Multiple sequence alignment - TraesCS3A01G128600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G128600 chr3A 100.000 6364 0 0 1 6364 106302547 106308910 0.000000e+00 11753.0
1 TraesCS3A01G128600 chr3A 98.305 59 0 1 6158 6215 106308651 106308709 1.130000e-17 102.0
2 TraesCS3A01G128600 chr3A 98.305 59 0 1 6105 6163 106308704 106308761 1.130000e-17 102.0
3 TraesCS3A01G128600 chr3D 95.355 5275 197 25 120 5378 89540550 89545792 0.000000e+00 8340.0
4 TraesCS3A01G128600 chr3D 90.050 201 13 5 5932 6128 89545875 89546072 2.940000e-63 254.0
5 TraesCS3A01G128600 chr3D 97.872 141 3 0 6224 6364 89546081 89546221 1.770000e-60 244.0
6 TraesCS3A01G128600 chr3B 94.131 4447 199 30 120 4523 139031464 139035891 0.000000e+00 6709.0
7 TraesCS3A01G128600 chr3B 94.714 454 10 7 4916 5369 139036490 139036929 0.000000e+00 693.0
8 TraesCS3A01G128600 chr3B 96.296 270 10 0 4562 4831 139035888 139036157 1.630000e-120 444.0
9 TraesCS3A01G128600 chr3B 88.644 317 19 8 5368 5682 139037158 139037459 2.800000e-98 370.0
10 TraesCS3A01G128600 chr3B 94.545 165 9 0 5969 6133 139037459 139037623 8.190000e-64 255.0
11 TraesCS3A01G128600 chr3B 94.845 97 5 0 4822 4918 139036271 139036367 1.110000e-32 152.0
12 TraesCS3A01G128600 chr3B 93.182 44 2 1 6126 6168 85038573 85038616 5.330000e-06 63.9
13 TraesCS3A01G128600 chr3B 95.000 40 2 0 5784 5823 651738991 651739030 5.330000e-06 63.9
14 TraesCS3A01G128600 chr4A 98.182 55 1 0 64 118 35201594 35201648 5.250000e-16 97.1
15 TraesCS3A01G128600 chr4A 90.909 44 3 1 6126 6168 35009096 35009139 2.480000e-04 58.4
16 TraesCS3A01G128600 chr6D 89.855 69 7 0 64 132 81043116 81043184 8.790000e-14 89.8
17 TraesCS3A01G128600 chr6D 91.837 49 4 0 6173 6221 24825475 24825523 1.140000e-07 69.4
18 TraesCS3A01G128600 chr6D 93.023 43 3 0 6121 6163 24825475 24825517 5.330000e-06 63.9
19 TraesCS3A01G128600 chr6D 89.796 49 3 2 6126 6173 240906907 240906954 1.920000e-05 62.1
20 TraesCS3A01G128600 chr2A 96.296 54 2 0 65 118 613183248 613183195 8.790000e-14 89.8
21 TraesCS3A01G128600 chr2A 94.444 54 3 0 66 119 136976520 136976573 4.090000e-12 84.2
22 TraesCS3A01G128600 chr2A 100.000 35 0 0 28 62 613183331 613183297 1.480000e-06 65.8
23 TraesCS3A01G128600 chr5D 93.878 49 3 0 6174 6222 480491827 480491875 2.460000e-09 75.0
24 TraesCS3A01G128600 chr2B 97.619 42 1 0 6181 6222 457697553 457697594 8.850000e-09 73.1
25 TraesCS3A01G128600 chr2B 90.909 44 3 1 6126 6168 318232083 318232040 2.480000e-04 58.4
26 TraesCS3A01G128600 chr2B 96.875 32 0 1 209 240 765068379 765068409 1.200000e-02 52.8
27 TraesCS3A01G128600 chr2D 95.455 44 2 0 6178 6221 70157401 70157358 3.180000e-08 71.3
28 TraesCS3A01G128600 chr2D 95.455 44 2 0 6179 6222 548713116 548713073 3.180000e-08 71.3
29 TraesCS3A01G128600 chr2D 95.455 44 2 0 6179 6222 548715537 548715494 3.180000e-08 71.3
30 TraesCS3A01G128600 chr7D 90.385 52 5 0 6171 6222 561960129 561960180 1.140000e-07 69.4
31 TraesCS3A01G128600 chr7D 91.111 45 4 0 6119 6163 561960129 561960173 1.920000e-05 62.1
32 TraesCS3A01G128600 chr4B 97.500 40 1 0 5778 5817 666568915 666568876 1.140000e-07 69.4
33 TraesCS3A01G128600 chr4B 88.889 54 5 1 6168 6221 619190977 619190925 1.480000e-06 65.8
34 TraesCS3A01G128600 chr4B 89.583 48 4 1 6116 6163 619190977 619190931 6.890000e-05 60.2
35 TraesCS3A01G128600 chr1B 93.478 46 3 0 5778 5823 22328180 22328135 1.140000e-07 69.4
36 TraesCS3A01G128600 chr6B 97.436 39 1 0 5778 5816 641887943 641887981 4.120000e-07 67.6
37 TraesCS3A01G128600 chr5A 93.182 44 2 1 6126 6168 449416848 449416891 5.330000e-06 63.9
38 TraesCS3A01G128600 chr1A 93.182 44 2 1 6126 6168 358652032 358652075 5.330000e-06 63.9
39 TraesCS3A01G128600 chr1A 93.023 43 3 0 6121 6163 522969990 522970032 5.330000e-06 63.9
40 TraesCS3A01G128600 chr7B 89.796 49 4 1 5776 5823 391724087 391724039 1.920000e-05 62.1
41 TraesCS3A01G128600 chr7B 89.796 49 4 1 5776 5823 391748347 391748299 1.920000e-05 62.1
42 TraesCS3A01G128600 chr6A 89.796 49 4 1 5776 5823 23497301 23497253 1.920000e-05 62.1
43 TraesCS3A01G128600 chr6A 97.297 37 0 1 5776 5811 112004303 112004339 1.920000e-05 62.1
44 TraesCS3A01G128600 chr1D 92.683 41 2 1 6182 6222 484022585 484022546 2.480000e-04 58.4
45 TraesCS3A01G128600 chr1D 86.275 51 7 0 5778 5828 22943531 22943481 8.910000e-04 56.5
46 TraesCS3A01G128600 chr1D 92.500 40 2 1 6125 6163 331283827 331283866 8.910000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G128600 chr3A 106302547 106308910 6363 False 3985.666667 11753 98.870000 1 6364 3 chr3A.!!$F1 6363
1 TraesCS3A01G128600 chr3D 89540550 89546221 5671 False 2946.000000 8340 94.425667 120 6364 3 chr3D.!!$F1 6244
2 TraesCS3A01G128600 chr3B 139031464 139037623 6159 False 1437.166667 6709 93.862500 120 6133 6 chr3B.!!$F3 6013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 536 0.038892 GACAACGAGTAGGCCGTCAA 60.039 55.0 0.00 0.0 39.57 3.18 F
619 622 0.918983 AACATCCACATCCGGACCAT 59.081 50.0 6.12 0.0 38.07 3.55 F
1573 1612 0.690762 ACCCGCAAAGGATGTGTACT 59.309 50.0 0.00 0.0 45.00 2.73 F
1837 1876 0.186630 ATAGCATTGCCAGGCATCCA 59.813 50.0 17.09 0.0 38.76 3.41 F
2322 2363 0.328258 TTCAGCCCTTAACCCTGAGC 59.672 55.0 0.00 0.0 36.99 4.26 F
2823 2865 2.619849 CCTGGATGTTGCCTCATGTCTT 60.620 50.0 0.00 0.0 0.00 3.01 F
4327 4380 0.968405 GAATTGCTGGGGTTGCTCAA 59.032 50.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1460 0.109723 GACAAACCCCTACAGCCACA 59.890 55.000 0.00 0.00 0.00 4.17 R
1803 1842 1.742831 TGCTATGCGCTTAGGGTTTTG 59.257 47.619 26.16 5.92 40.11 2.44 R
3153 3203 0.519519 TGTTTGCTTACGGGCGAATG 59.480 50.000 0.00 0.00 37.82 2.67 R
4302 4355 1.415659 CAACCCCAGCAATTCACCAAA 59.584 47.619 0.00 0.00 0.00 3.28 R
4327 4380 1.619827 CAACTTCACCCATGTGGCAAT 59.380 47.619 0.00 0.00 42.98 3.56 R
4987 5289 1.349688 TGAAGAAGCGGCTAAAAGGGA 59.650 47.619 1.35 0.00 0.00 4.20 R
6216 6756 0.251922 AGGGTACTCTGGCGGTGTTA 60.252 55.000 6.32 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.906199 AGTGTAGATAAGATACTGCCTTTCT 57.094 36.000 0.00 0.00 0.00 2.52
25 26 8.312669 AGTGTAGATAAGATACTGCCTTTCTT 57.687 34.615 0.00 0.00 34.29 2.52
26 27 9.422681 AGTGTAGATAAGATACTGCCTTTCTTA 57.577 33.333 0.00 0.00 36.64 2.10
35 36 9.819267 AAGATACTGCCTTTCTTATAACACTAC 57.181 33.333 0.00 0.00 0.00 2.73
36 37 8.422566 AGATACTGCCTTTCTTATAACACTACC 58.577 37.037 0.00 0.00 0.00 3.18
37 38 6.622427 ACTGCCTTTCTTATAACACTACCT 57.378 37.500 0.00 0.00 0.00 3.08
38 39 7.729124 ACTGCCTTTCTTATAACACTACCTA 57.271 36.000 0.00 0.00 0.00 3.08
39 40 8.320338 ACTGCCTTTCTTATAACACTACCTAT 57.680 34.615 0.00 0.00 0.00 2.57
40 41 8.422566 ACTGCCTTTCTTATAACACTACCTATC 58.577 37.037 0.00 0.00 0.00 2.08
41 42 8.313944 TGCCTTTCTTATAACACTACCTATCA 57.686 34.615 0.00 0.00 0.00 2.15
42 43 8.764558 TGCCTTTCTTATAACACTACCTATCAA 58.235 33.333 0.00 0.00 0.00 2.57
43 44 9.043079 GCCTTTCTTATAACACTACCTATCAAC 57.957 37.037 0.00 0.00 0.00 3.18
52 53 7.735326 AACACTACCTATCAACTTCATACCT 57.265 36.000 0.00 0.00 0.00 3.08
