Multiple sequence alignment - TraesCS3A01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G129200 chr3A 100.000 3905 0 0 1 3905 106656577 106660481 0.000000e+00 7212.0
1 TraesCS3A01G129200 chr3B 86.781 1755 132 38 757 2481 139774566 139776250 0.000000e+00 1864.0
2 TraesCS3A01G129200 chr3B 91.865 713 38 10 3208 3901 139777048 139777759 0.000000e+00 977.0
3 TraesCS3A01G129200 chr3B 88.906 640 61 7 2589 3222 139776291 139776926 0.000000e+00 780.0
4 TraesCS3A01G129200 chr3D 87.739 1362 103 44 2589 3901 90371075 90372421 0.000000e+00 1531.0
5 TraesCS3A01G129200 chr3D 88.406 966 79 14 1545 2481 90370071 90371032 0.000000e+00 1133.0
6 TraesCS3A01G129200 chr3D 87.403 770 45 19 758 1502 90369317 90370059 0.000000e+00 837.0
7 TraesCS3A01G129200 chr3D 95.556 45 1 1 1503 1546 595230780 595230736 1.950000e-08 71.3
8 TraesCS3A01G129200 chr6D 96.825 63 2 0 1142 1204 152263886 152263948 5.340000e-19 106.0
9 TraesCS3A01G129200 chr6B 96.825 63 2 0 1142 1204 276740052 276740114 5.340000e-19 106.0
10 TraesCS3A01G129200 chr6A 96.825 63 2 0 1142 1204 190599621 190599559 5.340000e-19 106.0
11 TraesCS3A01G129200 chr7D 93.548 62 4 0 1142 1203 448756345 448756406 4.150000e-15 93.5
12 TraesCS3A01G129200 chr7B 93.548 62 4 0 1142 1203 466046991 466047052 4.150000e-15 93.5
13 TraesCS3A01G129200 chr7A 93.548 62 4 0 1142 1203 547337356 547337295 4.150000e-15 93.5
14 TraesCS3A01G129200 chr5B 97.826 46 0 1 1502 1546 474466656 474466611 1.160000e-10 78.7
15 TraesCS3A01G129200 chr5B 92.157 51 3 1 1504 1553 589999870 589999820 1.950000e-08 71.3
16 TraesCS3A01G129200 chr5B 95.455 44 1 1 1503 1545 695476015 695476058 7.000000e-08 69.4
17 TraesCS3A01G129200 chr5A 97.826 46 0 1 1502 1546 496301401 496301356 1.160000e-10 78.7
18 TraesCS3A01G129200 chr5A 92.453 53 3 1 1503 1554 600439794 600439742 1.500000e-09 75.0
19 TraesCS3A01G129200 chr1A 97.727 44 0 1 1503 1545 460934519 460934476 1.500000e-09 75.0
20 TraesCS3A01G129200 chr5D 92.308 52 3 1 1503 1553 481427149 481427098 5.410000e-09 73.1
21 TraesCS3A01G129200 chr4B 95.556 45 1 1 1503 1546 511163762 511163806 1.950000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G129200 chr3A 106656577 106660481 3904 False 7212 7212 100.000000 1 3905 1 chr3A.!!$F1 3904
1 TraesCS3A01G129200 chr3B 139774566 139777759 3193 False 1207 1864 89.184000 757 3901 3 chr3B.!!$F1 3144
2 TraesCS3A01G129200 chr3D 90369317 90372421 3104 False 1167 1531 87.849333 758 3901 3 chr3D.!!$F1 3143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.041238 TCCTACCAGCTAGCCACTGT 59.959 55.0 12.13 6.2 33.09 3.55 F
1245 1260 0.036765 TTGGTTCGATCCCCTGTTCG 60.037 55.0 10.02 0.0 35.51 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1842 0.040336 GAGCGCGAGATACAATCCGA 60.040 55.0 12.1 0.0 0.00 4.55 R
3190 3302 0.242017 GAAGGACAGCGCTTGCATTT 59.758 50.0 7.5 0.0 42.66 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.604875 GGGTGAGGAATCAAACTACGA 57.395 47.619 0.00 0.00 0.00 3.43
21 22 3.934068 GGGTGAGGAATCAAACTACGAA 58.066 45.455 0.00 0.00 0.00 3.85
22 23 3.683340 GGGTGAGGAATCAAACTACGAAC 59.317 47.826 0.00 0.00 0.00 3.95
23 24 3.683340 GGTGAGGAATCAAACTACGAACC 59.317 47.826 0.00 0.00 0.00 3.62
24 25 4.562963 GGTGAGGAATCAAACTACGAACCT 60.563 45.833 0.00 0.00 0.00 3.50
25 26 5.337009 GGTGAGGAATCAAACTACGAACCTA 60.337 44.000 0.00 0.00 0.00 3.08
26 27 6.338937 GTGAGGAATCAAACTACGAACCTAT 58.661 40.000 0.00 0.00 0.00 2.57
27 28 6.476053 GTGAGGAATCAAACTACGAACCTATC 59.524 42.308 0.00 0.00 0.00 2.08
38 39 2.329379 CGAACCTATCGCTGCTAATCC 58.671 52.381 0.00 0.00 45.89 3.01
39 40 2.029828 CGAACCTATCGCTGCTAATCCT 60.030 50.000 0.00 0.00 45.89 3.24
40 41 3.190744 CGAACCTATCGCTGCTAATCCTA 59.809 47.826 0.00 0.00 45.89 2.94
41 42 4.487019 GAACCTATCGCTGCTAATCCTAC 58.513 47.826 0.00 0.00 0.00 3.18
42 43 2.826725 ACCTATCGCTGCTAATCCTACC 59.173 50.000 0.00 0.00 0.00 3.18
43 44 2.826128 CCTATCGCTGCTAATCCTACCA 59.174 50.000 0.00 0.00 0.00 3.25
44 45 3.119316 CCTATCGCTGCTAATCCTACCAG 60.119 52.174 0.00 0.00 0.00 4.00
45 46 0.389391 TCGCTGCTAATCCTACCAGC 59.611 55.000 0.00 0.00 45.32 4.85
46 47 0.390860 CGCTGCTAATCCTACCAGCT 59.609 55.000 9.42 0.00 46.28 4.24
47 48 1.613925 CGCTGCTAATCCTACCAGCTA 59.386 52.381 9.42 0.00 46.28 3.32
48 49 2.352225 CGCTGCTAATCCTACCAGCTAG 60.352 54.545 9.42 0.00 46.28 3.42
49 50 2.611722 GCTGCTAATCCTACCAGCTAGC 60.612 54.545 6.62 6.62 45.32 3.42
50 51 1.971357 TGCTAATCCTACCAGCTAGCC 59.029 52.381 12.13 0.00 35.23 3.93
51 52 1.971357 GCTAATCCTACCAGCTAGCCA 59.029 52.381 12.13 0.00 32.46 4.75
52 53 2.289133 GCTAATCCTACCAGCTAGCCAC 60.289 54.545 12.13 0.00 32.46 5.01
53 54 2.182516 AATCCTACCAGCTAGCCACT 57.817 50.000 12.13 0.00 0.00 4.00
54 55 1.418334 ATCCTACCAGCTAGCCACTG 58.582 55.000 12.13 2.95 34.82 3.66
55 56 0.041238 TCCTACCAGCTAGCCACTGT 59.959 55.000 12.13 6.20 33.09 3.55
56 57 1.286849 TCCTACCAGCTAGCCACTGTA 59.713 52.381 12.13 7.05 33.09 2.74
57 58 2.108168 CCTACCAGCTAGCCACTGTAA 58.892 52.381 12.13 0.00 33.09 2.41
58 59 2.159085 CCTACCAGCTAGCCACTGTAAC 60.159 54.545 12.13 0.00 33.09 2.50
59 60 1.645710 ACCAGCTAGCCACTGTAACT 58.354 50.000 12.13 0.00 33.09 2.24
60 61 1.978580 ACCAGCTAGCCACTGTAACTT 59.021 47.619 12.13 0.00 33.09 2.66
61 62 2.289694 ACCAGCTAGCCACTGTAACTTG 60.290 50.000 12.13 0.00 33.09 3.16
62 63 2.289694 CCAGCTAGCCACTGTAACTTGT 60.290 50.000 12.13 0.00 33.09 3.16
63 64 3.056107 CCAGCTAGCCACTGTAACTTGTA 60.056 47.826 12.13 0.00 33.09 2.41
64 65 4.562757 CCAGCTAGCCACTGTAACTTGTAA 60.563 45.833 12.13 0.00 33.09 2.41
65 66 4.627467 CAGCTAGCCACTGTAACTTGTAAG 59.373 45.833 12.13 0.00 0.00 2.34
66 67 3.371285 GCTAGCCACTGTAACTTGTAAGC 59.629 47.826 2.29 0.00 0.00 3.09
67 68 3.771577 AGCCACTGTAACTTGTAAGCT 57.228 42.857 0.00 0.00 0.00 3.74
68 69 4.086706 AGCCACTGTAACTTGTAAGCTT 57.913 40.909 3.48 3.48 0.00 3.74
69 70 4.065789 AGCCACTGTAACTTGTAAGCTTC 58.934 43.478 0.00 0.00 0.00 3.86
70 71 3.120649 GCCACTGTAACTTGTAAGCTTCG 60.121 47.826 0.00 0.00 0.00 3.79
71 72 3.432252 CCACTGTAACTTGTAAGCTTCGG 59.568 47.826 0.00 0.00 0.00 4.30
72 73 4.056050 CACTGTAACTTGTAAGCTTCGGT 58.944 43.478 0.00 0.00 0.00 4.69
73 74 4.056050 ACTGTAACTTGTAAGCTTCGGTG 58.944 43.478 0.00 0.00 0.00 4.94
74 75 4.056050 CTGTAACTTGTAAGCTTCGGTGT 58.944 43.478 0.00 0.00 0.00 4.16
75 76 4.053295 TGTAACTTGTAAGCTTCGGTGTC 58.947 43.478 0.00 0.00 0.00 3.67
76 77 2.165319 ACTTGTAAGCTTCGGTGTCC 57.835 50.000 0.00 0.00 0.00 4.02
77 78 1.414919 ACTTGTAAGCTTCGGTGTCCA 59.585 47.619 0.00 0.00 0.00 4.02
78 79 2.158871 ACTTGTAAGCTTCGGTGTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
79 80 2.623878 TGTAAGCTTCGGTGTCCAAA 57.376 45.000 0.00 0.00 0.00 3.28
80 81 3.134574 TGTAAGCTTCGGTGTCCAAAT 57.865 42.857 0.00 0.00 0.00 2.32
81 82 4.274602 TGTAAGCTTCGGTGTCCAAATA 57.725 40.909 0.00 0.00 0.00 1.40
82 83 4.250464 TGTAAGCTTCGGTGTCCAAATAG 58.750 43.478 0.00 0.00 0.00 1.73
83 84 2.403252 AGCTTCGGTGTCCAAATAGG 57.597 50.000 0.00 0.00 39.47 2.57
84 85 0.733150 GCTTCGGTGTCCAAATAGGC 59.267 55.000 0.00 0.00 37.29 3.93
85 86 1.948611 GCTTCGGTGTCCAAATAGGCA 60.949 52.381 0.00 0.00 37.29 4.75
86 87 2.009774 CTTCGGTGTCCAAATAGGCAG 58.990 52.381 0.00 0.00 37.29 4.85
87 88 0.392461 TCGGTGTCCAAATAGGCAGC 60.392 55.000 0.00 0.00 38.04 5.25
88 89 2.098293 GGTGTCCAAATAGGCAGCG 58.902 57.895 0.00 0.00 37.29 5.18
89 90 0.676782 GGTGTCCAAATAGGCAGCGT 60.677 55.000 0.00 0.00 37.29 5.07
90 91 0.447801 GTGTCCAAATAGGCAGCGTG 59.552 55.000 0.00 0.00 37.29 5.34
91 92 0.676466 TGTCCAAATAGGCAGCGTGG 60.676 55.000 0.00 0.00 37.29 4.94
92 93 1.077787 TCCAAATAGGCAGCGTGGG 60.078 57.895 0.00 0.00 37.29 4.61
93 94 2.120909 CCAAATAGGCAGCGTGGGG 61.121 63.158 0.00 0.00 0.00 4.96
94 95 1.077787 CAAATAGGCAGCGTGGGGA 60.078 57.895 0.00 0.00 0.00 4.81
95 96 0.466189 CAAATAGGCAGCGTGGGGAT 60.466 55.000 0.00 0.00 0.00 3.85
96 97 1.136828 AAATAGGCAGCGTGGGGATA 58.863 50.000 0.00 0.00 0.00 2.59
97 98 1.362224 AATAGGCAGCGTGGGGATAT 58.638 50.000 0.00 0.00 0.00 1.63
98 99 2.247699 ATAGGCAGCGTGGGGATATA 57.752 50.000 0.00 0.00 0.00 0.86
99 100 2.018355 TAGGCAGCGTGGGGATATAA 57.982 50.000 0.00 0.00 0.00 0.98
100 101 1.136828 AGGCAGCGTGGGGATATAAA 58.863 50.000 0.00 0.00 0.00 1.40
101 102 1.493022 AGGCAGCGTGGGGATATAAAA 59.507 47.619 0.00 0.00 0.00 1.52
102 103 2.092103 AGGCAGCGTGGGGATATAAAAA 60.092 45.455 0.00 0.00 0.00 1.94
103 104 2.034179 GGCAGCGTGGGGATATAAAAAC 59.966 50.000 0.00 0.00 0.00 2.43
