Multiple sequence alignment - TraesCS3A01G128100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G128100 chr3A 100.000 2796 0 0 1 2796 105028546 105025751 0.000000e+00 5164.0
1 TraesCS3A01G128100 chr3A 74.389 1187 123 91 830 1923 105944263 105945361 9.590000e-90 340.0
2 TraesCS3A01G128100 chr3A 78.223 349 43 17 1606 1923 105713409 105713755 2.840000e-45 193.0
3 TraesCS3A01G128100 chr3A 94.444 36 2 0 489 524 689135589 689135554 3.890000e-04 56.5
4 TraesCS3A01G128100 chr3D 92.835 1968 118 17 828 2791 88432105 88434053 0.000000e+00 2832.0
5 TraesCS3A01G128100 chr3D 74.389 1187 120 91 828 1923 89212290 89213383 3.450000e-89 339.0
6 TraesCS3A01G128100 chr3D 98.675 151 1 1 678 828 514993531 514993382 1.650000e-67 267.0
7 TraesCS3A01G128100 chr3D 95.266 169 2 2 517 679 88431947 88432115 2.140000e-66 263.0
8 TraesCS3A01G128100 chr3D 78.455 492 43 36 828 1261 89049727 89050213 2.140000e-66 263.0
9 TraesCS3A01G128100 chr3D 89.062 192 13 6 1 192 88431771 88431954 6.020000e-57 231.0
10 TraesCS3A01G128100 chr3D 75.439 627 70 54 828 1392 89210635 89211239 7.790000e-56 228.0
11 TraesCS3A01G128100 chr3D 87.755 147 17 1 681 826 519256175 519256029 1.330000e-38 171.0
12 TraesCS3A01G128100 chr3D 78.767 292 31 17 1657 1923 89050508 89050793 1.720000e-37 167.0
13 TraesCS3A01G128100 chr3B 91.134 1579 81 25 828 2381 137850669 137852213 0.000000e+00 2085.0
14 TraesCS3A01G128100 chr3B 90.887 417 31 5 2380 2794 137852252 137852663 1.130000e-153 553.0
15 TraesCS3A01G128100 chr3B 95.806 310 10 3 193 500 571823006 571823314 5.380000e-137 497.0
16 TraesCS3A01G128100 chr3B 73.852 1220 136 88 828 1948 138372696 138373831 1.620000e-82 316.0
17 TraesCS3A01G128100 chr3B 75.586 811 76 58 828 1571 138498583 138499338 3.520000e-74 289.0
18 TraesCS3A01G128100 chr3B 98.693 153 2 0 678 830 81304456 81304608 3.550000e-69 272.0
19 TraesCS3A01G128100 chr3B 95.652 161 7 0 519 679 137850519 137850679 2.760000e-65 259.0
20 TraesCS3A01G128100 chr3B 75.278 360 45 23 1606 1923 138499337 138499694 6.280000e-27 132.0
21 TraesCS3A01G128100 chr6A 97.879 330 5 2 189 516 491040289 491039960 1.120000e-158 569.0
22 TraesCS3A01G128100 chr6A 96.764 309 8 2 194 500 571688708 571689016 5.340000e-142 514.0
23 TraesCS3A01G128100 chr4A 97.785 316 5 2 187 500 39606198 39605883 6.810000e-151 544.0
24 TraesCS3A01G128100 chr7B 98.077 312 4 2 191 500 191287210 191286899 2.450000e-150 542.0
25 TraesCS3A01G128100 chr2A 97.749 311 5 2 190 498 608592781 608593091 4.100000e-148 534.0
26 TraesCS3A01G128100 chr2A 100.000 150 0 0 678 827 35418558 35418409 7.630000e-71 278.0
27 TraesCS3A01G128100 chr2A 98.684 152 1 1 678 829 223713768 223713918 4.590000e-68 268.0
28 TraesCS3A01G128100 chr2A 100.000 28 0 0 489 516 608593099 608593126 5.000000e-03 52.8
29 TraesCS3A01G128100 chr4B 97.735 309 6 1 193 500 531561623 531561315 5.300000e-147 531.0
30 TraesCS3A01G128100 chr4B 94.551 312 15 2 191 500 589107147 589106836 5.420000e-132 481.0
31 TraesCS3A01G128100 chr7A 97.428 311 6 2 192 500 526287495 526287185 1.910000e-146 529.0
32 TraesCS3A01G128100 chr7A 100.000 28 0 0 489 516 526287179 526287152 5.000000e-03 52.8
33 TraesCS3A01G128100 chr4D 87.561 410 45 5 2380 2787 202362712 202363117 1.170000e-128 470.0
34 TraesCS3A01G128100 chr4D 87.081 418 48 5 2380 2794 208370067 208370481 4.220000e-128 468.0
35 TraesCS3A01G128100 chr1B 86.538 416 51 4 2380 2793 286301203 286301615 1.180000e-123 453.0
36 TraesCS3A01G128100 chr5B 86.520 408 50 4 2384 2788 692245842 692245437 7.110000e-121 444.0
37 TraesCS3A01G128100 chr5D 86.207 406 54 1 2384 2787 193142737 193142332 3.310000e-119 438.0
38 TraesCS3A01G128100 chr6B 85.511 421 56 4 2376 2794 8652223 8651806 4.280000e-118 435.0
39 TraesCS3A01G128100 chr6B 98.864 88 1 0 678 765 667219942 667220029 1.040000e-34 158.0
40 TraesCS3A01G128100 chrUn 85.273 421 57 4 2376 2794 200650413 200650830 1.990000e-116 429.0
41 TraesCS3A01G128100 chr1A 100.000 150 0 0 678 827 303796453 303796602 7.630000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G128100 chr3A 105025751 105028546 2795 True 5164.000000 5164 100.000000 1 2796 1 chr3A.!!$R1 2795
1 TraesCS3A01G128100 chr3A 105944263 105945361 1098 False 340.000000 340 74.389000 830 1923 1 chr3A.!!$F2 1093
2 TraesCS3A01G128100 chr3D 88431771 88434053 2282 False 1108.666667 2832 92.387667 1 2791 3 chr3D.!!$F1 2790
3 TraesCS3A01G128100 chr3D 89210635 89213383 2748 False 283.500000 339 74.914000 828 1923 2 chr3D.!!$F3 1095
4 TraesCS3A01G128100 chr3D 89049727 89050793 1066 False 215.000000 263 78.611000 828 1923 2 chr3D.!!$F2 1095
5 TraesCS3A01G128100 chr3B 137850519 137852663 2144 False 965.666667 2085 92.557667 519 2794 3 chr3B.!!$F4 2275
6 TraesCS3A01G128100 chr3B 138372696 138373831 1135 False 316.000000 316 73.852000 828 1948 1 chr3B.!!$F2 1120
7 TraesCS3A01G128100 chr3B 138498583 138499694 1111 False 210.500000 289 75.432000 828 1923 2 chr3B.!!$F5 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.031994 CCCGTTGGGCTTTTTGACTG 59.968 55.0 0.00 0.0 35.35 3.51 F
784 791 0.100146 GCCGTCGGATTCTTAGTCGT 59.900 55.0 17.49 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 3247 0.451783 AATCGAGGGCATTGTTTCGC 59.548 50.0 0.0 0.0 33.36 4.70 R
2052 3871 0.539051 AGCTGCCATAGTCAGACCAC 59.461 55.0 0.0 0.0 33.54 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.797912 AAGGGAGAGAGAAAAACCAAGT 57.202 40.909 0.00 0.00 0.00 3.16
22 23 4.797912 AGGGAGAGAGAAAAACCAAGTT 57.202 40.909 0.00 0.00 0.00 2.66
23 24 4.464947 AGGGAGAGAGAAAAACCAAGTTG 58.535 43.478 0.00 0.00 0.00 3.16
24 25 4.166144 AGGGAGAGAGAAAAACCAAGTTGA 59.834 41.667 3.87 0.00 0.00 3.18
25 26 5.073428 GGGAGAGAGAAAAACCAAGTTGAT 58.927 41.667 3.87 0.00 0.00 2.57
26 27 5.048434 GGGAGAGAGAAAAACCAAGTTGATG 60.048 44.000 3.87 0.00 0.00 3.07
47 48 7.331026 TGATGAGAGGTGAGACGAAATAAAAT 58.669 34.615 0.00 0.00 0.00 1.82
49 50 6.697395 TGAGAGGTGAGACGAAATAAAATCA 58.303 36.000 0.00 0.00 0.00 2.57
53 54 6.464222 AGGTGAGACGAAATAAAATCAGACA 58.536 36.000 0.00 0.00 0.00 3.41
84 85 3.614092 CGTACCAGACTACCAACTCCTA 58.386 50.000 0.00 0.00 0.00 2.94
85 86 3.376546 CGTACCAGACTACCAACTCCTAC 59.623 52.174 0.00 0.00 0.00 3.18
195 196 8.927675 ATGTAAAATAAAACACCACCACTAGA 57.072 30.769 0.00 0.00 0.00 2.43