53 54 8.834004 AACACTACCTATCAACTTCATACCTA 57.166 34.615 0.00 0.00 0.00 3.08
54 55 8.834004 ACACTACCTATCAACTTCATACCTAA 57.166 34.615 0.00 0.00 0.00 2.69
55 56 9.263446 ACACTACCTATCAACTTCATACCTAAA 57.737 33.333 0.00 0.00 0.00 1.85
75 76 8.927411 ACCTAAATATTTATTGAATGCTTGGCT 58.073 29.630 8.34 0.00 0.00 4.75
76 77 9.768662 CCTAAATATTTATTGAATGCTTGGCTT 57.231 29.630 8.34 0.00 0.00 4.35
78 79 7.486802 AATATTTATTGAATGCTTGGCTTGC 57.513 32.000 0.00 0.00 0.00 4.01
79 80 2.965572 TATTGAATGCTTGGCTTGCC 57.034 45.000 4.43 4.43 0.00 4.52
80 81 0.251073 ATTGAATGCTTGGCTTGCCC 59.749 50.000 9.35 0.00 0.00 5.36
81 82 0.832983 TTGAATGCTTGGCTTGCCCT 60.833 50.000 9.35 0.00 0.00 5.19
82 83 1.252904 TGAATGCTTGGCTTGCCCTC 61.253 55.000 9.35 0.00 0.00 4.30
83 84 2.275547 GAATGCTTGGCTTGCCCTCG 62.276 60.000 9.35 0.00 0.00 4.63
90 91 3.752339 GCTTGCCCTCGCCCTTTG 61.752 66.667 0.00 0.00 0.00 2.77
91 92 3.752339 CTTGCCCTCGCCCTTTGC 61.752 66.667 0.00 0.00 0.00 3.68
100 101 2.125952 GCCCTTTGCGCCATTGAC 60.126 61.111 4.18 0.00 0.00 3.18
101 102 2.179018 CCCTTTGCGCCATTGACG 59.821 61.111 4.18 0.00 0.00 4.35
108 109 2.176546 CGCCATTGACGCAACAGG 59.823 61.111 7.87 7.87 0.00 4.00
109 110 2.616330 CGCCATTGACGCAACAGGT 61.616 57.895 11.59 0.00 0.00 4.00
110 111 1.210155 GCCATTGACGCAACAGGTC 59.790 57.895 11.59 0.00 34.99 3.85
111 112 1.514678 GCCATTGACGCAACAGGTCA 61.515 55.000 11.59 0.00 42.31 4.02
112 113 1.167851 CCATTGACGCAACAGGTCAT 58.832 50.000 0.00 0.00 43.37 3.06
113 114 1.131126 CCATTGACGCAACAGGTCATC 59.869 52.381 0.00 0.00 43.37 2.92
114 115 2.079158 CATTGACGCAACAGGTCATCT 58.921 47.619 0.00 0.00 43.37 2.90
115 116 3.261580 CATTGACGCAACAGGTCATCTA 58.738 45.455 0.00 0.00 43.37 1.98
116 117 2.654749 TGACGCAACAGGTCATCTAG 57.345 50.000 0.00 0.00 39.36 2.43
117 118 1.893137 TGACGCAACAGGTCATCTAGT 59.107 47.619 0.00 0.00 39.36 2.57
118 119 3.086282 TGACGCAACAGGTCATCTAGTA 58.914 45.455 0.00 0.00 39.36 1.82
185 186 5.185454 CACCTGCATGGACAGTAAATTCTA 58.815 41.667 8.91 0.00 39.71 2.10
190 191 8.253113 CCTGCATGGACAGTAAATTCTAAAAAT 58.747 33.333 0.00 0.00 38.35 1.82
284 285 6.198966 CGCCATGAAAATACATCTTTAAAGGC 59.801 38.462 15.13 5.46 0.00 4.35
391 392 6.654161 TCATTTCAATGTAAAAATTGGCAGGG 59.346 34.615 0.00 0.00 37.98 4.45
467 470 2.747446 GTTCATGCGGGTGTATTTGAGT 59.253 45.455 0.00 0.00 0.00 3.41
506 509 1.837439 TGTCCCTCAAAGACGCCATAT 59.163 47.619 0.00 0.00 37.04 1.78
533 536 0.038892 GACAACGAGTAGGCCGTCAA 60.039 55.000 0.00 0.00 39.57 3.18
563 566 5.475719 TGAACTACGGTTAGGAATGAACAG 58.524 41.667 0.00 0.00 35.58 3.16
565 568 5.326200 ACTACGGTTAGGAATGAACAGAG 57.674 43.478 0.00 0.00 0.00 3.35
575 578 6.581171 AGGAATGAACAGAGGAAATTTCAC 57.419 37.500 19.49 12.40 30.99 3.18
619 622 0.918983 AACATCCACATCCGGACCAT 59.081 50.000 6.12 0.00 38.07 3.55
687 691 9.825972 CAGTGATATTTACAAAGAAACAACGAT 57.174 29.630 0.00 0.00 0.00 3.73
743 748 2.884639 ACAATACTCCACAACCAGTTGC 59.115 45.455 10.39 0.00 44.03 4.17
765 770 1.107538 ATCTGGTGCATCATGCTGGC 61.108 55.000 11.84 1.02 45.31 4.85
788 793 8.428063 TGGCTGAAAATCCTCAAGAAAATTTTA 58.572 29.630 2.75 0.00 32.90 1.52
789 794 8.929746 GGCTGAAAATCCTCAAGAAAATTTTAG 58.070 33.333 2.75 0.00 32.90 1.85
790 795 9.696917 GCTGAAAATCCTCAAGAAAATTTTAGA 57.303 29.630 2.75 2.11 32.90 2.10
836 842 9.297037 GGCCAACCTGTCTACAATAATTATTAT 57.703 33.333 10.34 2.20 0.00 1.28
896 902 2.093783 CGAAGGGATCGTTAAACACTGC 59.906 50.000 0.00 0.00 46.52 4.40
930 936 5.118664 CACAAAATCTCTACGTACACACAGG 59.881 44.000 0.00 0.00 0.00 4.00
956 962 1.893808 CCAGTCACCACACCACAGC 60.894 63.158 0.00 0.00 0.00 4.40
959 965 1.451207 GTCACCACACCACAGCACA 60.451 57.895 0.00 0.00 0.00 4.57
1199 1234 2.126346 CGAACCCCACCGTCGTAC 60.126 66.667 0.00 0.00 0.00 3.67
1294 1333 2.599677 CTAGTAGGGGGAAGAAGCGAT 58.400 52.381 0.00 0.00 0.00 4.58
1395 1434 2.157421 GCTCCAGCTCTGTTCGTTG 58.843 57.895 0.00 0.00 38.21 4.10
1426 1465 2.611225 ATTCCTCTCGATCTTGTGGC 57.389 50.000 0.00 0.00 0.00 5.01
1448 1487 4.710324 CTGTAGGGGTTTGTCAGTTTACA 58.290 43.478 0.00 0.00 0.00 2.41
1455 1494 5.163499 GGGGTTTGTCAGTTTACACAATTCA 60.163 40.000 0.00 0.00 32.60 2.57
1480 1519 8.671921 CAGCTTGTAAATCTGTATCTCATTTGT 58.328 33.333 0.00 0.00 35.45 2.83
1497 1536 3.872511 TTGTCATGTCATGCCATTTCC 57.127 42.857 8.03 0.00 0.00 3.13
1499 1538 3.018856 TGTCATGTCATGCCATTTCCTC 58.981 45.455 8.03 0.00 0.00 3.71
1500 1539 3.018856 GTCATGTCATGCCATTTCCTCA 58.981 45.455 8.03 0.00 0.00 3.86
1508 1547 2.715046 TGCCATTTCCTCAGTAGCAAG 58.285 47.619 0.00 0.00 0.00 4.01
1522 1561 7.171167 CCTCAGTAGCAAGATGAATGAACATAG 59.829 40.741 0.00 0.00 0.00 2.23
1536 1575 8.210265 TGAATGAACATAGTGTTATGCCTGATA 58.790 33.333 0.00 0.00 41.28 2.15
1573 1612 0.690762 ACCCGCAAAGGATGTGTACT 59.309 50.000 0.00 0.00 45.00 2.73
1606 1645 3.138304 TCGATCTCCACACTTTGGTTTG 58.862 45.455 0.00 0.00 46.97 2.93
1613 1652 1.106944 ACACTTTGGTTTGGCGGAGG 61.107 55.000 0.00 0.00 0.00 4.30
1653 1692 2.519013 AGTTTTTGGGTCAGGAGCATC 58.481 47.619 0.56 0.00 0.00 3.91
1671 1710 3.871594 GCATCGGTAGAGTGCAGTAAAAT 59.128 43.478 0.00 0.00 38.68 1.82
1672 1711 4.260375 GCATCGGTAGAGTGCAGTAAAATG 60.260 45.833 0.00 0.00 38.68 2.32
1678 1717 4.085357 AGAGTGCAGTAAAATGTGTCCA 57.915 40.909 0.00 0.00 0.00 4.02
1693 1732 8.816640 AAATGTGTCCAATTATCTGTTTGTTC 57.183 30.769 0.00 0.00 0.00 3.18
1713 1752 5.050634 TGTTCTCCTATTTCGACAAAACACG 60.051 40.000 0.00 0.00 0.00 4.49
1732 1771 4.495422 CACGAGAGCTTTGTGTATAGGTT 58.505 43.478 0.00 0.00 36.58 3.50
1800 1839 2.511218 AGGCTGATCCCACAATACACAT 59.489 45.455 0.00 0.00 34.51 3.21
1803 1842 3.313526 GCTGATCCCACAATACACATGAC 59.686 47.826 0.00 0.00 0.00 3.06
1804 1843 4.516323 CTGATCCCACAATACACATGACA 58.484 43.478 0.00 0.00 0.00 3.58
1814 1853 7.083858 CACAATACACATGACAAAACCCTAAG 58.916 38.462 0.00 0.00 0.00 2.18
1834 1873 1.802337 CGCATAGCATTGCCAGGCAT 61.802 55.000 17.09 2.00 38.76 4.40
1837 1876 0.186630 ATAGCATTGCCAGGCATCCA 59.813 50.000 17.09 0.00 38.76 3.41
1863 1902 6.942532 TGTTATGAACAATAGATCAAGGCC 57.057 37.500 0.00 0.00 38.72 5.19
2067 2106 4.569943 TGTTCCAAAGTGAGATACTGCTC 58.430 43.478 0.00 0.00 40.26 4.26
2133 2172 5.111989 ACATCCAGTGTGATGATCTTAACG 58.888 41.667 21.37 0.00 43.94 3.18
2252 2293 6.593770 TCAGTTATTTCAGTGTGCGACAATAT 59.406 34.615 0.00 0.00 0.00 1.28
2297 2338 9.556030 GTTGTAAACTAATGCTTTATGTCCTTC 57.444 33.333 0.00 0.00 45.32 3.46
2299 2340 9.162764 TGTAAACTAATGCTTTATGTCCTTCTC 57.837 33.333 0.00 0.00 0.00 2.87
2309 2350 6.575162 TTTATGTCCTTCTCTTTTTCAGCC 57.425 37.500 0.00 0.00 0.00 4.85
2322 2363 0.328258 TTCAGCCCTTAACCCTGAGC 59.672 55.000 0.00 0.00 36.99 4.26
2524 2565 9.708222 GTCTGTATGTTTCAATACAATGCTTAG 57.292 33.333 0.00 0.00 41.33 2.18
2549 2590 5.642063 ACGTATTGGTTACTGAATTCACCTG 59.358 40.000 3.38 0.00 0.00 4.00
2550 2591 5.642063 CGTATTGGTTACTGAATTCACCTGT 59.358 40.000 3.38 4.03 0.00 4.00
2712 2754 9.933723 AGCTCTTTATCATGCTGTTTTATTTTT 57.066 25.926 0.00 0.00 34.19 1.94
2823 2865 2.619849 CCTGGATGTTGCCTCATGTCTT 60.620 50.000 0.00 0.00 0.00 3.01