104 105 2.949644 GCAGCGTGGGGATATAAAAACT 59.050 45.455 0.00 0.00 0.00 2.66
105 106 4.131596 GCAGCGTGGGGATATAAAAACTA 58.868 43.478 0.00 0.00 0.00 2.24
106 107 4.760204 GCAGCGTGGGGATATAAAAACTAT 59.240 41.667 0.00 0.00 0.00 2.12
107 108 5.935789 GCAGCGTGGGGATATAAAAACTATA 59.064 40.000 0.00 0.00 0.00 1.31
108 109 6.428771 GCAGCGTGGGGATATAAAAACTATAA 59.571 38.462 0.00 0.00 0.00 0.98
109 110 7.360946 GCAGCGTGGGGATATAAAAACTATAAG 60.361 40.741 0.00 0.00 0.00 1.73
110 111 6.653740 AGCGTGGGGATATAAAAACTATAAGC 59.346 38.462 0.00 0.00 0.00 3.09
111 112 6.128090 GCGTGGGGATATAAAAACTATAAGCC 60.128 42.308 0.00 0.00 0.00 4.35
112 113 6.373495 CGTGGGGATATAAAAACTATAAGCCC 59.627 42.308 0.00 0.00 32.12 5.19
113 114 6.662234 GTGGGGATATAAAAACTATAAGCCCC 59.338 42.308 17.32 17.32 42.53 5.80
114 115 5.884232 GGGGATATAAAAACTATAAGCCCCG 59.116 44.000 0.00 0.00 37.91 5.73
115 116 6.296605 GGGGATATAAAAACTATAAGCCCCGA 60.297 42.308 0.00 0.00 37.91 5.14
116 117 7.344134 GGGATATAAAAACTATAAGCCCCGAT 58.656 38.462 0.00 0.00 0.00 4.18
117 118 8.488668 GGGATATAAAAACTATAAGCCCCGATA 58.511 37.037 0.00 0.00 0.00 2.92
118 119 9.543783 GGATATAAAAACTATAAGCCCCGATAG 57.456 37.037 0.00 0.00 0.00 2.08
124 125 9.856162 AAAAACTATAAGCCCCGATAGATTTAA 57.144 29.630 0.00 0.00 32.56 1.52
125 126 9.856162 AAAACTATAAGCCCCGATAGATTTAAA 57.144 29.630 0.00 0.00 32.20 1.52
126 127 8.843885 AACTATAAGCCCCGATAGATTTAAAC 57.156 34.615 0.00 0.00 39.76 2.01
127 128 7.970102 ACTATAAGCCCCGATAGATTTAAACA 58.030 34.615 0.00 0.00 39.76 2.83
128 129 8.603304 ACTATAAGCCCCGATAGATTTAAACAT 58.397 33.333 0.00 0.00 39.76 2.71
129 130 9.449719 CTATAAGCCCCGATAGATTTAAACATT 57.550 33.333 0.00 0.00 39.76 2.71
130 131 8.706322 ATAAGCCCCGATAGATTTAAACATTT 57.294 30.769 0.00 0.00 39.76 2.32
131 132 7.418337 AAGCCCCGATAGATTTAAACATTTT 57.582 32.000 0.00 0.00 39.76 1.82
132 133 7.418337 AGCCCCGATAGATTTAAACATTTTT 57.582 32.000 0.00 0.00 39.76 1.94
133 134 7.264947 AGCCCCGATAGATTTAAACATTTTTG 58.735 34.615 0.00 0.00 39.76 2.44
134 135 7.123547 AGCCCCGATAGATTTAAACATTTTTGA 59.876 33.333 0.00 0.00 39.76 2.69
135 136 7.762159 GCCCCGATAGATTTAAACATTTTTGAA 59.238 33.333 0.00 0.00 39.76 2.69
136 137 9.646427 CCCCGATAGATTTAAACATTTTTGAAA 57.354 29.630 0.00 0.00 39.76 2.69
241 242 6.927294 AAAAACGCAAACATATTTTGGGAA 57.073 29.167 22.20 0.00 42.63 3.97
242 243 7.503521 AAAAACGCAAACATATTTTGGGAAT 57.496 28.000 22.20 13.62 42.63 3.01
243 244 6.720012 AAACGCAAACATATTTTGGGAATC 57.280 33.333 22.20 5.43 42.63 2.52
244 245 5.659440 ACGCAAACATATTTTGGGAATCT 57.341 34.783 22.20 7.70 42.63 2.40
245 246 6.036577 ACGCAAACATATTTTGGGAATCTT 57.963 33.333 22.20 7.46 42.63 2.40
246 247 5.868801 ACGCAAACATATTTTGGGAATCTTG 59.131 36.000 22.20 0.22 42.63 3.02
247 248 6.098679 CGCAAACATATTTTGGGAATCTTGA 58.901 36.000 15.74 0.00 42.63 3.02
248 249 6.757947 CGCAAACATATTTTGGGAATCTTGAT 59.242 34.615 15.74 0.00 42.63 2.57
249 250 7.278424 CGCAAACATATTTTGGGAATCTTGATT 59.722 33.333 15.74 0.00 42.63 2.57
250 251 9.598517 GCAAACATATTTTGGGAATCTTGATTA 57.401 29.630 10.41 0.00 0.00 1.75
331 332 9.708092 ATTCCCCAATTTATTTTTGCATTTTTG 57.292 25.926 0.00 0.00 0.00 2.44
332 333 8.469309 TCCCCAATTTATTTTTGCATTTTTGA 57.531 26.923 0.00 0.00 0.00 2.69
333 334 8.917088 TCCCCAATTTATTTTTGCATTTTTGAA 58.083 25.926 0.00 0.00 0.00 2.69
334 335 8.976471 CCCCAATTTATTTTTGCATTTTTGAAC 58.024 29.630 0.00 0.00 0.00 3.18
335 336 9.525409 CCCAATTTATTTTTGCATTTTTGAACA 57.475 25.926 0.00 0.00 0.00 3.18
394 395 8.452989 GAAAGTATTTCGAAAACATGAGCATT 57.547 30.769 15.66 0.00 46.13 3.56
395 396 8.816640 AAAGTATTTCGAAAACATGAGCATTT 57.183 26.923 15.66 6.60 27.08 2.32
396 397 8.816640 AAGTATTTCGAAAACATGAGCATTTT 57.183 26.923 15.66 0.00 0.00 1.82
397 398 8.816640 AGTATTTCGAAAACATGAGCATTTTT 57.183 26.923 15.66 0.00 0.00 1.94
398 399 8.915654 AGTATTTCGAAAACATGAGCATTTTTC 58.084 29.630 15.66 4.08 36.36 2.29
403 404 6.710692 GAAAACATGAGCATTTTTCGGAAT 57.289 33.333 0.00 0.00 31.51 3.01
404 405 7.120789 GAAAACATGAGCATTTTTCGGAATT 57.879 32.000 0.00 0.00 31.51 2.17
405 406 6.710692 AAACATGAGCATTTTTCGGAATTC 57.289 33.333 0.00 0.00 0.00 2.17
406 407 4.747810 ACATGAGCATTTTTCGGAATTCC 58.252 39.130 15.01 15.01 0.00 3.01
407 408 4.463891 ACATGAGCATTTTTCGGAATTCCT 59.536 37.500 22.05 0.00 0.00 3.36
408 409 5.652014 ACATGAGCATTTTTCGGAATTCCTA 59.348 36.000 22.05 8.91 0.00 2.94
409 410 6.152661 ACATGAGCATTTTTCGGAATTCCTAA 59.847 34.615 22.05 14.84 0.00 2.69
410 411 6.582677 TGAGCATTTTTCGGAATTCCTAAA 57.417 33.333 22.05 19.76 0.00 1.85
411 412 6.620678 TGAGCATTTTTCGGAATTCCTAAAG 58.379 36.000 22.05 12.49 33.13 1.85
412 413 6.432783 TGAGCATTTTTCGGAATTCCTAAAGA 59.567 34.615 22.05 17.94 33.13 2.52
413 414 7.122650 TGAGCATTTTTCGGAATTCCTAAAGAT 59.877 33.333 22.05 19.23 33.13 2.40
414 415 7.840931 AGCATTTTTCGGAATTCCTAAAGATT 58.159 30.769 22.05 7.86 33.13 2.40
415 416 8.314021 AGCATTTTTCGGAATTCCTAAAGATTT 58.686 29.630 22.05 11.35 33.13 2.17
416 417 8.935844 GCATTTTTCGGAATTCCTAAAGATTTT 58.064 29.630 22.05 2.44 33.13 1.82
527 528 9.914131 AAGCTAACAATTTTGAATCCTAAGTTC 57.086 29.630 0.00 0.00 0.00 3.01
528 529 9.301897 AGCTAACAATTTTGAATCCTAAGTTCT 57.698 29.630 0.00 0.00 0.00 3.01
529 530 9.914131 GCTAACAATTTTGAATCCTAAGTTCTT 57.086 29.630 0.00 0.00 0.00 2.52
537 538 9.862149 TTTTGAATCCTAAGTTCTTTTACCTCT 57.138 29.630 0.00 0.00 0.00 3.69
538 539 8.848474 TTGAATCCTAAGTTCTTTTACCTCTG 57.152 34.615 0.00 0.00 0.00 3.35
539 540 8.202461 TGAATCCTAAGTTCTTTTACCTCTGA 57.798 34.615 0.00 0.00 0.00 3.27
540 541 8.826765 TGAATCCTAAGTTCTTTTACCTCTGAT 58.173 33.333 0.00 0.00 0.00 2.90
541 542 9.674068 GAATCCTAAGTTCTTTTACCTCTGATT 57.326 33.333 0.00 0.00 0.00 2.57
543 544 8.848474 TCCTAAGTTCTTTTACCTCTGATTTG 57.152 34.615 0.00 0.00 0.00 2.32
544 545 8.437575 TCCTAAGTTCTTTTACCTCTGATTTGT 58.562 33.333 0.00 0.00 0.00 2.83
545 546 9.067986 CCTAAGTTCTTTTACCTCTGATTTGTT 57.932 33.333 0.00 0.00 0.00 2.83
548 549 9.586435 AAGTTCTTTTACCTCTGATTTGTTTTG 57.414 29.630 0.00 0.00 0.00 2.44
549 550 8.966868 AGTTCTTTTACCTCTGATTTGTTTTGA 58.033 29.630 0.00 0.00 0.00 2.69
550 551 9.581099 GTTCTTTTACCTCTGATTTGTTTTGAA 57.419 29.630 0.00 0.00 0.00 2.69
558 559 9.447157 ACCTCTGATTTGTTTTGAAAATTTTGA 57.553 25.926 8.47 0.00 0.00 2.69
576 577 8.680707 AATTTTGAACAAATTTTGAAAACCGG 57.319 26.923 15.81 0.00 0.00 5.28
577 578 4.866682 TGAACAAATTTTGAAAACCGGC 57.133 36.364 15.81 0.00 0.00 6.13
578 579 4.253685 TGAACAAATTTTGAAAACCGGCA 58.746 34.783 15.81 0.00 0.00 5.69
579 580 4.093556 TGAACAAATTTTGAAAACCGGCAC 59.906 37.500 15.81 0.00 0.00 5.01
580 581 3.600388 ACAAATTTTGAAAACCGGCACA 58.400 36.364 15.81 0.00 0.00 4.57
581 582 4.195416 ACAAATTTTGAAAACCGGCACAT 58.805 34.783 15.81 0.00 0.00 3.21
582 583 4.637977 ACAAATTTTGAAAACCGGCACATT 59.362 33.333 15.81 0.00 0.00 2.71
583 584 5.124617 ACAAATTTTGAAAACCGGCACATTT 59.875 32.000 15.81 0.00 0.00 2.32
584 585 5.826601 AATTTTGAAAACCGGCACATTTT 57.173 30.435 0.00 0.00 0.00 1.82
585 586 5.826601 ATTTTGAAAACCGGCACATTTTT 57.173 30.435 0.00 0.00 0.00 1.94
674 675 9.423061 ACATTTTTGAATAGTTGATTGCTTACC 57.577 29.630 0.00 0.00 0.00 2.85
675 676 9.421806 CATTTTTGAATAGTTGATTGCTTACCA 57.578 29.630 0.00 0.00 0.00 3.25
676 677 8.810652 TTTTTGAATAGTTGATTGCTTACCAC 57.189 30.769 0.00 0.00 0.00 4.16
677 678 7.517614 TTTGAATAGTTGATTGCTTACCACA 57.482 32.000 0.00 0.00 0.00 4.17
678 679 7.701539 TTGAATAGTTGATTGCTTACCACAT 57.298 32.000 0.00 0.00 0.00 3.21
679 680 8.800370 TTGAATAGTTGATTGCTTACCACATA 57.200 30.769 0.00 0.00 0.00 2.29
680 681 8.978874 TGAATAGTTGATTGCTTACCACATAT 57.021 30.769 0.00 0.00 0.00 1.78
681 682 8.839343 TGAATAGTTGATTGCTTACCACATATG 58.161 33.333 0.00 0.00 0.00 1.78
682 683 8.752005 AATAGTTGATTGCTTACCACATATGT 57.248 30.769 1.41 1.41 0.00 2.29
683 684 6.441093 AGTTGATTGCTTACCACATATGTG 57.559 37.500 26.02 26.02 45.23 3.21
684 685 5.945784 AGTTGATTGCTTACCACATATGTGT 59.054 36.000 29.25 20.63 44.21 3.72
685 686 6.094048 AGTTGATTGCTTACCACATATGTGTC 59.906 38.462 29.25 19.29 44.21 3.67
686 687 5.495640 TGATTGCTTACCACATATGTGTCA 58.504 37.500 29.25 21.25 44.21 3.58
687 688 5.353956 TGATTGCTTACCACATATGTGTCAC 59.646 40.000 29.25 16.45 44.21 3.67
688 689 4.551702 TGCTTACCACATATGTGTCACT 57.448 40.909 29.25 14.13 44.21 3.41
689 690 4.905429 TGCTTACCACATATGTGTCACTT 58.095 39.130 29.25 13.51 44.21 3.16
690 691 4.694982 TGCTTACCACATATGTGTCACTTG 59.305 41.667 29.25 17.56 44.21 3.16