196 197 8.156994 TGTAAAATAAAACACCACCACTAGAC 57.843 34.615 0.00 0.00 0.00 2.59
197 198 6.644248 AAAATAAAACACCACCACTAGACC 57.356 37.500 0.00 0.00 0.00 3.85
198 199 5.578157 AATAAAACACCACCACTAGACCT 57.422 39.130 0.00 0.00 0.00 3.85
199 200 2.930826 AAACACCACCACTAGACCTG 57.069 50.000 0.00 0.00 0.00 4.00
200 201 1.056660 AACACCACCACTAGACCTGG 58.943 55.000 0.00 0.00 34.62 4.45
201 202 1.296715 CACCACCACTAGACCTGGC 59.703 63.158 0.00 0.00 31.13 4.85
202 203 1.918800 ACCACCACTAGACCTGGCC 60.919 63.158 0.00 0.00 31.13 5.36
203 204 1.918293 CCACCACTAGACCTGGCCA 60.918 63.158 4.71 4.71 31.13 5.36
204 205 1.274703 CCACCACTAGACCTGGCCAT 61.275 60.000 5.51 0.00 31.13 4.40
205 206 0.107508 CACCACTAGACCTGGCCATG 60.108 60.000 5.51 6.06 31.13 3.66
206 207 1.274703 ACCACTAGACCTGGCCATGG 61.275 60.000 16.18 16.18 31.13 3.66
207 208 0.982852 CCACTAGACCTGGCCATGGA 60.983 60.000 23.24 0.00 0.00 3.41
208 209 0.911769 CACTAGACCTGGCCATGGAA 59.088 55.000 23.24 0.87 0.00 3.53
209 210 1.281867 CACTAGACCTGGCCATGGAAA 59.718 52.381 23.24 0.44 0.00 3.13
210 211 1.282157 ACTAGACCTGGCCATGGAAAC 59.718 52.381 23.24 5.15 0.00 2.78
211 212 0.623723 TAGACCTGGCCATGGAAACC 59.376 55.000 23.24 8.07 0.00 3.27
212 213 1.682344 GACCTGGCCATGGAAACCC 60.682 63.158 23.24 7.65 0.00 4.11
213 214 2.755469 CCTGGCCATGGAAACCCG 60.755 66.667 18.40 3.46 0.00 5.28
214 215 2.755469 CTGGCCATGGAAACCCGG 60.755 66.667 18.40 8.36 0.00 5.73
215 216 3.583882 CTGGCCATGGAAACCCGGT 62.584 63.158 18.40 0.00 0.00 5.28
216 217 2.754254 GGCCATGGAAACCCGGTC 60.754 66.667 18.40 0.00 0.00 4.79
217 218 2.754254 GCCATGGAAACCCGGTCC 60.754 66.667 18.40 0.71 35.55 4.46
218 219 2.437716 CCATGGAAACCCGGTCCG 60.438 66.667 5.56 3.60 38.06 4.79
243 244 4.230002 CGCCCGGCCCGATCTAAA 62.230 66.667 3.71 0.00 0.00 1.85
244 245 2.191109 GCCCGGCCCGATCTAAAA 59.809 61.111 3.71 0.00 0.00 1.52
245 246 1.452470 GCCCGGCCCGATCTAAAAA 60.452 57.895 3.71 0.00 0.00 1.94
280 281 4.820744 CCCGACCTTGCCCATGGG 62.821 72.222 27.87 27.87 38.57 4.00
304 305 2.967599 GCTTGGGCCTGATTTTTAGG 57.032 50.000 4.53 0.00 38.39 2.69
312 313 1.956477 CCTGATTTTTAGGCCCGATGG 59.044 52.381 0.00 0.00 0.00 3.51
344 345 2.113986 GCTCGGGCCTGCCATATT 59.886 61.111 6.73 0.00 37.98 1.28
345 346 1.529244 GCTCGGGCCTGCCATATTT 60.529 57.895 6.73 0.00 37.98 1.40
346 347 1.799258 GCTCGGGCCTGCCATATTTG 61.799 60.000 6.73 0.00 37.98 2.32
347 348 1.799258 CTCGGGCCTGCCATATTTGC 61.799 60.000 6.73 0.00 37.98 3.68
348 349 2.859981 CGGGCCTGCCATATTTGCC 61.860 63.158 10.86 0.00 41.42 4.52
349 350 1.761667 GGGCCTGCCATATTTGCCA 60.762 57.895 10.86 0.00 43.96 4.92
350 351 1.123246 GGGCCTGCCATATTTGCCAT 61.123 55.000 10.86 0.00 43.96 4.40
351 352 0.760572 GGCCTGCCATATTTGCCATT 59.239 50.000 2.58 0.00 41.76 3.16
352 353 1.141455 GGCCTGCCATATTTGCCATTT 59.859 47.619 2.58 0.00 41.76 2.32
353 354 2.368221 GGCCTGCCATATTTGCCATTTA 59.632 45.455 2.58 0.00 41.76 1.40
354 355 3.181456 GGCCTGCCATATTTGCCATTTAA 60.181 43.478 2.58 0.00 41.76 1.52
355 356 3.809279 GCCTGCCATATTTGCCATTTAAC 59.191 43.478 0.00 0.00 0.00 2.01
356 357 4.050553 CCTGCCATATTTGCCATTTAACG 58.949 43.478 0.00 0.00 0.00 3.18
357 358 4.202101 CCTGCCATATTTGCCATTTAACGA 60.202 41.667 0.00 0.00 0.00 3.85
358 359 5.330455 TGCCATATTTGCCATTTAACGAA 57.670 34.783 0.00 0.00 0.00 3.85
359 360 5.347342 TGCCATATTTGCCATTTAACGAAG 58.653 37.500 0.00 0.00 0.00 3.79
360 361 5.126222 TGCCATATTTGCCATTTAACGAAGA 59.874 36.000 0.00 0.00 0.00 2.87
361 362 5.687285 GCCATATTTGCCATTTAACGAAGAG 59.313 40.000 0.00 0.00 0.00 2.85
362 363 6.208644 CCATATTTGCCATTTAACGAAGAGG 58.791 40.000 0.00 0.00 0.00 3.69
363 364 3.569250 TTTGCCATTTAACGAAGAGGC 57.431 42.857 0.00 0.00 40.75 4.70
364 365 1.459450 TGCCATTTAACGAAGAGGCC 58.541 50.000 0.00 0.00 40.05 5.19
365 366 0.738975 GCCATTTAACGAAGAGGCCC 59.261 55.000 0.00 0.00 36.75 5.80
366 367 1.014352 CCATTTAACGAAGAGGCCCG 58.986 55.000 0.00 0.00 0.00 6.13
367 368 1.014352 CATTTAACGAAGAGGCCCGG 58.986 55.000 0.00 0.00 0.00 5.73
368 369 0.746923 ATTTAACGAAGAGGCCCGGC 60.747 55.000 0.00 0.00 0.00 6.13
400 401 2.425562 CCCGTTGGGCTTTTTGACT 58.574 52.632 0.00 0.00 35.35 3.41
401 402 0.031994 CCCGTTGGGCTTTTTGACTG 59.968 55.000 0.00 0.00 35.35 3.51
402 403 1.028905 CCGTTGGGCTTTTTGACTGA 58.971 50.000 0.00 0.00 0.00 3.41
403 404 1.613437 CCGTTGGGCTTTTTGACTGAT 59.387 47.619 0.00 0.00 0.00 2.90
404 405 2.607771 CCGTTGGGCTTTTTGACTGATG 60.608 50.000 0.00 0.00 0.00 3.07
405 406 2.607771 CGTTGGGCTTTTTGACTGATGG 60.608 50.000 0.00 0.00 0.00 3.51
406 407 1.631405 TGGGCTTTTTGACTGATGGG 58.369 50.000 0.00 0.00 0.00 4.00
407 408 0.247460 GGGCTTTTTGACTGATGGGC 59.753 55.000 0.00 0.00 0.00 5.36
408 409 0.247460 GGCTTTTTGACTGATGGGCC 59.753 55.000 0.00 0.00 0.00 5.80
409 410 0.109132 GCTTTTTGACTGATGGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
410 411 0.527565 CTTTTTGACTGATGGGCCGG 59.472 55.000 0.00 0.00 0.00 6.13
411 412 0.897863 TTTTTGACTGATGGGCCGGG 60.898 55.000 2.18 0.00 0.00 5.73
412 413 3.936772 TTTGACTGATGGGCCGGGC 62.937 63.158 22.00 22.00 0.00 6.13
414 415 4.554036 GACTGATGGGCCGGGCTC 62.554 72.222 28.80 16.93 0.00 4.70
429 430 3.297391 GCTCGGGCCTGAAATCTAG 57.703 57.895 16.91 3.61 0.00 2.43
430 431 0.250081 GCTCGGGCCTGAAATCTAGG 60.250 60.000 16.91 2.81 38.39 3.02
436 437 3.688553 CCTGAAATCTAGGCCCGAC 57.311 57.895 0.00 0.00 0.00 4.79
437 438 0.249489 CCTGAAATCTAGGCCCGACG 60.249 60.000 0.00 0.00 0.00 5.12
438 439 0.249489 CTGAAATCTAGGCCCGACGG 60.249 60.000 6.99 6.99 0.00 4.79
470 471 2.600470 GCTCGGGCCCAGGTTTTT 60.600 61.111 24.92 0.00 0.00 1.94
485 486 3.842869 TTTTTGCAACGGGCTTTGT 57.157 42.105 0.00 0.00 45.15 2.83
486 487 2.100605 TTTTTGCAACGGGCTTTGTT 57.899 40.000 0.00 0.00 45.15 2.83
487 488 2.100605 TTTTGCAACGGGCTTTGTTT 57.899 40.000 0.00 0.00 45.15 2.83
488 489 1.363744 TTTGCAACGGGCTTTGTTTG 58.636 45.000 0.00 0.00 45.15 2.93
489 490 0.460987 TTGCAACGGGCTTTGTTTGG 60.461 50.000 0.00 0.00 45.15 3.28
490 491 2.243957 GCAACGGGCTTTGTTTGGC 61.244 57.895 0.00 0.00 40.25 4.52
491 492 1.594021 CAACGGGCTTTGTTTGGCC 60.594 57.895 0.00 0.00 46.89 5.36
495 496 4.680237 GGCTTTGTTTGGCCCGGC 62.680 66.667 0.00 0.00 42.30 6.13
511 512 3.451894 GCCCGACATTTGGCCAGG 61.452 66.667 5.11 2.45 41.97 4.45
512 513 2.035626 CCCGACATTTGGCCAGGT 59.964 61.111 5.11 5.94 0.00 4.00