2876 2918 4.020662 CCCAAGTCCTAAGATATCTCTGCC 60.021 50.000 5.51 0.00 0.00 4.85
2913 2955 4.814234 TCTGAACTTTAAACGCAGTCATGT 59.186 37.500 0.00 0.00 45.00 3.21
2925 2967 5.631026 ACGCAGTCATGTCAAATGAATAAC 58.369 37.500 0.00 0.00 29.74 1.89
2997 3043 8.863872 AAACAGCTGTTCTATTAACCATAACT 57.136 30.769 31.20 7.96 37.25 2.24
3153 3203 5.472478 AGTGGAGGGAAAAAGAAAATACGTC 59.528 40.000 0.00 0.00 0.00 4.34
3193 3243 6.225981 ACACAGAAGCTTTTCTCCATTTTT 57.774 33.333 0.00 0.00 0.00 1.94
3742 3792 2.996631 AGGCCAATGCTGAGAAACTAG 58.003 47.619 5.01 0.00 37.74 2.57
4309 4362 6.208599 CCTAATTTCAAGGTTAGCTTTGGTGA 59.791 38.462 0.00 0.00 33.19 4.02
4327 4380 0.968405 GAATTGCTGGGGTTGCTCAA 59.032 50.000 0.00 0.00 0.00 3.02
4382 4435 6.623486 TGATATCTTTGCAACATTTCAGGTG 58.377 36.000 0.00 0.00 0.00 4.00
4500 4553 6.760770 GGAGGATTCTCTTATTCTTGTGAGTG 59.239 42.308 0.00 0.00 39.86 3.51
4625 4678 8.786826 TCATTGTTTATGGATATCGATAACCC 57.213 34.615 24.29 20.01 34.85 4.11
4630 4683 7.827236 TGTTTATGGATATCGATAACCCCATTC 59.173 37.037 27.45 21.08 36.06 2.67
4636 4689 8.701895 TGGATATCGATAACCCCATTCTTATAC 58.298 37.037 24.29 0.91 0.00 1.47
4727 4780 7.519927 TGGAATGATGAATCACATATCTGGAA 58.480 34.615 0.00 0.00 40.03 3.53
4802 4855 9.357652 GTCATTAACAGTACATTTGATTGCAAT 57.642 29.630 12.83 12.83 33.25 3.56
4953 5254 2.717639 AGGGAGCACACCATTGATAC 57.282 50.000 0.00 0.00 0.00 2.24
4957 5258 1.933853 GAGCACACCATTGATACGGAC 59.066 52.381 0.00 0.00 0.00 4.79
5048 5350 0.689623 AGGTCACTGGCCTTCTCAAG 59.310 55.000 3.32 0.00 31.04 3.02
5394 5927 0.251354 AGCGTGCCATGATCTCAACT 59.749 50.000 0.00 0.00 0.00 3.16
5413 5946 5.180492 TCAACTAGTGGGTTTCTTTTATGCG 59.820 40.000 0.00 0.00 0.00 4.73
5415 5948 4.694037 ACTAGTGGGTTTCTTTTATGCGTC 59.306 41.667 0.00 0.00 0.00 5.19
5416 5949 2.482721 AGTGGGTTTCTTTTATGCGTCG 59.517 45.455 0.00 0.00 0.00 5.12
5417 5950 1.807742 TGGGTTTCTTTTATGCGTCGG 59.192 47.619 0.00 0.00 0.00 4.79
5418 5951 2.078392 GGGTTTCTTTTATGCGTCGGA 58.922 47.619 0.00 0.00 0.00 4.55
5419 5952 2.485038 GGGTTTCTTTTATGCGTCGGAA 59.515 45.455 0.00 0.00 0.00 4.30
5420 5953 3.485633 GGTTTCTTTTATGCGTCGGAAC 58.514 45.455 0.00 0.00 0.00 3.62
5421 5954 3.187842 GGTTTCTTTTATGCGTCGGAACT 59.812 43.478 0.00 0.00 0.00 3.01
5422 5955 4.148891 GTTTCTTTTATGCGTCGGAACTG 58.851 43.478 0.00 0.00 0.00 3.16
5423 5956 1.730064 TCTTTTATGCGTCGGAACTGC 59.270 47.619 0.00 0.00 0.00 4.40
5424 5957 1.732259 CTTTTATGCGTCGGAACTGCT 59.268 47.619 0.00 0.00 0.00 4.24
5425 5958 1.075542 TTTATGCGTCGGAACTGCTG 58.924 50.000 0.00 0.00 0.00 4.41
5426 5959 0.037697 TTATGCGTCGGAACTGCTGT 60.038 50.000 0.00 0.00 0.00 4.40
5427 5960 0.735978 TATGCGTCGGAACTGCTGTG 60.736 55.000 0.00 0.00 0.00 3.66
5428 5961 4.077188 GCGTCGGAACTGCTGTGC 62.077 66.667 0.00 0.00 0.00 4.57
5429 5962 3.767230 CGTCGGAACTGCTGTGCG 61.767 66.667 0.00 0.00 0.00 5.34
5430 5963 3.414700 GTCGGAACTGCTGTGCGG 61.415 66.667 0.00 0.00 41.29 5.69
5431 5964 3.611674 TCGGAACTGCTGTGCGGA 61.612 61.111 7.76 7.76 38.46 5.54
5432 5965 3.414700 CGGAACTGCTGTGCGGAC 61.415 66.667 0.00 0.00 38.46 4.79
5433 5966 3.414700 GGAACTGCTGTGCGGACG 61.415 66.667 1.60 0.00 38.46 4.79
5434 5967 2.355837 GAACTGCTGTGCGGACGA 60.356 61.111 1.60 0.00 38.46 4.20
5448 5981 1.137086 CGGACGATTCCTTCAGGTCAT 59.863 52.381 0.00 0.00 40.23 3.06
5467 6000 0.817634 TATTCAAATCCTGCCGGCCG 60.818 55.000 26.77 21.04 0.00 6.13
5484 6017 3.071479 GGCCGGCGATTATTTTATCAGA 58.929 45.455 22.54 0.00 0.00 3.27
5505 6038 4.047142 GAGGCTAACGTTTACTATTCCCG 58.953 47.826 5.91 0.00 0.00 5.14
5512 6045 2.280708 CGTTTACTATTCCCGTTCAGCG 59.719 50.000 0.00 0.00 40.95 5.18
5543 6078 5.143376 AGGTCTTTTAAGGACGAATTCGA 57.857 39.130 33.05 8.53 43.02 3.71
5548 6083 7.116805 GGTCTTTTAAGGACGAATTCGAAAGTA 59.883 37.037 33.05 16.25 43.02 2.24
5551 6086 9.821662 CTTTTAAGGACGAATTCGAAAGTATTT 57.178 29.630 33.05 17.49 43.98 1.40
5553 6088 6.796705 AAGGACGAATTCGAAAGTATTTGT 57.203 33.333 33.05 7.43 44.84 2.83
5604 6139 2.034066 CTCCCGGCCTTTGCAGAA 59.966 61.111 0.00 0.00 40.13 3.02
5605 6140 1.603455 CTCCCGGCCTTTGCAGAAA 60.603 57.895 0.00 0.00 40.13 2.52
5606 6141 1.152652 TCCCGGCCTTTGCAGAAAA 60.153 52.632 0.00 0.00 40.13 2.29
5663 6198 0.514255 CGTTGCAGTGGACAGTGATG 59.486 55.000 11.14 0.00 33.67 3.07
5684 6219 3.204306 GATGGAAGATGCATCCTGTGA 57.796 47.619 23.06 4.37 39.00 3.58
5685 6220 2.408271 TGGAAGATGCATCCTGTGAC 57.592 50.000 23.06 8.50 37.85 3.67
5686 6221 1.911357 TGGAAGATGCATCCTGTGACT 59.089 47.619 23.06 0.00 37.85 3.41
5687 6222 2.286872 GGAAGATGCATCCTGTGACTG 58.713 52.381 23.06 0.00 33.98 3.51
5688 6223 2.286872 GAAGATGCATCCTGTGACTGG 58.713 52.381 23.06 1.59 0.00 4.00
5689 6224 1.283347 AGATGCATCCTGTGACTGGT 58.717 50.000 23.06 0.00 0.00 4.00
5690 6225 1.209019 AGATGCATCCTGTGACTGGTC 59.791 52.381 23.06 0.00 0.00 4.02
5691 6226 0.107993 ATGCATCCTGTGACTGGTCG 60.108 55.000 8.41 2.48 0.00 4.79
5692 6227 1.184970 TGCATCCTGTGACTGGTCGA 61.185 55.000 8.41 0.00 0.00 4.20
5693 6228 0.037326 GCATCCTGTGACTGGTCGAA 60.037 55.000 8.41 0.00 0.00 3.71
5694 6229 1.608025 GCATCCTGTGACTGGTCGAAA 60.608 52.381 8.41 0.00 0.00 3.46
5695 6230 2.766313 CATCCTGTGACTGGTCGAAAA 58.234 47.619 8.41 0.00 0.00 2.29
5696 6231 2.234300 TCCTGTGACTGGTCGAAAAC 57.766 50.000 8.41 0.00 0.00 2.43
5709 6244 5.372547 GGTCGAAAACCTTAGAAAGCATT 57.627 39.130 0.00 0.00 45.45 3.56
5710 6245 6.490566 GGTCGAAAACCTTAGAAAGCATTA 57.509 37.500 0.00 0.00 45.45 1.90
5711 6246 6.312487 GGTCGAAAACCTTAGAAAGCATTAC 58.688 40.000 0.00 0.00 45.45 1.89
5712 6247 6.312487 GTCGAAAACCTTAGAAAGCATTACC 58.688 40.000 0.00 0.00 0.00 2.85
5713 6248 6.148976 GTCGAAAACCTTAGAAAGCATTACCT 59.851 38.462 0.00 0.00 0.00 3.08
5714 6249 6.370718 TCGAAAACCTTAGAAAGCATTACCTC 59.629 38.462 0.00 0.00 0.00 3.85
5715 6250 6.403309 CGAAAACCTTAGAAAGCATTACCTCC 60.403 42.308 0.00 0.00 0.00 4.30
5716 6251 5.514500 AACCTTAGAAAGCATTACCTCCA 57.486 39.130 0.00 0.00 0.00 3.86
5717 6252 5.717119 ACCTTAGAAAGCATTACCTCCAT 57.283 39.130 0.00 0.00 0.00 3.41
5718 6253 5.440610 ACCTTAGAAAGCATTACCTCCATG 58.559 41.667 0.00 0.00 0.00 3.66
5719 6254 4.276926 CCTTAGAAAGCATTACCTCCATGC 59.723 45.833 0.00 0.00 46.39 4.06
5725 6260 3.825143 GCATTACCTCCATGCCAAAAT 57.175 42.857 0.00 0.00 41.13 1.82
5726 6261 4.935352 GCATTACCTCCATGCCAAAATA 57.065 40.909 0.00 0.00 41.13 1.40
5727 6262 5.275067 GCATTACCTCCATGCCAAAATAA 57.725 39.130 0.00 0.00 41.13 1.40
5728 6263 5.291971 GCATTACCTCCATGCCAAAATAAG 58.708 41.667 0.00 0.00 41.13 1.73
5729 6264 5.068987 GCATTACCTCCATGCCAAAATAAGA 59.931 40.000 0.00 0.00 41.13 2.10
5730 6265 6.239402 GCATTACCTCCATGCCAAAATAAGAT 60.239 38.462 0.00 0.00 41.13 2.40
5731 6266 6.713762 TTACCTCCATGCCAAAATAAGATG 57.286 37.500 0.00 0.00 0.00 2.90
5732 6267 3.385755 ACCTCCATGCCAAAATAAGATGC 59.614 43.478 0.00 0.00 0.00 3.91
5733 6268 3.640029 CCTCCATGCCAAAATAAGATGCT 59.360 43.478 0.00 0.00 0.00 3.79
5734 6269 4.100498 CCTCCATGCCAAAATAAGATGCTT 59.900 41.667 0.00 0.00 0.00 3.91
