Multiple sequence alignment - TraesCS3A01G127700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G127700 chr3A 100.000 3246 0 0 2147 5392 103620697 103617452 0.000000e+00 5995
1 TraesCS3A01G127700 chr3A 100.000 1711 0 0 1 1711 103622843 103621133 0.000000e+00 3160
2 TraesCS3A01G127700 chr3D 96.157 3253 75 17 2147 5392 86938306 86935097 0.000000e+00 5269
3 TraesCS3A01G127700 chr3D 90.641 1528 37 29 212 1711 86939863 86938414 0.000000e+00 1932
4 TraesCS3A01G127700 chr3B 95.646 2848 59 12 2148 4987 136802666 136799876 0.000000e+00 4512
5 TraesCS3A01G127700 chr3B 89.163 1541 49 35 212 1711 136804234 136802771 0.000000e+00 1812
6 TraesCS3A01G127700 chr3B 92.558 430 4 5 4970 5392 136799832 136799424 4.650000e-165 592
7 TraesCS3A01G127700 chr3B 97.608 209 5 0 1 209 127315555 127315763 5.130000e-95 359
8 TraesCS3A01G127700 chr3B 94.836 213 10 1 1 213 576968276 576968487 1.120000e-86 331
9 TraesCS3A01G127700 chr3B 95.215 209 10 0 1 209 799345890 799346098 1.120000e-86 331
10 TraesCS3A01G127700 chr3B 94.340 212 12 0 1 212 684570639 684570428 5.210000e-85 326
11 TraesCS3A01G127700 chr7A 85.158 411 59 2 3943 4352 546262187 546261778 2.320000e-113 420
12 TraesCS3A01G127700 chr7A 83.761 234 35 2 1050 1283 546263809 546263579 9.090000e-53 219
13 TraesCS3A01G127700 chr7A 81.579 190 33 2 3642 3830 546262545 546262357 7.230000e-34 156
14 TraesCS3A01G127700 chr7D 83.135 421 67 4 3934 4352 450245478 450245060 1.100000e-101 381
15 TraesCS3A01G127700 chr7D 96.244 213 8 0 1 213 152312202 152311990 3.090000e-92 350
16 TraesCS3A01G127700 chr7D 83.333 198 27 6 3636 3830 450245815 450245621 1.540000e-40 178
17 TraesCS3A01G127700 chr7B 83.135 421 67 4 3934 4352 468406089 468405671 1.100000e-101 381
18 TraesCS3A01G127700 chr7B 82.745 255 38 5 1032 1283 468407679 468407428 7.030000e-54 222
19 TraesCS3A01G127700 chr7B 83.684 190 29 2 3642 3830 468406409 468406221 1.540000e-40 178
20 TraesCS3A01G127700 chr5A 98.104 211 4 0 1 211 510561141 510561351 8.530000e-98 368
21 TraesCS3A01G127700 chr2D 96.244 213 7 1 1 212 329453118 329452906 1.110000e-91 348
22 TraesCS3A01G127700 chr6A 94.787 211 10 1 1 210 180309640 180309430 1.450000e-85 327
23 TraesCS3A01G127700 chr5D 93.981 216 12 1 1 215 355167001 355166786 5.210000e-85 326
24 TraesCS3A01G127700 chr6D 90.071 141 14 0 3636 3776 149304720 149304860 3.320000e-42 183
25 TraesCS3A01G127700 chr6B 87.234 141 18 0 3636 3776 262275174 262275314 1.550000e-35 161
26 TraesCS3A01G127700 chr2A 76.498 217 44 6 1069 1283 84944386 84944175 1.590000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G127700 chr3A 103617452 103622843 5391 True 4577.500000 5995 100.000000 1 5392 2 chr3A.!!$R1 5391
1 TraesCS3A01G127700 chr3D 86935097 86939863 4766 True 3600.500000 5269 93.399000 212 5392 2 chr3D.!!$R1 5180
2 TraesCS3A01G127700 chr3B 136799424 136804234 4810 True 2305.333333 4512 92.455667 212 5392 3 chr3B.!!$R2 5180
3 TraesCS3A01G127700 chr7A 546261778 546263809 2031 True 265.000000 420 83.499333 1050 4352 3 chr7A.!!$R1 3302
4 TraesCS3A01G127700 chr7D 450245060 450245815 755 True 279.500000 381 83.234000 3636 4352 2 chr7D.!!$R2 716
5 TraesCS3A01G127700 chr7B 468405671 468407679 2008 True 260.333333 381 83.188000 1032 4352 3 chr7B.!!$R1 3320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.035820 CCTAAGGTTAGGCGTGGCAA 60.036 55.000 2.80 0.00 43.43 4.52 F
190 191 0.040425 GTTAGGCGTGGCAAAGTGTG 60.040 55.000 0.00 0.00 0.00 3.82 F
262 263 0.179702 GGCAGCATGTCCATCAGAGA 59.820 55.000 0.00 0.00 39.31 3.10 F
568 594 0.463204 CTCGCTCCACATCACATCCT 59.537 55.000 0.00 0.00 0.00 3.24 F
917 950 0.598419 CAGCACAGCTCAACGAGTGA 60.598 55.000 3.94 0.00 36.40 3.41 F
2451 2517 0.189080 ATGTACCCATGCCATGCCAT 59.811 50.000 0.00 0.00 0.00 4.40 F
2452 2518 0.756070 TGTACCCATGCCATGCCATG 60.756 55.000 9.68 9.68 41.71 3.66 F
2457 2523 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66 F
4359 4543 1.301009 GTGATCTTCCGATCCCGCC 60.301 63.158 0.00 0.00 44.40 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1572 0.030101 CCGCCGCTCTTCTCTCTAAG 59.970 60.000 0.00 0.0 0.00 2.18 R
1516 1573 1.384989 CCCGCCGCTCTTCTCTCTAA 61.385 60.000 0.00 0.0 0.00 2.10 R
1517 1574 1.824329 CCCGCCGCTCTTCTCTCTA 60.824 63.158 0.00 0.0 0.00 2.43 R
2372 2430 1.342174 CAGCAAGGTGGCAATCAGTTT 59.658 47.619 0.00 0.0 35.83 2.66 R
2629 2700 0.253894 CATCAGCATCCACCAGACCA 59.746 55.000 0.00 0.0 0.00 4.02 R