513 514 1.301623 CCCGACATTTGGCCAGGTA 59.698 57.895 5.11 0.00 0.00 3.08
514 515 0.106719 CCCGACATTTGGCCAGGTAT 60.107 55.000 5.11 0.00 0.00 2.73
515 516 1.142060 CCCGACATTTGGCCAGGTATA 59.858 52.381 5.11 0.00 0.00 1.47
516 517 2.422235 CCCGACATTTGGCCAGGTATAA 60.422 50.000 5.11 0.00 0.00 0.98
517 518 2.616842 CCGACATTTGGCCAGGTATAAC 59.383 50.000 5.11 0.00 0.00 1.89
598 604 3.606662 CGCCCGATCCTCCGATGT 61.607 66.667 0.00 0.00 0.00 3.06
668 675 2.690778 GCCAGCAAACCGAAGCGAT 61.691 57.895 0.00 0.00 35.48 4.58
669 676 1.875963 CCAGCAAACCGAAGCGATT 59.124 52.632 0.00 0.00 35.48 3.34
670 677 0.179189 CCAGCAAACCGAAGCGATTC 60.179 55.000 2.61 2.61 35.48 2.52
671 678 0.179189 CAGCAAACCGAAGCGATTCC 60.179 55.000 8.00 0.00 35.48 3.01
672 679 0.605319 AGCAAACCGAAGCGATTCCA 60.605 50.000 8.00 0.00 35.48 3.53
673 680 0.239879 GCAAACCGAAGCGATTCCAA 59.760 50.000 8.00 0.00 0.00 3.53
674 681 1.963747 CAAACCGAAGCGATTCCAAC 58.036 50.000 8.00 0.00 0.00 3.77
675 682 0.879090 AAACCGAAGCGATTCCAACC 59.121 50.000 8.00 0.00 0.00 3.77
676 683 0.958876 AACCGAAGCGATTCCAACCC 60.959 55.000 8.00 0.00 0.00 4.11
677 684 2.461110 CCGAAGCGATTCCAACCCG 61.461 63.158 8.00 0.00 0.00 5.28
678 685 1.447140 CGAAGCGATTCCAACCCGA 60.447 57.895 8.00 0.00 0.00 5.14
679 686 1.421410 CGAAGCGATTCCAACCCGAG 61.421 60.000 8.00 0.00 0.00 4.63
680 687 1.706287 GAAGCGATTCCAACCCGAGC 61.706 60.000 0.88 0.00 0.00 5.03
681 688 2.435938 GCGATTCCAACCCGAGCA 60.436 61.111 0.00 0.00 0.00 4.26
682 689 2.464459 GCGATTCCAACCCGAGCAG 61.464 63.158 0.00 0.00 0.00 4.24
683 690 1.079127 CGATTCCAACCCGAGCAGT 60.079 57.895 0.00 0.00 0.00 4.40
684 691 1.361668 CGATTCCAACCCGAGCAGTG 61.362 60.000 0.00 0.00 0.00 3.66
685 692 1.648467 GATTCCAACCCGAGCAGTGC 61.648 60.000 7.13 7.13 0.00 4.40
686 693 2.129555 ATTCCAACCCGAGCAGTGCT 62.130 55.000 19.86 19.86 43.88 4.40
687 694 1.476845 TTCCAACCCGAGCAGTGCTA 61.477 55.000 19.77 0.00 39.88 3.49
688 695 1.221840 CCAACCCGAGCAGTGCTAT 59.778 57.895 19.77 0.00 39.88 2.97
689 696 0.464036 CCAACCCGAGCAGTGCTATA 59.536 55.000 19.77 0.00 39.88 1.31
690 697 1.571919 CAACCCGAGCAGTGCTATAC 58.428 55.000 19.77 4.76 39.88 1.47
691 698 1.134818 CAACCCGAGCAGTGCTATACA 60.135 52.381 19.77 0.00 39.88 2.29
692 699 0.747255 ACCCGAGCAGTGCTATACAG 59.253 55.000 19.77 8.03 39.88 2.74
693 700 1.032794 CCCGAGCAGTGCTATACAGA 58.967 55.000 19.77 0.00 39.88 3.41
694 701 1.269309 CCCGAGCAGTGCTATACAGAC 60.269 57.143 19.77 2.29 39.88 3.51
695 702 1.598183 CCGAGCAGTGCTATACAGACG 60.598 57.143 19.77 15.04 39.88 4.18
696 703 1.330829 CGAGCAGTGCTATACAGACGA 59.669 52.381 19.77 0.00 39.88 4.20
697 704 2.722071 GAGCAGTGCTATACAGACGAC 58.278 52.381 19.77 0.00 39.88 4.34
698 705 2.092323 AGCAGTGCTATACAGACGACA 58.908 47.619 18.11 0.00 36.99 4.35
699 706 2.492088 AGCAGTGCTATACAGACGACAA 59.508 45.455 18.11 0.00 36.99 3.18
700 707 3.056821 AGCAGTGCTATACAGACGACAAA 60.057 43.478 18.11 0.00 36.99 2.83
701 708 3.678072 GCAGTGCTATACAGACGACAAAA 59.322 43.478 8.18 0.00 0.00 2.44
702 709 4.434330 GCAGTGCTATACAGACGACAAAAC 60.434 45.833 8.18 0.00 0.00 2.43
703 710 4.684242 CAGTGCTATACAGACGACAAAACA 59.316 41.667 0.00 0.00 0.00 2.83
704 711 4.684703 AGTGCTATACAGACGACAAAACAC 59.315 41.667 0.00 0.00 0.00 3.32
705 712 3.671459 TGCTATACAGACGACAAAACACG 59.329 43.478 0.00 0.00 0.00 4.49
706 713 3.060363 GCTATACAGACGACAAAACACGG 59.940 47.826 0.00 0.00 0.00 4.94
707 714 2.867287 TACAGACGACAAAACACGGA 57.133 45.000 0.00 0.00 0.00 4.69
708 715 1.283736 ACAGACGACAAAACACGGAC 58.716 50.000 0.00 0.00 0.00 4.79
709 716 0.228742 CAGACGACAAAACACGGACG 59.771 55.000 0.00 0.00 0.00 4.79
710 717 0.101040 AGACGACAAAACACGGACGA 59.899 50.000 0.00 0.00 0.00 4.20
711 718 1.134226 GACGACAAAACACGGACGAT 58.866 50.000 0.00 0.00 0.00 3.73
712 719 1.523934 GACGACAAAACACGGACGATT 59.476 47.619 0.00 0.00 0.00 3.34
713 720 1.523934 ACGACAAAACACGGACGATTC 59.476 47.619 0.00 0.00 0.00 2.52
714 721 1.523515 CGACAAAACACGGACGATTCA 59.476 47.619 0.00 0.00 0.00 2.57
715 722 2.156891 CGACAAAACACGGACGATTCAT 59.843 45.455 0.00 0.00 0.00 2.57
716 723 3.365520 CGACAAAACACGGACGATTCATA 59.634 43.478 0.00 0.00 0.00 2.15
717 724 4.634991 GACAAAACACGGACGATTCATAC 58.365 43.478 0.00 0.00 0.00 2.39
718 725 4.059511 ACAAAACACGGACGATTCATACA 58.940 39.130 0.00 0.00 0.00 2.29
719 726 4.084223 ACAAAACACGGACGATTCATACAC 60.084 41.667 0.00 0.00 0.00 2.90
720 727 1.904144 ACACGGACGATTCATACACG 58.096 50.000 0.00 0.00 0.00 4.49
721 728 1.469703 ACACGGACGATTCATACACGA 59.530 47.619 0.00 0.00 0.00 4.35
722 729 1.844357 CACGGACGATTCATACACGAC 59.156 52.381 0.00 0.00 0.00 4.34
723 730 1.469703 ACGGACGATTCATACACGACA 59.530 47.619 0.00 0.00 0.00 4.35
724 731 2.109463 CGGACGATTCATACACGACAG 58.891 52.381 0.00 0.00 0.00 3.51
725 732 2.477357 CGGACGATTCATACACGACAGT 60.477 50.000 0.00 0.00 0.00 3.55
737 744 1.148310 ACGACAGTGAAATTCAGCCG 58.852 50.000 0.00 0.67 0.00 5.52
738 745 1.148310 CGACAGTGAAATTCAGCCGT 58.852 50.000 0.00 0.00 0.00 5.68
739 746 1.136252 CGACAGTGAAATTCAGCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
740 747 0.593128 ACAGTGAAATTCAGCCGTGC 59.407 50.000 0.00 0.00 0.00 5.34
741 748 0.592637 CAGTGAAATTCAGCCGTGCA 59.407 50.000 0.00 0.00 0.00 4.57
742 749 1.200716 CAGTGAAATTCAGCCGTGCAT 59.799 47.619 0.00 0.00 0.00 3.96
743 750 1.200716 AGTGAAATTCAGCCGTGCATG 59.799 47.619 0.00 0.00 0.00 4.06
744 751 0.109179 TGAAATTCAGCCGTGCATGC 60.109 50.000 11.82 11.82 0.00 4.06
745 752 0.109179 GAAATTCAGCCGTGCATGCA 60.109 50.000 18.46 18.46 0.00 3.96
746 753 0.533491 AAATTCAGCCGTGCATGCAT 59.467 45.000 25.64 4.32 0.00 3.96
747 754 0.179121 AATTCAGCCGTGCATGCATG 60.179 50.000 29.36 29.36 0.00 4.06
748 755 1.317431 ATTCAGCCGTGCATGCATGT 61.317 50.000 32.28 16.73 0.00 3.21
749 756 2.202557 CAGCCGTGCATGCATGTG 60.203 61.111 32.28 24.97 0.00 3.21
750 757 2.674033 AGCCGTGCATGCATGTGT 60.674 55.556 32.28 19.42 0.00 3.72
751 758 1.377072 AGCCGTGCATGCATGTGTA 60.377 52.632 32.28 11.84 0.00 2.90
752 759 0.749091 AGCCGTGCATGCATGTGTAT 60.749 50.000 32.28 15.95 0.00 2.29
753 760 0.943673 GCCGTGCATGCATGTGTATA 59.056 50.000 32.28 2.45 0.00 1.47
754 761 1.069703 GCCGTGCATGCATGTGTATAG 60.070 52.381 32.28 19.67 0.00 1.31
755 762 2.212652 CCGTGCATGCATGTGTATAGT 58.787 47.619 32.28 0.00 0.00 2.12