5735 6270 5.395990 CCTCCATGCCAAAATAAGATGCTTT 60.396 40.000 0.00 0.00 0.00 3.51
5736 6271 6.183360 CCTCCATGCCAAAATAAGATGCTTTA 60.183 38.462 0.00 0.00 0.00 1.85
5737 6272 6.808829 TCCATGCCAAAATAAGATGCTTTAG 58.191 36.000 0.00 0.00 0.00 1.85
5738 6273 6.380846 TCCATGCCAAAATAAGATGCTTTAGT 59.619 34.615 0.00 0.00 0.00 2.24
5739 6274 6.698766 CCATGCCAAAATAAGATGCTTTAGTC 59.301 38.462 0.00 0.00 0.00 2.59
5740 6275 7.417116 CCATGCCAAAATAAGATGCTTTAGTCT 60.417 37.037 0.00 0.00 0.00 3.24
5741 6276 8.623903 CATGCCAAAATAAGATGCTTTAGTCTA 58.376 33.333 0.00 0.00 0.00 2.59
5742 6277 7.985476 TGCCAAAATAAGATGCTTTAGTCTAC 58.015 34.615 0.00 0.00 0.00 2.59
5743 6278 7.609918 TGCCAAAATAAGATGCTTTAGTCTACA 59.390 33.333 0.00 0.00 0.00 2.74
5744 6279 8.458843 GCCAAAATAAGATGCTTTAGTCTACAA 58.541 33.333 0.00 0.00 0.00 2.41
5751 6286 7.835634 AGATGCTTTAGTCTACAAAACTAGC 57.164 36.000 0.00 0.00 31.75 3.42
5752 6287 6.819146 AGATGCTTTAGTCTACAAAACTAGCC 59.181 38.462 0.00 0.00 30.59 3.93
5753 6288 6.110411 TGCTTTAGTCTACAAAACTAGCCT 57.890 37.500 0.00 0.00 30.59 4.58
5754 6289 7.235935 TGCTTTAGTCTACAAAACTAGCCTA 57.764 36.000 0.00 0.00 30.59 3.93
5755 6290 7.673180 TGCTTTAGTCTACAAAACTAGCCTAA 58.327 34.615 0.00 0.00 30.59 2.69
5756 6291 8.152246 TGCTTTAGTCTACAAAACTAGCCTAAA 58.848 33.333 0.00 0.00 30.59 1.85
5757 6292 8.996271 GCTTTAGTCTACAAAACTAGCCTAAAA 58.004 33.333 0.00 0.00 28.65 1.52
5771 6306 8.214721 ACTAGCCTAAAATAAGATGTTTCAGC 57.785 34.615 0.00 0.00 0.00 4.26
5772 6307 6.456795 AGCCTAAAATAAGATGTTTCAGCC 57.543 37.500 0.00 0.00 0.00 4.85
5773 6308 6.190587 AGCCTAAAATAAGATGTTTCAGCCT 58.809 36.000 0.00 0.00 0.00 4.58
5774 6309 7.346471 AGCCTAAAATAAGATGTTTCAGCCTA 58.654 34.615 0.00 0.00 0.00 3.93
5775 6310 7.283354 AGCCTAAAATAAGATGTTTCAGCCTAC 59.717 37.037 0.00 0.00 0.00 3.18
5776 6311 7.067008 GCCTAAAATAAGATGTTTCAGCCTACA 59.933 37.037 0.00 0.00 0.00 2.74
5777 6312 8.956426 CCTAAAATAAGATGTTTCAGCCTACAA 58.044 33.333 0.00 0.00 0.00 2.41
5784 6319 6.856895 AGATGTTTCAGCCTACAAAATTAGC 58.143 36.000 0.00 0.00 0.00 3.09
5785 6320 5.385509 TGTTTCAGCCTACAAAATTAGCC 57.614 39.130 0.00 0.00 0.00 3.93
5786 6321 5.076873 TGTTTCAGCCTACAAAATTAGCCT 58.923 37.500 0.00 0.00 0.00 4.58
5787 6322 6.242396 TGTTTCAGCCTACAAAATTAGCCTA 58.758 36.000 0.00 0.00 0.00 3.93
5788 6323 6.150474 TGTTTCAGCCTACAAAATTAGCCTAC 59.850 38.462 0.00 0.00 0.00 3.18
5789 6324 5.429681 TCAGCCTACAAAATTAGCCTACA 57.570 39.130 0.00 0.00 0.00 2.74
5790 6325 5.811190 TCAGCCTACAAAATTAGCCTACAA 58.189 37.500 0.00 0.00 0.00 2.41
5791 6326 6.242396 TCAGCCTACAAAATTAGCCTACAAA 58.758 36.000 0.00 0.00 0.00 2.83
5792 6327 6.717540 TCAGCCTACAAAATTAGCCTACAAAA 59.282 34.615 0.00 0.00 0.00 2.44
5793 6328 7.231722 TCAGCCTACAAAATTAGCCTACAAAAA 59.768 33.333 0.00 0.00 0.00 1.94
5794 6329 8.034804 CAGCCTACAAAATTAGCCTACAAAAAT 58.965 33.333 0.00 0.00 0.00 1.82
5795 6330 8.034804 AGCCTACAAAATTAGCCTACAAAAATG 58.965 33.333 0.00 0.00 0.00 2.32
5796 6331 7.817478 GCCTACAAAATTAGCCTACAAAAATGT 59.183 33.333 0.00 0.00 0.00 2.71
5797 6332 9.353999 CCTACAAAATTAGCCTACAAAAATGTC 57.646 33.333 0.00 0.00 0.00 3.06
5876 6412 5.705609 TTGATTTGGACCTAAGAAACAGC 57.294 39.130 0.00 0.00 0.00 4.40
5877 6413 4.724399 TGATTTGGACCTAAGAAACAGCA 58.276 39.130 0.00 0.00 0.00 4.41
5887 6423 0.947244 AGAAACAGCAGGCGACTTTG 59.053 50.000 0.00 0.00 40.21 2.77
5907 6443 6.723977 ACTTTGGATTAGCAAAACCATTAGGA 59.276 34.615 0.00 0.00 37.39 2.94
5909 6445 7.546250 TTGGATTAGCAAAACCATTAGGAAA 57.454 32.000 0.00 0.00 37.39 3.13
5910 6446 7.546250 TGGATTAGCAAAACCATTAGGAAAA 57.454 32.000 0.00 0.00 32.96 2.29
5911 6447 7.967908 TGGATTAGCAAAACCATTAGGAAAAA 58.032 30.769 0.00 0.00 32.96 1.94
5943 6479 8.873830 CATGTGTTATTTACTAGTGGAGAACAG 58.126 37.037 16.10 6.18 0.00 3.16
5952 6488 4.586001 ACTAGTGGAGAACAGAACGGTTTA 59.414 41.667 0.00 0.00 0.00 2.01
5957 6493 3.186613 GGAGAACAGAACGGTTTAGCAAG 59.813 47.826 0.00 0.00 0.00 4.01
6004 6540 6.016693 TCACGGATTGTTTTGCAGAAGAAATA 60.017 34.615 3.59 0.00 0.00 1.40
6006 6542 6.016276 ACGGATTGTTTTGCAGAAGAAATAGT 60.016 34.615 3.59 2.07 0.00 2.12
6021 6557 8.457261 AGAAGAAATAGTGATTCAATCAGCAAC 58.543 33.333 0.00 0.00 40.53 4.17
6104 6644 5.295787 GCAATGAAATTACGGTGGATGTAGA 59.704 40.000 0.00 0.00 32.46 2.59
6128 6668 5.873712 ACATTTTGAACATGACAAGCAAACA 59.126 32.000 0.00 0.00 0.00 2.83
6133 6673 5.577835 TGAACATGACAAGCAAACAACTAC 58.422 37.500 0.00 0.00 0.00 2.73
6134 6674 5.356751 TGAACATGACAAGCAAACAACTACT 59.643 36.000 0.00 0.00 0.00 2.57
6135 6675 5.424121 ACATGACAAGCAAACAACTACTC 57.576 39.130 0.00 0.00 0.00 2.59
6136 6676 4.275936 ACATGACAAGCAAACAACTACTCC 59.724 41.667 0.00 0.00 0.00 3.85
6137 6677 3.211045 TGACAAGCAAACAACTACTCCC 58.789 45.455 0.00 0.00 0.00 4.30
6138 6678 3.118038 TGACAAGCAAACAACTACTCCCT 60.118 43.478 0.00 0.00 0.00 4.20
6139 6679 3.477530 ACAAGCAAACAACTACTCCCTC 58.522 45.455 0.00 0.00 0.00 4.30
6140 6680 2.814336 CAAGCAAACAACTACTCCCTCC 59.186 50.000 0.00 0.00 0.00 4.30
6141 6681 1.002087 AGCAAACAACTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
6142 6682 1.270678 GCAAACAACTACTCCCTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
6143 6683 2.685100 CAAACAACTACTCCCTCCGTC 58.315 52.381 0.00 0.00 0.00 4.79
6144 6684 1.264295 AACAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
6145 6685 0.614134 ACAACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
6146 6686 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
6147 6687 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
6148 6688 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6149 6689 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6150 6690 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6151 6691 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
6152 6692 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6153 6693 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6154 6694 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6155 6695 5.600749 ACTCCCTCCGTCCCATAATATAAT 58.399 41.667 0.00 0.00 0.00 1.28
6156 6696 6.748969 ACTCCCTCCGTCCCATAATATAATA 58.251 40.000 0.00 0.00 0.00 0.98
6157 6697 7.194050 ACTCCCTCCGTCCCATAATATAATAA 58.806 38.462 0.00 0.00 0.00 1.40
6158 6698 7.125356 ACTCCCTCCGTCCCATAATATAATAAC 59.875 40.741 0.00 0.00 0.00 1.89
6159 6699 6.961131 TCCCTCCGTCCCATAATATAATAACA 59.039 38.462 0.00 0.00 0.00 2.41
6160 6700 7.626084 TCCCTCCGTCCCATAATATAATAACAT 59.374 37.037 0.00 0.00 0.00 2.71
6161 6701 8.272173 CCCTCCGTCCCATAATATAATAACATT 58.728 37.037 0.00 0.00 0.00 2.71
6162 6702 9.681062 CCTCCGTCCCATAATATAATAACATTT 57.319 33.333 0.00 0.00 0.00 2.32
6177 6717 9.926158 ATAATAACATTTGAACATGACAAGCAA 57.074 25.926 0.00 0.00 0.00 3.91
6178 6718 8.659925 AATAACATTTGAACATGACAAGCAAA 57.340 26.923 0.00 2.94 33.59 3.68
6179 6719 5.971895 ACATTTGAACATGACAAGCAAAC 57.028 34.783 0.00 0.00 32.09 2.93
6180 6720 5.417811 ACATTTGAACATGACAAGCAAACA 58.582 33.333 0.00 0.00 32.09 2.83