4046 4230 0.693430 TGATGGGGATCAGCAGCTCT 60.693 55.000 0.00 0.0 36.79 4.09 R
4359 4543 1.227764 CTGGCGTCTGGGATGATGG 60.228 63.158 0.00 0.0 0.00 3.51 R
4384 4568 5.803967 GTGAATTCATCATCTTTTCACAGGC 59.196 40.000 12.12 0.0 43.44 4.85 R
5241 5497 4.335647 AGTGACAGCTTGCCCCGG 62.336 66.667 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.214696 ACTTGCCTTAGTTGAGTTGCT 57.785 42.857 0.00 0.00 0.00 3.91
21 22 3.142174 ACTTGCCTTAGTTGAGTTGCTC 58.858 45.455 0.00 0.00 0.00 4.26
22 23 2.928801 TGCCTTAGTTGAGTTGCTCA 57.071 45.000 0.00 0.00 38.87 4.26
23 24 3.207265 TGCCTTAGTTGAGTTGCTCAA 57.793 42.857 7.41 7.41 46.50 3.02
34 35 6.832520 TTGAGTTGCTCAAATTATTAGCCA 57.167 33.333 8.89 0.00 45.84 4.75
35 36 6.194796 TGAGTTGCTCAAATTATTAGCCAC 57.805 37.500 0.00 4.22 37.57 5.01
36 37 5.709631 TGAGTTGCTCAAATTATTAGCCACA 59.290 36.000 11.13 0.00 37.57 4.17
37 38 5.954335 AGTTGCTCAAATTATTAGCCACAC 58.046 37.500 11.13 4.34 35.09 3.82
38 39 5.711976 AGTTGCTCAAATTATTAGCCACACT 59.288 36.000 11.13 5.89 35.09 3.55
39 40 6.209391 AGTTGCTCAAATTATTAGCCACACTT 59.791 34.615 11.13 0.00 35.09 3.16
40 41 6.588719 TGCTCAAATTATTAGCCACACTTT 57.411 33.333 4.66 0.00 35.33 2.66
41 42 6.389091 TGCTCAAATTATTAGCCACACTTTG 58.611 36.000 4.66 0.00 35.33 2.77
49 50 3.860681 CCACACTTTGGCTTGCCT 58.139 55.556 13.18 0.00 39.07 4.75
50 51 3.034924 CCACACTTTGGCTTGCCTA 57.965 52.632 13.18 2.12 39.07 3.93
51 52 1.327303 CCACACTTTGGCTTGCCTAA 58.673 50.000 13.18 10.47 39.07 2.69
52 53 1.270550 CCACACTTTGGCTTGCCTAAG 59.729 52.381 25.92 25.92 39.07 2.18
53 54 1.270550 CACACTTTGGCTTGCCTAAGG 59.729 52.381 28.97 22.12 34.40 2.69
54 55 0.890683 CACTTTGGCTTGCCTAAGGG 59.109 55.000 28.97 24.82 34.40 3.95
55 56 0.777446 ACTTTGGCTTGCCTAAGGGA 59.223 50.000 28.97 2.46 34.40 4.20
56 57 1.146982 ACTTTGGCTTGCCTAAGGGAA 59.853 47.619 28.97 7.95 34.40 3.97
57 58 2.225369 ACTTTGGCTTGCCTAAGGGAAT 60.225 45.455 28.97 13.21 31.43 3.01
58 59 2.143876 TTGGCTTGCCTAAGGGAATC 57.856 50.000 13.18 0.00 31.43 2.52
59 60 1.298953 TGGCTTGCCTAAGGGAATCT 58.701 50.000 13.18 0.00 31.43 2.40
60 61 1.640670 TGGCTTGCCTAAGGGAATCTT 59.359 47.619 13.18 0.00 39.40 2.40
61 62 2.027385 GGCTTGCCTAAGGGAATCTTG 58.973 52.381 4.11 0.00 36.93 3.02
62 63 1.406898 GCTTGCCTAAGGGAATCTTGC 59.593 52.381 0.00 0.00 36.93 4.01
63 64 2.027385 CTTGCCTAAGGGAATCTTGCC 58.973 52.381 0.00 0.00 39.23 4.52
64 65 0.998928 TGCCTAAGGGAATCTTGCCA 59.001 50.000 3.19 0.00 41.75 4.92
65 66 1.340991 TGCCTAAGGGAATCTTGCCAC 60.341 52.381 3.19 0.00 41.75 5.01
66 67 1.340991 GCCTAAGGGAATCTTGCCACA 60.341 52.381 3.19 0.00 41.75 4.17
67 68 2.369394 CCTAAGGGAATCTTGCCACAC 58.631 52.381 3.19 0.00 41.75 3.82
68 69 2.025887 CCTAAGGGAATCTTGCCACACT 60.026 50.000 3.19 0.00 41.75 3.55
69 70 2.683211 AAGGGAATCTTGCCACACTT 57.317 45.000 3.19 0.00 41.75 3.16
70 71 2.683211 AGGGAATCTTGCCACACTTT 57.317 45.000 3.19 0.00 41.75 2.66
71 72 2.962859 AGGGAATCTTGCCACACTTTT 58.037 42.857 3.19 0.00 41.75 2.27
72 73 3.308401 AGGGAATCTTGCCACACTTTTT 58.692 40.909 3.19 0.00 41.75 1.94
73 74 3.070015 AGGGAATCTTGCCACACTTTTTG 59.930 43.478 3.19 0.00 41.75 2.44
74 75 3.181466 GGGAATCTTGCCACACTTTTTGT 60.181 43.478 0.00 0.00 39.97 2.83
75 76 8.796649 AAGGGAATCTTGCCACACTTTTTGTG 62.797 42.308 3.19 0.00 43.76 3.33
89 90 6.144854 CACTTTTTGTGTCTATGACATGTGG 58.855 40.000 1.15 0.00 44.63 4.17
90 91 5.241506 ACTTTTTGTGTCTATGACATGTGGG 59.758 40.000 1.15 0.00 44.63 4.61
91 92 3.348647 TTGTGTCTATGACATGTGGGG 57.651 47.619 1.15 0.00 44.63 4.96
92 93 2.265367 TGTGTCTATGACATGTGGGGT 58.735 47.619 1.15 0.00 44.63 4.95
93 94 2.642311 TGTGTCTATGACATGTGGGGTT 59.358 45.455 1.15 0.00 44.63 4.11
94 95 3.270877 GTGTCTATGACATGTGGGGTTC 58.729 50.000 1.15 0.00 44.63 3.62
95 96 2.909662 TGTCTATGACATGTGGGGTTCA 59.090 45.455 1.15 0.00 37.67 3.18
96 97 3.270877 GTCTATGACATGTGGGGTTCAC 58.729 50.000 1.15 0.00 38.41 3.18
97 98 3.055094 GTCTATGACATGTGGGGTTCACT 60.055 47.826 1.15 0.00 38.57 3.41
98 99 2.205022 ATGACATGTGGGGTTCACTG 57.795 50.000 1.15 0.00 46.20 3.66
99 100 0.537143 TGACATGTGGGGTTCACTGC 60.537 55.000 1.15 0.00 46.20 4.40
100 101 0.250901 GACATGTGGGGTTCACTGCT 60.251 55.000 1.15 0.00 46.20 4.24
101 102 0.250901 ACATGTGGGGTTCACTGCTC 60.251 55.000 0.00 0.00 46.20 4.26
102 103 0.250858 CATGTGGGGTTCACTGCTCA 60.251 55.000 0.00 0.00 46.20 4.26
103 104 0.700564 ATGTGGGGTTCACTGCTCAT 59.299 50.000 0.00 0.00 46.20 2.90
104 105 1.357137 TGTGGGGTTCACTGCTCATA 58.643 50.000 0.00 0.00 46.20 2.15