691 692 4.094887 GCTTACCACATATGTGTCACTTGG 59.905 45.833 29.25 17.38 44.21 3.61
692 693 3.788227 ACCACATATGTGTCACTTGGT 57.212 42.857 29.25 17.97 44.21 3.67
693 694 4.901197 ACCACATATGTGTCACTTGGTA 57.099 40.909 29.25 0.00 44.21 3.25
694 695 5.235850 ACCACATATGTGTCACTTGGTAA 57.764 39.130 29.25 0.00 44.21 2.85
695 696 5.626142 ACCACATATGTGTCACTTGGTAAA 58.374 37.500 29.25 0.00 44.21 2.01
696 697 6.065374 ACCACATATGTGTCACTTGGTAAAA 58.935 36.000 29.25 0.00 44.21 1.52
697 698 6.719370 ACCACATATGTGTCACTTGGTAAAAT 59.281 34.615 29.25 0.00 44.21 1.82
698 699 7.885922 ACCACATATGTGTCACTTGGTAAAATA 59.114 33.333 29.25 0.00 44.21 1.40
699 700 8.397906 CCACATATGTGTCACTTGGTAAAATAG 58.602 37.037 29.25 8.37 44.21 1.73
700 701 9.161629 CACATATGTGTCACTTGGTAAAATAGA 57.838 33.333 24.91 0.00 40.96 1.98
701 702 9.905713 ACATATGTGTCACTTGGTAAAATAGAT 57.094 29.630 7.78 0.00 31.41 1.98
703 704 9.905713 ATATGTGTCACTTGGTAAAATAGATGT 57.094 29.630 4.27 0.00 0.00 3.06
704 705 7.433708 TGTGTCACTTGGTAAAATAGATGTG 57.566 36.000 4.27 0.00 0.00 3.21
705 706 7.220740 TGTGTCACTTGGTAAAATAGATGTGA 58.779 34.615 4.27 0.00 0.00 3.58
706 707 7.882791 TGTGTCACTTGGTAAAATAGATGTGAT 59.117 33.333 4.27 0.00 35.97 3.06
707 708 9.378551 GTGTCACTTGGTAAAATAGATGTGATA 57.621 33.333 0.00 0.00 35.97 2.15
708 709 9.952030 TGTCACTTGGTAAAATAGATGTGATAA 57.048 29.630 0.00 0.00 35.97 1.75
739 740 8.587952 AAAGAAAAACAGATACGGAAAAATGG 57.412 30.769 0.00 0.00 0.00 3.16
740 741 7.519032 AGAAAAACAGATACGGAAAAATGGA 57.481 32.000 0.00 0.00 0.00 3.41
741 742 7.947282 AGAAAAACAGATACGGAAAAATGGAA 58.053 30.769 0.00 0.00 0.00 3.53
742 743 8.417884 AGAAAAACAGATACGGAAAAATGGAAA 58.582 29.630 0.00 0.00 0.00 3.13
743 744 8.950208 AAAAACAGATACGGAAAAATGGAAAA 57.050 26.923 0.00 0.00 0.00 2.29
744 745 7.940178 AAACAGATACGGAAAAATGGAAAAC 57.060 32.000 0.00 0.00 0.00 2.43
745 746 6.642707 ACAGATACGGAAAAATGGAAAACA 57.357 33.333 0.00 0.00 0.00 2.83
746 747 6.677913 ACAGATACGGAAAAATGGAAAACAG 58.322 36.000 0.00 0.00 0.00 3.16
747 748 6.092748 CAGATACGGAAAAATGGAAAACAGG 58.907 40.000 0.00 0.00 0.00 4.00
748 749 3.106242 ACGGAAAAATGGAAAACAGGC 57.894 42.857 0.00 0.00 0.00 4.85
749 750 2.224185 ACGGAAAAATGGAAAACAGGCC 60.224 45.455 0.00 0.00 0.00 5.19
750 751 2.412870 GGAAAAATGGAAAACAGGCCG 58.587 47.619 0.00 0.00 0.00 6.13
751 752 2.412870 GAAAAATGGAAAACAGGCCGG 58.587 47.619 0.00 0.00 0.00 6.13
752 753 0.684535 AAAATGGAAAACAGGCCGGG 59.315 50.000 8.08 1.20 0.00 5.73
753 754 1.826340 AAATGGAAAACAGGCCGGGC 61.826 55.000 22.67 22.67 0.00 6.13
774 775 0.818296 AGGATACAGCTCTCGCGTTT 59.182 50.000 5.77 0.00 42.32 3.60
815 817 1.995376 ACGACCAAGAAAAGCCCAAT 58.005 45.000 0.00 0.00 0.00 3.16
833 835 2.997986 CAATCAAAGTAGGGTTACGCGT 59.002 45.455 19.17 19.17 34.88 6.01
846 848 1.787057 TACGCGTTTGCTGGGTTTGG 61.787 55.000 20.78 0.00 39.65 3.28
847 849 2.811799 GCGTTTGCTGGGTTTGGT 59.188 55.556 0.00 0.00 38.39 3.67
848 850 1.787057 CGCGTTTGCTGGGTTTGGTA 61.787 55.000 0.00 0.00 39.65 3.25
849 851 0.318360 GCGTTTGCTGGGTTTGGTAC 60.318 55.000 0.00 0.00 38.39 3.34
850 852 1.314730 CGTTTGCTGGGTTTGGTACT 58.685 50.000 0.00 0.00 0.00 2.73
851 853 1.679153 CGTTTGCTGGGTTTGGTACTT 59.321 47.619 0.00 0.00 0.00 2.24
852 854 2.100087 CGTTTGCTGGGTTTGGTACTTT 59.900 45.455 0.00 0.00 0.00 2.66
853 855 3.453424 GTTTGCTGGGTTTGGTACTTTG 58.547 45.455 0.00 0.00 0.00 2.77
890 895 0.171455 CCTCCGTCCGTTTCTCTCTG 59.829 60.000 0.00 0.00 0.00 3.35
931 940 3.755378 TGGTCGAGACTACAACCTAGAAC 59.245 47.826 3.09 0.00 32.82 3.01
932 941 3.181512 GGTCGAGACTACAACCTAGAACG 60.182 52.174 3.09 0.00 0.00 3.95
933 942 3.681897 GTCGAGACTACAACCTAGAACGA 59.318 47.826 0.00 0.00 0.00 3.85
934 943 3.931468 TCGAGACTACAACCTAGAACGAG 59.069 47.826 0.00 0.00 0.00 4.18
935 944 3.931468 CGAGACTACAACCTAGAACGAGA 59.069 47.826 0.00 0.00 0.00 4.04
936 945 4.391216 CGAGACTACAACCTAGAACGAGAA 59.609 45.833 0.00 0.00 0.00 2.87
937 946 5.106791 CGAGACTACAACCTAGAACGAGAAA 60.107 44.000 0.00 0.00 0.00 2.52
938 947 6.011476 AGACTACAACCTAGAACGAGAAAC 57.989 41.667 0.00 0.00 0.00 2.78
939 948 5.048154 AGACTACAACCTAGAACGAGAAACC 60.048 44.000 0.00 0.00 0.00 3.27
940 949 4.831710 ACTACAACCTAGAACGAGAAACCT 59.168 41.667 0.00 0.00 0.00 3.50
941 950 6.006449 ACTACAACCTAGAACGAGAAACCTA 58.994 40.000 0.00 0.00 0.00 3.08
942 951 5.388408 ACAACCTAGAACGAGAAACCTAG 57.612 43.478 0.00 0.00 0.00 3.02
943 952 5.075493 ACAACCTAGAACGAGAAACCTAGA 58.925 41.667 0.00 0.00 32.49 2.43
944 953 5.537674 ACAACCTAGAACGAGAAACCTAGAA 59.462 40.000 0.00 0.00 32.49 2.10
945 954 6.041296 ACAACCTAGAACGAGAAACCTAGAAA 59.959 38.462 0.00 0.00 32.49 2.52
946 955 6.661304 ACCTAGAACGAGAAACCTAGAAAA 57.339 37.500 0.00 0.00 32.49 2.29
947 956 7.059202 ACCTAGAACGAGAAACCTAGAAAAA 57.941 36.000 0.00 0.00 32.49 1.94
1240 1255 2.215942 CCTTTTTGGTTCGATCCCCT 57.784 50.000 10.02 0.00 0.00 4.79
1241 1256 1.818674 CCTTTTTGGTTCGATCCCCTG 59.181 52.381 10.02 0.00 0.00 4.45
1242 1257 2.514803 CTTTTTGGTTCGATCCCCTGT 58.485 47.619 10.02 0.00 0.00 4.00
1243 1258 2.668144 TTTTGGTTCGATCCCCTGTT 57.332 45.000 10.02 0.00 0.00 3.16
1244 1259 2.194201 TTTGGTTCGATCCCCTGTTC 57.806 50.000 10.02 0.00 0.00 3.18
1245 1260 0.036765 TTGGTTCGATCCCCTGTTCG 60.037 55.000 10.02 0.00 35.51 3.95
1252 1267 0.459759 GATCCCCTGTTCGTTCGTCC 60.460 60.000 0.00 0.00 0.00 4.79
1279 1294 4.527564 CGTCTCTGAAACGATTTTGCTTT 58.472 39.130 0.00 0.00 42.62 3.51
1287 1306 5.409826 TGAAACGATTTTGCTTTGTTGGTTT 59.590 32.000 0.00 0.00 0.00 3.27
1420 1455 2.207788 ATTTTGGTAACGCCGCCTGC 62.208 55.000 0.00 0.00 41.21 4.85
1502 1537 1.083806 TGATCGAGTGATTGTGCGGC 61.084 55.000 0.00 0.00 34.09 6.53
1504 1539 2.244117 ATCGAGTGATTGTGCGGCCT 62.244 55.000 0.00 0.00 0.00 5.19
1507 1542 1.009829 GAGTGATTGTGCGGCCTTAG 58.990 55.000 0.00 0.00 0.00 2.18
1510 1545 1.130561 GTGATTGTGCGGCCTTAGTTC 59.869 52.381 0.00 0.00 0.00 3.01
1513 1548 1.681538 TTGTGCGGCCTTAGTTCAAA 58.318 45.000 0.00 0.00 0.00 2.69
1514 1549 0.948678 TGTGCGGCCTTAGTTCAAAC 59.051 50.000 0.00 0.00 0.00 2.93
1516 1551 1.069227 GTGCGGCCTTAGTTCAAACTG 60.069 52.381 0.00 0.00 40.07 3.16
1517 1552 1.235724 GCGGCCTTAGTTCAAACTGT 58.764 50.000 0.00 0.00 40.07 3.55
1518 1553 1.069227 GCGGCCTTAGTTCAAACTGTG 60.069 52.381 0.00 0.00 40.07 3.66
1519 1554 2.489971 CGGCCTTAGTTCAAACTGTGA 58.510 47.619 0.00 0.00 40.07 3.58
1520 1555 2.223377 CGGCCTTAGTTCAAACTGTGAC 59.777 50.000 0.00 0.00 40.07 3.67
1521 1556 3.211045 GGCCTTAGTTCAAACTGTGACA 58.789 45.455 5.66 0.00 40.07 3.58
1522 1557 3.003378 GGCCTTAGTTCAAACTGTGACAC 59.997 47.826 5.66 0.00 40.07 3.67
1523 1558 3.877508 GCCTTAGTTCAAACTGTGACACT 59.122 43.478 7.20 0.00 40.07 3.55
1524 1559 4.335594 GCCTTAGTTCAAACTGTGACACTT 59.664 41.667 7.20 0.00 40.07 3.16
1525 1560 5.526111 GCCTTAGTTCAAACTGTGACACTTA 59.474 40.000 7.20 0.00 40.07 2.24
1526 1561 6.204882 GCCTTAGTTCAAACTGTGACACTTAT 59.795 38.462 7.20 0.00 40.07 1.73
1527 1562 7.255139 GCCTTAGTTCAAACTGTGACACTTATT 60.255 37.037 7.20 0.00 40.07 1.40
1528 1563 9.268268 CCTTAGTTCAAACTGTGACACTTATTA 57.732 33.333 7.20 0.00 40.07 0.98
1531 1566 8.099364 AGTTCAAACTGTGACACTTATTATGG 57.901 34.615 7.20 0.00 37.98 2.74
1532 1567 7.936847 AGTTCAAACTGTGACACTTATTATGGA 59.063 33.333 7.20 0.00 37.98 3.41
1533 1568 8.730680 GTTCAAACTGTGACACTTATTATGGAT 58.269 33.333 7.20 0.00 35.39 3.41
1534 1569 8.492673 TCAAACTGTGACACTTATTATGGATC 57.507 34.615 7.20 0.00 0.00 3.36
1535 1570 7.277760 TCAAACTGTGACACTTATTATGGATCG 59.722 37.037 7.20 0.00 0.00 3.69
1536 1571 5.601662 ACTGTGACACTTATTATGGATCGG 58.398 41.667 7.20 0.00 0.00 4.18
1537 1572 5.362717 ACTGTGACACTTATTATGGATCGGA 59.637 40.000 7.20 0.00 0.00 4.55
1538 1573 5.842907 TGTGACACTTATTATGGATCGGAG 58.157 41.667 7.20 0.00 0.00 4.63
1539 1574 5.221441 TGTGACACTTATTATGGATCGGAGG 60.221 44.000 7.20 0.00 0.00 4.30
1540 1575 4.283467 TGACACTTATTATGGATCGGAGGG 59.717 45.833 0.00 0.00 0.00 4.30
1541 1576 4.489737 ACACTTATTATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
1542 1577 4.528596 ACACTTATTATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
1565 1600 7.147949 GGAGTAGCTTAGATGTGTAGTTAACCA 60.148 40.741 0.88 0.00 0.00 3.67
1593 1630 1.828660 CGGGACAGCTAGGATCCGT 60.829 63.158 5.98 0.00 32.90 4.69
1625 1662 8.466617 TTCTGTTATTGCTTAAACCCTAACAA 57.533 30.769 0.00 0.00 31.05 2.83
1628 1665 9.353999 CTGTTATTGCTTAAACCCTAACAATTC 57.646 33.333 0.00 0.00 31.05 2.17