6181 6721 5.873712 ACATTTGAACATGACAAGCAAACAA 59.126 32.000 0.00 0.00 32.09 2.83
6182 6722 5.776519 TTTGAACATGACAAGCAAACAAC 57.223 34.783 0.00 0.00 0.00 3.32
6183 6723 4.717233 TGAACATGACAAGCAAACAACT 57.283 36.364 0.00 0.00 0.00 3.16
6184 6724 5.826601 TGAACATGACAAGCAAACAACTA 57.173 34.783 0.00 0.00 0.00 2.24
6185 6725 5.577835 TGAACATGACAAGCAAACAACTAC 58.422 37.500 0.00 0.00 0.00 2.73
6186 6726 5.356751 TGAACATGACAAGCAAACAACTACT 59.643 36.000 0.00 0.00 0.00 2.57
6187 6727 5.424121 ACATGACAAGCAAACAACTACTC 57.576 39.130 0.00 0.00 0.00 2.59
6188 6728 4.275936 ACATGACAAGCAAACAACTACTCC 59.724 41.667 0.00 0.00 0.00 3.85
6189 6729 3.211045 TGACAAGCAAACAACTACTCCC 58.789 45.455 0.00 0.00 0.00 4.30
6190 6730 3.118038 TGACAAGCAAACAACTACTCCCT 60.118 43.478 0.00 0.00 0.00 4.20
6191 6731 3.477530 ACAAGCAAACAACTACTCCCTC 58.522 45.455 0.00 0.00 0.00 4.30
6192 6732 2.814336 CAAGCAAACAACTACTCCCTCC 59.186 50.000 0.00 0.00 0.00 4.30
6193 6733 1.002087 AGCAAACAACTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
6194 6734 1.270678 GCAAACAACTACTCCCTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
6195 6735 2.685100 CAAACAACTACTCCCTCCGTC 58.315 52.381 0.00 0.00 0.00 4.79
6196 6736 1.264295 AACAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
6197 6737 0.614134 ACAACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
6198 6738 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
6199 6739 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
6200 6740 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6201 6741 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6202 6742 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6203 6743 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
6204 6744 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6205 6745 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6206 6746 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6207 6747 5.600749 ACTCCCTCCGTCCCATAATATAAT 58.399 41.667 0.00 0.00 0.00 1.28
6208 6748 6.748969 ACTCCCTCCGTCCCATAATATAATA 58.251 40.000 0.00 0.00 0.00 0.98
6209 6749 7.194050 ACTCCCTCCGTCCCATAATATAATAA 58.806 38.462 0.00 0.00 0.00 1.40
6210 6750 7.125356 ACTCCCTCCGTCCCATAATATAATAAC 59.875 40.741 0.00 0.00 0.00 1.89
6211 6751 6.961131 TCCCTCCGTCCCATAATATAATAACA 59.039 38.462 0.00 0.00 0.00 2.41
6212 6752 7.626084 TCCCTCCGTCCCATAATATAATAACAT 59.374 37.037 0.00 0.00 0.00 2.71
6213 6753 8.272173 CCCTCCGTCCCATAATATAATAACATT 58.728 37.037 0.00 0.00 0.00 2.71
6214 6754 9.681062 CCTCCGTCCCATAATATAATAACATTT 57.319 33.333 0.00 0.00 0.00 2.32
6256 6796 6.375455 ACCCTTGCTGAAACAATATTAGACAG 59.625 38.462 0.00 0.00 0.00 3.51
6263 6803 8.816144 GCTGAAACAATATTAGACAGAAGAGAG 58.184 37.037 12.19 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.906199 AGAAAGGCAGTATCTTATCTACACT 57.094 36.000 0.00 0.00 0.00 3.55
9 10 9.819267 GTAGTGTTATAAGAAAGGCAGTATCTT 57.181 33.333 0.00 0.00 37.23 2.40
10 11 8.422566 GGTAGTGTTATAAGAAAGGCAGTATCT 58.577 37.037 0.00 0.00 0.00 1.98
11 12 8.422566 AGGTAGTGTTATAAGAAAGGCAGTATC 58.577 37.037 0.00 0.00 0.00 2.24
12 13 8.320338 AGGTAGTGTTATAAGAAAGGCAGTAT 57.680 34.615 0.00 0.00 0.00 2.12
13 14 7.729124 AGGTAGTGTTATAAGAAAGGCAGTA 57.271 36.000 0.00 0.00 0.00 2.74
14 15 6.622427 AGGTAGTGTTATAAGAAAGGCAGT 57.378 37.500 0.00 0.00 0.00 4.40
15 16 8.421784 TGATAGGTAGTGTTATAAGAAAGGCAG 58.578 37.037 0.00 0.00 0.00 4.85
16 17 8.313944 TGATAGGTAGTGTTATAAGAAAGGCA 57.686 34.615 0.00 0.00 0.00 4.75
17 18 9.043079 GTTGATAGGTAGTGTTATAAGAAAGGC 57.957 37.037 0.00 0.00 0.00 4.35
26 27 9.435570 AGGTATGAAGTTGATAGGTAGTGTTAT 57.564 33.333 0.00 0.00 0.00 1.89
27 28 8.834004 AGGTATGAAGTTGATAGGTAGTGTTA 57.166 34.615 0.00 0.00 0.00 2.41
28 29 7.735326 AGGTATGAAGTTGATAGGTAGTGTT 57.265 36.000 0.00 0.00 0.00 3.32
29 30 8.834004 TTAGGTATGAAGTTGATAGGTAGTGT 57.166 34.615 0.00 0.00 0.00 3.55
49 50 8.927411 AGCCAAGCATTCAATAAATATTTAGGT 58.073 29.630 13.15 1.90 0.00 3.08
50 51 9.768662 AAGCCAAGCATTCAATAAATATTTAGG 57.231 29.630 13.15 8.28 0.00 2.69
52 53 9.044150 GCAAGCCAAGCATTCAATAAATATTTA 57.956 29.630 10.27 10.27 0.00 1.40
53 54 7.012610 GGCAAGCCAAGCATTCAATAAATATTT 59.987 33.333 6.14 5.89 35.81 1.40
54 55 6.484308 GGCAAGCCAAGCATTCAATAAATATT 59.516 34.615 6.14 0.00 35.81 1.28
55 56 5.993441 GGCAAGCCAAGCATTCAATAAATAT 59.007 36.000 6.14 0.00 35.81 1.28
56 57 5.358922 GGCAAGCCAAGCATTCAATAAATA 58.641 37.500 6.14 0.00 35.81 1.40
57 58 4.193865 GGCAAGCCAAGCATTCAATAAAT 58.806 39.130 6.14 0.00 35.81 1.40
58 59 3.598299 GGCAAGCCAAGCATTCAATAAA 58.402 40.909 6.14 0.00 35.81 1.40
59 60 2.093553 GGGCAAGCCAAGCATTCAATAA 60.094 45.455 13.87 0.00 37.98 1.40
60 61 1.481772 GGGCAAGCCAAGCATTCAATA 59.518 47.619 13.87 0.00 37.98 1.90
61 62 0.251073 GGGCAAGCCAAGCATTCAAT 59.749 50.000 13.87 0.00 37.98 2.57
62 63 0.832983 AGGGCAAGCCAAGCATTCAA 60.833 50.000 13.87 0.00 37.98 2.69
63 64 1.228956 AGGGCAAGCCAAGCATTCA 60.229 52.632 13.87 0.00 37.98 2.57
64 65 1.514553 GAGGGCAAGCCAAGCATTC 59.485 57.895 13.87 0.00 37.98 2.67
65 66 2.345760 CGAGGGCAAGCCAAGCATT 61.346 57.895 13.87 0.00 37.98 3.56
66 67 2.753043 CGAGGGCAAGCCAAGCAT 60.753 61.111 13.87 0.00 37.98 3.79
73 74 3.752339 CAAAGGGCGAGGGCAAGC 61.752 66.667 0.00 0.00 42.47 4.01
74 75 3.752339 GCAAAGGGCGAGGGCAAG 61.752 66.667 0.00 0.00 42.47 4.01
83 84 2.125952 GTCAATGGCGCAAAGGGC 60.126 61.111 10.83 0.00 40.84 5.19
84 85 2.179018 CGTCAATGGCGCAAAGGG 59.821 61.111 10.83 0.00 0.00 3.95
91 92 2.176546 CCTGTTGCGTCAATGGCG 59.823 61.111 1.57 1.57 0.00 5.69
92 93 1.210155 GACCTGTTGCGTCAATGGC 59.790 57.895 11.38 0.00 0.00 4.40
93 94 1.131126 GATGACCTGTTGCGTCAATGG 59.869 52.381 0.00 10.50 43.16 3.16
94 95 2.079158 AGATGACCTGTTGCGTCAATG 58.921 47.619 0.00 0.00 43.16 2.82
95 96 2.479566 AGATGACCTGTTGCGTCAAT 57.520 45.000 0.00 0.00 43.16 2.57
96 97 2.299013 ACTAGATGACCTGTTGCGTCAA 59.701 45.455 0.00 0.00 43.16 3.18
97 98 1.893137 ACTAGATGACCTGTTGCGTCA 59.107 47.619 0.00 0.00 44.00 4.35
98 99 2.656560 ACTAGATGACCTGTTGCGTC 57.343 50.000 0.00 0.00 0.00 5.19
99 100 2.823747 TGTACTAGATGACCTGTTGCGT 59.176 45.455 0.00 0.00 0.00 5.24
100 101 3.119459 AGTGTACTAGATGACCTGTTGCG 60.119 47.826 0.00 0.00 0.00 4.85
101 102 4.082190 TGAGTGTACTAGATGACCTGTTGC 60.082 45.833 0.00 0.00 0.00 4.17
102 103 5.644977 TGAGTGTACTAGATGACCTGTTG 57.355 43.478 0.00 0.00 0.00 3.33
103 104 6.295349 CCTTTGAGTGTACTAGATGACCTGTT 60.295 42.308 0.00 0.00 0.00 3.16
104 105 5.186021 CCTTTGAGTGTACTAGATGACCTGT 59.814 44.000 0.00 0.00 0.00 4.00
105 106 5.419155 TCCTTTGAGTGTACTAGATGACCTG 59.581 44.000 0.00 0.00 0.00 4.00
106 107 5.419471 GTCCTTTGAGTGTACTAGATGACCT 59.581 44.000 0.00 0.00 0.00 3.85
107 108 5.652518 GTCCTTTGAGTGTACTAGATGACC 58.347 45.833 0.00 0.00 0.00 4.02
108 109 5.123502 TCGTCCTTTGAGTGTACTAGATGAC 59.876 44.000 0.00 0.00 0.00 3.06
109 110 5.250982 TCGTCCTTTGAGTGTACTAGATGA 58.749 41.667 0.00 0.00 0.00 2.92
110 111 5.562506 TCGTCCTTTGAGTGTACTAGATG 57.437 43.478 0.00 0.00 0.00 2.90