105 106 1.702401 TGTGGGGTTCACTGCTCATAA 59.298 47.619 0.00 0.00 46.20 1.90
106 107 2.107378 TGTGGGGTTCACTGCTCATAAA 59.893 45.455 0.00 0.00 46.20 1.40
107 108 3.153919 GTGGGGTTCACTGCTCATAAAA 58.846 45.455 0.00 0.00 42.86 1.52
108 109 3.763897 GTGGGGTTCACTGCTCATAAAAT 59.236 43.478 0.00 0.00 42.86 1.82
109 110 4.947388 GTGGGGTTCACTGCTCATAAAATA 59.053 41.667 0.00 0.00 42.86 1.40
110 111 5.417580 GTGGGGTTCACTGCTCATAAAATAA 59.582 40.000 0.00 0.00 42.86 1.40
111 112 6.096846 GTGGGGTTCACTGCTCATAAAATAAT 59.903 38.462 0.00 0.00 42.86 1.28
112 113 6.321181 TGGGGTTCACTGCTCATAAAATAATC 59.679 38.462 0.00 0.00 0.00 1.75
113 114 6.239036 GGGGTTCACTGCTCATAAAATAATCC 60.239 42.308 0.00 0.00 0.00 3.01
114 115 6.547510 GGGTTCACTGCTCATAAAATAATCCT 59.452 38.462 0.00 0.00 0.00 3.24
115 116 7.068716 GGGTTCACTGCTCATAAAATAATCCTT 59.931 37.037 0.00 0.00 0.00 3.36
116 117 7.917505 GGTTCACTGCTCATAAAATAATCCTTG 59.082 37.037 0.00 0.00 0.00 3.61
117 118 7.031226 TCACTGCTCATAAAATAATCCTTGC 57.969 36.000 0.00 0.00 0.00 4.01
118 119 6.039717 TCACTGCTCATAAAATAATCCTTGCC 59.960 38.462 0.00 0.00 0.00 4.52
119 120 6.040166 CACTGCTCATAAAATAATCCTTGCCT 59.960 38.462 0.00 0.00 0.00 4.75
120 121 6.608808 ACTGCTCATAAAATAATCCTTGCCTT 59.391 34.615 0.00 0.00 0.00 4.35
121 122 7.779798 ACTGCTCATAAAATAATCCTTGCCTTA 59.220 33.333 0.00 0.00 0.00 2.69
122 123 8.169977 TGCTCATAAAATAATCCTTGCCTTAG 57.830 34.615 0.00 0.00 0.00 2.18
123 124 7.231317 TGCTCATAAAATAATCCTTGCCTTAGG 59.769 37.037 0.00 0.00 36.59 2.69
124 125 7.231519 GCTCATAAAATAATCCTTGCCTTAGGT 59.768 37.037 0.00 0.00 36.63 3.08
125 126 8.463930 TCATAAAATAATCCTTGCCTTAGGTG 57.536 34.615 0.00 0.00 36.63 4.00
126 127 8.058847 TCATAAAATAATCCTTGCCTTAGGTGT 58.941 33.333 0.00 0.00 36.63 4.16
127 128 6.530019 AAAATAATCCTTGCCTTAGGTGTG 57.470 37.500 0.00 0.00 36.63 3.82
128 129 2.514458 AATCCTTGCCTTAGGTGTGG 57.486 50.000 0.00 0.00 36.63 4.17
135 136 2.025589 GCCTTAGGTGTGGCTAGAAC 57.974 55.000 0.00 0.00 45.26 3.01
136 137 1.555533 GCCTTAGGTGTGGCTAGAACT 59.444 52.381 0.00 0.00 45.26 3.01
137 138 2.764572 GCCTTAGGTGTGGCTAGAACTA 59.235 50.000 0.00 0.00 45.26 2.24
138 139 3.197116 GCCTTAGGTGTGGCTAGAACTAA 59.803 47.826 4.63 4.63 45.26 2.24
139 140 4.323257 GCCTTAGGTGTGGCTAGAACTAAA 60.323 45.833 6.20 0.00 45.26 1.85
140 141 5.176592 CCTTAGGTGTGGCTAGAACTAAAC 58.823 45.833 6.20 0.00 29.99 2.01
141 142 5.279809 CCTTAGGTGTGGCTAGAACTAAACA 60.280 44.000 6.20 0.00 29.99 2.83
142 143 4.004196 AGGTGTGGCTAGAACTAAACAC 57.996 45.455 0.00 10.77 37.72 3.32
144 145 4.004196 GTGTGGCTAGAACTAAACACCT 57.996 45.455 0.00 0.00 33.48 4.00
145 146 5.143376 GTGTGGCTAGAACTAAACACCTA 57.857 43.478 0.00 0.00 33.48 3.08
146 147 4.928020 GTGTGGCTAGAACTAAACACCTAC 59.072 45.833 0.00 0.00 33.48 3.18
147 148 4.020839 TGTGGCTAGAACTAAACACCTACC 60.021 45.833 0.00 0.00 0.00 3.18
148 149 4.222366 GTGGCTAGAACTAAACACCTACCT 59.778 45.833 0.00 0.00 0.00 3.08
149 150 5.420104 GTGGCTAGAACTAAACACCTACCTA 59.580 44.000 0.00 0.00 0.00 3.08
150 151 6.018469 TGGCTAGAACTAAACACCTACCTAA 58.982 40.000 0.00 0.00 0.00 2.69
151 152 6.071165 TGGCTAGAACTAAACACCTACCTAAC 60.071 42.308 0.00 0.00 0.00 2.34
152 153 6.154192 GGCTAGAACTAAACACCTACCTAACT 59.846 42.308 0.00 0.00 0.00 2.24
153 154 7.310299 GGCTAGAACTAAACACCTACCTAACTT 60.310 40.741 0.00 0.00 0.00 2.66
154 155 7.544915 GCTAGAACTAAACACCTACCTAACTTG 59.455 40.741 0.00 0.00 0.00 3.16
155 156 6.766429 AGAACTAAACACCTACCTAACTTGG 58.234 40.000 0.00 0.00 0.00 3.61
156 157 6.328410 AGAACTAAACACCTACCTAACTTGGT 59.672 38.462 0.00 0.00 43.66 3.67
157 158 6.106648 ACTAAACACCTACCTAACTTGGTC 57.893 41.667 0.00 0.00 41.22 4.02
158 159 5.603813 ACTAAACACCTACCTAACTTGGTCA 59.396 40.000 0.00 0.00 41.22 4.02
159 160 5.376756 AAACACCTACCTAACTTGGTCAA 57.623 39.130 0.00 0.00 41.22 3.18
160 161 5.376756 AACACCTACCTAACTTGGTCAAA 57.623 39.130 0.00 0.00 41.22 2.69
161 162 4.711399 ACACCTACCTAACTTGGTCAAAC 58.289 43.478 0.00 0.00 41.22 2.93
162 163 4.411212 ACACCTACCTAACTTGGTCAAACT 59.589 41.667 0.00 0.00 41.22 2.66
163 164 5.104235 ACACCTACCTAACTTGGTCAAACTT 60.104 40.000 0.00 0.00 41.22 2.66
164 165 5.238650 CACCTACCTAACTTGGTCAAACTTG 59.761 44.000 0.00 0.00 41.22 3.16
165 166 4.215613 CCTACCTAACTTGGTCAAACTTGC 59.784 45.833 0.00 0.00 41.22 4.01
166 167 2.956333 ACCTAACTTGGTCAAACTTGCC 59.044 45.455 0.00 0.00 34.86 4.52
167 168 3.222603 CCTAACTTGGTCAAACTTGCCT 58.777 45.455 5.07 0.00 0.00 4.75