756 763 2.032636 CCGTGCATGCATGTGTATAGTG 60.033 50.000 32.28 14.87 0.00 2.74
757 764 2.032636 CGTGCATGCATGTGTATAGTGG 60.033 50.000 28.25 0.00 0.00 4.00
758 765 3.205338 GTGCATGCATGTGTATAGTGGA 58.795 45.455 25.64 0.00 0.00 4.02
759 766 3.249320 GTGCATGCATGTGTATAGTGGAG 59.751 47.826 25.64 0.00 0.00 3.86
760 767 2.225019 GCATGCATGTGTATAGTGGAGC 59.775 50.000 26.79 4.83 0.00 4.70
761 768 2.223537 TGCATGTGTATAGTGGAGCG 57.776 50.000 0.00 0.00 0.00 5.03
762 769 1.754226 TGCATGTGTATAGTGGAGCGA 59.246 47.619 0.00 0.00 0.00 4.93
763 770 2.128035 GCATGTGTATAGTGGAGCGAC 58.872 52.381 0.00 0.00 0.00 5.19
764 771 2.481276 GCATGTGTATAGTGGAGCGACA 60.481 50.000 0.00 0.00 0.00 4.35
765 772 3.375642 CATGTGTATAGTGGAGCGACAG 58.624 50.000 0.00 0.00 0.00 3.51
766 773 1.134367 TGTGTATAGTGGAGCGACAGC 59.866 52.381 0.00 0.00 45.58 4.40
767 774 0.744874 TGTATAGTGGAGCGACAGCC 59.255 55.000 0.00 0.00 46.67 4.85
768 775 0.317938 GTATAGTGGAGCGACAGCCG 60.318 60.000 0.00 0.00 46.67 5.52
769 776 0.750546 TATAGTGGAGCGACAGCCGT 60.751 55.000 0.00 0.00 46.67 5.68
770 777 2.005960 ATAGTGGAGCGACAGCCGTC 62.006 60.000 0.00 0.00 46.67 4.79
778 785 4.913126 GACAGCCGTCGGATTCTT 57.087 55.556 17.49 0.00 31.07 2.52
780 787 1.841450 GACAGCCGTCGGATTCTTAG 58.159 55.000 17.49 0.00 31.07 2.18
781 788 1.134560 GACAGCCGTCGGATTCTTAGT 59.865 52.381 17.49 1.54 31.07 2.24
782 789 1.134560 ACAGCCGTCGGATTCTTAGTC 59.865 52.381 17.49 0.00 0.00 2.59
783 790 0.381089 AGCCGTCGGATTCTTAGTCG 59.619 55.000 17.49 0.00 0.00 4.18
784 791 0.100146 GCCGTCGGATTCTTAGTCGT 59.900 55.000 17.49 0.00 0.00 4.34
785 792 1.859197 GCCGTCGGATTCTTAGTCGTC 60.859 57.143 17.49 0.00 0.00 4.20
786 793 1.268437 CCGTCGGATTCTTAGTCGTCC 60.268 57.143 4.91 0.00 0.00 4.79
787 794 1.669779 CGTCGGATTCTTAGTCGTCCT 59.330 52.381 0.00 0.00 0.00 3.85
788 795 2.286301 CGTCGGATTCTTAGTCGTCCTC 60.286 54.545 0.00 0.00 0.00 3.71
789 796 2.681848 GTCGGATTCTTAGTCGTCCTCA 59.318 50.000 0.00 0.00 0.00 3.86
790 797 2.681848 TCGGATTCTTAGTCGTCCTCAC 59.318 50.000 0.00 0.00 0.00 3.51
791 798 2.422479 CGGATTCTTAGTCGTCCTCACA 59.578 50.000 0.00 0.00 0.00 3.58
792 799 3.066900 CGGATTCTTAGTCGTCCTCACAT 59.933 47.826 0.00 0.00 0.00 3.21
793 800 4.612943 GGATTCTTAGTCGTCCTCACATC 58.387 47.826 0.00 0.00 0.00 3.06
794 801 3.759527 TTCTTAGTCGTCCTCACATCG 57.240 47.619 0.00 0.00 0.00 3.84
795 802 2.708051 TCTTAGTCGTCCTCACATCGT 58.292 47.619 0.00 0.00 0.00 3.73
796 803 2.676839 TCTTAGTCGTCCTCACATCGTC 59.323 50.000 0.00 0.00 0.00 4.20
797 804 2.398252 TAGTCGTCCTCACATCGTCT 57.602 50.000 0.00 0.00 0.00 4.18
798 805 2.398252 AGTCGTCCTCACATCGTCTA 57.602 50.000 0.00 0.00 0.00 2.59
799 806 2.008329 AGTCGTCCTCACATCGTCTAC 58.992 52.381 0.00 0.00 0.00 2.59
800 807 1.004595 TCGTCCTCACATCGTCTACG 58.995 55.000 0.00 0.00 41.45 3.51
801 808 0.589229 CGTCCTCACATCGTCTACGC 60.589 60.000 0.00 0.00 39.60 4.42
802 809 0.450583 GTCCTCACATCGTCTACGCA 59.549 55.000 0.00 0.00 39.60 5.24
803 810 1.065701 GTCCTCACATCGTCTACGCAT 59.934 52.381 0.00 0.00 39.60 4.73
804 811 1.749063 TCCTCACATCGTCTACGCATT 59.251 47.619 0.00 0.00 39.60 3.56
805 812 2.165641 TCCTCACATCGTCTACGCATTT 59.834 45.455 0.00 0.00 39.60 2.32
806 813 2.282555 CCTCACATCGTCTACGCATTTG 59.717 50.000 0.00 0.00 39.60 2.32
807 814 2.923655 CTCACATCGTCTACGCATTTGT 59.076 45.455 0.00 0.00 39.60 2.83
808 815 2.921121 TCACATCGTCTACGCATTTGTC 59.079 45.455 0.00 0.00 39.60 3.18
809 816 1.917955 ACATCGTCTACGCATTTGTCG 59.082 47.619 0.00 0.00 39.60 4.35
810 817 1.917955 CATCGTCTACGCATTTGTCGT 59.082 47.619 0.00 5.61 43.20 4.34
811 818 2.054687 TCGTCTACGCATTTGTCGTT 57.945 45.000 0.00 0.00 40.89 3.85
812 819 2.396601 TCGTCTACGCATTTGTCGTTT 58.603 42.857 0.00 0.00 40.89 3.60
813 820 2.154198 TCGTCTACGCATTTGTCGTTTG 59.846 45.455 0.00 1.80 40.89 2.93
814 821 2.097104 CGTCTACGCATTTGTCGTTTGT 60.097 45.455 5.61 0.00 40.89 2.83
815 822 3.119956 CGTCTACGCATTTGTCGTTTGTA 59.880 43.478 5.61 0.00 40.89 2.41
816 823 4.625135 GTCTACGCATTTGTCGTTTGTAG 58.375 43.478 5.61 0.00 40.89 2.74
817 824 4.383649 GTCTACGCATTTGTCGTTTGTAGA 59.616 41.667 5.61 0.00 40.89 2.59
818 825 3.788434 ACGCATTTGTCGTTTGTAGAG 57.212 42.857 0.00 0.00 36.72 2.43
819 826 2.096417 ACGCATTTGTCGTTTGTAGAGC 60.096 45.455 0.00 0.00 36.72 4.09
820 827 2.096466 CGCATTTGTCGTTTGTAGAGCA 60.096 45.455 0.00 0.00 0.00 4.26
821 828 3.482786 GCATTTGTCGTTTGTAGAGCAG 58.517 45.455 0.00 0.00 0.00 4.24
822 829 3.058914 GCATTTGTCGTTTGTAGAGCAGT 60.059 43.478 0.00 0.00 0.00 4.40
823 830 4.554723 GCATTTGTCGTTTGTAGAGCAGTT 60.555 41.667 0.00 0.00 0.00 3.16
824 831 5.510671 CATTTGTCGTTTGTAGAGCAGTTT 58.489 37.500 0.00 0.00 0.00 2.66
825 832 4.789095 TTGTCGTTTGTAGAGCAGTTTC 57.211 40.909 0.00 0.00 0.00 2.78
826 833 2.792674 TGTCGTTTGTAGAGCAGTTTCG 59.207 45.455 0.00 0.00 0.00 3.46
845 852 2.662070 TTCCAACCCGATCCCGACC 61.662 63.158 0.00 0.00 38.22 4.79
938 957 3.003173 CGCTTCCCCTGGTCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
1212 2943 4.409218 TGCGTGTACGAGGACGGC 62.409 66.667 8.82 0.00 44.46 5.68
1489 3247 2.127194 GATCGCGTCGGGATCTCG 60.127 66.667 33.12 9.25 44.85 4.04
1699 3463 1.067060 CGTGATCGTCTTGGCCAGATA 59.933 52.381 5.11 0.00 32.60 1.98
1704 3468 1.905512 GTCTTGGCCAGATACCCGT 59.094 57.895 5.11 0.00 32.60 5.28
1903 3722 7.572523 TCATTTTTCTGTGAGAGTGAACAAT 57.427 32.000 0.00 0.00 0.00 2.71
1930 3749 4.457466 CCATGGTGGTATTTACCTGTACC 58.543 47.826 2.57 7.80 46.58 3.34
1993 3812 0.178938 TCATCCAAAGGCCCAAGCAA 60.179 50.000 0.00 0.00 42.56 3.91
1998 3817 0.680618 CAAAGGCCCAAGCAATCACA 59.319 50.000 0.00 0.00 42.56 3.58
1999 3818 1.276989 CAAAGGCCCAAGCAATCACAT 59.723 47.619 0.00 0.00 42.56 3.21
2021 3840 6.779049 ACATGAGGCATGATACCATAATTTGT 59.221 34.615 13.79 0.00 43.81 2.83
2034 3853 6.905578 ACCATAATTTGTTAACGAGGTTCAC 58.094 36.000 0.26 0.00 0.00 3.18
2035 3854 6.487331 ACCATAATTTGTTAACGAGGTTCACA 59.513 34.615 0.26 0.00 29.43 3.58
2042 3861 7.731882 TTGTTAACGAGGTTCACAAATATGA 57.268 32.000 5.94 0.00 36.92 2.15
2050 3869 7.606456 ACGAGGTTCACAAATATGACTACATTT 59.394 33.333 0.00 0.00 37.87 2.32
2052 3871 7.974675 AGGTTCACAAATATGACTACATTTCG 58.025 34.615 0.00 0.00 37.87 3.46
2067 3886 2.380084 TTTCGTGGTCTGACTATGGC 57.620 50.000 12.61 0.00 0.00 4.40
2068 3887 1.262417 TTCGTGGTCTGACTATGGCA 58.738 50.000 12.61 0.00 0.00 4.92
