23 12.27 45.25 3.99
2347 2452 1.024046 TTCATGCACGGGATCCAACG 61.024 55.000 15.23 11.55 0.00 4.10
2348 2453 0.451783 GTTCATGCACGGGATCCAAC 59.548 55.000 15.23 2.72 0.00 3.77
2349 2454 0.679640 GGTTCATGCACGGGATCCAA 60.680 55.000 15.23 0.00 0.00 3.53
2350 2455 1.077787 GGTTCATGCACGGGATCCA 60.078 57.895 15.23 0.00 0.00 3.41
2351 2456 0.468226 TAGGTTCATGCACGGGATCC 59.532 55.000 1.92 1.92 0.00 3.36
2352 2457 2.146342 CATAGGTTCATGCACGGGATC 58.854 52.381 0.00 0.00 0.00 3.36
2353 2458 2.260844 CATAGGTTCATGCACGGGAT 57.739 50.000 0.00 0.00 0.00 3.85
2354 2459 3.778619 CATAGGTTCATGCACGGGA 57.221 52.632 0.00 0.00 0.00 5.14
2361 2466 3.391506 TCGATCCAGCATAGGTTCATG 57.608 47.619 0.00 0.00 0.00 3.07
2362 2467 3.326006 ACATCGATCCAGCATAGGTTCAT 59.674 43.478 0.00 0.00 0.00 2.57
2363 2468 2.700371 ACATCGATCCAGCATAGGTTCA 59.300 45.455 0.00 0.00 0.00 3.18
2364 2469 3.321497 GACATCGATCCAGCATAGGTTC 58.679 50.000 0.00 0.00 0.00 3.62
2365 2470 2.288457 CGACATCGATCCAGCATAGGTT 60.288 50.000 0.00 0.00 43.02 3.50
2366 2471 1.270826 CGACATCGATCCAGCATAGGT 59.729 52.381 0.00 0.00 43.02 3.08
2367 2472 1.403382 CCGACATCGATCCAGCATAGG 60.403 57.143 2.09 0.00 43.02 2.57
2368 2473 1.541588 TCCGACATCGATCCAGCATAG 59.458 52.381 2.09 0.00 43.02 2.23
2369 2474 1.616159 TCCGACATCGATCCAGCATA 58.384 50.000 2.09 0.00 43.02 3.14
2370 2475 0.972134 ATCCGACATCGATCCAGCAT 59.028 50.000 2.09 0.00 43.02 3.79
2371 2476 1.616159 TATCCGACATCGATCCAGCA 58.384 50.000 2.09 0.00 43.02 4.41
2372 2477 2.029828 AGTTATCCGACATCGATCCAGC 60.030 50.000 2.09 0.00 43.02 4.85
2373 2478 3.924918 AGTTATCCGACATCGATCCAG 57.075 47.619 2.09 0.00 43.02 3.86
2374 2479 4.368315 CAAAGTTATCCGACATCGATCCA 58.632 43.478 2.09 0.00 43.02 3.41
2375 2480 3.741344 CCAAAGTTATCCGACATCGATCC 59.259 47.826 2.09 0.00 43.02 3.36
2376 2481 4.617959 TCCAAAGTTATCCGACATCGATC 58.382 43.478 2.09 0.00 43.02 3.69
2377 2482 4.665833 TCCAAAGTTATCCGACATCGAT 57.334 40.909 2.09 0.00 43.02 3.59
2378 2483 4.617959 GATCCAAAGTTATCCGACATCGA 58.382 43.478 2.09 0.00 43.02 3.59
2379 2484 3.425525 CGATCCAAAGTTATCCGACATCG 59.574 47.826 0.00 0.00 39.44 3.84
2380 2485 4.617959 TCGATCCAAAGTTATCCGACATC 58.382 43.478 0.00 0.00 0.00 3.06