168 169 4.141344 ACCTAACTTGGTCAAACTTGCCTA 60.141 41.667 5.07 0.00 34.86 3.93
169 170 4.825085 CCTAACTTGGTCAAACTTGCCTAA 59.175 41.667 5.07 0.00 0.00 2.69
170 171 4.918810 AACTTGGTCAAACTTGCCTAAG 57.081 40.909 0.00 0.00 39.86 2.18
171 172 3.222603 ACTTGGTCAAACTTGCCTAAGG 58.777 45.455 2.41 0.00 38.26 2.69
172 173 3.222603 CTTGGTCAAACTTGCCTAAGGT 58.777 45.455 0.00 0.00 38.26 3.50
173 174 3.306472 TGGTCAAACTTGCCTAAGGTT 57.694 42.857 0.00 0.00 44.49 3.50
174 175 4.440826 TGGTCAAACTTGCCTAAGGTTA 57.559 40.909 0.00 0.00 41.80 2.85
175 176 4.394729 TGGTCAAACTTGCCTAAGGTTAG 58.605 43.478 0.00 0.00 41.80 2.34
182 183 4.534401 CCTAAGGTTAGGCGTGGC 57.466 61.111 2.80 0.00 43.43 5.01
183 184 1.600107 CCTAAGGTTAGGCGTGGCA 59.400 57.895 2.80 0.00 43.43 4.92
184 185 0.035820 CCTAAGGTTAGGCGTGGCAA 60.036 55.000 2.80 0.00 43.43 4.52
185 186 1.612199 CCTAAGGTTAGGCGTGGCAAA 60.612 52.381 2.80 0.00 43.43 3.68
186 187 1.737793 CTAAGGTTAGGCGTGGCAAAG 59.262 52.381 0.00 0.00 0.00 2.77
187 188 0.179001 AAGGTTAGGCGTGGCAAAGT 60.179 50.000 0.00 0.00 0.00 2.66
188 189 0.889186 AGGTTAGGCGTGGCAAAGTG 60.889 55.000 0.00 0.00 0.00 3.16
189 190 1.170290 GGTTAGGCGTGGCAAAGTGT 61.170 55.000 0.00 0.00 0.00 3.55
190 191 0.040425 GTTAGGCGTGGCAAAGTGTG 60.040 55.000 0.00 0.00 0.00 3.82
191 192 1.169661 TTAGGCGTGGCAAAGTGTGG 61.170 55.000 0.00 0.00 0.00 4.17
199 200 3.272766 GCAAAGTGTGGCTGGAAAC 57.727 52.632 0.00 0.00 0.00 2.78
200 201 0.249447 GCAAAGTGTGGCTGGAAACC 60.249 55.000 0.00 0.00 0.00 3.27
201 202 1.110442 CAAAGTGTGGCTGGAAACCA 58.890 50.000 0.00 0.00 33.84 3.67
202 203 1.480137 CAAAGTGTGGCTGGAAACCAA 59.520 47.619 0.00 0.00 39.39 3.67
203 204 1.859302 AAGTGTGGCTGGAAACCAAA 58.141 45.000 0.00 0.00 39.39 3.28
204 205 2.086610 AGTGTGGCTGGAAACCAAAT 57.913 45.000 0.00 0.00 39.39 2.32
205 206 3.237268 AGTGTGGCTGGAAACCAAATA 57.763 42.857 0.00 0.00 39.39 1.40
206 207 3.157087 AGTGTGGCTGGAAACCAAATAG 58.843 45.455 0.00 0.00 39.39 1.73
207 208 1.892474 TGTGGCTGGAAACCAAATAGC 59.108 47.619 0.00 0.00 39.39 2.97
209 210 0.824109 GGCTGGAAACCAAATAGCCC 59.176 55.000 0.00 0.00 46.29 5.19
210 211 0.824109 GCTGGAAACCAAATAGCCCC 59.176 55.000 0.00 0.00 30.80 5.80
262 263 0.179702 GGCAGCATGTCCATCAGAGA 59.820 55.000 0.00 0.00 39.31 3.10
263 264 1.202782 GGCAGCATGTCCATCAGAGAT 60.203 52.381 0.00 0.00 39.31 2.75
264 265 2.573369 GCAGCATGTCCATCAGAGATT 58.427 47.619 0.00 0.00 39.31 2.40
265 266 2.548904 GCAGCATGTCCATCAGAGATTC 59.451 50.000 0.00 0.00 39.31 2.52
266 267 3.805207 CAGCATGTCCATCAGAGATTCA 58.195 45.455 0.00 0.00 0.00 2.57
268 269 3.710165 AGCATGTCCATCAGAGATTCAGA 59.290 43.478 0.00 0.00 0.00 3.27
269 270 4.059511 GCATGTCCATCAGAGATTCAGAG 58.940 47.826 0.00 0.00 0.00 3.35
270 271 4.633175 CATGTCCATCAGAGATTCAGAGG 58.367 47.826 0.00 0.00 0.00 3.69
271 272 3.036819 TGTCCATCAGAGATTCAGAGGG 58.963 50.000 0.00 0.00 35.54 4.30
331 351 2.901840 ACGCACCACACTGGCAAG 60.902 61.111 0.00 0.00 42.67 4.01
333 353 3.982241 GCACCACACTGGCAAGGC 61.982 66.667 0.00 0.00 42.67 4.35
404 424 1.109323 GCCAGGAGAGAGAGAGAGGC 61.109 65.000 0.00 0.00 0.00 4.70
425 445 0.535102 GAGGCTCGAGGGAGAGAGAG 60.535 65.000 15.58 0.00 43.27 3.20
426 446 1.528309 GGCTCGAGGGAGAGAGAGG 60.528 68.421 15.58 0.00 43.27 3.69
427 447 2.193536 GCTCGAGGGAGAGAGAGGC 61.194 68.421 15.58 0.00 43.27 4.70
428 448 1.531748 CTCGAGGGAGAGAGAGGCT 59.468 63.158 3.91 0.00 43.27 4.58
455 475 4.261801 AGAGAAAGGTCGAGAGAGAGAAG 58.738 47.826 0.00 0.00 43.49 2.85
456 476 3.352648 AGAAAGGTCGAGAGAGAGAAGG 58.647 50.000 0.00 0.00 43.49 3.46
568 594 0.463204 CTCGCTCCACATCACATCCT 59.537 55.000 0.00 0.00 0.00 3.24
576 602 3.703556 TCCACATCACATCCTTCTCTCTC 59.296 47.826 0.00 0.00 0.00 3.20
577 603 3.705579 CCACATCACATCCTTCTCTCTCT 59.294 47.826 0.00 0.00 0.00 3.10
578 604 4.202141 CCACATCACATCCTTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
579 605 4.646040 CACATCACATCCTTCTCTCTCTCT 59.354 45.833 0.00 0.00 0.00 3.10
580 606 4.889409 ACATCACATCCTTCTCTCTCTCTC 59.111 45.833 0.00 0.00 0.00 3.20
581 607 4.860802 TCACATCCTTCTCTCTCTCTCT 57.139 45.455 0.00 0.00 0.00 3.10
582 608 4.780815 TCACATCCTTCTCTCTCTCTCTC 58.219 47.826 0.00 0.00 0.00 3.20
583 609 4.474651 TCACATCCTTCTCTCTCTCTCTCT 59.525 45.833 0.00 0.00 0.00 3.10
584 610 4.818546 CACATCCTTCTCTCTCTCTCTCTC 59.181 50.000 0.00 0.00 0.00 3.20
585 611 4.723789 ACATCCTTCTCTCTCTCTCTCTCT 59.276 45.833 0.00 0.00 0.00 3.10