2082 3910 1.626356 ATGGCAGCTCATGGTACCGT 61.626 55.000 7.57 3.49 29.93 4.83
2100 3928 3.071312 ACCGTTACAATACCACACCTTGA 59.929 43.478 0.00 0.00 0.00 3.02
2108 3936 1.896660 CCACACCTTGAACACCCGG 60.897 63.158 0.00 0.00 0.00 5.73
2113 3941 2.359975 CTTGAACACCCGGGCTCC 60.360 66.667 24.08 8.22 0.00 4.70
2153 3981 3.242706 GCGTGTGCTATCATGTTGCATAA 60.243 43.478 11.60 3.67 40.56 1.90
2185 4013 4.341235 GTGTGAGCACTACATCATACCCTA 59.659 45.833 1.99 0.00 42.13 3.53
2195 4023 4.880164 ACATCATACCCTACCTACACACT 58.120 43.478 0.00 0.00 0.00 3.55
2199 4027 6.022107 TCATACCCTACCTACACACTGTAT 57.978 41.667 0.00 0.00 31.66 2.29
2206 4034 6.039493 CCCTACCTACACACTGTATGACTTAG 59.961 46.154 0.00 0.00 31.66 2.18
2244 4073 8.149973 ACTTAACTTGTACACAATTTCGACAT 57.850 30.769 0.00 0.00 35.02 3.06
2277 4106 3.569304 TTTCGCTTGCGAATATTCTCG 57.431 42.857 27.08 3.22 41.84 4.04
2281 4110 2.726241 CGCTTGCGAATATTCTCGATCA 59.274 45.455 13.45 1.53 41.44 2.92
2282 4111 3.366121 CGCTTGCGAATATTCTCGATCAT 59.634 43.478 13.45 0.00 41.44 2.45
2323 4152 4.629634 TCGAACATCCATGTACATTGTGTC 59.370 41.667 5.37 8.02 40.80 3.67
2324 4153 4.391523 CGAACATCCATGTACATTGTGTCA 59.608 41.667 5.37 0.00 40.80 3.58
2343 4172 2.814913 AAGGGTTGAATCCGGCGGAC 62.815 60.000 33.71 20.51 32.98 4.79
2353 4182 2.593725 CGGCGGACCTCGGATAGA 60.594 66.667 0.00 0.00 39.69 1.98
2363 4192 2.973983 CTCGGATAGAGGGTCCCTAA 57.026 55.000 11.58 2.09 43.20 2.69
2372 4202 4.187506 AGAGGGTCCCTAACTAGTGATC 57.812 50.000 11.58 0.00 31.76 2.92
2530 4398 7.290857 TGTTCGCTTCTCTATTACAATGTTC 57.709 36.000 0.00 0.00 0.00 3.18
2531 4399 6.871492 TGTTCGCTTCTCTATTACAATGTTCA 59.129 34.615 0.00 0.00 0.00 3.18
2561 4429 6.012745 AGTAAGAGGAAAATCACAAGCCATT 58.987 36.000 0.00 0.00 0.00 3.16
2612 4480 0.907486 CTCCTGCAGAATGTCCTCCA 59.093 55.000 17.39 0.00 39.31 3.86
2634 4502 6.149973 TCCATTCTTCATTGTGTCAATGACTC 59.850 38.462 20.11 11.53 36.49 3.36
2638 4506 1.131126 CATTGTGTCAATGACTCCCGC 59.869 52.381 14.97 0.00 33.15 6.13
2667 4535 7.765819 TGTCAGAATTGATAATGAGACGATTGT 59.234 33.333 0.00 0.00 35.39 2.71
2679 4547 0.743345 ACGATTGTAGCCCGCCTTTC 60.743 55.000 0.00 0.00 0.00 2.62
2716 4584 3.120304 CCAAACCTAAGTGCTAACGCTTC 60.120 47.826 0.00 0.00 43.07 3.86
2725 4593 1.289109 GCTAACGCTTCCGCTGTCAA 61.289 55.000 0.00 0.00 38.22 3.18
2726 4594 0.716108 CTAACGCTTCCGCTGTCAAG 59.284 55.000 0.00 0.00 38.22 3.02
2732 4600 0.392193 CTTCCGCTGTCAAGGCATCT 60.392 55.000 0.00 0.00 0.00 2.90
2762 4632 6.735556 ACTCAATCTTCCAATTTCCACCTAT 58.264 36.000 0.00 0.00 0.00 2.57
2794 4664 3.073798 TCCTTTGTCATCCCTGCTAACAA 59.926 43.478 0.00 0.00 0.00 2.83
2795 4665 3.191371 CCTTTGTCATCCCTGCTAACAAC 59.809 47.826 0.00 0.00 30.14 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.796557 TCGTCTCACCTCTCATCAACT 58.203 47.619 0.00 0.00 0.00 3.16
20 21 3.577649 TTCGTCTCACCTCTCATCAAC 57.422 47.619 0.00 0.00 0.00 3.18
21 22 4.808414 ATTTCGTCTCACCTCTCATCAA 57.192 40.909 0.00 0.00 0.00 2.57
22 23 5.914898 TTATTTCGTCTCACCTCTCATCA 57.085 39.130 0.00 0.00 0.00 3.07
23 24 7.492669 TGATTTTATTTCGTCTCACCTCTCATC 59.507 37.037 0.00 0.00 0.00 2.92
24 25 7.331026 TGATTTTATTTCGTCTCACCTCTCAT 58.669 34.615 0.00 0.00 0.00 2.90
25 26 6.697395 TGATTTTATTTCGTCTCACCTCTCA 58.303 36.000 0.00 0.00 0.00 3.27
26 27 7.009723 GTCTGATTTTATTTCGTCTCACCTCTC 59.990 40.741 0.00 0.00 0.00 3.20
60 61 2.560105 GAGTTGGTAGTCTGGTACGGTT 59.440 50.000 0.00 0.00 35.30 4.44
192 193 0.623723 GGTTTCCATGGCCAGGTCTA 59.376 55.000 17.55 0.00 0.00 2.59
193 194 1.384191 GGTTTCCATGGCCAGGTCT 59.616 57.895 17.55 0.00 0.00 3.85
194 195 1.682344 GGGTTTCCATGGCCAGGTC 60.682 63.158 17.55 9.94 0.00 3.85
195 196 2.445155 GGGTTTCCATGGCCAGGT 59.555 61.111 17.55 0.00 0.00 4.00
196 197 2.755469 CGGGTTTCCATGGCCAGG 60.755 66.667 13.05 12.17 0.00 4.45
197 198 2.755469 CCGGGTTTCCATGGCCAG 60.755 66.667 13.05 3.29 0.00 4.85
198 199 3.577334 GACCGGGTTTCCATGGCCA 62.577 63.158 8.56 8.56 0.00 5.36
199 200 2.754254 GACCGGGTTTCCATGGCC 60.754 66.667 6.96 2.03 0.00 5.36
200 201 2.754254 GGACCGGGTTTCCATGGC 60.754 66.667 6.96 0.00 32.82 4.40
201 202 2.437716 CGGACCGGGTTTCCATGG 60.438 66.667 4.97 4.97 31.94 3.66
202 203 2.437716 CCGGACCGGGTTTCCATG 60.438 66.667 26.15 0.00 44.15 3.66
226 227 3.743534 TTTTAGATCGGGCCGGGCG 62.744 63.158 27.98 17.17 0.00 6.13
227 228 1.452470 TTTTTAGATCGGGCCGGGC 60.452 57.895 27.98 22.00 0.00 6.13
228 229 4.968370 TTTTTAGATCGGGCCGGG 57.032 55.556 27.98 0.00 0.00 5.73
263 264 4.820744 CCCATGGGCAAGGTCGGG 62.821 72.222 20.41 0.00 0.00 5.14
285 286 2.967599 CCTAAAAATCAGGCCCAAGC 57.032 50.000 0.00 0.00 38.76 4.01
292 293 1.956477 CCATCGGGCCTAAAAATCAGG 59.044 52.381 0.84 0.00 36.16 3.86
327 328 1.529244 AAATATGGCAGGCCCGAGC 60.529 57.895 8.02 0.35 35.87 5.03
328 329 1.799258 GCAAATATGGCAGGCCCGAG 61.799 60.000 8.02 0.00 35.87 4.63
329 330 1.827789 GCAAATATGGCAGGCCCGA 60.828 57.895 8.02 0.00 35.87 5.14
330 331 2.730094 GCAAATATGGCAGGCCCG 59.270 61.111 8.02 0.00 35.87 6.13
338 339 6.208644 CCTCTTCGTTAAATGGCAAATATGG 58.791 40.000 0.00 0.00 0.00 2.74
339 340 5.687285 GCCTCTTCGTTAAATGGCAAATATG 59.313 40.000 0.00 0.00 36.76 1.78
340 341 5.221244 GGCCTCTTCGTTAAATGGCAAATAT 60.221 40.000 0.00 0.00 37.82 1.28
341 342 4.097286 GGCCTCTTCGTTAAATGGCAAATA 59.903 41.667 0.00 0.00 37.82 1.40
342 343 3.119137 GGCCTCTTCGTTAAATGGCAAAT 60.119 43.478 0.00 0.00 37.82 2.32
343 344 2.230266 GGCCTCTTCGTTAAATGGCAAA 59.770 45.455 0.00 0.00 37.82 3.68
344 345 1.816224 GGCCTCTTCGTTAAATGGCAA 59.184 47.619 0.00 0.00 37.82 4.52
345 346 1.459450 GGCCTCTTCGTTAAATGGCA 58.541 50.000 0.00 0.00 37.82 4.92
346 347 0.738975 GGGCCTCTTCGTTAAATGGC 59.261 55.000 0.84 0.00 36.32 4.40
347 348 1.014352 CGGGCCTCTTCGTTAAATGG 58.986 55.000 0.84 0.00 0.00 3.16
348 349 1.014352 CCGGGCCTCTTCGTTAAATG 58.986 55.000 0.84 0.00 0.00 2.32
349 350 0.746923 GCCGGGCCTCTTCGTTAAAT 60.747 55.000 8.12 0.00 0.00 1.40
350 351 1.376295 GCCGGGCCTCTTCGTTAAA 60.376 57.895 8.12 0.00 0.00 1.52
351 352 2.266689 GCCGGGCCTCTTCGTTAA 59.733 61.111 8.12 0.00 0.00 2.01
352 353 3.777910 GGCCGGGCCTCTTCGTTA 61.778 66.667 30.86 0.00 46.69 3.18
383 384 1.028905 TCAGTCAAAAAGCCCAACGG 58.971 50.000 0.00 0.00 0.00 4.44
384 385 2.607771 CCATCAGTCAAAAAGCCCAACG 60.608 50.000 0.00 0.00 0.00 4.10