1641 1678 1.149101 ACAATTCCCCTGGACTGTGT 58.851 50.000 0.00 0.00 29.92 3.72
1648 1685 0.466189 CCCTGGACTGTGTTGTTGCT 60.466 55.000 0.00 0.00 0.00 3.91
1747 1785 8.467402 AATCTGTTGTAAATAGTCTTCTGTCG 57.533 34.615 0.00 0.00 36.34 4.35
1758 1796 1.412710 TCTTCTGTCGTGGGATATGCC 59.587 52.381 6.26 6.26 0.00 4.40
1804 1842 6.697019 GTGTATTCAGTTGTGCAAAAGTCAAT 59.303 34.615 0.00 0.00 0.00 2.57
1835 1873 1.583967 CGCGCTCTTGAGTACTCGG 60.584 63.158 17.85 12.86 0.00 4.63
1836 1874 1.226717 GCGCTCTTGAGTACTCGGG 60.227 63.158 17.85 12.53 0.00 5.14
1837 1875 1.433879 CGCTCTTGAGTACTCGGGG 59.566 63.158 17.85 13.62 0.00 5.73
1843 1881 0.834687 TTGAGTACTCGGGGCCAGTT 60.835 55.000 17.85 0.00 0.00 3.16
1854 1892 1.606601 GGCCAGTTGGGGAAAGACC 60.607 63.158 0.00 0.00 37.04 3.85
1865 1903 1.439679 GGAAAGACCGCGTTCTTGAT 58.560 50.000 20.06 4.88 35.92 2.57
1901 1939 1.389609 GGAAGATCGCCTCCCACGTA 61.390 60.000 0.00 0.00 0.00 3.57
1936 1980 1.718280 AGAAACCTCACTTCCCGACT 58.282 50.000 0.00 0.00 0.00 4.18
1940 1984 1.893786 CCTCACTTCCCGACTGAGG 59.106 63.158 0.00 0.00 43.98 3.86
1949 1994 2.214216 CCGACTGAGGAACCCCACA 61.214 63.158 0.00 0.00 33.88 4.17
1964 2009 1.152777 CACAAACCCTGACAGGCCA 60.153 57.895 16.72 0.00 32.73 5.36
2022 2068 2.715046 CCGGTGCCATGCAGATATAAT 58.285 47.619 0.00 0.00 40.08 1.28
2025 2071 3.424703 GGTGCCATGCAGATATAATGGT 58.575 45.455 2.42 0.00 42.44 3.55
2068 2115 1.720781 ACCAGCCCTGAAATTTGCTT 58.279 45.000 0.00 0.00 30.08 3.91
2070 2117 1.897802 CCAGCCCTGAAATTTGCTTCT 59.102 47.619 0.00 0.00 30.08 2.85
2101 2148 2.716017 GCGCTGGAGGTGCTACTCT 61.716 63.158 0.00 0.00 46.82 3.24
2112 2159 0.610174 TGCTACTCTGGAGCCACAAG 59.390 55.000 0.00 0.00 39.30 3.16
2139 2186 2.093447 CACTATGGACCCTTTCGCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
2201 2256 0.037975 CTTCTGCAAACCATGGGCAC 60.038 55.000 18.09 2.90 33.34 5.01
2208 2265 1.688197 CAAACCATGGGCACTTTGACT 59.312 47.619 18.09 0.00 0.00 3.41
2216 2273 1.963515 GGGCACTTTGACTTGGATGTT 59.036 47.619 0.00 0.00 0.00 2.71
2241 2303 7.874940 TGAAAACACATCAGTCTTTAGGATTG 58.125 34.615 0.00 0.00 33.65 2.67
2307 2369 5.431765 CATCTGGACTTATTAGTGGCACTT 58.568 41.667 27.24 11.55 33.84 3.16
2311 2373 2.608090 GACTTATTAGTGGCACTTCCGC 59.392 50.000 27.24 5.67 45.76 5.54
2389 2461 2.126888 GCCATTGCGACGGTTGTG 60.127 61.111 0.00 0.00 0.00 3.33
2392 2464 1.227999 CCATTGCGACGGTTGTGACT 61.228 55.000 0.00 0.00 0.00 3.41
2407 2479 1.476891 GTGACTGTGGCGGAGATTCTA 59.523 52.381 0.00 0.00 0.00 2.10
2443 2515 5.392767 TCGCTGTTGAGAAGAGTAAGAAT 57.607 39.130 0.00 0.00 0.00 2.40
2445 2517 5.184096 TCGCTGTTGAGAAGAGTAAGAATCT 59.816 40.000 0.00 0.00 0.00 2.40
2456 2528 8.487313 GAAGAGTAAGAATCTTCTTCTTTCCC 57.513 38.462 17.33 6.92 46.01 3.97
2464 2536 7.694093 AGAATCTTCTTCTTTCCCTGTAATGT 58.306 34.615 0.00 0.00 32.55 2.71
2468 2540 7.612677 TCTTCTTCTTTCCCTGTAATGTAGAC 58.387 38.462 0.00 0.00 0.00 2.59
2481 2553 8.633561 CCTGTAATGTAGACTATGTCTGATCAA 58.366 37.037 10.14 0.00 43.30 2.57
2485 2557 8.899427 AATGTAGACTATGTCTGATCAAATGG 57.101 34.615 10.14 0.00 43.30 3.16
2486 2558 7.423844 TGTAGACTATGTCTGATCAAATGGT 57.576 36.000 10.14 0.00 43.30 3.55
2487 2559 7.267857 TGTAGACTATGTCTGATCAAATGGTG 58.732 38.462 10.14 0.00 43.30 4.17
2488 2560 6.305272 AGACTATGTCTGATCAAATGGTGT 57.695 37.500 0.00 0.00 41.76 4.16
2489 2561 6.715280 AGACTATGTCTGATCAAATGGTGTT 58.285 36.000 0.00 0.00 41.76 3.32
2490 2562 6.596888 AGACTATGTCTGATCAAATGGTGTTG 59.403 38.462 0.00 0.00 41.76 3.33
2491 2563 6.240894 ACTATGTCTGATCAAATGGTGTTGT 58.759 36.000 0.00 0.00 0.00 3.32
2492 2564 6.716628 ACTATGTCTGATCAAATGGTGTTGTT 59.283 34.615 0.00 0.00 0.00 2.83
2493 2565 7.882791 ACTATGTCTGATCAAATGGTGTTGTTA 59.117 33.333 0.00 0.00 0.00 2.41
2494 2566 7.707624 ATGTCTGATCAAATGGTGTTGTTAT 57.292 32.000 0.00 0.00 0.00 1.89
2495 2567 6.912082 TGTCTGATCAAATGGTGTTGTTATG 58.088 36.000 0.00 0.00 0.00 1.90
2496 2568 5.801947 GTCTGATCAAATGGTGTTGTTATGC 59.198 40.000 0.00 0.00 0.00 3.14
2497 2569 4.731720 TGATCAAATGGTGTTGTTATGCG 58.268 39.130 0.00 0.00 0.00 4.73
2500 2572 5.188327 TCAAATGGTGTTGTTATGCGAAA 57.812 34.783 0.00 0.00 0.00 3.46
2501 2573 5.592054 TCAAATGGTGTTGTTATGCGAAAA 58.408 33.333 0.00 0.00 0.00 2.29
2502 2574 6.219473 TCAAATGGTGTTGTTATGCGAAAAT 58.781 32.000 0.00 0.00 0.00 1.82
2506 2578 3.987220 GGTGTTGTTATGCGAAAATTGCT 59.013 39.130 0.00 0.00 0.00 3.91
2508 2580 5.060446 GGTGTTGTTATGCGAAAATTGCTAC 59.940 40.000 0.00 0.00 0.00 3.58
2510 2582 4.671880 TGTTATGCGAAAATTGCTACGT 57.328 36.364 0.00 0.00 0.00 3.57
2511 2583 4.399112 TGTTATGCGAAAATTGCTACGTG 58.601 39.130 0.00 0.00 0.00 4.49
2512 2584 4.083749 TGTTATGCGAAAATTGCTACGTGT 60.084 37.500 0.00 0.00 0.00 4.49
2513 2585 2.308347 TGCGAAAATTGCTACGTGTG 57.692 45.000 0.00 0.00 0.00 3.82
2514 2586 1.867865 TGCGAAAATTGCTACGTGTGA 59.132 42.857 0.00 0.00 0.00 3.58
2517 2589 3.424302 GCGAAAATTGCTACGTGTGATCA 60.424 43.478 0.00 0.00 0.00 2.92
2518 2590 4.727734 GCGAAAATTGCTACGTGTGATCAT 60.728 41.667 0.00 0.00 0.00 2.45
2519 2591 4.725280 CGAAAATTGCTACGTGTGATCATG 59.275 41.667 0.00 0.00 36.71 3.07
2521 2593 6.441093 AAAATTGCTACGTGTGATCATGAT 57.559 33.333 8.25 8.25 34.90 2.45
2522 2594 5.663795 AATTGCTACGTGTGATCATGATC 57.336 39.130 25.91 25.91 38.29 2.92
2523 2595 3.799281 TGCTACGTGTGATCATGATCA 57.201 42.857 30.27 30.27 44.83 2.92
2532 2604 2.989909 TGATCATGATCAAACGGCTGT 58.010 42.857 31.46 0.00 44.14 4.40
2533 2605 2.679336 TGATCATGATCAAACGGCTGTG 59.321 45.455 31.46 0.00 44.14 3.66
2534 2606 0.804364 TCATGATCAAACGGCTGTGC 59.196 50.000 0.00 0.00 0.00 4.57
2535 2607 0.521867 CATGATCAAACGGCTGTGCG 60.522 55.000 0.00 0.00 0.00 5.34
2536 2608 1.647545 ATGATCAAACGGCTGTGCGG 61.648 55.000 0.00 0.00 35.02 5.69
2537 2609 3.039202 GATCAAACGGCTGTGCGGG 62.039 63.158 0.00 0.00 33.14 6.13
2571 2643 2.982130 CCTCCCAGGGAACGTCAG 59.018 66.667 10.32 0.00 0.00 3.51
2572 2644 2.266055 CTCCCAGGGAACGTCAGC 59.734 66.667 10.32 0.00 0.00 4.26
2573 2645 3.316573 CTCCCAGGGAACGTCAGCC 62.317 68.421 10.32 0.00 0.00 4.85
2574 2646 3.636231 CCCAGGGAACGTCAGCCA 61.636 66.667 0.00 0.00 0.00 4.75
2575 2647 2.046892 CCAGGGAACGTCAGCCAG 60.047 66.667 0.00 0.00 0.00 4.85
2576 2648 2.743718 CAGGGAACGTCAGCCAGT 59.256 61.111 0.00 0.00 0.00 4.00
2577 2649 1.071471 CAGGGAACGTCAGCCAGTT 59.929 57.895 0.00 0.00 0.00 3.16
2578 2650 0.320374 CAGGGAACGTCAGCCAGTTA 59.680 55.000 0.00 0.00 0.00 2.24
2579 2651 1.053424 AGGGAACGTCAGCCAGTTAA 58.947 50.000 0.00 0.00 0.00 2.01
2580 2652 1.154197 GGGAACGTCAGCCAGTTAAC 58.846 55.000 0.00 0.00 0.00 2.01
2581 2653 1.541670 GGGAACGTCAGCCAGTTAACA 60.542 52.381 8.61 0.00 0.00 2.41
2582 2654 2.423577 GGAACGTCAGCCAGTTAACAT 58.576 47.619 8.61 0.00 0.00 2.71
2583 2655 2.812011 GGAACGTCAGCCAGTTAACATT 59.188 45.455 8.61 0.00 0.00 2.71
2584 2656 3.998341 GGAACGTCAGCCAGTTAACATTA 59.002 43.478 8.61 0.00 0.00 1.90
2585 2657 4.142966 GGAACGTCAGCCAGTTAACATTAC 60.143 45.833 8.61 0.00 0.00 1.89
2586 2658 3.332034 ACGTCAGCCAGTTAACATTACC 58.668 45.455 8.61 0.00 0.00 2.85
2587 2659 2.347452 CGTCAGCCAGTTAACATTACCG 59.653 50.000 8.61 0.00 0.00 4.02
2628 2700 7.343357 TCTGAACTTTCCTCTTTTAACCTTGA 58.657 34.615 0.00 0.00 0.00 3.02
2654 2726 5.127194 GTGTGTAGAGATTAGGACATCCACA 59.873 44.000 0.00 0.00 38.89 4.17
2675 2747 6.094048 CCACAGTGGAAATAAATGACGAATCT 59.906 38.462 15.35 0.00 40.96 2.40
2705 2777 1.276138 CCATTCCAAAAGGCCAAGGTC 59.724 52.381 5.01 0.00 0.00 3.85
2711 2783 2.586425 CAAAAGGCCAAGGTCAGAGAA 58.414 47.619 5.01 0.00 0.00 2.87
2712 2784 2.555757 CAAAAGGCCAAGGTCAGAGAAG 59.444 50.000 5.01 0.00 0.00 2.85
2729 2818 4.096984 AGAGAAGAACAACAGTTTGGCTTG 59.903 41.667 0.00 0.00 37.00 4.01
2738 2827 2.689983 ACAGTTTGGCTTGTCTCTTTGG 59.310 45.455 0.00 0.00 0.00 3.28
2742 2831 1.032014 TGGCTTGTCTCTTTGGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
2745 2834 1.000938 GCTTGTCTCTTTGGTTGCCAG 60.001 52.381 0.00 0.00 33.81 4.85
2750 2841 1.064758 TCTCTTTGGTTGCCAGTGTGT 60.065 47.619 0.00 0.00 33.81 3.72
2753 2844 1.682854 CTTTGGTTGCCAGTGTGTCAT 59.317 47.619 0.00 0.00 33.81 3.06
2760 2851 2.497138 TGCCAGTGTGTCATTTCTCTG 58.503 47.619 0.00 0.00 0.00 3.35
2770 2861 7.879677 AGTGTGTCATTTCTCTGATGTATGAAA 59.120 33.333 0.00 0.00 33.74 2.69
2774 2865 8.606602 TGTCATTTCTCTGATGTATGAAATTCG 58.393 33.333 0.00 0.00 37.12 3.34
2784 2878 9.478019 CTGATGTATGAAATTCGACTTAACAAC 57.522 33.333 0.00 0.00 0.00 3.32