586 612 5.163258 ACATCCTTCTCTCTCTCTCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
587 613 4.624913 TCCTTCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
588 614 4.651503 TCCTTCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
589 615 4.653341 CCTTCTCTCTCTCTCTCTCTCTCT 59.347 50.000 0.00 0.00 0.00 3.10
590 616 5.221422 CCTTCTCTCTCTCTCTCTCTCTCTC 60.221 52.000 0.00 0.00 0.00 3.20
591 617 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
592 618 2.362397 TCTCTCTCTCTCTCTCTCTCGC 59.638 54.545 0.00 0.00 0.00 5.03
633 659 3.966543 CGTTGTGCCCCCTCCCTT 61.967 66.667 0.00 0.00 0.00 3.95
634 660 2.283173 GTTGTGCCCCCTCCCTTG 60.283 66.667 0.00 0.00 0.00 3.61
675 704 4.355543 AATGAAACGAAACCGATGGATG 57.644 40.909 0.00 0.00 0.00 3.51
676 705 2.080693 TGAAACGAAACCGATGGATGG 58.919 47.619 0.00 0.00 0.00 3.51
677 706 2.289756 TGAAACGAAACCGATGGATGGA 60.290 45.455 0.00 0.00 0.00 3.41
678 707 2.710096 AACGAAACCGATGGATGGAT 57.290 45.000 0.00 0.00 0.00 3.41
744 773 3.790437 ATGCTGGTCCAGAGCCCG 61.790 66.667 23.77 0.00 35.43 6.13
799 832 0.609406 TCTCCTCTCACCTCACCACG 60.609 60.000 0.00 0.00 0.00 4.94
800 833 2.219325 CTCCTCTCACCTCACCACGC 62.219 65.000 0.00 0.00 0.00 5.34
801 834 2.574018 CCTCTCACCTCACCACGCA 61.574 63.158 0.00 0.00 0.00 5.24
802 835 1.373497 CTCTCACCTCACCACGCAC 60.373 63.158 0.00 0.00 0.00 5.34
806 839 4.602259 ACCTCACCACGCACACCG 62.602 66.667 0.00 0.00 44.21 4.94
903 936 2.733593 GGACGGACGACACAGCAC 60.734 66.667 0.00 0.00 0.00 4.40
912 945 1.566563 GACACAGCACAGCTCAACG 59.433 57.895 0.00 0.00 36.40 4.10
913 946 0.875908 GACACAGCACAGCTCAACGA 60.876 55.000 0.00 0.00 36.40 3.85
914 947 0.877649 ACACAGCACAGCTCAACGAG 60.878 55.000 0.00 0.00 36.40 4.18
915 948 0.877649 CACAGCACAGCTCAACGAGT 60.878 55.000 0.00 0.00 36.40 4.18
916 949 0.877649 ACAGCACAGCTCAACGAGTG 60.878 55.000 0.00 0.00 36.40 3.51
917 950 0.598419 CAGCACAGCTCAACGAGTGA 60.598 55.000 3.94 0.00 36.40 3.41
995 1028 2.146073 AATTGAGCGGTGCTGTTGGC 62.146 55.000 0.00 0.00 39.88 4.52
1287 1320 6.426025 ACTGGAAGAAAATCTACGGTAAACAC 59.574 38.462 0.00 0.00 37.43 3.32
1288 1321 6.289834 TGGAAGAAAATCTACGGTAAACACA 58.710 36.000 0.00 0.00 0.00 3.72
1289 1322 6.938030 TGGAAGAAAATCTACGGTAAACACAT 59.062 34.615 0.00 0.00 0.00 3.21
1290 1323 7.118680 TGGAAGAAAATCTACGGTAAACACATC 59.881 37.037 0.00 0.00 0.00 3.06
1292 1325 6.469410 AGAAAATCTACGGTAAACACATCCA 58.531 36.000 0.00 0.00 0.00 3.41
1293 1326 7.110155 AGAAAATCTACGGTAAACACATCCAT 58.890 34.615 0.00 0.00 0.00 3.41
1304 1337 3.746045 ACACATCCATACATACGTCCC 57.254 47.619 0.00 0.00 0.00 4.46
1307 1340 2.632996 ACATCCATACATACGTCCCCAG 59.367 50.000 0.00 0.00 0.00 4.45
1363 1420 1.621301 CGGCACACTCTGCTTCTTCG 61.621 60.000 0.00 0.00 46.25 3.79
1364 1421 1.495069 GCACACTCTGCTTCTTCGC 59.505 57.895 0.00 0.00 43.33 4.70
1372 1429 0.870393 CTGCTTCTTCGCTTGCTTGA 59.130 50.000 0.00 0.00 0.00 3.02
1420 1477 9.862371 AACTCTTTTTCTTCTTTCTTTTTCCTC 57.138 29.630 0.00 0.00 0.00 3.71
1422 1479 7.782049 TCTTTTTCTTCTTTCTTTTTCCTCCC 58.218 34.615 0.00 0.00 0.00 4.30
1464 1521 7.088589 TGAAGAGAACAAGGAAAGAAAACAG 57.911 36.000 0.00 0.00 0.00 3.16
1465 1522 5.506686 AGAGAACAAGGAAAGAAAACAGC 57.493 39.130 0.00 0.00 0.00 4.40
1502 1559 2.591715 GGAATGGGATCGGTGGCG 60.592 66.667 0.00 0.00 0.00 5.69
1504 1561 1.595382 GAATGGGATCGGTGGCGAG 60.595 63.158 0.00 0.00 0.00 5.03
1515 1572 2.047844 TGGCGAGCAGAACAGAGC 60.048 61.111 0.00 0.00 0.00 4.09
1516 1573 2.264166 GGCGAGCAGAACAGAGCT 59.736 61.111 0.00 0.00 45.25 4.09
1517 1574 1.375268 GGCGAGCAGAACAGAGCTT 60.375 57.895 0.00 0.00 42.04 3.74
1535 1592 1.384989 TTAGAGAGAAGAGCGGCGGG 61.385 60.000 9.78 0.00 0.00 6.13
2189 2247 1.318576 CCATTCCCATTTACTCCCGC 58.681 55.000 0.00 0.00 0.00 6.13
2234 2292 2.338015 CCACATCCACTGCTGTGCC 61.338 63.158 17.57 0.00 42.54 5.01
2235 2293 1.601477 CACATCCACTGCTGTGCCA 60.601 57.895 17.57 7.09 42.54 4.92
2301 2359 4.567971 CTCCATCCTCTGCTTGCTTATAG 58.432 47.826 0.00 0.00 0.00 1.31
2302 2360 3.969976 TCCATCCTCTGCTTGCTTATAGT 59.030 43.478 0.00 0.00 0.00 2.12
2303 2361 5.147767 TCCATCCTCTGCTTGCTTATAGTA 58.852 41.667 0.00 0.00 0.00 1.82
2325 2383 7.835822 AGTAGTACTAGTCGTTCTTCAGACTA 58.164 38.462 1.87 5.39 44.93 2.59
2347 2405 2.191128 ACTCATCTTGCTTGGGTCAC 57.809 50.000 0.00 0.00 0.00 3.67
2364 2422 3.304057 GGTCACAGTTTTGCAGCTTAGTC 60.304 47.826 0.00 0.00 0.00 2.59
2372 2430 1.445871 TGCAGCTTAGTCGTCGTAGA 58.554 50.000 0.00 0.00 0.00 2.59