2381 2486 4.665833 TCGATCCAAAGTTATCCGACAT 57.334 40.909 0.00 0.00 0.00 3.06
2382 2487 4.142026 ACATCGATCCAAAGTTATCCGACA 60.142 41.667 0.00 0.00 0.00 4.35
2383 2488 4.369182 ACATCGATCCAAAGTTATCCGAC 58.631 43.478 0.00 0.00 0.00 4.79
2384 2489 4.617959 GACATCGATCCAAAGTTATCCGA 58.382 43.478 0.00 0.00 0.00 4.55
2385 2490 3.425525 CGACATCGATCCAAAGTTATCCG 59.574 47.826 0.00 0.00 43.02 4.18
2386 2491 3.741344 CCGACATCGATCCAAAGTTATCC 59.259 47.826 2.09 0.00 43.02 2.59
2387 2492 3.741344 CCCGACATCGATCCAAAGTTATC 59.259 47.826 2.09 0.00 43.02 1.75
2388 2493 3.134081 ACCCGACATCGATCCAAAGTTAT 59.866 43.478 2.09 0.00 43.02 1.89
2389 2494 2.498481 ACCCGACATCGATCCAAAGTTA 59.502 45.455 2.09 0.00 43.02 2.24
2390 2495 1.278127 ACCCGACATCGATCCAAAGTT 59.722 47.619 2.09 0.00 43.02 2.66
2391 2496 0.902531 ACCCGACATCGATCCAAAGT 59.097 50.000 2.09 0.00 43.02 2.66
2392 2497 1.134818 TGACCCGACATCGATCCAAAG 60.135 52.381 2.09 0.00 43.02 2.77
2393 2498 0.899019 TGACCCGACATCGATCCAAA 59.101 50.000 2.09 0.00 43.02 3.28
2394 2499 2.585876 TGACCCGACATCGATCCAA 58.414 52.632 2.09 0.00 43.02 3.53
2395 2500 4.347865 TGACCCGACATCGATCCA 57.652 55.556 2.09 0.00 43.02 3.41
2594 2699 1.539157 CAGCAAAACCTCTCCTTCCC 58.461 55.000 0.00 0.00 0.00 3.97
2595 2700 1.202940 ACCAGCAAAACCTCTCCTTCC 60.203 52.381 0.00 0.00 0.00 3.46
2596 2701 2.278332 ACCAGCAAAACCTCTCCTTC 57.722 50.000 0.00 0.00 0.00 3.46
2597 2702 2.755952 AACCAGCAAAACCTCTCCTT 57.244 45.000 0.00 0.00 0.00 3.36
2598 2703 2.441750 TGTAACCAGCAAAACCTCTCCT 59.558 45.455 0.00 0.00 0.00 3.69
2599 2704 2.552743 GTGTAACCAGCAAAACCTCTCC 59.447 50.000 0.00 0.00 0.00 3.71
2600 2705 3.898517 GTGTAACCAGCAAAACCTCTC 57.101 47.619 0.00 0.00 0.00 3.20
2614 2719 7.506328 AATTCTAGTTCTTGGTTGGTGTAAC 57.494 36.000 0.00 0.00 38.60 2.50
2615 2720 7.881232 CCTAATTCTAGTTCTTGGTTGGTGTAA 59.119 37.037 0.00 0.00 0.00 2.41
2616 2721 7.236019 TCCTAATTCTAGTTCTTGGTTGGTGTA 59.764 37.037 0.00 0.00 0.00 2.90
2617 2722 6.043938 TCCTAATTCTAGTTCTTGGTTGGTGT 59.956 38.462 0.00 0.00 0.00 4.16
2618 2723 6.472887 TCCTAATTCTAGTTCTTGGTTGGTG 58.527 40.000 0.00 0.00 0.00 4.17
2619 2724 6.697641 TCCTAATTCTAGTTCTTGGTTGGT 57.302 37.500 0.00 0.00 0.00 3.67
2620 2725 7.447238 TGTTTCCTAATTCTAGTTCTTGGTTGG 59.553 37.037 0.00 0.00 0.00 3.77