385 386 2.289010 CCCATCAGTCAAAAAGCCCAAC 60.289 50.000 0.00 0.00 0.00 3.77
386 387 1.969923 CCCATCAGTCAAAAAGCCCAA 59.030 47.619 0.00 0.00 0.00 4.12
387 388 1.631405 CCCATCAGTCAAAAAGCCCA 58.369 50.000 0.00 0.00 0.00 5.36
388 389 0.247460 GCCCATCAGTCAAAAAGCCC 59.753 55.000 0.00 0.00 0.00 5.19
389 390 0.247460 GGCCCATCAGTCAAAAAGCC 59.753 55.000 0.00 0.00 0.00 4.35
390 391 0.109132 CGGCCCATCAGTCAAAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
391 392 0.527565 CCGGCCCATCAGTCAAAAAG 59.472 55.000 0.00 0.00 0.00 2.27
392 393 0.897863 CCCGGCCCATCAGTCAAAAA 60.898 55.000 0.00 0.00 0.00 1.94
393 394 1.304052 CCCGGCCCATCAGTCAAAA 60.304 57.895 0.00 0.00 0.00 2.44
394 395 2.354729 CCCGGCCCATCAGTCAAA 59.645 61.111 0.00 0.00 0.00 2.69
395 396 4.424711 GCCCGGCCCATCAGTCAA 62.425 66.667 0.00 0.00 0.00 3.18
397 398 4.554036 GAGCCCGGCCCATCAGTC 62.554 72.222 5.55 0.00 0.00 3.51
411 412 0.250081 CCTAGATTTCAGGCCCGAGC 60.250 60.000 0.00 0.00 38.76 5.03
412 413 3.997672 CCTAGATTTCAGGCCCGAG 57.002 57.895 0.00 0.00 0.00 4.63
418 419 0.249489 CGTCGGGCCTAGATTTCAGG 60.249 60.000 0.84 0.00 36.16 3.86
419 420 0.249489 CCGTCGGGCCTAGATTTCAG 60.249 60.000 2.34 0.00 0.00 3.02
420 421 1.820581 CCGTCGGGCCTAGATTTCA 59.179 57.895 2.34 0.00 0.00 2.69
421 422 4.752514 CCGTCGGGCCTAGATTTC 57.247 61.111 2.34 0.00 0.00 2.17
453 454 2.600470 AAAAACCTGGGCCCGAGC 60.600 61.111 19.37 0.00 38.76 5.03
467 468 2.100605 AACAAAGCCCGTTGCAAAAA 57.899 40.000 0.00 0.00 44.83 1.94
468 469 1.734465 CAAACAAAGCCCGTTGCAAAA 59.266 42.857 0.00 0.00 44.83 2.44
469 470 1.363744 CAAACAAAGCCCGTTGCAAA 58.636 45.000 0.00 0.00 44.83 3.68
470 471 0.460987 CCAAACAAAGCCCGTTGCAA 60.461 50.000 0.00 0.00 44.83 4.08
471 472 1.142748 CCAAACAAAGCCCGTTGCA 59.857 52.632 0.00 0.00 44.83 4.08
472 473 2.243957 GCCAAACAAAGCCCGTTGC 61.244 57.895 0.00 0.00 41.71 4.17
473 474 1.594021 GGCCAAACAAAGCCCGTTG 60.594 57.895 0.00 0.00 43.76 4.10
474 475 2.818841 GGCCAAACAAAGCCCGTT 59.181 55.556 0.00 0.00 43.76 4.44
495 496 0.106719 ATACCTGGCCAAATGTCGGG 60.107 55.000 7.01 4.92 0.00 5.14
496 497 2.616842 GTTATACCTGGCCAAATGTCGG 59.383 50.000 7.01 5.79 0.00 4.79
497 498 2.616842 GGTTATACCTGGCCAAATGTCG 59.383 50.000 7.01 0.00 34.73 4.35
498 499 3.380320 GTGGTTATACCTGGCCAAATGTC 59.620 47.826 7.01 0.00 39.58 3.06
499 500 3.361786 GTGGTTATACCTGGCCAAATGT 58.638 45.455 7.01 7.21 39.58 2.71
500 501 2.693074 GGTGGTTATACCTGGCCAAATG 59.307 50.000 7.01 0.12 39.58 2.32
501 502 2.313342 TGGTGGTTATACCTGGCCAAAT 59.687 45.455 7.01 3.30 41.43 2.32
502 503 1.711375 TGGTGGTTATACCTGGCCAAA 59.289 47.619 7.01 0.00 41.43 3.28
503 504 1.004979 GTGGTGGTTATACCTGGCCAA 59.995 52.381 7.01 0.00 41.43 4.52
504 505 0.621609 GTGGTGGTTATACCTGGCCA 59.378 55.000 4.71 4.71 41.43 5.36
505 506 0.106868 GGTGGTGGTTATACCTGGCC 60.107 60.000 0.00 0.00 41.43 5.36
506 507 0.916809 AGGTGGTGGTTATACCTGGC 59.083 55.000 0.00 0.00 42.95 4.85
507 508 2.092592 GGAAGGTGGTGGTTATACCTGG 60.093 54.545 0.00 0.00 43.75 4.45
508 509 2.419574 CGGAAGGTGGTGGTTATACCTG 60.420 54.545 0.00 0.00 43.75 4.00
509 510 1.835531 CGGAAGGTGGTGGTTATACCT 59.164 52.381 0.00 0.00 46.38 3.08
510 511 1.744798 GCGGAAGGTGGTGGTTATACC 60.745 57.143 0.00 0.00 41.24 2.73
511 512 1.065998 TGCGGAAGGTGGTGGTTATAC 60.066 52.381 0.00 0.00 0.00 1.47
512 513 1.208535 CTGCGGAAGGTGGTGGTTATA 59.791 52.381 0.00 0.00 0.00 0.98
513 514 0.035439 CTGCGGAAGGTGGTGGTTAT 60.035 55.000 0.00 0.00 0.00 1.89
514 515 1.373435 CTGCGGAAGGTGGTGGTTA 59.627 57.895 0.00 0.00 0.00 2.85
515 516 2.113139 CTGCGGAAGGTGGTGGTT 59.887 61.111 0.00 0.00 0.00 3.67
516 517 3.953775 CCTGCGGAAGGTGGTGGT 61.954 66.667 0.00 0.00 41.74 4.16
598 604 2.694213 TCTGTTTCGATTGGCATTCGA 58.306 42.857 25.39 25.39 43.35 3.71
668 675 1.476845 TAGCACTGCTCGGGTTGGAA 61.477 55.000 6.86 0.00 40.44 3.53
669 676 1.264749 ATAGCACTGCTCGGGTTGGA 61.265 55.000 6.86 0.00 40.44 3.53
670 677 0.464036 TATAGCACTGCTCGGGTTGG 59.536 55.000 6.86 0.00 40.44 3.77
671 678 1.134818 TGTATAGCACTGCTCGGGTTG 60.135 52.381 6.86 0.00 40.44 3.77
672 679 1.137086 CTGTATAGCACTGCTCGGGTT 59.863 52.381 6.86 0.00 40.44 4.11
673 680 0.747255 CTGTATAGCACTGCTCGGGT 59.253 55.000 6.86 0.00 40.44 5.28
674 681 1.032794 TCTGTATAGCACTGCTCGGG 58.967 55.000 6.86 0.00 40.44 5.14
675 682 1.598183 CGTCTGTATAGCACTGCTCGG 60.598 57.143 6.86 0.00 40.44 4.63
676 683 1.330829 TCGTCTGTATAGCACTGCTCG 59.669 52.381 6.86 3.23 40.44 5.03
677 684 2.097629 TGTCGTCTGTATAGCACTGCTC 59.902 50.000 6.86 0.00 40.44 4.26
678 685 2.092323 TGTCGTCTGTATAGCACTGCT 58.908 47.619 8.95 8.95 43.41 4.24
679 686 2.561733 TGTCGTCTGTATAGCACTGC 57.438 50.000 0.00 0.00 0.00 4.40
680 687 4.684242 TGTTTTGTCGTCTGTATAGCACTG 59.316 41.667 0.00 0.00 0.00 3.66
681 688 4.684703 GTGTTTTGTCGTCTGTATAGCACT 59.315 41.667 0.00 0.00 0.00 4.40
682 689 4.432503 CGTGTTTTGTCGTCTGTATAGCAC 60.433 45.833 0.00 0.00 0.00 4.40
683 690 3.671459 CGTGTTTTGTCGTCTGTATAGCA 59.329 43.478 0.00 0.00 0.00 3.49
684 691 3.060363 CCGTGTTTTGTCGTCTGTATAGC 59.940 47.826 0.00 0.00 0.00 2.97
685 692 4.322804 GTCCGTGTTTTGTCGTCTGTATAG 59.677 45.833 0.00 0.00 0.00 1.31
686 693 4.229096 GTCCGTGTTTTGTCGTCTGTATA 58.771 43.478 0.00 0.00 0.00 1.47
687 694 3.054878 GTCCGTGTTTTGTCGTCTGTAT 58.945 45.455 0.00 0.00 0.00 2.29
688 695 2.462889 GTCCGTGTTTTGTCGTCTGTA 58.537 47.619 0.00 0.00 0.00 2.74
689 696 1.283736 GTCCGTGTTTTGTCGTCTGT 58.716 50.000 0.00 0.00 0.00 3.41
690 697 0.228742 CGTCCGTGTTTTGTCGTCTG 59.771 55.000 0.00 0.00 0.00 3.51
691 698 0.101040 TCGTCCGTGTTTTGTCGTCT 59.899 50.000 0.00 0.00 0.00 4.18
692 699 1.134226 ATCGTCCGTGTTTTGTCGTC 58.866 50.000 0.00 0.00 0.00 4.20
693 700 1.523934 GAATCGTCCGTGTTTTGTCGT 59.476 47.619 0.00 0.00 0.00 4.34
694 701 1.523515 TGAATCGTCCGTGTTTTGTCG 59.476 47.619 0.00 0.00 0.00 4.35
695 702 3.806316 ATGAATCGTCCGTGTTTTGTC 57.194 42.857 0.00 0.00 0.00 3.18
696 703 4.059511 TGTATGAATCGTCCGTGTTTTGT 58.940 39.130 0.00 0.00 0.00 2.83
697 704 4.391358 GTGTATGAATCGTCCGTGTTTTG 58.609 43.478 0.00 0.00 0.00 2.44
698 705 3.122278 CGTGTATGAATCGTCCGTGTTTT 59.878 43.478 0.00 0.00 0.00 2.43
699 706 2.664568 CGTGTATGAATCGTCCGTGTTT 59.335 45.455 0.00 0.00 0.00 2.83
700 707 2.095110 TCGTGTATGAATCGTCCGTGTT 60.095 45.455 0.00 0.00 0.00 3.32