2406 2472 6.728200 CCACCTTGCTGTATGTATGTATTTG 58.272 40.000 0.00 0.00 0.00 2.32
2414 2480 3.969117 ATGTATGTATTTGTGCCTGCG 57.031 42.857 0.00 0.00 0.00 5.18
2451 2517 0.189080 ATGTACCCATGCCATGCCAT 59.811 50.000 0.00 0.00 0.00 4.40
2452 2518 0.756070 TGTACCCATGCCATGCCATG 60.756 55.000 9.68 9.68 41.71 3.66
2453 2519 1.833492 TACCCATGCCATGCCATGC 60.833 57.895 11.13 0.00 40.92 4.06
2454 2520 3.936203 CCCATGCCATGCCATGCC 61.936 66.667 11.13 0.00 40.92 4.40
2455 2521 3.157949 CCATGCCATGCCATGCCA 61.158 61.111 11.13 0.00 40.92 4.92
2456 2522 2.515979 CCATGCCATGCCATGCCAT 61.516 57.895 11.13 0.00 40.92 4.40
2457 2523 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66
2478 2544 2.412323 ATGCCATGCCAGCGTCTTG 61.412 57.895 0.00 0.00 0.00 3.02
2625 2696 4.443266 GTCTTCTCCCGCTGCGCT 62.443 66.667 18.00 0.00 0.00 5.92
2626 2697 4.441695 TCTTCTCCCGCTGCGCTG 62.442 66.667 18.00 10.04 0.00 5.18
2729 2801 2.595386 CTCACGGCCACTTAATTTTGC 58.405 47.619 2.24 0.00 0.00 3.68
2730 2802 2.228822 CTCACGGCCACTTAATTTTGCT 59.771 45.455 2.24 0.00 0.00 3.91
2731 2803 2.030363 TCACGGCCACTTAATTTTGCTG 60.030 45.455 2.24 0.00 0.00 4.41
3024 3096 2.283460 GCTGCCCTTGCCTCCTTT 60.283 61.111 0.00 0.00 36.33 3.11
4028 4212 4.530857 GTGGTGCTCGGCGGCTAT 62.531 66.667 18.47 0.00 0.00 2.97
4037 4221 2.828868 GGCGGCTATCACATCCCA 59.171 61.111 0.00 0.00 0.00 4.37
4046 4230 2.166130 ATCACATCCCACGCGACACA 62.166 55.000 15.93 0.00 0.00 3.72
4359 4543 1.301009 GTGATCTTCCGATCCCGCC 60.301 63.158 0.00 0.00 44.40 6.13
4384 4568 1.300465 CCCAGACGCCAGATCATCG 60.300 63.158 0.00 0.00 0.00 3.84
4404 4588 4.264253 TCGCCTGTGAAAAGATGATGAAT 58.736 39.130 0.00 0.00 0.00 2.57
4614 4799 1.818785 GCCTGCCAGCAGCTTAGAG 60.819 63.158 14.26 0.76 44.23 2.43
4615 4800 1.903294 CCTGCCAGCAGCTTAGAGA 59.097 57.895 14.26 0.00 44.23 3.10
4683 4868 4.200092 GTGTCTCCCAAGTTTTTCTGTCT 58.800 43.478 0.00 0.00 0.00 3.41
4897 5084 1.642037 CCACAGTGCCGCTCTGATTG 61.642 60.000 25.27 15.19 36.81 2.67
5154 5409 4.754667 TGCGCCTGCTCTGCTCTG 62.755 66.667 4.18 0.00 43.34 3.35
5214 5469 2.069273 CCTCCTCTGTAAACAACGCAG 58.931 52.381 0.00 0.00 0.00 5.18
5241 5497 2.202650 ACATGTACCGTACGGCGC 60.203 61.111 33.62 25.07 39.71 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.142174 GAGCAACTCAACTAAGGCAAGT 58.858 45.455 0.00 0.00 0.00 3.16
1 2 3.141398 TGAGCAACTCAACTAAGGCAAG 58.859 45.455 0.00 0.00 37.57 4.01
2 3 3.207265 TGAGCAACTCAACTAAGGCAA 57.793 42.857 0.00 0.00 37.57 4.52
3 4 2.928801 TGAGCAACTCAACTAAGGCA 57.071 45.000 0.00 0.00 37.57 4.75
11 12 6.208402 TGTGGCTAATAATTTGAGCAACTCAA 59.792 34.615 5.94 5.94 46.93 3.02
13 14 6.030228 GTGTGGCTAATAATTTGAGCAACTC 58.970 40.000 12.22 7.13 40.27 3.01
14 15 5.711976 AGTGTGGCTAATAATTTGAGCAACT 59.288 36.000 12.22 7.91 40.27 3.16
15 16 5.954335 AGTGTGGCTAATAATTTGAGCAAC 58.046 37.500 6.53 6.53 40.06 4.17
16 17 6.588719 AAGTGTGGCTAATAATTTGAGCAA 57.411 33.333 7.85 0.00 37.98 3.91
17 18 6.389091 CAAAGTGTGGCTAATAATTTGAGCA 58.611 36.000 7.85 0.00 37.98 4.26
18 19 5.807011 CCAAAGTGTGGCTAATAATTTGAGC 59.193 40.000 9.14 0.00 41.72 4.26
33 34 1.270550 CCTTAGGCAAGCCAAAGTGTG 59.729 52.381 14.40 0.00 38.92 3.82
34 35 1.620822 CCTTAGGCAAGCCAAAGTGT 58.379 50.000 14.40 0.00 38.92 3.55
35 36 0.890683 CCCTTAGGCAAGCCAAAGTG 59.109 55.000 14.40 0.00 38.92 3.16
36 37 0.777446 TCCCTTAGGCAAGCCAAAGT 59.223 50.000 14.40 0.00 38.92 2.66
37 38 1.923356 TTCCCTTAGGCAAGCCAAAG 58.077 50.000 14.40 0.00 38.92 2.77
38 39 2.042979 AGATTCCCTTAGGCAAGCCAAA 59.957 45.455 14.40 0.00 38.92 3.28
39 40 1.640670 AGATTCCCTTAGGCAAGCCAA 59.359 47.619 14.40 4.98 38.92 4.52
40 41 1.298953 AGATTCCCTTAGGCAAGCCA 58.701 50.000 14.40 0.00 38.92 4.75
41 42 2.027385 CAAGATTCCCTTAGGCAAGCC 58.973 52.381 2.02 2.02 32.86 4.35
42 43 1.406898 GCAAGATTCCCTTAGGCAAGC 59.593 52.381 0.00 0.00 32.86 4.01
43 44 2.027385 GGCAAGATTCCCTTAGGCAAG 58.973 52.381 0.00 0.00 32.86 4.01
44 45 1.357420 TGGCAAGATTCCCTTAGGCAA 59.643 47.619 0.00 0.00 36.41 4.52
45 46 0.998928 TGGCAAGATTCCCTTAGGCA 59.001 50.000 0.00 0.00 36.71 4.75
46 47 1.340991 TGTGGCAAGATTCCCTTAGGC 60.341 52.381 0.00 0.00 32.86 3.93
47 48 2.025887 AGTGTGGCAAGATTCCCTTAGG 60.026 50.000 0.00 0.00 32.86 2.69
48 49 3.356529 AGTGTGGCAAGATTCCCTTAG 57.643 47.619 0.00 0.00 32.86 2.18
49 50 3.806949 AAGTGTGGCAAGATTCCCTTA 57.193 42.857 0.00 0.00 32.86 2.69
50 51 2.683211 AAGTGTGGCAAGATTCCCTT 57.317 45.000 0.00 0.00 34.91 3.95