111 112 6.208994 ACTTTCGTCCTTTGAGTGTACTAGAT 59.791 38.462 0.00 0.00 0.00 1.98
112 113 5.533903 ACTTTCGTCCTTTGAGTGTACTAGA 59.466 40.000 0.00 0.00 0.00 2.43
113 114 5.629849 CACTTTCGTCCTTTGAGTGTACTAG 59.370 44.000 0.00 0.00 34.51 2.57
114 115 5.068198 ACACTTTCGTCCTTTGAGTGTACTA 59.932 40.000 5.72 0.00 46.41 1.82
115 116 4.142004 ACACTTTCGTCCTTTGAGTGTACT 60.142 41.667 5.72 0.00 46.41 2.73
116 117 4.117685 ACACTTTCGTCCTTTGAGTGTAC 58.882 43.478 5.72 0.00 46.41 2.90
117 118 4.395959 ACACTTTCGTCCTTTGAGTGTA 57.604 40.909 5.72 0.00 46.41 2.90
118 119 3.261981 ACACTTTCGTCCTTTGAGTGT 57.738 42.857 1.90 1.90 44.28 3.55
284 285 4.026640 CACTCATTTTCTTTTTGGCACACG 60.027 41.667 0.00 0.00 39.29 4.49
297 298 5.291971 ACACATTTTGGAGCACTCATTTTC 58.708 37.500 0.00 0.00 0.00 2.29
359 360 9.749490 CAATTTTTACATTGAAATGACATCTGC 57.251 29.630 9.94 0.00 39.67 4.26
361 362 8.938906 GCCAATTTTTACATTGAAATGACATCT 58.061 29.630 9.94 0.00 39.67 2.90
391 392 7.215696 TGAACATCAACAAATTTTCGAACAC 57.784 32.000 0.00 0.00 0.00 3.32
435 436 4.271049 CACCCGCATGAACAGTAATTCTAG 59.729 45.833 0.00 0.00 0.00 2.43
438 439 2.747446 ACACCCGCATGAACAGTAATTC 59.253 45.455 0.00 0.00 0.00 2.17
439 440 2.790433 ACACCCGCATGAACAGTAATT 58.210 42.857 0.00 0.00 0.00 1.40
467 470 4.380531 GACATGGATAATCTGCTTCCGAA 58.619 43.478 0.00 0.00 31.90 4.30
506 509 2.547218 GCCTACTCGTTGTCACCAAGAA 60.547 50.000 0.00 0.00 0.00 2.52
533 536 5.670792 TCCTAACCGTAGTTCATTGTGAT 57.329 39.130 0.00 0.00 37.42 3.06
565 568 9.313118 GGTTATGTTGATTATGGTGAAATTTCC 57.687 33.333 15.48 6.89 0.00 3.13
575 578 6.455360 AGCAGTTGGTTATGTTGATTATGG 57.545 37.500 0.00 0.00 0.00 2.74
619 622 0.462225 TTTTGTCCCGCGTCACTTCA 60.462 50.000 4.92 0.00 0.00 3.02
651 655 4.881273 TGTAAATATCACTGCAAGGCGATT 59.119 37.500 0.00 0.00 39.30 3.34
687 691 6.993786 TTGCACGAGGTATTAAAATGATCA 57.006 33.333 0.00 0.00 0.00 2.92
726 731 2.719531 TTGCAACTGGTTGTGGAGTA 57.280 45.000 13.85 0.00 42.31 2.59
788 793 5.358160 GCCTAGATTATGCACTGGTTTTTCT 59.642 40.000 0.00 0.00 0.00 2.52
789 794 5.450550 GGCCTAGATTATGCACTGGTTTTTC 60.451 44.000 0.00 0.00 0.00 2.29
790 795 4.402474 GGCCTAGATTATGCACTGGTTTTT 59.598 41.667 0.00 0.00 0.00 1.94
856 862 4.108699 TCGATGTGGAATGGAAAAATGC 57.891 40.909 0.00 0.00 0.00 3.56
896 902 2.629617 AGAGATTTTGTGTGGGCTTTGG 59.370 45.455 0.00 0.00 0.00 3.28
930 936 1.598130 GTGGTGACTGGTGACCTGC 60.598 63.158 8.54 2.55 37.75 4.85
956 962 2.903357 CCGATCTGGGGGAGTGTG 59.097 66.667 0.00 0.00 0.00 3.82
959 965 2.041265 AAGCCGATCTGGGGGAGT 59.959 61.111 5.87 0.00 38.63 3.85
1255 1291 8.423349 CCTACTAGCCACGACTAGATAGTATAT 58.577 40.741 15.40 0.00 41.92 0.86
1421 1460 0.109723 GACAAACCCCTACAGCCACA 59.890 55.000 0.00 0.00 0.00 4.17
1426 1465 4.514066 GTGTAAACTGACAAACCCCTACAG 59.486 45.833 0.00 0.00 35.14 2.74
1455 1494 8.798859 ACAAATGAGATACAGATTTACAAGCT 57.201 30.769 0.00 0.00 0.00 3.74
1480 1519 3.284617 CTGAGGAAATGGCATGACATGA 58.715 45.455 16.63 0.00 0.00 3.07
1497 1536 6.922247 ATGTTCATTCATCTTGCTACTGAG 57.078 37.500 0.00 0.00 0.00 3.35
1499 1538 7.279536 ACACTATGTTCATTCATCTTGCTACTG 59.720 37.037 0.00 0.00 0.00 2.74
1500 1539 7.334090 ACACTATGTTCATTCATCTTGCTACT 58.666 34.615 0.00 0.00 0.00 2.57
1508 1547 7.227314 TCAGGCATAACACTATGTTCATTCATC 59.773 37.037 0.00 0.00 40.22 2.92
1522 1561 4.818546 AGAAGCACATATCAGGCATAACAC 59.181 41.667 0.00 0.00 0.00 3.32
1573 1612 2.038426 TGGAGATCGAAAACTTCTGGCA 59.962 45.455 0.00 0.00 0.00 4.92
1613 1652 3.246619 CTTTGTCTAGAAGTCGCTGGTC 58.753 50.000 0.00 0.00 0.00 4.02
1653 1692 3.994392 ACACATTTTACTGCACTCTACCG 59.006 43.478 0.00 0.00 0.00 4.02
1671 1710 6.206634 GGAGAACAAACAGATAATTGGACACA 59.793 38.462 0.00 0.00 0.00 3.72
1672 1711 6.431234 AGGAGAACAAACAGATAATTGGACAC 59.569 38.462 0.00 0.00 0.00 3.67
1678 1717 9.667107 TCGAAATAGGAGAACAAACAGATAATT 57.333 29.630 0.00 0.00 0.00 1.40
1693 1732 4.921515 TCTCGTGTTTTGTCGAAATAGGAG 59.078 41.667 18.80 18.80 45.18 3.69
1713 1752 5.578727 CAGTGAACCTATACACAAAGCTCTC 59.421 44.000 0.00 0.00 39.18 3.20
1746 1785 4.148079 TGGATTGTAGACCACATTTTGCA 58.852 39.130 0.00 0.00 36.90 4.08
1747 1786 4.782019 TGGATTGTAGACCACATTTTGC 57.218 40.909 0.00 0.00 36.90 3.68
1800 1839 1.904287 ATGCGCTTAGGGTTTTGTCA 58.096 45.000 9.73 0.00 0.00 3.58
1803 1842 1.742831 TGCTATGCGCTTAGGGTTTTG 59.257 47.619 26.16 5.92 40.11 2.44
1804 1843 2.122783 TGCTATGCGCTTAGGGTTTT 57.877 45.000 26.16 0.00 40.11 2.43
1863 1902 5.645624 ACATGTCTCGATTAACAGTGAGAG 58.354 41.667 0.00 0.00 38.10 3.20
2067 2106 5.924825 ACTAAGTCTTGTAAAACAGCTACGG 59.075 40.000 0.00 0.00 0.00 4.02
2133 2172 6.092807 GGATAACAGGATTCACAGACTTTGAC 59.907 42.308 0.00 0.00 0.00 3.18
2203 2244 4.411256 TGTCTAACGAAAAGGACCACTT 57.589 40.909 0.00 0.00 42.52 3.16
2252 2293 6.935741 ACAACTAAAAGCACAACTGATACA 57.064 33.333 0.00 0.00 0.00 2.29
2297 2338 3.507622 CAGGGTTAAGGGCTGAAAAAGAG 59.492 47.826 0.00 0.00 0.00 2.85
2299 2340 3.496331 TCAGGGTTAAGGGCTGAAAAAG 58.504 45.455 0.00 0.00 0.00 2.27
2309 2350 2.514458 ACCATTGCTCAGGGTTAAGG 57.486 50.000 0.00 0.00 0.00 2.69
2322 2363 5.163581 CCTGGAGCTTGAATTCTAACCATTG 60.164 44.000 7.05 1.50 0.00 2.82
2454 2495 8.696374 ACGCAGTAACAATATATCTGCCTATAT 58.304 33.333 14.44 0.00 45.60 0.86
2478 2519 7.589395 ACAGACATGCTAGAAGATAATCTACG 58.411 38.462 0.00 0.00 0.00 3.51
2524 2565 5.873164 AGGTGAATTCAGTAACCAATACGTC 59.127 40.000 8.80 0.00 39.62 4.34
2549 2590 8.627487 TTGTTAACATGAACAACAGAAATCAC 57.373 30.769 9.56 0.00 42.84 3.06
2584 2625 6.618287 TGGTATGAAAGTTGAGTGACAAAG 57.382 37.500 0.00 0.00 40.36 2.77
2622 2663 7.377928 GCGTCATTTTGGATTCTTTATGATCTG 59.622 37.037 0.00 0.00 0.00 2.90
2743 2785 5.065218 CAGGTAAAATCGCTTGCATAAGACT 59.935 40.000 0.00 0.00 35.92 3.24
2756 2798 4.142687 ACGAAAATCTGCCAGGTAAAATCG 60.143 41.667 0.00 0.00 0.00 3.34
2853 2895 4.020662 GGCAGAGATATCTTAGGACTTGGG 60.021 50.000 6.70 0.00 0.00 4.12
2913 2955 8.465999 ACGGCATTCATTTAGTTATTCATTTGA 58.534 29.630 0.00 0.00 0.00 2.69
2925 2967 5.541845 TCAGGATCTACGGCATTCATTTAG 58.458 41.667 0.00 0.00 0.00 1.85
2932 2974 3.326006 ACATCATCAGGATCTACGGCATT 59.674 43.478 0.00 0.00 32.57 3.56
3039 3089 8.464770 TGTGTTTGCTTGATAAAAATAGCATC 57.535 30.769 0.00 0.00 42.60 3.91
3153 3203 0.519519 TGTTTGCTTACGGGCGAATG 59.480 50.000 0.00 0.00 37.82 2.67
4302 4355 1.415659 CAACCCCAGCAATTCACCAAA 59.584 47.619 0.00 0.00 0.00 3.28
4309 4362 1.648116 ATTGAGCAACCCCAGCAATT 58.352 45.000 0.00 0.00 0.00 2.32
4327 4380 1.619827 CAACTTCACCCATGTGGCAAT 59.380 47.619 0.00 0.00 42.98 3.56
4347 4400 4.023450 TGCAAAGATATCATGCTTAGCAGC 60.023 41.667 24.91 6.92 43.65 5.25
4382 4435 9.916397 CTTGATGGTTTATCGACTGTATAAAAC 57.084 33.333 4.78 4.78 38.71 2.43
4500 4553 4.919754 GCATGTTCAGAAATGTCAGAAACC 59.080 41.667 0.00 0.00 31.77 3.27
4636 4689 9.853177 AAAGGTCTCCTAATAATCCAATTACAG 57.147 33.333 0.00 0.00 31.13 2.74
4727 4780 6.324770 CCCTGTGAATAATCCTTTGCCTTATT 59.675 38.462 0.00 0.00 0.00 1.40
4986 5288 2.224670 TGAAGAAGCGGCTAAAAGGGAA 60.225 45.455 1.35 0.00 0.00 3.97