2795 2889 7.830940 TTCGACTTAACAACTAAAACTGACA 57.169 32.000 0.00 0.00 0.00 3.58
2796 2890 8.428186 TTCGACTTAACAACTAAAACTGACAT 57.572 30.769 0.00 0.00 0.00 3.06
2799 2893 7.042321 CGACTTAACAACTAAAACTGACATGGA 60.042 37.037 0.00 0.00 0.00 3.41
2800 2894 8.691661 ACTTAACAACTAAAACTGACATGGAT 57.308 30.769 0.00 0.00 0.00 3.41
2832 2926 3.737850 GCAGATTGAGATAGAGTTGGGG 58.262 50.000 0.00 0.00 0.00 4.96
2936 3030 4.944372 CCGTAGCGACCGCATCCC 62.944 72.222 16.97 0.51 44.88 3.85
2953 3047 3.202829 TCCCGTTGCTCTACTTTGTTT 57.797 42.857 0.00 0.00 0.00 2.83
2954 3048 3.135994 TCCCGTTGCTCTACTTTGTTTC 58.864 45.455 0.00 0.00 0.00 2.78
2975 3070 4.915704 TCCGCTGTTGTTTAAAACTTCAG 58.084 39.130 0.00 0.00 36.59 3.02
2986 3081 7.271511 TGTTTAAAACTTCAGAACCAATGCAT 58.728 30.769 0.00 0.00 0.00 3.96
3024 3119 7.558444 TGTGTCCCTGTTTAACTTGTATTTTCT 59.442 33.333 0.00 0.00 0.00 2.52
3060 3155 3.754850 TGTGAACTCTTTGGCAGATGATG 59.245 43.478 0.00 0.00 0.00 3.07
3078 3173 0.673333 TGAATCTGTTCCGCGTGCAT 60.673 50.000 4.92 0.00 33.26 3.96
3082 3177 0.665835 TCTGTTCCGCGTGCATTTTT 59.334 45.000 4.92 0.00 0.00 1.94
3128 3236 1.512926 ATCTTTTTCGCGTGTGCTCT 58.487 45.000 5.77 0.00 39.65 4.09
3130 3238 0.993746 CTTTTTCGCGTGTGCTCTGC 60.994 55.000 5.77 0.00 39.65 4.26
3138 3246 1.968540 GTGTGCTCTGCTTGGTCCC 60.969 63.158 0.00 0.00 0.00 4.46
3164 3276 5.597806 TCTGGTGGCTCTACGTTTATAATG 58.402 41.667 0.00 0.00 0.00 1.90
3173 3285 7.850982 GGCTCTACGTTTATAATGTTGTTGATG 59.149 37.037 0.00 0.00 0.00 3.07
3205 3317 3.455685 GCAAATGCAAGCGCTGTC 58.544 55.556 12.58 6.43 41.59 3.51
3244 3492 3.891366 AGTTTGGAATGTGAAAGTCTGGG 59.109 43.478 0.00 0.00 0.00 4.45
3385 3635 4.596311 TGCACAGCAGATACACGG 57.404 55.556 0.00 0.00 33.32 4.94
3392 3642 2.271800 CAGCAGATACACGGGAGAAAC 58.728 52.381 0.00 0.00 0.00 2.78
3833 4099 3.181467 CCTCTAGCTGCTCTGCTATTGTT 60.181 47.826 4.91 0.00 43.54 2.83
3859 4127 1.915489 ACATCAGCCATGGACCAAGTA 59.085 47.619 18.40 0.00 36.72 2.24
3861 4129 3.144506 CATCAGCCATGGACCAAGTATC 58.855 50.000 18.40 0.00 0.00 2.24
3871 4139 6.405065 CCATGGACCAAGTATCAGAAATGTTG 60.405 42.308 5.56 0.00 0.00 3.33
3874 4142 6.016360 TGGACCAAGTATCAGAAATGTTGTTG 60.016 38.462 0.00 0.00 0.00 3.33
3875 4143 5.772521 ACCAAGTATCAGAAATGTTGTTGC 58.227 37.500 0.00 0.00 0.00 4.17
3876 4144 5.536161 ACCAAGTATCAGAAATGTTGTTGCT 59.464 36.000 0.00 0.00 0.00 3.91
3886 4156 1.360192 GTTGTTGCTGTGCAGGTCC 59.640 57.895 1.11 0.00 40.61 4.46
3901 4171 3.055819 GCAGGTCCTACATCAAGTCTGAA 60.056 47.826 0.00 0.00 34.49 3.02
3902 4172 4.753233 CAGGTCCTACATCAAGTCTGAAG 58.247 47.826 0.00 0.00 34.49 3.02
3903 4173 3.196685 AGGTCCTACATCAAGTCTGAAGC 59.803 47.826 0.00 0.00 34.49 3.86
3904 4174 3.196685 GGTCCTACATCAAGTCTGAAGCT 59.803 47.826 0.00 0.00 34.49 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.604875 TCGTAGTTTGATTCCTCACCC 57.395 47.619 0.00 0.00 0.00 4.61
1 2 3.683340 GGTTCGTAGTTTGATTCCTCACC 59.317 47.826 0.00 0.00 0.00 4.02
2 3 4.566987 AGGTTCGTAGTTTGATTCCTCAC 58.433 43.478 0.00 0.00 0.00 3.51
3 4 4.884668 AGGTTCGTAGTTTGATTCCTCA 57.115 40.909 0.00 0.00 0.00 3.86
4 5 5.686397 CGATAGGTTCGTAGTTTGATTCCTC 59.314 44.000 0.00 0.00 43.01 3.71
5 6 5.589192 CGATAGGTTCGTAGTTTGATTCCT 58.411 41.667 0.00 0.00 43.01 3.36
6 7 5.885020 CGATAGGTTCGTAGTTTGATTCC 57.115 43.478 0.00 0.00 43.01 3.01
22 23 2.826128 TGGTAGGATTAGCAGCGATAGG 59.174 50.000 0.00 0.00 32.62 2.57
23 24 4.103365 CTGGTAGGATTAGCAGCGATAG 57.897 50.000 1.40 0.00 45.31 2.08
30 31 1.971357 GGCTAGCTGGTAGGATTAGCA 59.029 52.381 15.72 0.00 39.84 3.49
31 32 1.971357 TGGCTAGCTGGTAGGATTAGC 59.029 52.381 15.72 2.51 36.80 3.09
32 33 3.006323 CAGTGGCTAGCTGGTAGGATTAG 59.994 52.174 15.72 0.00 0.00 1.73
33 34 2.965831 CAGTGGCTAGCTGGTAGGATTA 59.034 50.000 15.72 0.00 0.00 1.75
34 35 1.765314 CAGTGGCTAGCTGGTAGGATT 59.235 52.381 15.72 0.00 0.00 3.01
35 36 1.343478 ACAGTGGCTAGCTGGTAGGAT 60.343 52.381 15.72 0.00 38.22 3.24
36 37 0.041238 ACAGTGGCTAGCTGGTAGGA 59.959 55.000 15.72 0.00 38.22 2.94
37 38 1.776662 TACAGTGGCTAGCTGGTAGG 58.223 55.000 15.72 2.58 38.22 3.18
38 39 2.761208 AGTTACAGTGGCTAGCTGGTAG 59.239 50.000 15.72 9.46 38.22 3.18
39 40 2.816411 AGTTACAGTGGCTAGCTGGTA 58.184 47.619 15.72 9.13 38.22 3.25
40 41 1.645710 AGTTACAGTGGCTAGCTGGT 58.354 50.000 15.72 10.09 38.22 4.00
41 42 2.289694 ACAAGTTACAGTGGCTAGCTGG 60.290 50.000 15.72 0.00 38.22 4.85
42 43 3.045601 ACAAGTTACAGTGGCTAGCTG 57.954 47.619 15.72 7.84 39.67 4.24
43 44 4.822026 CTTACAAGTTACAGTGGCTAGCT 58.178 43.478 15.72 0.00 0.00 3.32
44 45 3.371285 GCTTACAAGTTACAGTGGCTAGC 59.629 47.826 6.04 6.04 0.00 3.42
45 46 4.822026 AGCTTACAAGTTACAGTGGCTAG 58.178 43.478 0.00 0.00 0.00 3.42
46 47 4.884668 AGCTTACAAGTTACAGTGGCTA 57.115 40.909 0.00 0.00 0.00 3.93
47 48 3.771577 AGCTTACAAGTTACAGTGGCT 57.228 42.857 0.00 0.00 0.00 4.75
48 49 3.120649 CGAAGCTTACAAGTTACAGTGGC 60.121 47.826 0.00 0.00 0.00 5.01
49 50 3.432252 CCGAAGCTTACAAGTTACAGTGG 59.568 47.826 0.00 0.00 0.00 4.00
50 51 4.056050 ACCGAAGCTTACAAGTTACAGTG 58.944 43.478 0.00 0.00 0.00 3.66
51 52 4.056050 CACCGAAGCTTACAAGTTACAGT 58.944 43.478 0.00 0.00 0.00 3.55
52 53 4.056050 ACACCGAAGCTTACAAGTTACAG 58.944 43.478 0.00 0.00 0.00 2.74
53 54 4.053295 GACACCGAAGCTTACAAGTTACA 58.947 43.478 0.00 0.00 0.00 2.41
54 55 3.431233 GGACACCGAAGCTTACAAGTTAC 59.569 47.826 0.00 0.00 0.00 2.50
55 56 3.069872 TGGACACCGAAGCTTACAAGTTA 59.930 43.478 0.00 0.00 0.00 2.24
56 57 2.158871 TGGACACCGAAGCTTACAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
57 58 1.414919 TGGACACCGAAGCTTACAAGT 59.585 47.619 0.00 0.00 0.00 3.16
58 59 2.163818 TGGACACCGAAGCTTACAAG 57.836 50.000 0.00 0.00 0.00 3.16
59 60 2.623878 TTGGACACCGAAGCTTACAA 57.376 45.000 0.00 0.00 0.00 2.41
60 61 2.623878 TTTGGACACCGAAGCTTACA 57.376 45.000 0.00 0.00 0.00 2.41
61 62 3.621715 CCTATTTGGACACCGAAGCTTAC 59.378 47.826 0.00 0.00 38.35 2.34
62 63 3.869065 CCTATTTGGACACCGAAGCTTA 58.131 45.455 0.00 0.00 38.35 3.09
63 64 2.711542 CCTATTTGGACACCGAAGCTT 58.288 47.619 0.00 0.00 38.35 3.74
64 65 1.679032 GCCTATTTGGACACCGAAGCT 60.679 52.381 0.00 0.00 38.35 3.74
65 66 0.733150 GCCTATTTGGACACCGAAGC 59.267 55.000 0.00 0.00 38.35 3.86
66 67 2.009774 CTGCCTATTTGGACACCGAAG 58.990 52.381 0.00 0.00 38.35 3.79
67 68 1.948611 GCTGCCTATTTGGACACCGAA 60.949 52.381 0.00 0.00 38.35 4.30
68 69 0.392461 GCTGCCTATTTGGACACCGA 60.392 55.000 0.00 0.00 38.35 4.69
69 70 1.705337 CGCTGCCTATTTGGACACCG 61.705 60.000 0.00 0.00 38.35 4.94
70 71 0.676782 ACGCTGCCTATTTGGACACC 60.677 55.000 0.00 0.00 38.35 4.16
71 72 0.447801 CACGCTGCCTATTTGGACAC 59.552 55.000 0.00 0.00 38.35 3.67
72 73 0.676466 CCACGCTGCCTATTTGGACA 60.676 55.000 0.00 0.00 38.35 4.02
73 74 1.376609 CCCACGCTGCCTATTTGGAC 61.377 60.000 0.00 0.00 38.35 4.02
74 75 1.077787 CCCACGCTGCCTATTTGGA 60.078 57.895 0.00 0.00 38.35 3.53
75 76 2.120909 CCCCACGCTGCCTATTTGG 61.121 63.158 0.00 0.00 39.35 3.28
76 77 0.466189 ATCCCCACGCTGCCTATTTG 60.466 55.000 0.00 0.00 0.00 2.32
77 78 1.136828 TATCCCCACGCTGCCTATTT 58.863 50.000 0.00 0.00 0.00 1.40
78 79 1.362224 ATATCCCCACGCTGCCTATT 58.638 50.000 0.00 0.00 0.00 1.73
79 80 2.247699 TATATCCCCACGCTGCCTAT 57.752 50.000 0.00 0.00 0.00 2.57
80 81 2.018355 TTATATCCCCACGCTGCCTA 57.982 50.000 0.00 0.00 0.00 3.93
81 82 1.136828 TTTATATCCCCACGCTGCCT 58.863 50.000 0.00 0.00 0.00 4.75
82 83 1.975660 TTTTATATCCCCACGCTGCC 58.024 50.000 0.00 0.00 0.00 4.85
83 84 2.949644 AGTTTTTATATCCCCACGCTGC 59.050 45.455 0.00 0.00 0.00 5.25
84 85 7.360946 GCTTATAGTTTTTATATCCCCACGCTG 60.361 40.741 0.00 0.00 0.00 5.18
85 86 6.653740 GCTTATAGTTTTTATATCCCCACGCT 59.346 38.462 0.00 0.00 0.00 5.07
86 87 6.128090 GGCTTATAGTTTTTATATCCCCACGC 60.128 42.308 0.00 0.00 0.00 5.34
87 88 6.373495 GGGCTTATAGTTTTTATATCCCCACG 59.627 42.308 0.00 0.00 0.00 4.94
88 89 6.662234 GGGGCTTATAGTTTTTATATCCCCAC 59.338 42.308 17.47 1.72 39.71 4.61
89 90 6.522804 CGGGGCTTATAGTTTTTATATCCCCA 60.523 42.308 19.87 0.00 39.81 4.96
90 91 5.884232 CGGGGCTTATAGTTTTTATATCCCC 59.116 44.000 14.76 14.76 38.27 4.81
91 92 6.714278 TCGGGGCTTATAGTTTTTATATCCC 58.286 40.000 0.00 0.00 0.00 3.85
92 93 9.543783 CTATCGGGGCTTATAGTTTTTATATCC 57.456 37.037 0.00 0.00 0.00 2.59
98 99 9.856162 TTAAATCTATCGGGGCTTATAGTTTTT 57.144 29.630 11.70 9.93 33.17 1.94
99 100 9.856162 TTTAAATCTATCGGGGCTTATAGTTTT 57.144 29.630 0.00 0.00 34.42 2.43
100 101 9.281371 GTTTAAATCTATCGGGGCTTATAGTTT 57.719 33.333 0.00 0.00 0.00 2.66