51 52 2.683211 AAAGTGTGGCAAGATTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
52 53 3.181466 ACAAAAAGTGTGGCAAGATTCCC 60.181 43.478 0.00 0.00 39.72 3.97
53 54 4.058721 ACAAAAAGTGTGGCAAGATTCC 57.941 40.909 0.00 0.00 39.72 3.01
66 67 5.241506 CCCACATGTCATAGACACAAAAAGT 59.758 40.000 0.00 0.00 45.65 2.66
67 68 5.335897 CCCCACATGTCATAGACACAAAAAG 60.336 44.000 0.00 0.00 45.65 2.27
68 69 4.522405 CCCCACATGTCATAGACACAAAAA 59.478 41.667 0.00 0.00 45.65 1.94
69 70 4.078537 CCCCACATGTCATAGACACAAAA 58.921 43.478 0.00 0.00 45.65 2.44
70 71 3.073798 ACCCCACATGTCATAGACACAAA 59.926 43.478 0.00 0.00 45.65 2.83
71 72 2.642311 ACCCCACATGTCATAGACACAA 59.358 45.455 0.00 0.00 45.65 3.33
72 73 2.265367 ACCCCACATGTCATAGACACA 58.735 47.619 0.00 0.00 45.65 3.72
73 74 3.270877 GAACCCCACATGTCATAGACAC 58.729 50.000 0.00 0.00 45.65 3.67
74 75 2.909662 TGAACCCCACATGTCATAGACA 59.090 45.455 0.00 1.95 46.90 3.41
75 76 3.270877 GTGAACCCCACATGTCATAGAC 58.729 50.000 0.00 0.00 45.03 2.59
76 77 3.627395 GTGAACCCCACATGTCATAGA 57.373 47.619 0.00 0.00 45.03 1.98
86 87 2.489938 TTATGAGCAGTGAACCCCAC 57.510 50.000 0.00 0.00 46.03 4.61
87 88 3.517296 TTTTATGAGCAGTGAACCCCA 57.483 42.857 0.00 0.00 0.00 4.96
88 89 6.239036 GGATTATTTTATGAGCAGTGAACCCC 60.239 42.308 0.00 0.00 0.00 4.95
89 90 6.547510 AGGATTATTTTATGAGCAGTGAACCC 59.452 38.462 0.00 0.00 0.00 4.11
90 91 7.573968 AGGATTATTTTATGAGCAGTGAACC 57.426 36.000 0.00 0.00 0.00 3.62
91 92 7.433425 GCAAGGATTATTTTATGAGCAGTGAAC 59.567 37.037 0.00 0.00 0.00 3.18
92 93 7.416664 GGCAAGGATTATTTTATGAGCAGTGAA 60.417 37.037 0.00 0.00 0.00 3.18
93 94 6.039717 GGCAAGGATTATTTTATGAGCAGTGA 59.960 38.462 0.00 0.00 0.00 3.41
94 95 6.040166 AGGCAAGGATTATTTTATGAGCAGTG 59.960 38.462 0.00 0.00 0.00 3.66
95 96 6.131961 AGGCAAGGATTATTTTATGAGCAGT 58.868 36.000 0.00 0.00 0.00 4.40
96 97 6.645790 AGGCAAGGATTATTTTATGAGCAG 57.354 37.500 0.00 0.00 0.00 4.24
97 98 7.231317 CCTAAGGCAAGGATTATTTTATGAGCA 59.769 37.037 0.00 0.00 39.15 4.26
98 99 7.231519 ACCTAAGGCAAGGATTATTTTATGAGC 59.768 37.037 12.37 0.00 39.15 4.26
99 100 8.571336 CACCTAAGGCAAGGATTATTTTATGAG 58.429 37.037 12.37 0.00 39.15 2.90
100 101 8.058847 ACACCTAAGGCAAGGATTATTTTATGA 58.941 33.333 12.37 0.00 39.15 2.15
101 102 8.137437 CACACCTAAGGCAAGGATTATTTTATG 58.863 37.037 12.37 0.61 39.15 1.90
102 103 7.287696 CCACACCTAAGGCAAGGATTATTTTAT 59.712 37.037 12.37 0.00 39.15 1.40
103 104 6.605594 CCACACCTAAGGCAAGGATTATTTTA 59.394 38.462 12.37 0.00 39.15 1.52
104 105 5.422012 CCACACCTAAGGCAAGGATTATTTT 59.578 40.000 12.37 0.00 39.15 1.82
105 106 4.956075 CCACACCTAAGGCAAGGATTATTT 59.044 41.667 12.37 0.00 39.15 1.40
106 107 4.536765 CCACACCTAAGGCAAGGATTATT 58.463 43.478 12.37 0.00 39.15 1.40
107 108 4.170468 CCACACCTAAGGCAAGGATTAT 57.830 45.455 12.37 0.00 39.15 1.28
108 109 3.644966 CCACACCTAAGGCAAGGATTA 57.355 47.619 12.37 0.00 39.15 1.75
109 110 2.514458 CCACACCTAAGGCAAGGATT 57.486 50.000 12.37 0.00 39.15 3.01
117 118 5.176592 GTTTAGTTCTAGCCACACCTAAGG 58.823 45.833 0.00 0.00 0.00 2.69
118 119 5.638234 GTGTTTAGTTCTAGCCACACCTAAG 59.362 44.000 0.00 0.00 0.00 2.18
119 120 5.544650 GTGTTTAGTTCTAGCCACACCTAA 58.455 41.667 0.00 0.00 0.00 2.69
120 121 5.143376 GTGTTTAGTTCTAGCCACACCTA 57.857 43.478 0.00 0.00 0.00 3.08
121 122 4.004196 GTGTTTAGTTCTAGCCACACCT 57.996 45.455 0.00 0.00 0.00 4.00
122 123 3.072211 GGTGTTTAGTTCTAGCCACACC 58.928 50.000 15.60 15.60 45.45 4.16
123 124 4.004196 AGGTGTTTAGTTCTAGCCACAC 57.996 45.455 10.67 0.00 34.93 3.82
124 125 4.020839 GGTAGGTGTTTAGTTCTAGCCACA 60.021 45.833 10.67 0.00 0.00 4.17
125 126 4.222366 AGGTAGGTGTTTAGTTCTAGCCAC 59.778 45.833 0.00 0.00 32.51 5.01
126 127 4.422984 AGGTAGGTGTTTAGTTCTAGCCA 58.577 43.478 0.00 0.00 32.51 4.75
127 128 6.154192 AGTTAGGTAGGTGTTTAGTTCTAGCC 59.846 42.308 0.00 0.00 32.51 3.93
128 129 7.167924 AGTTAGGTAGGTGTTTAGTTCTAGC 57.832 40.000 0.00 0.00 0.00 3.42
129 130 8.033626 CCAAGTTAGGTAGGTGTTTAGTTCTAG 58.966 40.741 0.00 0.00 0.00 2.43
130 131 7.510343 ACCAAGTTAGGTAGGTGTTTAGTTCTA 59.490 37.037 0.00 0.00 40.98 2.10
131 132 6.328410 ACCAAGTTAGGTAGGTGTTTAGTTCT 59.672 38.462 0.00 0.00 40.98 3.01
132 133 6.528321 ACCAAGTTAGGTAGGTGTTTAGTTC 58.472 40.000 0.00 0.00 40.98 3.01
133 134 6.100134 TGACCAAGTTAGGTAGGTGTTTAGTT 59.900 38.462 0.00 0.00 43.38 2.24
134 135 5.603813 TGACCAAGTTAGGTAGGTGTTTAGT 59.396 40.000 0.00 0.00 43.38 2.24
135 136 6.105397 TGACCAAGTTAGGTAGGTGTTTAG 57.895 41.667 0.00 0.00 43.38 1.85