4987 5289 1.349688 TGAAGAAGCGGCTAAAAGGGA 59.650 47.619 1.35 0.00 0.00 4.20
5048 5350 3.746045 TCTGCCGTGTATCCTAAATCC 57.254 47.619 0.00 0.00 0.00 3.01
5394 5927 3.680937 CGACGCATAAAAGAAACCCACTA 59.319 43.478 0.00 0.00 0.00 2.74
5413 5946 3.414700 CCGCACAGCAGTTCCGAC 61.415 66.667 1.34 0.00 0.00 4.79
5415 5948 3.414700 GTCCGCACAGCAGTTCCG 61.415 66.667 0.00 0.00 0.00 4.30
5416 5949 3.414700 CGTCCGCACAGCAGTTCC 61.415 66.667 0.00 0.00 0.00 3.62
5417 5950 1.291877 AATCGTCCGCACAGCAGTTC 61.292 55.000 0.00 0.00 0.00 3.01
5418 5951 1.291877 GAATCGTCCGCACAGCAGTT 61.292 55.000 0.00 0.00 0.00 3.16
5419 5952 1.738099 GAATCGTCCGCACAGCAGT 60.738 57.895 0.00 0.00 0.00 4.40
5420 5953 2.456119 GGAATCGTCCGCACAGCAG 61.456 63.158 0.00 0.00 33.05 4.24
5421 5954 2.434185 GGAATCGTCCGCACAGCA 60.434 61.111 0.00 0.00 33.05 4.41
5429 5962 2.990066 ATGACCTGAAGGAATCGTCC 57.010 50.000 2.62 0.00 45.35 4.79
5430 5963 5.601662 TGAATATGACCTGAAGGAATCGTC 58.398 41.667 2.62 0.00 38.94 4.20
5431 5964 5.614324 TGAATATGACCTGAAGGAATCGT 57.386 39.130 2.62 0.00 38.94 3.73
5432 5965 6.925610 TTTGAATATGACCTGAAGGAATCG 57.074 37.500 2.62 0.00 38.94 3.34
5433 5966 7.723172 AGGATTTGAATATGACCTGAAGGAATC 59.277 37.037 2.62 0.00 38.94 2.52
5434 5967 7.504911 CAGGATTTGAATATGACCTGAAGGAAT 59.495 37.037 2.62 0.00 45.02 3.01
5448 5981 0.817634 CGGCCGGCAGGATTTGAATA 60.818 55.000 30.85 0.00 41.02 1.75
5467 6000 6.401153 CGTTAGCCTCTGATAAAATAATCGCC 60.401 42.308 0.00 0.00 0.00 5.54
5484 6017 3.448660 ACGGGAATAGTAAACGTTAGCCT 59.551 43.478 0.00 0.05 33.54 4.58
5505 6038 2.007608 GACCTCAAATACCCGCTGAAC 58.992 52.381 0.00 0.00 0.00 3.18
5512 6045 5.353400 CGTCCTTAAAAGACCTCAAATACCC 59.647 44.000 0.00 0.00 0.00 3.69
5520 6053 5.166398 TCGAATTCGTCCTTAAAAGACCTC 58.834 41.667 25.93 0.00 40.80 3.85
5522 6055 5.851047 TTCGAATTCGTCCTTAAAAGACC 57.149 39.130 25.93 0.00 40.80 3.85
5543 6078 7.971183 ACAAAACACAACCAACAAATACTTT 57.029 28.000 0.00 0.00 0.00 2.66
5548 6083 9.877178 TTATCTAACAAAACACAACCAACAAAT 57.123 25.926 0.00 0.00 0.00 2.32
5551 6086 6.967767 CGTTATCTAACAAAACACAACCAACA 59.032 34.615 1.41 0.00 35.99 3.33
5553 6088 6.318144 TCCGTTATCTAACAAAACACAACCAA 59.682 34.615 1.41 0.00 35.99 3.67
5620 6155 8.412456 ACGTGCATATTGATTTTGAATTATCCA 58.588 29.630 0.00 0.00 0.00 3.41
5644 6179 0.514255 CATCACTGTCCACTGCAACG 59.486 55.000 0.00 0.00 0.00 4.10
5651 6186 2.237143 TCTTCCATCCATCACTGTCCAC 59.763 50.000 0.00 0.00 0.00 4.02
5688 6223 6.148976 AGGTAATGCTTTCTAAGGTTTTCGAC 59.851 38.462 0.00 0.00 0.00 4.20
5689 6224 6.235664 AGGTAATGCTTTCTAAGGTTTTCGA 58.764 36.000 0.00 0.00 0.00 3.71
5690 6225 6.403309 GGAGGTAATGCTTTCTAAGGTTTTCG 60.403 42.308 0.00 0.00 0.00 3.46
5691 6226 6.433093 TGGAGGTAATGCTTTCTAAGGTTTTC 59.567 38.462 0.00 0.00 0.00 2.29
5692 6227 6.311735 TGGAGGTAATGCTTTCTAAGGTTTT 58.688 36.000 0.00 0.00 0.00 2.43
5693 6228 5.887754 TGGAGGTAATGCTTTCTAAGGTTT 58.112 37.500 0.00 0.00 0.00 3.27
5694 6229 5.514500 TGGAGGTAATGCTTTCTAAGGTT 57.486 39.130 0.00 0.00 0.00 3.50
5695 6230 5.440610 CATGGAGGTAATGCTTTCTAAGGT 58.559 41.667 0.00 0.00 0.00 3.50
5696 6231 4.276926 GCATGGAGGTAATGCTTTCTAAGG 59.723 45.833 0.00 0.00 45.62 2.69
5697 6232 5.429957 GCATGGAGGTAATGCTTTCTAAG 57.570 43.478 0.00 0.00 45.62 2.18
5706 6241 6.713762 TCTTATTTTGGCATGGAGGTAATG 57.286 37.500 0.00 0.00 0.00 1.90
5707 6242 6.239402 GCATCTTATTTTGGCATGGAGGTAAT 60.239 38.462 0.00 0.00 0.00 1.89
5708 6243 5.068987 GCATCTTATTTTGGCATGGAGGTAA 59.931 40.000 0.00 0.00 0.00 2.85
5709 6244 4.584325 GCATCTTATTTTGGCATGGAGGTA 59.416 41.667 0.00 0.00 0.00 3.08
5710 6245 3.385755 GCATCTTATTTTGGCATGGAGGT 59.614 43.478 0.00 0.00 0.00 3.85
5711 6246 3.640029 AGCATCTTATTTTGGCATGGAGG 59.360 43.478 0.00 0.00 0.00 4.30
5712 6247 4.931661 AGCATCTTATTTTGGCATGGAG 57.068 40.909 0.00 0.00 0.00 3.86
5713 6248 5.680594 AAAGCATCTTATTTTGGCATGGA 57.319 34.783 0.00 0.00 0.00 3.41
5714 6249 6.576185 ACTAAAGCATCTTATTTTGGCATGG 58.424 36.000 0.00 0.00 0.00 3.66
5715 6250 7.486647 AGACTAAAGCATCTTATTTTGGCATG 58.513 34.615 0.00 0.00 0.00 4.06
5716 6251 7.651027 AGACTAAAGCATCTTATTTTGGCAT 57.349 32.000 0.00 0.00 0.00 4.40
5717 6252 7.609918 TGTAGACTAAAGCATCTTATTTTGGCA 59.390 33.333 0.00 0.00 0.00 4.92
5718 6253 7.985476 TGTAGACTAAAGCATCTTATTTTGGC 58.015 34.615 0.00 0.00 0.00 4.52
5725 6260 9.367444 GCTAGTTTTGTAGACTAAAGCATCTTA 57.633 33.333 0.00 0.00 31.90 2.10
5726 6261 7.334671 GGCTAGTTTTGTAGACTAAAGCATCTT 59.665 37.037 0.00 0.00 32.77 2.40
5727 6262 6.819146 GGCTAGTTTTGTAGACTAAAGCATCT 59.181 38.462 0.00 0.00 32.77 2.90
5728 6263 6.819146 AGGCTAGTTTTGTAGACTAAAGCATC 59.181 38.462 0.00 0.00 36.54 3.91
5729 6264 6.712276 AGGCTAGTTTTGTAGACTAAAGCAT 58.288 36.000 0.00 0.00 36.54 3.79
5730 6265 6.110411 AGGCTAGTTTTGTAGACTAAAGCA 57.890 37.500 0.00 0.00 36.54 3.91
5745 6280 8.678199 GCTGAAACATCTTATTTTAGGCTAGTT 58.322 33.333 0.00 0.00 0.00 2.24
5746 6281 7.283354 GGCTGAAACATCTTATTTTAGGCTAGT 59.717 37.037 8.09 0.00 41.88 2.57
5747 6282 7.643579 GGCTGAAACATCTTATTTTAGGCTAG 58.356 38.462 8.09 0.00 41.88 3.42
5748 6283 7.568199 GGCTGAAACATCTTATTTTAGGCTA 57.432 36.000 8.09 0.00 41.88 3.93
5749 6284 6.190587 AGGCTGAAACATCTTATTTTAGGCT 58.809 36.000 11.07 11.07 46.81 4.58
5750 6285 6.456795 AGGCTGAAACATCTTATTTTAGGC 57.543 37.500 7.46 7.46 44.01 3.93
5751 6286 8.506168 TGTAGGCTGAAACATCTTATTTTAGG 57.494 34.615 0.00 0.00 0.00 2.69
5758 6293 8.458843 GCTAATTTTGTAGGCTGAAACATCTTA 58.541 33.333 0.00 0.00 0.00 2.10
5759 6294 7.315890 GCTAATTTTGTAGGCTGAAACATCTT 58.684 34.615 0.00 0.00 0.00 2.40
5760 6295 6.127619 GGCTAATTTTGTAGGCTGAAACATCT 60.128 38.462 0.00 0.00 42.05 2.90
5761 6296 6.036470 GGCTAATTTTGTAGGCTGAAACATC 58.964 40.000 0.00 0.00 42.05 3.06
5762 6297 5.965922 GGCTAATTTTGTAGGCTGAAACAT 58.034 37.500 0.00 0.00 42.05 2.71
5763 6298 5.385509 GGCTAATTTTGTAGGCTGAAACA 57.614 39.130 0.00 0.00 42.05 2.83
5770 6305 7.817478 ACATTTTTGTAGGCTAATTTTGTAGGC 59.183 33.333 0.00 0.00 44.83 3.93
5771 6306 9.353999 GACATTTTTGTAGGCTAATTTTGTAGG 57.646 33.333 0.00 0.00 0.00 3.18
5852 6388 6.267471 TGCTGTTTCTTAGGTCCAAATCAATT 59.733 34.615 0.00 0.00 0.00 2.32
5855 6391 4.724399 TGCTGTTTCTTAGGTCCAAATCA 58.276 39.130 0.00 0.00 0.00 2.57
5876 6412 1.737838 TGCTAATCCAAAGTCGCCTG 58.262 50.000 0.00 0.00 0.00 4.85
5877 6413 2.489938 TTGCTAATCCAAAGTCGCCT 57.510 45.000 0.00 0.00 0.00 5.52
5915 6451 9.431887 GTTCTCCACTAGTAAATAACACATGAA 57.568 33.333 0.00 0.00 0.00 2.57
5916 6452 8.590204 TGTTCTCCACTAGTAAATAACACATGA 58.410 33.333 0.00 0.00 0.00 3.07
5917 6453 8.771920 TGTTCTCCACTAGTAAATAACACATG 57.228 34.615 0.00 0.00 0.00 3.21
5918 6454 8.812972 TCTGTTCTCCACTAGTAAATAACACAT 58.187 33.333 0.00 0.00 0.00 3.21
5919 6455 8.185506 TCTGTTCTCCACTAGTAAATAACACA 57.814 34.615 0.00 0.00 0.00 3.72
5920 6456 8.923683 GTTCTGTTCTCCACTAGTAAATAACAC 58.076 37.037 0.00 0.00 0.00 3.32
5921 6457 7.811236 CGTTCTGTTCTCCACTAGTAAATAACA 59.189 37.037 0.00 4.17 0.00 2.41
5922 6458 7.275123 CCGTTCTGTTCTCCACTAGTAAATAAC 59.725 40.741 0.00 0.00 0.00 1.89