2621 2726 8.391075 TGTTTCCTAATTCTAGTTCTTGGTTG 57.609 34.615 0.00 0.00 0.00 3.77
2623 2728 9.668497 GTATGTTTCCTAATTCTAGTTCTTGGT 57.332 33.333 0.00 0.00 0.00 3.67
2624 2729 9.892130 AGTATGTTTCCTAATTCTAGTTCTTGG 57.108 33.333 0.00 0.00 0.00 3.61
2633 2738 8.603304 ACACAGGTTAGTATGTTTCCTAATTCT 58.397 33.333 0.00 0.00 0.00 2.40
2634 2739 8.788325 ACACAGGTTAGTATGTTTCCTAATTC 57.212 34.615 0.00 0.00 0.00 2.17
2635 2740 9.010029 CAACACAGGTTAGTATGTTTCCTAATT 57.990 33.333 0.00 0.00 34.87 1.40
2636 2741 7.120726 GCAACACAGGTTAGTATGTTTCCTAAT 59.879 37.037 0.00 0.00 34.87 1.73
2637 2742 6.428771 GCAACACAGGTTAGTATGTTTCCTAA 59.571 38.462 0.00 0.00 34.87 2.69
2638 2743 5.935789 GCAACACAGGTTAGTATGTTTCCTA 59.064 40.000 0.00 0.00 34.87 2.94
2639 2744 4.760204 GCAACACAGGTTAGTATGTTTCCT 59.240 41.667 0.00 0.00 34.87 3.36
2640 2745 4.760204 AGCAACACAGGTTAGTATGTTTCC 59.240 41.667 0.00 0.00 34.87 3.13
2641 2746 5.106673 GGAGCAACACAGGTTAGTATGTTTC 60.107 44.000 0.00 0.00 34.87 2.78
2642 2747 4.760204 GGAGCAACACAGGTTAGTATGTTT 59.240 41.667 0.00 0.00 34.87 2.83
2643 2748 4.202419 TGGAGCAACACAGGTTAGTATGTT 60.202 41.667 0.00 0.00 34.87 2.71
2644 2749 3.326588 TGGAGCAACACAGGTTAGTATGT 59.673 43.478 0.00 0.00 34.87 2.29
2645 2750 3.937814 TGGAGCAACACAGGTTAGTATG 58.062 45.455 0.00 0.00 34.87 2.39
2646 2751 4.844349 ATGGAGCAACACAGGTTAGTAT 57.156 40.909 0.00 0.00 34.87 2.12
2647 2752 4.528987 TGTATGGAGCAACACAGGTTAGTA 59.471 41.667 0.00 0.00 34.87 1.82
2648 2753 3.326588 TGTATGGAGCAACACAGGTTAGT 59.673 43.478 0.00 0.00 34.87 2.24
2649 2754 3.684788 GTGTATGGAGCAACACAGGTTAG 59.315 47.826 0.94 0.00 44.30 2.34
2650 2755 3.326588 AGTGTATGGAGCAACACAGGTTA 59.673 43.478 8.18 0.00 46.71 2.85
2651 2756 2.106511 AGTGTATGGAGCAACACAGGTT 59.893 45.455 8.18 0.00 46.71 3.50
2652 2757 1.699634 AGTGTATGGAGCAACACAGGT 59.300 47.619 8.18 0.00 46.71 4.00
2653 2758 2.350522 GAGTGTATGGAGCAACACAGG 58.649 52.381 8.18 0.00 46.71 4.00
2654 2759 1.995484 CGAGTGTATGGAGCAACACAG 59.005 52.381 8.18 0.00 46.71 3.66
2655 2760 1.337728 CCGAGTGTATGGAGCAACACA 60.338 52.381 8.18 0.00 46.71 3.72
2656 2761 1.067142 TCCGAGTGTATGGAGCAACAC 60.067 52.381 0.00 0.00 45.06 3.32