101 102 8.434392 TGTTTAAATCTATCGGGGCTTATAGTT 58.566 33.333 0.00 0.00 0.00 2.24
102 103 7.970102 TGTTTAAATCTATCGGGGCTTATAGT 58.030 34.615 0.00 0.00 0.00 2.12
103 104 9.449719 AATGTTTAAATCTATCGGGGCTTATAG 57.550 33.333 0.00 0.00 0.00 1.31
104 105 9.802039 AAATGTTTAAATCTATCGGGGCTTATA 57.198 29.630 0.00 0.00 0.00 0.98
105 106 8.706322 AAATGTTTAAATCTATCGGGGCTTAT 57.294 30.769 0.00 0.00 0.00 1.73
106 107 8.528044 AAAATGTTTAAATCTATCGGGGCTTA 57.472 30.769 0.00 0.00 0.00 3.09
107 108 7.418337 AAAATGTTTAAATCTATCGGGGCTT 57.582 32.000 0.00 0.00 0.00 4.35
108 109 7.123547 TCAAAAATGTTTAAATCTATCGGGGCT 59.876 33.333 0.00 0.00 0.00 5.19
109 110 7.262048 TCAAAAATGTTTAAATCTATCGGGGC 58.738 34.615 0.00 0.00 0.00 5.80
110 111 9.646427 TTTCAAAAATGTTTAAATCTATCGGGG 57.354 29.630 0.00 0.00 0.00 5.73
218 219 6.927294 TTCCCAAAATATGTTTGCGTTTTT 57.073 29.167 0.00 0.00 0.00 1.94
219 220 6.934083 AGATTCCCAAAATATGTTTGCGTTTT 59.066 30.769 0.00 0.00 0.00 2.43
220 221 6.463360 AGATTCCCAAAATATGTTTGCGTTT 58.537 32.000 0.00 0.00 0.00 3.60
221 222 6.036577 AGATTCCCAAAATATGTTTGCGTT 57.963 33.333 0.00 0.00 0.00 4.84
222 223 5.659440 AGATTCCCAAAATATGTTTGCGT 57.341 34.783 0.00 0.00 0.00 5.24
223 224 6.098679 TCAAGATTCCCAAAATATGTTTGCG 58.901 36.000 0.00 0.00 0.00 4.85
224 225 8.496707 AATCAAGATTCCCAAAATATGTTTGC 57.503 30.769 0.00 0.00 0.00 3.68
305 306 9.708092 CAAAAATGCAAAAATAAATTGGGGAAT 57.292 25.926 0.00 0.00 0.00 3.01
306 307 8.917088 TCAAAAATGCAAAAATAAATTGGGGAA 58.083 25.926 0.00 0.00 0.00 3.97
307 308 8.469309 TCAAAAATGCAAAAATAAATTGGGGA 57.531 26.923 0.00 0.00 0.00 4.81
308 309 8.976471 GTTCAAAAATGCAAAAATAAATTGGGG 58.024 29.630 0.00 0.00 0.00 4.96
309 310 9.525409 TGTTCAAAAATGCAAAAATAAATTGGG 57.475 25.926 0.00 0.00 0.00 4.12
369 370 8.452989 AATGCTCATGTTTTCGAAATACTTTC 57.547 30.769 12.12 0.10 36.32 2.62
370 371 8.816640 AAATGCTCATGTTTTCGAAATACTTT 57.183 26.923 12.12 5.36 0.00 2.66
371 372 8.816640 AAAATGCTCATGTTTTCGAAATACTT 57.183 26.923 12.12 8.26 0.00 2.24
372 373 8.816640 AAAAATGCTCATGTTTTCGAAATACT 57.183 26.923 12.12 0.00 0.00 2.12
380 381 6.710692 ATTCCGAAAAATGCTCATGTTTTC 57.289 33.333 7.91 7.91 37.71 2.29
381 382 6.147656 GGAATTCCGAAAAATGCTCATGTTTT 59.852 34.615 9.17 0.00 28.83 2.43
382 383 5.639082 GGAATTCCGAAAAATGCTCATGTTT 59.361 36.000 9.17 0.00 31.23 2.83
383 384 5.047092 AGGAATTCCGAAAAATGCTCATGTT 60.047 36.000 18.82 0.00 42.08 2.71
384 385 4.463891 AGGAATTCCGAAAAATGCTCATGT 59.536 37.500 18.82 0.00 42.08 3.21
385 386 5.002464 AGGAATTCCGAAAAATGCTCATG 57.998 39.130 18.82 0.00 42.08 3.07
386 387 6.773976 TTAGGAATTCCGAAAAATGCTCAT 57.226 33.333 18.82 0.00 42.08 2.90
387 388 6.432783 TCTTTAGGAATTCCGAAAAATGCTCA 59.567 34.615 26.50 8.53 39.52 4.26
388 389 6.852664 TCTTTAGGAATTCCGAAAAATGCTC 58.147 36.000 26.50 0.00 39.52 4.26
389 390 6.834168 TCTTTAGGAATTCCGAAAAATGCT 57.166 33.333 26.50 8.01 39.52 3.79
390 391 8.479313 AAATCTTTAGGAATTCCGAAAAATGC 57.521 30.769 26.50 0.13 39.52 3.56
501 502 9.914131 GAACTTAGGATTCAAAATTGTTAGCTT 57.086 29.630 0.00 0.00 0.00 3.74
502 503 9.301897 AGAACTTAGGATTCAAAATTGTTAGCT 57.698 29.630 0.00 0.00 0.00 3.32
503 504 9.914131 AAGAACTTAGGATTCAAAATTGTTAGC 57.086 29.630 0.00 0.00 0.00 3.09
511 512 9.862149 AGAGGTAAAAGAACTTAGGATTCAAAA 57.138 29.630 0.00 0.00 0.00 2.44
512 513 9.284968 CAGAGGTAAAAGAACTTAGGATTCAAA 57.715 33.333 0.00 0.00 0.00 2.69
513 514 8.656806 TCAGAGGTAAAAGAACTTAGGATTCAA 58.343 33.333 0.00 0.00 0.00 2.69
514 515 8.202461 TCAGAGGTAAAAGAACTTAGGATTCA 57.798 34.615 0.00 0.00 0.00 2.57
515 516 9.674068 AATCAGAGGTAAAAGAACTTAGGATTC 57.326 33.333 0.00 0.00 0.00 2.52
517 518 9.454859 CAAATCAGAGGTAAAAGAACTTAGGAT 57.545 33.333 0.00 0.00 0.00 3.24
518 519 8.437575 ACAAATCAGAGGTAAAAGAACTTAGGA 58.562 33.333 0.00 0.00 0.00 2.94
519 520 8.622948 ACAAATCAGAGGTAAAAGAACTTAGG 57.377 34.615 0.00 0.00 0.00 2.69
522 523 9.586435 CAAAACAAATCAGAGGTAAAAGAACTT 57.414 29.630 0.00 0.00 0.00 2.66
523 524 8.966868 TCAAAACAAATCAGAGGTAAAAGAACT 58.033 29.630 0.00 0.00 0.00 3.01
524 525 9.581099 TTCAAAACAAATCAGAGGTAAAAGAAC 57.419 29.630 0.00 0.00 0.00 3.01
532 533 9.447157 TCAAAATTTTCAAAACAAATCAGAGGT 57.553 25.926 0.00 0.00 0.00 3.85
550 551 9.133627 CCGGTTTTCAAAATTTGTTCAAAATTT 57.866 25.926 5.56 4.16 40.41 1.82
551 552 7.274468 GCCGGTTTTCAAAATTTGTTCAAAATT 59.726 29.630 1.90 0.00 0.00 1.82
552 553 6.749578 GCCGGTTTTCAAAATTTGTTCAAAAT 59.250 30.769 1.90 0.00 0.00 1.82
553 554 6.086871 GCCGGTTTTCAAAATTTGTTCAAAA 58.913 32.000 1.90 3.11 0.00 2.44
554 555 5.181245 TGCCGGTTTTCAAAATTTGTTCAAA 59.819 32.000 1.90 0.44 0.00 2.69
555 556 4.695455 TGCCGGTTTTCAAAATTTGTTCAA 59.305 33.333 1.90 0.00 0.00 2.69
556 557 4.093556 GTGCCGGTTTTCAAAATTTGTTCA 59.906 37.500 1.90 0.00 0.00 3.18
557 558 4.093556 TGTGCCGGTTTTCAAAATTTGTTC 59.906 37.500 1.90 0.00 0.00 3.18
558 559 4.003648 TGTGCCGGTTTTCAAAATTTGTT 58.996 34.783 1.90 0.00 0.00 2.83
559 560 3.600388 TGTGCCGGTTTTCAAAATTTGT 58.400 36.364 1.90 0.00 0.00 2.83
560 561 4.809815 ATGTGCCGGTTTTCAAAATTTG 57.190 36.364 1.90 0.00 0.00 2.32
561 562 5.826601 AAATGTGCCGGTTTTCAAAATTT 57.173 30.435 1.90 0.11 0.00 1.82
562 563 5.826601 AAAATGTGCCGGTTTTCAAAATT 57.173 30.435 1.90 0.00 0.00 1.82
563 564 5.826601 AAAAATGTGCCGGTTTTCAAAAT 57.173 30.435 1.90 0.00 0.00 1.82
648 649 9.423061 GGTAAGCAATCAACTATTCAAAAATGT 57.577 29.630 0.00 0.00 0.00 2.71
649 650 9.421806 TGGTAAGCAATCAACTATTCAAAAATG 57.578 29.630 0.00 0.00 0.00 2.32
650 651 9.423061 GTGGTAAGCAATCAACTATTCAAAAAT 57.577 29.630 0.00 0.00 0.00 1.82
651 652 8.417106 TGTGGTAAGCAATCAACTATTCAAAAA 58.583 29.630 0.00 0.00 0.00 1.94
652 653 7.946207 TGTGGTAAGCAATCAACTATTCAAAA 58.054 30.769 0.00 0.00 0.00 2.44
653 654 7.517614 TGTGGTAAGCAATCAACTATTCAAA 57.482 32.000 0.00 0.00 0.00 2.69
654 655 7.701539 ATGTGGTAAGCAATCAACTATTCAA 57.298 32.000 0.00 0.00 0.00 2.69
655 656 8.839343 CATATGTGGTAAGCAATCAACTATTCA 58.161 33.333 0.00 0.00 0.00 2.57
656 657 8.840321 ACATATGTGGTAAGCAATCAACTATTC 58.160 33.333 7.78 0.00 0.00 1.75
657 658 8.623903 CACATATGTGGTAAGCAATCAACTATT 58.376 33.333 25.41 0.00 42.10 1.73
658 659 8.158169 CACATATGTGGTAAGCAATCAACTAT 57.842 34.615 25.41 0.00 42.10 2.12
659 660 7.552458 CACATATGTGGTAAGCAATCAACTA 57.448 36.000 25.41 0.00 42.10 2.24
660 661 6.441093 CACATATGTGGTAAGCAATCAACT 57.559 37.500 25.41 0.00 42.10 3.16
675 676 9.905713 ATCTATTTTACCAAGTGACACATATGT 57.094 29.630 8.59 1.41 43.71 2.29
677 678 9.905713 ACATCTATTTTACCAAGTGACACATAT 57.094 29.630 8.59 0.00 0.00 1.78
678 679 9.161629 CACATCTATTTTACCAAGTGACACATA 57.838 33.333 8.59 0.00 0.00 2.29
679 680 7.882791 TCACATCTATTTTACCAAGTGACACAT 59.117 33.333 8.59 0.00 30.64 3.21
680 681 7.220740 TCACATCTATTTTACCAAGTGACACA 58.779 34.615 8.59 0.00 30.64 3.72
681 682 7.667043 TCACATCTATTTTACCAAGTGACAC 57.333 36.000 0.00 0.00 30.64 3.67
682 683 9.952030 TTATCACATCTATTTTACCAAGTGACA 57.048 29.630 0.00 0.00 37.55 3.58
713 714 9.040939 CCATTTTTCCGTATCTGTTTTTCTTTT 57.959 29.630 0.00 0.00 0.00 2.27
714 715 8.417884 TCCATTTTTCCGTATCTGTTTTTCTTT 58.582 29.630 0.00 0.00 0.00 2.52
715 716 7.947282 TCCATTTTTCCGTATCTGTTTTTCTT 58.053 30.769 0.00 0.00 0.00 2.52
716 717 7.519032 TCCATTTTTCCGTATCTGTTTTTCT 57.481 32.000 0.00 0.00 0.00 2.52
717 718 8.582433 TTTCCATTTTTCCGTATCTGTTTTTC 57.418 30.769 0.00 0.00 0.00 2.29
718 719 8.822855 GTTTTCCATTTTTCCGTATCTGTTTTT 58.177 29.630 0.00 0.00 0.00 1.94
719 720 7.982354 TGTTTTCCATTTTTCCGTATCTGTTTT 59.018 29.630 0.00 0.00 0.00 2.43
720 721 7.493367 TGTTTTCCATTTTTCCGTATCTGTTT 58.507 30.769 0.00 0.00 0.00 2.83
721 722 7.045126 TGTTTTCCATTTTTCCGTATCTGTT 57.955 32.000 0.00 0.00 0.00 3.16
722 723 6.294508 CCTGTTTTCCATTTTTCCGTATCTGT 60.295 38.462 0.00 0.00 0.00 3.41
723 724 6.092748 CCTGTTTTCCATTTTTCCGTATCTG 58.907 40.000 0.00 0.00 0.00 2.90
724 725 5.336451 GCCTGTTTTCCATTTTTCCGTATCT 60.336 40.000 0.00 0.00 0.00 1.98
725 726 4.862574 GCCTGTTTTCCATTTTTCCGTATC 59.137 41.667 0.00 0.00 0.00 2.24
726 727 4.322424 GGCCTGTTTTCCATTTTTCCGTAT 60.322 41.667 0.00 0.00 0.00 3.06
727 728 3.006003 GGCCTGTTTTCCATTTTTCCGTA 59.994 43.478 0.00 0.00 0.00 4.02
728 729 2.224185 GGCCTGTTTTCCATTTTTCCGT 60.224 45.455 0.00 0.00 0.00 4.69
729 730 2.412870 GGCCTGTTTTCCATTTTTCCG 58.587 47.619 0.00 0.00 0.00 4.30
730 731 2.412870 CGGCCTGTTTTCCATTTTTCC 58.587 47.619 0.00 0.00 0.00 3.13
731 732 2.412870 CCGGCCTGTTTTCCATTTTTC 58.587 47.619 0.00 0.00 0.00 2.29