5923 6459 7.039504 ACCGTTCTGTTCTCCACTAGTAAATAA 60.040 37.037 0.00 0.00 0.00 1.40
5924 6460 6.435277 ACCGTTCTGTTCTCCACTAGTAAATA 59.565 38.462 0.00 0.00 0.00 1.40
5925 6461 5.245526 ACCGTTCTGTTCTCCACTAGTAAAT 59.754 40.000 0.00 0.00 0.00 1.40
5926 6462 4.586001 ACCGTTCTGTTCTCCACTAGTAAA 59.414 41.667 0.00 0.00 0.00 2.01
5927 6463 4.147321 ACCGTTCTGTTCTCCACTAGTAA 58.853 43.478 0.00 0.00 0.00 2.24
5928 6464 3.759581 ACCGTTCTGTTCTCCACTAGTA 58.240 45.455 0.00 0.00 0.00 1.82
5929 6465 2.595238 ACCGTTCTGTTCTCCACTAGT 58.405 47.619 0.00 0.00 0.00 2.57
5930 6466 3.662247 AACCGTTCTGTTCTCCACTAG 57.338 47.619 0.00 0.00 0.00 2.57
5931 6467 4.560108 GCTAAACCGTTCTGTTCTCCACTA 60.560 45.833 0.00 0.00 0.00 2.74
5932 6468 3.802675 GCTAAACCGTTCTGTTCTCCACT 60.803 47.826 0.00 0.00 0.00 4.00
5933 6469 2.479275 GCTAAACCGTTCTGTTCTCCAC 59.521 50.000 0.00 0.00 0.00 4.02
5934 6470 2.103432 TGCTAAACCGTTCTGTTCTCCA 59.897 45.455 0.00 0.00 0.00 3.86
5935 6471 2.762745 TGCTAAACCGTTCTGTTCTCC 58.237 47.619 0.00 0.00 0.00 3.71
5936 6472 4.056050 TCTTGCTAAACCGTTCTGTTCTC 58.944 43.478 0.00 0.00 0.00 2.87
5937 6473 4.058817 CTCTTGCTAAACCGTTCTGTTCT 58.941 43.478 0.00 0.00 0.00 3.01
5938 6474 4.056050 TCTCTTGCTAAACCGTTCTGTTC 58.944 43.478 0.00 0.00 0.00 3.18
5943 6479 4.617223 GCAAATTCTCTTGCTAAACCGTTC 59.383 41.667 1.15 0.00 46.66 3.95
6004 6540 3.187227 GTGACGTTGCTGATTGAATCACT 59.813 43.478 3.29 0.00 35.06 3.41
6006 6542 2.483877 GGTGACGTTGCTGATTGAATCA 59.516 45.455 7.73 7.73 37.76 2.57
6095 6635 6.714356 TGTCATGTTCAAAATGTCTACATCCA 59.286 34.615 0.00 0.00 35.10 3.41
6104 6644 5.873712 TGTTTGCTTGTCATGTTCAAAATGT 59.126 32.000 0.00 0.00 0.00 2.71
6128 6668 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
6133 6673 7.125204 TGTTATTATATTATGGGACGGAGGGAG 59.875 40.741 0.00 0.00 0.00 4.30
6134 6674 6.961131 TGTTATTATATTATGGGACGGAGGGA 59.039 38.462 0.00 0.00 0.00 4.20
6135 6675 7.190335 TGTTATTATATTATGGGACGGAGGG 57.810 40.000 0.00 0.00 0.00 4.30
6136 6676 9.681062 AAATGTTATTATATTATGGGACGGAGG 57.319 33.333 0.00 0.00 0.00 4.30
6151 6691 9.926158 TTGCTTGTCATGTTCAAATGTTATTAT 57.074 25.926 0.00 0.00 0.00 1.28
6152 6692 9.755804 TTTGCTTGTCATGTTCAAATGTTATTA 57.244 25.926 0.00 0.00 0.00 0.98
6153 6693 8.550376 GTTTGCTTGTCATGTTCAAATGTTATT 58.450 29.630 0.00 0.00 0.00 1.40
6154 6694 7.710044 TGTTTGCTTGTCATGTTCAAATGTTAT 59.290 29.630 0.00 0.00 0.00 1.89
6155 6695 7.038048 TGTTTGCTTGTCATGTTCAAATGTTA 58.962 30.769 0.00 0.00 0.00 2.41
6156 6696 5.873712 TGTTTGCTTGTCATGTTCAAATGTT 59.126 32.000 0.00 0.00 0.00 2.71
6157 6697 5.417811 TGTTTGCTTGTCATGTTCAAATGT 58.582 33.333 0.00 0.00 0.00 2.71
6158 6698 5.970140 TGTTTGCTTGTCATGTTCAAATG 57.030 34.783 0.00 0.00 0.00 2.32
6159 6699 6.108015 AGTTGTTTGCTTGTCATGTTCAAAT 58.892 32.000 0.00 0.00 0.00 2.32
6160 6700 5.477510 AGTTGTTTGCTTGTCATGTTCAAA 58.522 33.333 0.00 0.00 0.00 2.69
6161 6701 5.070770 AGTTGTTTGCTTGTCATGTTCAA 57.929 34.783 0.00 0.00 0.00 2.69
6162 6702 4.717233 AGTTGTTTGCTTGTCATGTTCA 57.283 36.364 0.00 0.00 0.00 3.18
6163 6703 5.821204 AGTAGTTGTTTGCTTGTCATGTTC 58.179 37.500 0.00 0.00 0.00 3.18
6164 6704 5.221048 GGAGTAGTTGTTTGCTTGTCATGTT 60.221 40.000 0.00 0.00 0.00 2.71
6165 6705 4.275936 GGAGTAGTTGTTTGCTTGTCATGT 59.724 41.667 0.00 0.00 0.00 3.21
6166 6706 4.320494 GGGAGTAGTTGTTTGCTTGTCATG 60.320 45.833 0.00 0.00 0.00 3.07
6167 6707 3.821033 GGGAGTAGTTGTTTGCTTGTCAT 59.179 43.478 0.00 0.00 0.00 3.06
6168 6708 3.118038 AGGGAGTAGTTGTTTGCTTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
6169 6709 3.477530 AGGGAGTAGTTGTTTGCTTGTC 58.522 45.455 0.00 0.00 0.00 3.18
6170 6710 3.477530 GAGGGAGTAGTTGTTTGCTTGT 58.522 45.455 0.00 0.00 0.00 3.16
6171 6711 2.814336 GGAGGGAGTAGTTGTTTGCTTG 59.186 50.000 0.00 0.00 0.00 4.01
6172 6712 2.550208 CGGAGGGAGTAGTTGTTTGCTT 60.550 50.000 0.00 0.00 0.00 3.91
6173 6713 1.002087 CGGAGGGAGTAGTTGTTTGCT 59.998 52.381 0.00 0.00 0.00 3.91
6174 6714 1.270678 ACGGAGGGAGTAGTTGTTTGC 60.271 52.381 0.00 0.00 0.00 3.68
6175 6715 2.612221 GGACGGAGGGAGTAGTTGTTTG 60.612 54.545 0.00 0.00 0.00 2.93
6176 6716 1.622312 GGACGGAGGGAGTAGTTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
6177 6717 1.264295 GGACGGAGGGAGTAGTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
6178 6718 0.614134 GGGACGGAGGGAGTAGTTGT 60.614 60.000 0.00 0.00 0.00 3.32
6179 6719 0.613853 TGGGACGGAGGGAGTAGTTG 60.614 60.000 0.00 0.00 0.00 3.16
6180 6720 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
6181 6721 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
6182 6722 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
6183 6723 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
6184 6724 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
6185 6725 7.125204 TGTTATTATATTATGGGACGGAGGGAG 59.875 40.741 0.00 0.00 0.00 4.30
6186 6726 6.961131 TGTTATTATATTATGGGACGGAGGGA 59.039 38.462 0.00 0.00 0.00 4.20
6187 6727 7.190335 TGTTATTATATTATGGGACGGAGGG 57.810 40.000 0.00 0.00 0.00 4.30
6188 6728 9.681062 AAATGTTATTATATTATGGGACGGAGG 57.319 33.333 0.00 0.00 0.00 4.30
6201 6741 9.959749 CTGGCGGTGTTAAAAATGTTATTATAT 57.040 29.630 0.00 0.00 0.00 0.86
6202 6742 9.175312 TCTGGCGGTGTTAAAAATGTTATTATA 57.825 29.630 0.00 0.00 0.00 0.98
6203 6743 8.057536 TCTGGCGGTGTTAAAAATGTTATTAT 57.942 30.769 0.00 0.00 0.00 1.28
6204 6744 7.175293 ACTCTGGCGGTGTTAAAAATGTTATTA 59.825 33.333 0.00 0.00 0.00 0.98
6205 6745 6.015772 ACTCTGGCGGTGTTAAAAATGTTATT 60.016 34.615 0.00 0.00 0.00 1.40
6206 6746 5.475564 ACTCTGGCGGTGTTAAAAATGTTAT 59.524 36.000 0.00 0.00 0.00 1.89
6207 6747 4.822896 ACTCTGGCGGTGTTAAAAATGTTA 59.177 37.500 0.00 0.00 0.00 2.41
6208 6748 3.634910 ACTCTGGCGGTGTTAAAAATGTT 59.365 39.130 0.00 0.00 0.00 2.71
6209 6749 3.219281 ACTCTGGCGGTGTTAAAAATGT 58.781 40.909 0.00 0.00 0.00 2.71
6210 6750 3.915437 ACTCTGGCGGTGTTAAAAATG 57.085 42.857 0.00 0.00 0.00 2.32
6211 6751 3.754850 GGTACTCTGGCGGTGTTAAAAAT 59.245 43.478 6.32 0.00 0.00 1.82
6212 6752 3.140623 GGTACTCTGGCGGTGTTAAAAA 58.859 45.455 6.32 0.00 0.00 1.94
6213 6753 2.550639 GGGTACTCTGGCGGTGTTAAAA 60.551 50.000 6.32 0.00 0.00 1.52
6214 6754 1.002315 GGGTACTCTGGCGGTGTTAAA 59.998 52.381 6.32 0.00 0.00 1.52
6215 6755 0.609662 GGGTACTCTGGCGGTGTTAA 59.390 55.000 6.32 0.00 0.00 2.01
6216 6756 0.251922 AGGGTACTCTGGCGGTGTTA 60.252 55.000 6.32 0.00 0.00 2.41
6217 6757 1.125711 AAGGGTACTCTGGCGGTGTT 61.126 55.000 6.32 0.00 0.00 3.32
6218 6758 1.535687 AAGGGTACTCTGGCGGTGT 60.536 57.895 0.00 6.27 0.00 4.16
6219 6759 1.079127 CAAGGGTACTCTGGCGGTG 60.079 63.158 0.00 0.00 0.00 4.94
6220 6760 2.955881 GCAAGGGTACTCTGGCGGT 61.956 63.158 6.31 0.00 0.00 5.68
6221 6761 2.125106 GCAAGGGTACTCTGGCGG 60.125 66.667 6.31 0.00 0.00 6.13
6222 6762 1.448540 CAGCAAGGGTACTCTGGCG 60.449 63.158 16.65 7.93 0.00 5.69
6263 6803 2.533266 TGGTAAGCATGCTAGCTAGC 57.467 50.000 34.20 34.20 45.89 3.42
6272 6812 7.594714 ACGTCTCTACTAATATGGTAAGCATG 58.405 38.462 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.