2657 2762 1.204704 CTCCGAGTGTATGGAGCAACA 59.795 52.381 0.00 0.00 44.83 3.33
2658 2763 1.927895 CTCCGAGTGTATGGAGCAAC 58.072 55.000 0.00 0.00 44.83 4.17
2663 2768 4.341235 CACCTTTATCTCCGAGTGTATGGA 59.659 45.833 0.00 0.00 0.00 3.41
2664 2769 4.341235 TCACCTTTATCTCCGAGTGTATGG 59.659 45.833 0.00 0.00 0.00 2.74
2665 2770 5.515797 TCACCTTTATCTCCGAGTGTATG 57.484 43.478 0.00 0.00 0.00 2.39
2666 2771 5.011125 CCATCACCTTTATCTCCGAGTGTAT 59.989 44.000 0.00 0.00 0.00 2.29
2667 2772 4.341235 CCATCACCTTTATCTCCGAGTGTA 59.659 45.833 0.00 0.00 0.00 2.90
2668 2773 3.133003 CCATCACCTTTATCTCCGAGTGT 59.867 47.826 0.00 0.00 0.00 3.55
2669 2774 3.722147 CCATCACCTTTATCTCCGAGTG 58.278 50.000 0.00 0.00 0.00 3.51
2670 2775 2.103263 GCCATCACCTTTATCTCCGAGT 59.897 50.000 0.00 0.00 0.00 4.18
2671 2776 2.103094 TGCCATCACCTTTATCTCCGAG 59.897 50.000 0.00 0.00 0.00 4.63
2672 2777 2.103094 CTGCCATCACCTTTATCTCCGA 59.897 50.000 0.00 0.00 0.00 4.55
2673 2778 2.487934 CTGCCATCACCTTTATCTCCG 58.512 52.381 0.00 0.00 0.00 4.63
2674 2779 2.158696 AGCTGCCATCACCTTTATCTCC 60.159 50.000 0.00 0.00 0.00 3.71
2675 2780 3.137533 GAGCTGCCATCACCTTTATCTC 58.862 50.000 0.00 0.00 0.00 2.75
2676 2781 2.158696 GGAGCTGCCATCACCTTTATCT 60.159 50.000 0.00 0.00 36.34 1.98
2677 2782 2.225467 GGAGCTGCCATCACCTTTATC 58.775 52.381 0.00 0.00 36.34 1.75
2678 2783 1.133668 GGGAGCTGCCATCACCTTTAT 60.134 52.381 20.97 0.00 38.95 1.40
2679 2784 0.255890 GGGAGCTGCCATCACCTTTA 59.744 55.000 20.97 0.00 38.95 1.85
2680 2785 1.000396 GGGAGCTGCCATCACCTTT 60.000 57.895 20.97 0.00 38.95 3.11
2681 2786 2.679716 GGGAGCTGCCATCACCTT 59.320 61.111 20.97 0.00 38.95 3.50
2682 2787 3.415087 GGGGAGCTGCCATCACCT 61.415 66.667 26.95 0.00 37.27 4.00
2683 2788 3.711059 CTGGGGAGCTGCCATCACC 62.711 68.421 26.95 8.61 40.95 4.02
2684 2789 2.124403 CTGGGGAGCTGCCATCAC 60.124 66.667 26.95 9.02 38.95 3.06
2685 2790 4.119363 GCTGGGGAGCTGCCATCA 62.119 66.667 26.95 14.55 38.95 3.07
2686 2791 4.891037 GGCTGGGGAGCTGCCATC 62.891 72.222 26.95 13.36 45.46 3.51
2689 2794 4.891037 GATGGCTGGGGAGCTGCC 62.891 72.222 17.42 17.42 46.26 4.85
2690 2795 3.806667 AGATGGCTGGGGAGCTGC 61.807 66.667 0.00 0.00 34.73 5.25
2691 2796 2.192443 CAGATGGCTGGGGAGCTG 59.808 66.667 0.00 0.00 38.51 4.24