732 733 1.071542 CCCGGCCTGTTTTCCATTTTT 59.928 47.619 0.00 0.00 0.00 1.94
733 734 0.684535 CCCGGCCTGTTTTCCATTTT 59.315 50.000 0.00 0.00 0.00 1.82
734 735 1.826340 GCCCGGCCTGTTTTCCATTT 61.826 55.000 0.00 0.00 0.00 2.32
735 736 2.282783 GCCCGGCCTGTTTTCCATT 61.283 57.895 0.00 0.00 0.00 3.16
736 737 2.679996 GCCCGGCCTGTTTTCCAT 60.680 61.111 0.00 0.00 0.00 3.41
737 738 4.986708 GGCCCGGCCTGTTTTCCA 62.987 66.667 22.31 0.00 46.69 3.53
747 748 4.937431 GCTGTATCCTGGCCCGGC 62.937 72.222 8.65 0.00 0.00 6.13
748 749 3.164269 AGCTGTATCCTGGCCCGG 61.164 66.667 6.92 6.92 0.00 5.73
749 750 2.093537 GAGAGCTGTATCCTGGCCCG 62.094 65.000 0.00 0.00 0.00 6.13
750 751 1.751563 GAGAGCTGTATCCTGGCCC 59.248 63.158 0.00 0.00 0.00 5.80
751 752 1.365633 CGAGAGCTGTATCCTGGCC 59.634 63.158 0.00 0.00 0.00 5.36
774 775 3.652000 GCCGGCCGACGTGAAAAA 61.652 61.111 30.73 0.00 42.24 1.94
815 817 2.801679 CAAACGCGTAACCCTACTTTGA 59.198 45.455 14.46 0.00 28.90 2.69
833 835 2.159028 GCAAAGTACCAAACCCAGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
846 848 5.120363 CGAAGGAAGAAGGTAAGCAAAGTAC 59.880 44.000 0.00 0.00 0.00 2.73
847 849 5.235516 CGAAGGAAGAAGGTAAGCAAAGTA 58.764 41.667 0.00 0.00 0.00 2.24
848 850 4.065789 CGAAGGAAGAAGGTAAGCAAAGT 58.934 43.478 0.00 0.00 0.00 2.66
849 851 3.120165 GCGAAGGAAGAAGGTAAGCAAAG 60.120 47.826 0.00 0.00 0.00 2.77
850 852 2.812011 GCGAAGGAAGAAGGTAAGCAAA 59.188 45.455 0.00 0.00 0.00 3.68
851 853 2.423577 GCGAAGGAAGAAGGTAAGCAA 58.576 47.619 0.00 0.00 0.00 3.91
852 854 1.338769 GGCGAAGGAAGAAGGTAAGCA 60.339 52.381 0.00 0.00 0.00 3.91
853 855 1.066071 AGGCGAAGGAAGAAGGTAAGC 60.066 52.381 0.00 0.00 0.00 3.09
948 957 5.163713 GCAAAGCTAGATCGACAGGATTTTT 60.164 40.000 0.00 0.00 34.82 1.94
956 965 0.806102 GCCGCAAAGCTAGATCGACA 60.806 55.000 0.00 0.00 0.00 4.35
957 966 1.812214 CGCCGCAAAGCTAGATCGAC 61.812 60.000 0.00 0.00 0.00 4.20
984 998 0.896940 CCATGAGTGCTGGCTGGTTT 60.897 55.000 0.00 0.00 0.00 3.27
986 1000 2.353958 CCATGAGTGCTGGCTGGT 59.646 61.111 0.00 0.00 0.00 4.00
1252 1267 3.827784 CGTTTCAGAGACGGCGCG 61.828 66.667 6.90 0.00 36.90 6.86
1279 1294 1.895798 TCTGCAACCAACAAACCAACA 59.104 42.857 0.00 0.00 0.00 3.33
1287 1306 3.278574 GCATATACCTCTGCAACCAACA 58.721 45.455 0.00 0.00 38.28 3.33
1461 1496 2.096481 TTCGCGAAAACACGAGGCAC 62.096 55.000 21.14 0.00 39.81 5.01
1502 1537 7.730364 ATAAGTGTCACAGTTTGAACTAAGG 57.270 36.000 2.42 0.00 37.08 2.69
1507 1542 8.094798 TCCATAATAAGTGTCACAGTTTGAAC 57.905 34.615 2.42 0.00 35.39 3.18
1510 1545 7.401860 CGATCCATAATAAGTGTCACAGTTTG 58.598 38.462 2.42 0.00 0.00 2.93
1513 1548 5.362717 TCCGATCCATAATAAGTGTCACAGT 59.637 40.000 5.62 0.00 0.00 3.55
1514 1549 5.842907 TCCGATCCATAATAAGTGTCACAG 58.157 41.667 5.62 0.00 0.00 3.66
1516 1551 5.230942 CCTCCGATCCATAATAAGTGTCAC 58.769 45.833 0.00 0.00 0.00 3.67
1517 1552 4.283467 CCCTCCGATCCATAATAAGTGTCA 59.717 45.833 0.00 0.00 0.00 3.58
1518 1553 4.527038 TCCCTCCGATCCATAATAAGTGTC 59.473 45.833 0.00 0.00 0.00 3.67
1519 1554 4.489737 TCCCTCCGATCCATAATAAGTGT 58.510 43.478 0.00 0.00 0.00 3.55
1520 1555 4.528596 ACTCCCTCCGATCCATAATAAGTG 59.471 45.833 0.00 0.00 0.00 3.16
1521 1556 4.753186 ACTCCCTCCGATCCATAATAAGT 58.247 43.478 0.00 0.00 0.00 2.24
1522 1557 5.163499 GCTACTCCCTCCGATCCATAATAAG 60.163 48.000 0.00 0.00 0.00 1.73
1523 1558 4.710375 GCTACTCCCTCCGATCCATAATAA 59.290 45.833 0.00 0.00 0.00 1.40
1524 1559 4.017407 AGCTACTCCCTCCGATCCATAATA 60.017 45.833 0.00 0.00 0.00 0.98
1525 1560 3.100671 GCTACTCCCTCCGATCCATAAT 58.899 50.000 0.00 0.00 0.00 1.28
1526 1561 2.110188 AGCTACTCCCTCCGATCCATAA 59.890 50.000 0.00 0.00 0.00 1.90
1527 1562 1.711375 AGCTACTCCCTCCGATCCATA 59.289 52.381 0.00 0.00 0.00 2.74
1528 1563 0.485099 AGCTACTCCCTCCGATCCAT 59.515 55.000 0.00 0.00 0.00 3.41
1529 1564 0.261991 AAGCTACTCCCTCCGATCCA 59.738 55.000 0.00 0.00 0.00 3.41
1530 1565 2.164338 CTAAGCTACTCCCTCCGATCC 58.836 57.143 0.00 0.00 0.00 3.36
1531 1566 3.143211 TCTAAGCTACTCCCTCCGATC 57.857 52.381 0.00 0.00 0.00 3.69
1532 1567 3.181427 ACATCTAAGCTACTCCCTCCGAT 60.181 47.826 0.00 0.00 0.00 4.18
1533 1568 2.175069 ACATCTAAGCTACTCCCTCCGA 59.825 50.000 0.00 0.00 0.00 4.55
1534 1569 2.294791 CACATCTAAGCTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
1535 1570 3.301274 ACACATCTAAGCTACTCCCTCC 58.699 50.000 0.00 0.00 0.00 4.30
1536 1571 5.134661 ACTACACATCTAAGCTACTCCCTC 58.865 45.833 0.00 0.00 0.00 4.30
1537 1572 5.132043 ACTACACATCTAAGCTACTCCCT 57.868 43.478 0.00 0.00 0.00 4.20
1538 1573 5.855740 AACTACACATCTAAGCTACTCCC 57.144 43.478 0.00 0.00 0.00 4.30
1539 1574 7.147949 TGGTTAACTACACATCTAAGCTACTCC 60.148 40.741 5.42 0.00 0.00 3.85
1540 1575 7.701501 GTGGTTAACTACACATCTAAGCTACTC 59.298 40.741 16.42 0.00 37.54 2.59
1541 1576 7.396623 AGTGGTTAACTACACATCTAAGCTACT 59.603 37.037 22.26 0.00 39.99 2.57
1542 1577 7.545489 AGTGGTTAACTACACATCTAAGCTAC 58.455 38.462 22.26 0.00 39.99 3.58
1565 1600 1.926108 AGCTGTCCCGAAAGTCTAGT 58.074 50.000 0.00 0.00 0.00 2.57
1625 1662 1.149101 ACAACACAGTCCAGGGGAAT 58.851 50.000 0.00 0.00 31.38 3.01
1628 1665 1.455383 GCAACAACACAGTCCAGGGG 61.455 60.000 0.00 0.00 0.00 4.79
1692 1729 7.391148 AAAAATATCACAGGAGCACGTTAAT 57.609 32.000 0.00 0.00 0.00 1.40
1693 1730 6.811253 AAAAATATCACAGGAGCACGTTAA 57.189 33.333 0.00 0.00 0.00 2.01
1730 1768 5.320549 TCCCACGACAGAAGACTATTTAC 57.679 43.478 0.00 0.00 0.00 2.01
1734 1772 4.021894 GCATATCCCACGACAGAAGACTAT 60.022 45.833 0.00 0.00 0.00 2.12
1747 1785 1.473258 TGCAAACAGGCATATCCCAC 58.527 50.000 0.00 0.00 39.25 4.61
1804 1842 0.040336 GAGCGCGAGATACAATCCGA 60.040 55.000 12.10 0.00 0.00 4.55
1835 1873 1.606601 GTCTTTCCCCAACTGGCCC 60.607 63.158 0.00 0.00 0.00 5.80
1836 1874 1.606601 GGTCTTTCCCCAACTGGCC 60.607 63.158 0.00 0.00 0.00 5.36
1837 1875 1.971695 CGGTCTTTCCCCAACTGGC 60.972 63.158 0.00 0.00 0.00 4.85
1843 1881 2.031465 GAACGCGGTCTTTCCCCA 59.969 61.111 18.88 0.00 0.00 4.96
1854 1892 1.324736 GGCTGAGTAATCAAGAACGCG 59.675 52.381 3.53 3.53 0.00 6.01
1865 1903 3.820425 CCCCCACTGGCTGAGTAA 58.180 61.111 0.00 0.00 31.73 2.24
1883 1921 0.674534 ATACGTGGGAGGCGATCTTC 59.325 55.000 0.00 0.00 0.00 2.87
1936 1980 0.996762 AGGGTTTGTGGGGTTCCTCA 60.997 55.000 0.00 0.00 35.02 3.86
1940 1984 0.106419 TGTCAGGGTTTGTGGGGTTC 60.106 55.000 0.00 0.00 0.00 3.62
1949 1994 1.152756 GTGTGGCCTGTCAGGGTTT 60.153 57.895 20.72 0.00 35.37 3.27
1964 2009 4.935495 CGGCTGGCCTGTGTGTGT 62.935 66.667 11.69 0.00 0.00 3.72
1977 2022 0.178068 CCAGTAGTAATGTGGCGGCT 59.822 55.000 11.43 0.00 0.00 5.52
2006 2052 4.262121 GCAAACCATTATATCTGCATGGCA 60.262 41.667 0.09 0.00 41.21 4.92
2007 2053 4.240096 GCAAACCATTATATCTGCATGGC 58.760 43.478 0.09 0.00 41.21 4.40
2022 2068 1.455849 CTCCCTCACTGGCAAACCA 59.544 57.895 0.00 0.00 46.51 3.67
2025 2071 0.555769 AAACCTCCCTCACTGGCAAA 59.444 50.000 0.00 0.00 0.00 3.68
2068 2115 1.069090 GCGCATGATTCCCCGTAGA 59.931 57.895 0.30 0.00 0.00 2.59
2070 2117 1.227527 CAGCGCATGATTCCCCGTA 60.228 57.895 11.47 0.00 0.00 4.02
2101 2148 0.882927 GTGTAACGCTTGTGGCTCCA 60.883 55.000 0.00 0.00 39.13 3.86
2112 2159 2.685850 AAGGGTCCATAGTGTAACGC 57.314 50.000 0.00 0.00 45.86 4.84
2114 2161 2.934553 GCGAAAGGGTCCATAGTGTAAC 59.065 50.000 0.00 0.00 0.00 2.50
2201 2256 6.098679 TGTGTTTTCAACATCCAAGTCAAAG 58.901 36.000 0.00 0.00 44.35 2.77
2208 2265 5.593909 AGACTGATGTGTTTTCAACATCCAA 59.406 36.000 12.60 0.00 44.35 3.53
2216 2273 7.502226 ACAATCCTAAAGACTGATGTGTTTTCA 59.498 33.333 0.00 0.00 39.77 2.69
2222 2279 6.652481 ACTTGACAATCCTAAAGACTGATGTG 59.348 38.462 0.00 0.00 0.00 3.21
2223 2280 6.773638 ACTTGACAATCCTAAAGACTGATGT 58.226 36.000 0.00 0.00 0.00 3.06
2277 2339 0.475906 ATAAGTCCAGATGGCAGCCC 59.524 55.000 9.64 0.00 34.44 5.19
2307 2369 3.411446 ACAGAAACTCAATGAATGCGGA 58.589 40.909 0.00 0.00 0.00 5.54
2342 2414 4.759693 CACATCTTGGTTAGTGCCAACTTA 59.240 41.667 0.00 0.00 42.98 2.24
2389 2461 2.961526 TTAGAATCTCCGCCACAGTC 57.038 50.000 0.00 0.00 0.00 3.51
2392 2464 3.007506 TGTTCTTTAGAATCTCCGCCACA 59.992 43.478 0.00 0.00 36.33 4.17
2407 2479 1.227853 AGCGAGGCCGTTGTTCTTT 60.228 52.632 0.00 0.00 38.24 2.52
2443 2515 7.455008 AGTCTACATTACAGGGAAAGAAGAAGA 59.545 37.037 0.00 0.00 0.00 2.87
2445 2517 7.554959 AGTCTACATTACAGGGAAAGAAGAA 57.445 36.000 0.00 0.00 0.00 2.52
2464 2536 7.423844 ACACCATTTGATCAGACATAGTCTA 57.576 36.000 0.00 0.00 41.37 2.59
2468 2540 6.748333 ACAACACCATTTGATCAGACATAG 57.252 37.500 0.00 0.00 0.00 2.23