701 708 1.469703 TCGTGTATGAATCGTCCGTGT 59.530 47.619 0.00 0.00 0.00 4.49
702 709 1.844357 GTCGTGTATGAATCGTCCGTG 59.156 52.381 0.00 0.00 0.00 4.94
703 710 1.469703 TGTCGTGTATGAATCGTCCGT 59.530 47.619 0.00 0.00 0.00 4.69
704 711 2.109463 CTGTCGTGTATGAATCGTCCG 58.891 52.381 0.00 0.00 0.00 4.79
705 712 2.852413 CACTGTCGTGTATGAATCGTCC 59.148 50.000 0.00 0.00 36.39 4.79
706 713 3.754955 TCACTGTCGTGTATGAATCGTC 58.245 45.455 0.00 0.00 41.89 4.20
707 714 3.842732 TCACTGTCGTGTATGAATCGT 57.157 42.857 0.00 0.00 41.89 3.73
708 715 5.702622 ATTTCACTGTCGTGTATGAATCG 57.297 39.130 0.00 0.00 41.89 3.34
709 716 7.060600 TGAATTTCACTGTCGTGTATGAATC 57.939 36.000 0.00 0.00 41.89 2.52
710 717 6.402550 GCTGAATTTCACTGTCGTGTATGAAT 60.403 38.462 0.00 0.00 41.89 2.57
711 718 5.107104 GCTGAATTTCACTGTCGTGTATGAA 60.107 40.000 0.00 0.00 41.89 2.57
712 719 4.388773 GCTGAATTTCACTGTCGTGTATGA 59.611 41.667 0.00 0.00 41.89 2.15
713 720 4.436050 GGCTGAATTTCACTGTCGTGTATG 60.436 45.833 0.00 0.00 41.89 2.39
714 721 3.684788 GGCTGAATTTCACTGTCGTGTAT 59.315 43.478 0.00 0.00 41.89 2.29
715 722 3.064207 GGCTGAATTTCACTGTCGTGTA 58.936 45.455 0.00 0.00 41.89 2.90
716 723 1.873591 GGCTGAATTTCACTGTCGTGT 59.126 47.619 0.00 0.00 41.89 4.49
717 724 1.136252 CGGCTGAATTTCACTGTCGTG 60.136 52.381 4.91 0.00 42.59 4.35
718 725 1.148310 CGGCTGAATTTCACTGTCGT 58.852 50.000 4.91 0.00 31.76 4.34
719 726 1.136252 CACGGCTGAATTTCACTGTCG 60.136 52.381 10.10 10.10 39.43 4.35
720 727 1.400242 GCACGGCTGAATTTCACTGTC 60.400 52.381 0.00 0.00 0.00 3.51
721 728 0.593128 GCACGGCTGAATTTCACTGT 59.407 50.000 0.00 1.94 0.00 3.55
722 729 0.592637 TGCACGGCTGAATTTCACTG 59.407 50.000 0.00 1.36 0.00 3.66
723 730 1.200716 CATGCACGGCTGAATTTCACT 59.799 47.619 0.00 0.00 0.00 3.41
724 731 1.621107 CATGCACGGCTGAATTTCAC 58.379 50.000 0.00 0.00 0.00 3.18
725 732 0.109179 GCATGCACGGCTGAATTTCA 60.109 50.000 14.21 0.00 0.00 2.69
726 733 0.109179 TGCATGCACGGCTGAATTTC 60.109 50.000 18.46 0.00 0.00 2.17
727 734 0.533491 ATGCATGCACGGCTGAATTT 59.467 45.000 25.37 0.00 0.00 1.82
728 735 0.179121 CATGCATGCACGGCTGAATT 60.179 50.000 25.37 0.00 0.00 2.17
729 736 1.317431 ACATGCATGCACGGCTGAAT 61.317 50.000 25.37 0.38 0.00 2.57
730 737 1.972752 ACATGCATGCACGGCTGAA 60.973 52.632 25.37 0.00 0.00 3.02
731 738 2.360225 ACATGCATGCACGGCTGA 60.360 55.556 25.37 0.00 0.00 4.26
732 739 1.646624 TACACATGCATGCACGGCTG 61.647 55.000 25.37 19.72 0.00 4.85
733 740 0.749091 ATACACATGCATGCACGGCT 60.749 50.000 25.37 3.57 0.00 5.52
734 741 0.943673 TATACACATGCATGCACGGC 59.056 50.000 25.37 5.27 0.00 5.68
735 742 2.032636 CACTATACACATGCATGCACGG 60.033 50.000 25.37 20.51 0.00 4.94
736 743 2.032636 CCACTATACACATGCATGCACG 60.033 50.000 25.37 19.13 0.00 5.34
737 744 3.205338 TCCACTATACACATGCATGCAC 58.795 45.455 25.37 0.00 0.00 4.57
738 745 3.469739 CTCCACTATACACATGCATGCA 58.530 45.455 26.53 25.04 0.00 3.96
739 746 2.225019 GCTCCACTATACACATGCATGC 59.775 50.000 26.53 11.82 0.00 4.06
740 747 2.477754 CGCTCCACTATACACATGCATG 59.522 50.000 25.09 25.09 0.00 4.06
741 748 2.365293 TCGCTCCACTATACACATGCAT 59.635 45.455 0.00 0.00 0.00 3.96
742 749 1.754226 TCGCTCCACTATACACATGCA 59.246 47.619 0.00 0.00 0.00 3.96
743 750 2.128035 GTCGCTCCACTATACACATGC 58.872 52.381 0.00 0.00 0.00 4.06
744 751 3.375642 CTGTCGCTCCACTATACACATG 58.624 50.000 0.00 0.00 0.00 3.21
745 752 2.223829 GCTGTCGCTCCACTATACACAT 60.224 50.000 0.00 0.00 0.00 3.21
746 753 1.134367 GCTGTCGCTCCACTATACACA 59.866 52.381 0.00 0.00 0.00 3.72
747 754 1.536284 GGCTGTCGCTCCACTATACAC 60.536 57.143 0.00 0.00 36.09 2.90
748 755 0.744874 GGCTGTCGCTCCACTATACA 59.255 55.000 0.00 0.00 36.09 2.29
749 756 0.317938 CGGCTGTCGCTCCACTATAC 60.318 60.000 0.00 0.00 36.09 1.47
750 757 0.750546 ACGGCTGTCGCTCCACTATA 60.751 55.000 0.00 0.00 43.89 1.31
751 758 2.005960 GACGGCTGTCGCTCCACTAT 62.006 60.000 10.53 0.00 43.89 2.12
752 759 2.675423 ACGGCTGTCGCTCCACTA 60.675 61.111 0.00 0.00 43.89 2.74
753 760 4.057428 GACGGCTGTCGCTCCACT 62.057 66.667 10.53 0.00 43.89 4.00
761 768 1.134560 ACTAAGAATCCGACGGCTGTC 59.865 52.381 16.12 16.12 41.91 3.51
762 769 1.134560 GACTAAGAATCCGACGGCTGT 59.865 52.381 9.66 0.00 0.00 4.40
763 770 1.841450 GACTAAGAATCCGACGGCTG 58.159 55.000 9.66 0.00 0.00 4.85
764 771 0.381089 CGACTAAGAATCCGACGGCT 59.619 55.000 9.66 0.00 0.00 5.52
765 772 0.100146 ACGACTAAGAATCCGACGGC 59.900 55.000 9.66 0.00 0.00 5.68
766 773 1.268437 GGACGACTAAGAATCCGACGG 60.268 57.143 7.84 7.84 0.00 4.79
767 774 1.669779 AGGACGACTAAGAATCCGACG 59.330 52.381 0.00 0.00 36.28 5.12
768 775 2.681848 TGAGGACGACTAAGAATCCGAC 59.318 50.000 0.00 0.00 36.28 4.79
769 776 2.681848 GTGAGGACGACTAAGAATCCGA 59.318 50.000 0.00 0.00 36.28 4.55
770 777 2.422479 TGTGAGGACGACTAAGAATCCG 59.578 50.000 0.00 0.00 36.28 4.18
771 778 4.612943 GATGTGAGGACGACTAAGAATCC 58.387 47.826 0.00 0.00 0.00 3.01
772 779 4.201930 ACGATGTGAGGACGACTAAGAATC 60.202 45.833 0.00 0.00 0.00 2.52
773 780 3.695060 ACGATGTGAGGACGACTAAGAAT 59.305 43.478 0.00 0.00 0.00 2.40
774 781 3.079578 ACGATGTGAGGACGACTAAGAA 58.920 45.455 0.00 0.00 0.00 2.52
775 782 2.676839 GACGATGTGAGGACGACTAAGA 59.323 50.000 0.00 0.00 0.00 2.10
776 783 2.678836 AGACGATGTGAGGACGACTAAG 59.321 50.000 0.00 0.00 31.73 2.18
777 784 2.708051 AGACGATGTGAGGACGACTAA 58.292 47.619 0.00 0.00 31.73 2.24
778 785 2.398252 AGACGATGTGAGGACGACTA 57.602 50.000 0.00 0.00 31.73 2.59
779 786 2.008329 GTAGACGATGTGAGGACGACT 58.992 52.381 0.00 0.00 36.33 4.18
780 787 1.267433 CGTAGACGATGTGAGGACGAC 60.267 57.143 0.00 0.00 43.02 4.34
781 788 1.004595 CGTAGACGATGTGAGGACGA 58.995 55.000 0.00 0.00 43.02 4.20
782 789 0.589229 GCGTAGACGATGTGAGGACG 60.589 60.000 6.19 0.00 43.02 4.79
783 790 0.450583 TGCGTAGACGATGTGAGGAC 59.549 55.000 6.19 0.00 43.02 3.85
784 791 1.389555 ATGCGTAGACGATGTGAGGA 58.610 50.000 6.19 0.00 43.02 3.71
785 792 2.209838 AATGCGTAGACGATGTGAGG 57.790 50.000 6.19 0.00 43.02 3.86
786 793 2.923655 ACAAATGCGTAGACGATGTGAG 59.076 45.455 6.19 0.00 43.02 3.51
787 794 2.921121 GACAAATGCGTAGACGATGTGA 59.079 45.455 6.19 0.00 43.02 3.58
788 795 2.284457 CGACAAATGCGTAGACGATGTG 60.284 50.000 6.19 4.97 43.02 3.21
789 796 1.917955 CGACAAATGCGTAGACGATGT 59.082 47.619 6.19 4.78 43.02 3.06
790 797 1.917955 ACGACAAATGCGTAGACGATG 59.082 47.619 6.19 1.63 40.65 3.84