2692 2797 2.041762 TCAGATGGCTGGGGAGCT 59.958 61.111 0.00 0.00 42.53 4.09
2693 2798 2.191641 GTCAGATGGCTGGGGAGC 59.808 66.667 0.00 0.00 42.53 4.70
2694 2799 0.690411 AGAGTCAGATGGCTGGGGAG 60.690 60.000 0.00 0.00 42.53 4.30
2695 2800 0.689080 GAGAGTCAGATGGCTGGGGA 60.689 60.000 0.00 0.00 42.53 4.81
2696 2801 0.690411 AGAGAGTCAGATGGCTGGGG 60.690 60.000 0.00 0.00 42.53 4.96
2697 2802 0.752054 GAGAGAGTCAGATGGCTGGG 59.248 60.000 0.00 0.00 42.53 4.45
2698 2803 0.752054 GGAGAGAGTCAGATGGCTGG 59.248 60.000 0.00 0.00 42.53 4.85
2699 2804 0.752054 GGGAGAGAGTCAGATGGCTG 59.248 60.000 0.00 0.00 43.67 4.85
2700 2805 0.636101 AGGGAGAGAGTCAGATGGCT 59.364 55.000 0.00 0.00 0.00 4.75
2701 2806 1.039856 GAGGGAGAGAGTCAGATGGC 58.960 60.000 0.00 0.00 0.00 4.40
2702 2807 2.754012 AGAGGGAGAGAGTCAGATGG 57.246 55.000 0.00 0.00 0.00 3.51
2703 2808 2.958355 GGAAGAGGGAGAGAGTCAGATG 59.042 54.545 0.00 0.00 0.00 2.90
2704 2809 2.858768 AGGAAGAGGGAGAGAGTCAGAT 59.141 50.000 0.00 0.00 0.00 2.90
2705 2810 2.241176 GAGGAAGAGGGAGAGAGTCAGA 59.759 54.545 0.00 0.00 0.00 3.27
2706 2811 2.654863 GAGGAAGAGGGAGAGAGTCAG 58.345 57.143 0.00 0.00 0.00 3.51
2707 2812 1.065053 CGAGGAAGAGGGAGAGAGTCA 60.065 57.143 0.00 0.00 0.00 3.41
2708 2813 1.675552 CGAGGAAGAGGGAGAGAGTC 58.324 60.000 0.00 0.00 0.00 3.36
2709 2814 0.395173 GCGAGGAAGAGGGAGAGAGT 60.395 60.000 0.00 0.00 0.00 3.24
2710 2815 1.106944 GGCGAGGAAGAGGGAGAGAG 61.107 65.000 0.00 0.00 0.00 3.20
2711 2816 1.076632 GGCGAGGAAGAGGGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
2712 2817 2.485795 CGGCGAGGAAGAGGGAGAG 61.486 68.421 0.00 0.00 0.00 3.20
2713 2818 2.440430 CGGCGAGGAAGAGGGAGA 60.440 66.667 0.00 0.00 0.00 3.71
2714 2819 2.440430 TCGGCGAGGAAGAGGGAG 60.440 66.667 4.99 0.00 0.00 4.30
2715 2820 2.285889 ATCTCGGCGAGGAAGAGGGA 62.286 60.000 33.93 14.91 33.16 4.20
2716 2821 0.537600 TATCTCGGCGAGGAAGAGGG 60.538 60.000 33.93 9.62 33.16 4.30
2717 2822 0.594110 GTATCTCGGCGAGGAAGAGG 59.406 60.000 33.93 10.39 33.16 3.69
2718 2823 1.600023 AGTATCTCGGCGAGGAAGAG 58.400 55.000 33.93 11.17 0.00 2.85
2719 2824 3.802862 AGTATCTCGGCGAGGAAGA 57.197 52.632 33.93 17.54 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.