2481 2553 5.107143 GCAATTTTCGCATAACAACACCATT 60.107 36.000 0.00 0.00 0.00 3.16
2484 2556 3.987220 AGCAATTTTCGCATAACAACACC 59.013 39.130 0.00 0.00 0.00 4.16
2485 2557 5.219768 CGTAGCAATTTTCGCATAACAACAC 60.220 40.000 0.00 0.00 0.00 3.32
2486 2558 4.848841 CGTAGCAATTTTCGCATAACAACA 59.151 37.500 0.00 0.00 0.00 3.33
2487 2559 4.849383 ACGTAGCAATTTTCGCATAACAAC 59.151 37.500 0.00 0.00 0.00 3.32
2488 2560 4.848841 CACGTAGCAATTTTCGCATAACAA 59.151 37.500 0.00 0.00 0.00 2.83
2489 2561 4.083749 ACACGTAGCAATTTTCGCATAACA 60.084 37.500 0.00 0.00 0.00 2.41
2490 2562 4.259734 CACACGTAGCAATTTTCGCATAAC 59.740 41.667 0.00 0.00 0.00 1.89
2491 2563 4.152580 TCACACGTAGCAATTTTCGCATAA 59.847 37.500 0.00 0.00 0.00 1.90
2492 2564 3.680458 TCACACGTAGCAATTTTCGCATA 59.320 39.130 0.00 0.00 0.00 3.14
2493 2565 2.482336 TCACACGTAGCAATTTTCGCAT 59.518 40.909 0.00 0.00 0.00 4.73
2494 2566 1.867865 TCACACGTAGCAATTTTCGCA 59.132 42.857 0.00 0.00 0.00 5.10
2495 2567 2.587612 TCACACGTAGCAATTTTCGC 57.412 45.000 0.00 0.00 0.00 4.70
2496 2568 4.320667 TGATCACACGTAGCAATTTTCG 57.679 40.909 0.00 0.00 0.00 3.46
2497 2569 5.868257 TCATGATCACACGTAGCAATTTTC 58.132 37.500 0.00 0.00 0.00 2.29
2500 2572 5.118286 TGATCATGATCACACGTAGCAATT 58.882 37.500 30.27 0.00 42.42 2.32
2501 2573 4.696455 TGATCATGATCACACGTAGCAAT 58.304 39.130 30.27 0.00 42.42 3.56
2502 2574 4.122143 TGATCATGATCACACGTAGCAA 57.878 40.909 30.27 7.52 42.42 3.91
2510 2582 2.679336 CAGCCGTTTGATCATGATCACA 59.321 45.455 33.02 25.79 46.49 3.58
2511 2583 2.679837 ACAGCCGTTTGATCATGATCAC 59.320 45.455 33.02 22.71 46.49 3.06
2512 2584 2.679336 CACAGCCGTTTGATCATGATCA 59.321 45.455 30.27 30.27 45.30 2.92
2513 2585 2.540361 GCACAGCCGTTTGATCATGATC 60.540 50.000 25.91 25.91 38.29 2.92
2514 2586 1.402968 GCACAGCCGTTTGATCATGAT 59.597 47.619 8.25 8.25 0.00 2.45
2517 2589 1.647545 CCGCACAGCCGTTTGATCAT 61.648 55.000 0.00 0.00 0.00 2.45
2518 2590 2.324330 CCGCACAGCCGTTTGATCA 61.324 57.895 0.00 0.00 0.00 2.92
2519 2591 2.480555 CCGCACAGCCGTTTGATC 59.519 61.111 0.00 0.00 0.00 2.92
2554 2626 2.982130 CTGACGTTCCCTGGGAGG 59.018 66.667 16.38 14.28 31.21 4.30
2555 2627 2.266055 GCTGACGTTCCCTGGGAG 59.734 66.667 16.38 8.03 31.21 4.30
2556 2628 3.319198 GGCTGACGTTCCCTGGGA 61.319 66.667 12.53 12.53 0.00 4.37
2557 2629 3.612247 CTGGCTGACGTTCCCTGGG 62.612 68.421 6.33 6.33 0.00 4.45
2558 2630 2.046892 CTGGCTGACGTTCCCTGG 60.047 66.667 0.00 0.00 0.00 4.45
2559 2631 0.320374 TAACTGGCTGACGTTCCCTG 59.680 55.000 0.00 0.00 0.00 4.45
2560 2632 1.053424 TTAACTGGCTGACGTTCCCT 58.947 50.000 0.00 0.00 0.00 4.20
2561 2633 1.154197 GTTAACTGGCTGACGTTCCC 58.846 55.000 0.00 0.00 0.00 3.97
2562 2634 1.873698 TGTTAACTGGCTGACGTTCC 58.126 50.000 7.22 0.00 0.00 3.62
2563 2635 4.142966 GGTAATGTTAACTGGCTGACGTTC 60.143 45.833 7.22 0.00 0.00 3.95
2564 2636 3.749609 GGTAATGTTAACTGGCTGACGTT 59.250 43.478 7.22 0.00 0.00 3.99
2565 2637 3.332034 GGTAATGTTAACTGGCTGACGT 58.668 45.455 7.22 0.00 0.00 4.34
2566 2638 2.347452 CGGTAATGTTAACTGGCTGACG 59.653 50.000 7.22 0.00 0.00 4.35
2567 2639 3.332034 ACGGTAATGTTAACTGGCTGAC 58.668 45.455 7.22 0.00 0.00 3.51
2568 2640 3.688694 ACGGTAATGTTAACTGGCTGA 57.311 42.857 7.22 0.00 0.00 4.26
2569 2641 4.759516 AAACGGTAATGTTAACTGGCTG 57.240 40.909 7.22 2.81 0.00 4.85
2570 2642 6.174760 TGATAAACGGTAATGTTAACTGGCT 58.825 36.000 7.22 0.00 0.00 4.75
2571 2643 6.425577 TGATAAACGGTAATGTTAACTGGC 57.574 37.500 7.22 0.00 0.00 4.85
2576 2648 9.938670 GCACATAATGATAAACGGTAATGTTAA 57.061 29.630 0.00 0.00 0.00 2.01
2577 2649 9.332502 AGCACATAATGATAAACGGTAATGTTA 57.667 29.630 0.00 0.00 0.00 2.41
2578 2650 8.220755 AGCACATAATGATAAACGGTAATGTT 57.779 30.769 0.00 0.00 0.00 2.71
2579 2651 7.715249 AGAGCACATAATGATAAACGGTAATGT 59.285 33.333 0.00 0.00 0.00 2.71
2580 2652 8.011673 CAGAGCACATAATGATAAACGGTAATG 58.988 37.037 0.00 0.00 0.00 1.90
2581 2653 7.931407 TCAGAGCACATAATGATAAACGGTAAT 59.069 33.333 0.00 0.00 0.00 1.89
2582 2654 7.269316 TCAGAGCACATAATGATAAACGGTAA 58.731 34.615 0.00 0.00 0.00 2.85
2583 2655 6.811954 TCAGAGCACATAATGATAAACGGTA 58.188 36.000 0.00 0.00 0.00 4.02
2584 2656 5.670485 TCAGAGCACATAATGATAAACGGT 58.330 37.500 0.00 0.00 0.00 4.83
2585 2657 6.258727 AGTTCAGAGCACATAATGATAAACGG 59.741 38.462 0.00 0.00 0.00 4.44
2586 2658 7.239166 AGTTCAGAGCACATAATGATAAACG 57.761 36.000 0.00 0.00 0.00 3.60
2587 2659 9.495754 GAAAGTTCAGAGCACATAATGATAAAC 57.504 33.333 0.00 0.00 0.00 2.01
2601 2673 5.765677 AGGTTAAAAGAGGAAAGTTCAGAGC 59.234 40.000 0.00 0.00 0.00 4.09
2628 2700 5.899547 TGGATGTCCTAATCTCTACACACAT 59.100 40.000 0.09 0.00 36.82 3.21
2654 2726 7.928706 CCTCTAGATTCGTCATTTATTTCCACT 59.071 37.037 0.00 0.00 0.00 4.00
2666 2738 1.734137 GCGGCCTCTAGATTCGTCA 59.266 57.895 0.00 0.00 0.00 4.35
2675 2747 1.567208 TTTGGAATGGGCGGCCTCTA 61.567 55.000 29.87 14.48 0.00 2.43
2705 2777 3.629398 AGCCAAACTGTTGTTCTTCTCTG 59.371 43.478 0.00 0.00 34.96 3.35
2711 2783 3.356290 AGACAAGCCAAACTGTTGTTCT 58.644 40.909 0.00 0.00 34.55 3.01
2712 2784 3.378427 AGAGACAAGCCAAACTGTTGTTC 59.622 43.478 0.00 0.00 34.55 3.18
2729 2818 1.334869 CACACTGGCAACCAAAGAGAC 59.665 52.381 0.00 0.00 30.80 3.36
2738 2827 2.880890 AGAGAAATGACACACTGGCAAC 59.119 45.455 0.00 0.00 39.86 4.17
2742 2831 4.321718 ACATCAGAGAAATGACACACTGG 58.678 43.478 0.00 0.00 30.46 4.00
2745 2834 7.601073 TTCATACATCAGAGAAATGACACAC 57.399 36.000 0.00 0.00 30.46 3.82
2750 2841 8.820933 GTCGAATTTCATACATCAGAGAAATGA 58.179 33.333 0.00 0.00 39.75 2.57
2753 2844 8.777865 AAGTCGAATTTCATACATCAGAGAAA 57.222 30.769 0.00 0.00 34.83 2.52
2770 2861 8.428186 TGTCAGTTTTAGTTGTTAAGTCGAAT 57.572 30.769 0.00 0.00 0.00 3.34
2774 2865 8.149973 TCCATGTCAGTTTTAGTTGTTAAGTC 57.850 34.615 0.00 0.00 0.00 3.01
2795 2889 6.466812 TCAATCTGCGTGAACATATATCCAT 58.533 36.000 0.00 0.00 0.00 3.41
2796 2890 5.852827 TCAATCTGCGTGAACATATATCCA 58.147 37.500 0.00 0.00 0.00 3.41
2799 2893 8.743714 TCTATCTCAATCTGCGTGAACATATAT 58.256 33.333 0.00 0.00 0.00 0.86
2800 2894 8.110860 TCTATCTCAATCTGCGTGAACATATA 57.889 34.615 0.00 0.00 0.00 0.86
2802 2896 6.039829 ACTCTATCTCAATCTGCGTGAACATA 59.960 38.462 0.00 0.00 0.00 2.29
2803 2897 5.163468 ACTCTATCTCAATCTGCGTGAACAT 60.163 40.000 0.00 0.00 0.00 2.71
2804 2898 4.158579 ACTCTATCTCAATCTGCGTGAACA 59.841 41.667 0.00 0.00 0.00 3.18
2805 2899 4.677584 ACTCTATCTCAATCTGCGTGAAC 58.322 43.478 0.00 0.00 0.00 3.18
2936 3030 2.661979 GCGGAAACAAAGTAGAGCAACG 60.662 50.000 0.00 0.00 0.00 4.10
2953 3047 4.636648 TCTGAAGTTTTAAACAACAGCGGA 59.363 37.500 20.37 9.54 37.03 5.54
2954 3048 4.915704 TCTGAAGTTTTAAACAACAGCGG 58.084 39.130 20.37 7.96 37.03 5.52
2975 3070 2.480759 GCCATGTCTCATGCATTGGTTC 60.481 50.000 13.10 0.00 0.00 3.62
2986 3081 1.005037 GGACACACGCCATGTCTCA 60.005 57.895 12.41 0.00 44.88 3.27
3024 3119 5.730550 AGAGTTCACAAACACTGACACTAA 58.269 37.500 0.00 0.00 35.36 2.24
3060 3155 0.447801 AATGCACGCGGAACAGATTC 59.552 50.000 12.47 0.00 0.00 2.52
3082 3177 0.467290 AGCCAGCGGTTTGGAGAAAA 60.467 50.000 5.08 0.00 40.87 2.29
3128 3236 0.251297 CACCAGATTGGGACCAAGCA 60.251 55.000 20.09 0.00 43.87 3.91
3130 3238 0.967380 GCCACCAGATTGGGACCAAG 60.967 60.000 9.90 0.00 43.37 3.61
3138 3246 2.386661 AACGTAGAGCCACCAGATTG 57.613 50.000 0.00 0.00 0.00 2.67
3190 3302 0.242017 GAAGGACAGCGCTTGCATTT 59.758 50.000 7.50 0.00 42.66 2.32
3197 3309 1.186200 TACATGAGAAGGACAGCGCT 58.814 50.000 2.64 2.64 0.00 5.92
3238 3486 1.078143 AGCGGATTTGCTCCCAGAC 60.078 57.895 0.00 0.00 42.95 3.51
3385 3635 0.175989 ATCGCCTCCTTCGTTTCTCC 59.824 55.000 0.00 0.00 0.00 3.71
3392 3642 4.207281 TCGCCATCGCCTCCTTCG 62.207 66.667 0.00 0.00 35.26 3.79
3497 3756 4.626402 TTCCCCGTCCTCCCGTGT 62.626 66.667 0.00 0.00 0.00 4.49
3687 3946 2.364973 TACCTGATGCTCCGGCCA 60.365 61.111 2.24 0.00 37.74 5.36
3833 4099 2.158623 GGTCCATGGCTGATGTCCATTA 60.159 50.000 6.96 0.00 42.11 1.90
3859 4127 3.068448 TGCACAGCAACAACATTTCTGAT 59.932 39.130 0.00 0.00 34.76 2.90
3861 4129 2.792674 CTGCACAGCAACAACATTTCTG 59.207 45.455 0.00 0.00 38.41 3.02
3871 4139 0.250295 TGTAGGACCTGCACAGCAAC 60.250 55.000 8.39 0.00 38.41 4.17
3874 4142 0.250234 TGATGTAGGACCTGCACAGC 59.750 55.000 15.13 9.98 0.00 4.40
3875 4143 2.027745 ACTTGATGTAGGACCTGCACAG 60.028 50.000 15.13 12.96 0.00 3.66
3876 4144 1.977854 ACTTGATGTAGGACCTGCACA 59.022 47.619 15.13 11.80 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.