791 798 2.273370 ACGACAAATGCGTAGACGAT 57.727 45.000 6.19 0.00 40.65 3.73
792 799 2.054687 AACGACAAATGCGTAGACGA 57.945 45.000 6.19 0.00 41.75 4.20
793 800 2.097104 ACAAACGACAAATGCGTAGACG 60.097 45.455 0.00 0.00 41.75 4.18
794 801 3.515071 ACAAACGACAAATGCGTAGAC 57.485 42.857 0.00 0.00 41.75 2.59
795 802 4.548494 TCTACAAACGACAAATGCGTAGA 58.452 39.130 0.00 0.00 41.75 2.59
796 803 4.721226 GCTCTACAAACGACAAATGCGTAG 60.721 45.833 0.00 0.00 41.75 3.51
797 804 3.122278 GCTCTACAAACGACAAATGCGTA 59.878 43.478 0.00 0.00 41.75 4.42
798 805 2.096417 GCTCTACAAACGACAAATGCGT 60.096 45.455 0.00 0.00 44.94 5.24
799 806 2.096466 TGCTCTACAAACGACAAATGCG 60.096 45.455 0.00 0.00 0.00 4.73
800 807 3.058914 ACTGCTCTACAAACGACAAATGC 60.059 43.478 0.00 0.00 0.00 3.56
801 808 4.732285 ACTGCTCTACAAACGACAAATG 57.268 40.909 0.00 0.00 0.00 2.32
802 809 5.558273 CGAAACTGCTCTACAAACGACAAAT 60.558 40.000 0.00 0.00 0.00 2.32
803 810 4.260051 CGAAACTGCTCTACAAACGACAAA 60.260 41.667 0.00 0.00 0.00 2.83
804 811 3.244345 CGAAACTGCTCTACAAACGACAA 59.756 43.478 0.00 0.00 0.00 3.18
805 812 2.792674 CGAAACTGCTCTACAAACGACA 59.207 45.455 0.00 0.00 0.00 4.35
806 813 2.793232 ACGAAACTGCTCTACAAACGAC 59.207 45.455 0.00 0.00 0.00 4.34
807 814 3.088194 ACGAAACTGCTCTACAAACGA 57.912 42.857 0.00 0.00 0.00 3.85
808 815 3.362693 GGAACGAAACTGCTCTACAAACG 60.363 47.826 0.00 0.00 0.00 3.60
809 816 3.558418 TGGAACGAAACTGCTCTACAAAC 59.442 43.478 0.00 0.00 0.00 2.93
810 817 3.799366 TGGAACGAAACTGCTCTACAAA 58.201 40.909 0.00 0.00 0.00 2.83
811 818 3.462483 TGGAACGAAACTGCTCTACAA 57.538 42.857 0.00 0.00 0.00 2.41
812 819 3.128349 GTTGGAACGAAACTGCTCTACA 58.872 45.455 0.00 0.00 0.00 2.74
813 820 2.479275 GGTTGGAACGAAACTGCTCTAC 59.521 50.000 0.00 0.00 0.00 2.59
814 821 2.549349 GGGTTGGAACGAAACTGCTCTA 60.549 50.000 0.00 0.00 0.00 2.43
815 822 1.594331 GGTTGGAACGAAACTGCTCT 58.406 50.000 0.00 0.00 0.00 4.09
816 823 0.591659 GGGTTGGAACGAAACTGCTC 59.408 55.000 0.00 0.00 0.00 4.26
817 824 1.164041 CGGGTTGGAACGAAACTGCT 61.164 55.000 0.00 0.00 0.00 4.24
818 825 1.161563 TCGGGTTGGAACGAAACTGC 61.162 55.000 0.00 0.00 36.01 4.40
819 826 1.463444 GATCGGGTTGGAACGAAACTG 59.537 52.381 0.00 0.00 42.88 3.16
820 827 1.609841 GGATCGGGTTGGAACGAAACT 60.610 52.381 0.00 0.00 42.88 2.66
821 828 0.800631 GGATCGGGTTGGAACGAAAC 59.199 55.000 0.00 0.00 42.88 2.78
822 829 0.321830 GGGATCGGGTTGGAACGAAA 60.322 55.000 0.00 0.00 42.88 3.46
823 830 1.297364 GGGATCGGGTTGGAACGAA 59.703 57.895 0.00 0.00 42.88 3.85
824 831 2.983791 GGGATCGGGTTGGAACGA 59.016 61.111 0.00 0.00 43.85 3.85
825 832 2.510691 CGGGATCGGGTTGGAACG 60.511 66.667 0.00 0.00 0.00 3.95
826 833 1.449070 GTCGGGATCGGGTTGGAAC 60.449 63.158 0.00 0.00 36.95 3.62
938 957 4.585162 CCGGGTAGACAGATTTGACTAGAT 59.415 45.833 0.00 0.00 33.36 1.98
1338 3090 0.890996 CCCTGTCCCTGAAGTTGTGC 60.891 60.000 0.00 0.00 0.00 4.57
1489 3247 0.451783 AATCGAGGGCATTGTTTCGC 59.548 50.000 0.00 0.00 33.36 4.70
1889 3708 6.016276 ACCATGGTAAAATTGTTCACTCTCAC 60.016 38.462 18.10 0.00 0.00 3.51
1993 3812 4.652679 ATGGTATCATGCCTCATGTGAT 57.347 40.909 6.68 0.00 41.98 3.06
1998 3817 7.844493 AACAAATTATGGTATCATGCCTCAT 57.156 32.000 0.00 0.00 34.96 2.90
1999 3818 8.629158 GTTAACAAATTATGGTATCATGCCTCA 58.371 33.333 0.00 0.00 34.96 3.86
2021 3840 8.089597 TGTAGTCATATTTGTGAACCTCGTTAA 58.910 33.333 0.00 0.00 0.00 2.01
2034 3853 7.277760 TCAGACCACGAAATGTAGTCATATTTG 59.722 37.037 0.00 0.00 41.10 2.32
2035 3854 7.277981 GTCAGACCACGAAATGTAGTCATATTT 59.722 37.037 0.00 0.00 41.10 1.40
2039 3858 4.220821 AGTCAGACCACGAAATGTAGTCAT 59.779 41.667 0.00 0.00 41.10 3.06
2042 3861 5.394224 CCATAGTCAGACCACGAAATGTAGT 60.394 44.000 0.00 0.00 0.00 2.73
2050 3869 0.817654 CTGCCATAGTCAGACCACGA 59.182 55.000 0.00 0.00 33.54 4.35
2052 3871 0.539051 AGCTGCCATAGTCAGACCAC 59.461 55.000 0.00 0.00 33.54 4.16
2057 3876 1.140452 ACCATGAGCTGCCATAGTCAG 59.860 52.381 0.00 0.00 34.79 3.51
2067 3886 2.665649 TGTAACGGTACCATGAGCTG 57.334 50.000 13.54 0.00 0.00 4.24
2068 3887 3.906720 ATTGTAACGGTACCATGAGCT 57.093 42.857 13.54 0.00 0.00 4.09
2082 3910 4.822896 GGTGTTCAAGGTGTGGTATTGTAA 59.177 41.667 0.00 0.00 0.00 2.41
2127 3955 1.011904 CATGATAGCACACGCACGC 60.012 57.895 0.00 0.00 42.27 5.34
2133 3961 5.490139 ACTTATGCAACATGATAGCACAC 57.510 39.130 12.21 0.00 41.60 3.82
2185 4013 6.246919 ACTCTAAGTCATACAGTGTGTAGGT 58.753 40.000 5.88 0.00 36.14 3.08
2221 4049 9.866936 GTTATGTCGAAATTGTGTACAAGTTAA 57.133 29.630 10.00 0.64 43.10 2.01
2224 4052 7.095355 GGAGTTATGTCGAAATTGTGTACAAGT 60.095 37.037 0.00 0.00 39.47 3.16
2225 4053 7.095397 TGGAGTTATGTCGAAATTGTGTACAAG 60.095 37.037 0.00 0.00 39.47 3.16
2244 4073 4.295051 GCAAGCGAAATTTGTTGGAGTTA 58.705 39.130 0.00 0.00 0.00 2.24
2323 4152 2.406616 CCGCCGGATTCAACCCTTG 61.407 63.158 5.05 0.00 0.00 3.61
2324 4153 2.045340 CCGCCGGATTCAACCCTT 60.045 61.111 5.05 0.00 0.00 3.95
2349 4178 5.617851 AGATCACTAGTTAGGGACCCTCTAT 59.382 44.000 19.05 6.41 38.80 1.98
2353 4182 4.628661 AAGATCACTAGTTAGGGACCCT 57.371 45.455 19.48 19.48 38.80 4.34
2499 4367 7.823665 TGTAATAGAGAAGCGAACAAAGTAGA 58.176 34.615 0.00 0.00 0.00 2.59
2530 4398 9.884465 CTTGTGATTTTCCTCTTACTAGTTTTG 57.116 33.333 0.00 0.00 0.00 2.44
2531 4399 8.568794 GCTTGTGATTTTCCTCTTACTAGTTTT 58.431 33.333 0.00 0.00 0.00 2.43
2567 4435 2.165998 GCTGCAATCTTTGAGGGTTCT 58.834 47.619 0.00 0.00 0.00 3.01
2568 4436 1.203287 GGCTGCAATCTTTGAGGGTTC 59.797 52.381 0.50 0.00 0.00 3.62
2571 4439 0.962356 ACGGCTGCAATCTTTGAGGG 60.962 55.000 0.50 0.00 0.00 4.30
2612 4480 5.416952 GGGAGTCATTGACACAATGAAGAAT 59.583 40.000 22.74 12.71 38.27 2.40
2634 4502 1.086696 ATCAATTCTGACAACGCGGG 58.913 50.000 12.47 4.46 33.30 6.13
2638 4506 6.253512 TCGTCTCATTATCAATTCTGACAACG 59.746 38.462 0.00 0.00 33.30 4.10
2679 4547 2.058057 GTTTGGCTTATTGTTGGCACG 58.942 47.619 0.00 0.00 38.46 5.34
2686 4554 4.407365 AGCACTTAGGTTTGGCTTATTGT 58.593 39.130 0.00 0.00 0.00 2.71
2716 4584 2.758089 GCAGATGCCTTGACAGCGG 61.758 63.158 0.00 0.00 34.31 5.52
2725 4593 2.089980 GATTGAGTTGTGCAGATGCCT 58.910 47.619 1.72 0.00 41.18 4.75
2726 4594 2.089980 AGATTGAGTTGTGCAGATGCC 58.910 47.619 1.72 0.00 41.18 4.40
2732 4600 5.509501 GGAAATTGGAAGATTGAGTTGTGCA 60.510 40.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.