136 137 6.497624 TTGACCAAGTTAGGTAGGTGTTTA 57.502 37.500 0.00 0.00 43.38 2.01
137 138 5.376756 TTGACCAAGTTAGGTAGGTGTTT 57.623 39.130 0.00 0.00 43.38 2.83
138 139 5.104235 AGTTTGACCAAGTTAGGTAGGTGTT 60.104 40.000 0.00 0.00 43.38 3.32
139 140 4.411212 AGTTTGACCAAGTTAGGTAGGTGT 59.589 41.667 0.00 0.00 43.38 4.16
140 141 4.969484 AGTTTGACCAAGTTAGGTAGGTG 58.031 43.478 0.00 0.00 43.38 4.00
141 142 5.374071 CAAGTTTGACCAAGTTAGGTAGGT 58.626 41.667 0.00 0.00 43.38 3.08
142 143 4.215613 GCAAGTTTGACCAAGTTAGGTAGG 59.784 45.833 0.00 0.00 43.38 3.18
143 144 4.215613 GGCAAGTTTGACCAAGTTAGGTAG 59.784 45.833 0.00 0.00 43.38 3.18
144 145 4.139038 GGCAAGTTTGACCAAGTTAGGTA 58.861 43.478 0.00 0.00 43.38 3.08
145 146 2.956333 GGCAAGTTTGACCAAGTTAGGT 59.044 45.455 0.00 0.00 46.82 3.08
146 147 3.222603 AGGCAAGTTTGACCAAGTTAGG 58.777 45.455 0.00 0.00 36.67 2.69
147 148 5.048713 CCTTAGGCAAGTTTGACCAAGTTAG 60.049 44.000 5.40 0.00 36.67 2.34
148 149 4.825085 CCTTAGGCAAGTTTGACCAAGTTA 59.175 41.667 5.40 0.00 36.67 2.24
149 150 3.636764 CCTTAGGCAAGTTTGACCAAGTT 59.363 43.478 5.40 0.00 36.67 2.66
150 151 3.222603 CCTTAGGCAAGTTTGACCAAGT 58.777 45.455 5.40 0.00 36.67 3.16
151 152 3.222603 ACCTTAGGCAAGTTTGACCAAG 58.777 45.455 0.00 0.00 36.67 3.61
152 153 3.306472 ACCTTAGGCAAGTTTGACCAA 57.694 42.857 0.00 0.00 36.67 3.67
153 154 3.306472 AACCTTAGGCAAGTTTGACCA 57.694 42.857 0.00 0.00 36.67 4.02
154 155 3.756963 CCTAACCTTAGGCAAGTTTGACC 59.243 47.826 0.00 0.00 43.43 4.02
166 167 1.737793 CTTTGCCACGCCTAACCTTAG 59.262 52.381 0.00 0.00 0.00 2.18
167 168 1.072648 ACTTTGCCACGCCTAACCTTA 59.927 47.619 0.00 0.00 0.00 2.69
168 169 0.179001 ACTTTGCCACGCCTAACCTT 60.179 50.000 0.00 0.00 0.00 3.50
169 170 0.889186 CACTTTGCCACGCCTAACCT 60.889 55.000 0.00 0.00 0.00 3.50
170 171 1.170290 ACACTTTGCCACGCCTAACC 61.170 55.000 0.00 0.00 0.00 2.85
171 172 0.040425 CACACTTTGCCACGCCTAAC 60.040 55.000 0.00 0.00 0.00 2.34
172 173 1.169661 CCACACTTTGCCACGCCTAA 61.170 55.000 0.00 0.00 0.00 2.69
173 174 1.599518 CCACACTTTGCCACGCCTA 60.600 57.895 0.00 0.00 0.00 3.93
174 175 2.906897 CCACACTTTGCCACGCCT 60.907 61.111 0.00 0.00 0.00 5.52
175 176 4.645921 GCCACACTTTGCCACGCC 62.646 66.667 0.00 0.00 0.00 5.68
176 177 3.595758 AGCCACACTTTGCCACGC 61.596 61.111 0.00 0.00 0.00 5.34
177 178 2.332514 CAGCCACACTTTGCCACG 59.667 61.111 0.00 0.00 0.00 4.94
178 179 1.391157 TTCCAGCCACACTTTGCCAC 61.391 55.000 0.00 0.00 0.00 5.01
179 180 0.685785 TTTCCAGCCACACTTTGCCA 60.686 50.000 0.00 0.00 0.00 4.92
180 181 0.249447 GTTTCCAGCCACACTTTGCC 60.249 55.000 0.00 0.00 0.00 4.52
181 182 0.249447 GGTTTCCAGCCACACTTTGC 60.249 55.000 0.00 0.00 0.00 3.68
182 183 1.110442 TGGTTTCCAGCCACACTTTG 58.890 50.000 0.00 0.00 0.00 2.77
183 184 1.859302 TTGGTTTCCAGCCACACTTT 58.141 45.000 0.00 0.00 35.46 2.66
184 185 1.859302 TTTGGTTTCCAGCCACACTT 58.141 45.000 0.00 0.00 35.46 3.16
185 186 2.086610 ATTTGGTTTCCAGCCACACT 57.913 45.000 0.00 0.00 35.46 3.55
186 187 2.352715 GCTATTTGGTTTCCAGCCACAC 60.353 50.000 0.00 0.00 35.46 3.82
187 188 1.892474 GCTATTTGGTTTCCAGCCACA 59.108 47.619 0.00 0.00 35.46 4.17
188 189 1.204704 GGCTATTTGGTTTCCAGCCAC 59.795 52.381 6.05 0.00 39.82 5.01
189 190 1.555967 GGCTATTTGGTTTCCAGCCA 58.444 50.000 6.05 0.00 39.82 4.75
190 191 0.824109 GGGCTATTTGGTTTCCAGCC 59.176 55.000 2.26 2.26 39.48 4.85
191 192 0.824109 GGGGCTATTTGGTTTCCAGC 59.176 55.000 0.00 0.00 33.81 4.85
192 193 2.532250 AGGGGCTATTTGGTTTCCAG 57.468 50.000 0.00 0.00 33.81 3.86
193 194 3.194620 TCTAGGGGCTATTTGGTTTCCA 58.805 45.455 0.00 0.00 0.00 3.53
194 195 3.945640 TCTAGGGGCTATTTGGTTTCC 57.054 47.619 0.00 0.00 0.00 3.13
195 196 4.793201 ACATCTAGGGGCTATTTGGTTTC 58.207 43.478 0.00 0.00 0.00 2.78
196 197 4.229582 TGACATCTAGGGGCTATTTGGTTT 59.770 41.667 0.00 0.00 0.00 3.27
197 198 3.785887 TGACATCTAGGGGCTATTTGGTT 59.214 43.478 0.00 0.00 0.00 3.67
198 199 3.392616 CTGACATCTAGGGGCTATTTGGT 59.607 47.826 0.00 0.00 0.00 3.67
199 200 3.392616 ACTGACATCTAGGGGCTATTTGG 59.607 47.826 0.00 0.00 0.00 3.28
200 201 4.696479 ACTGACATCTAGGGGCTATTTG 57.304 45.455 0.00 0.00 0.00 2.32
201 202 4.281182 CGTACTGACATCTAGGGGCTATTT 59.719 45.833 0.00 0.00 0.00 1.40
202 203 3.827302 CGTACTGACATCTAGGGGCTATT 59.173 47.826 0.00 0.00 0.00 1.73
203 204 3.181431 ACGTACTGACATCTAGGGGCTAT 60.181 47.826 0.00 0.00 0.00 2.97
204 205 2.174210 ACGTACTGACATCTAGGGGCTA 59.826 50.000 0.00 0.00 0.00 3.93
205 206 1.063867 ACGTACTGACATCTAGGGGCT 60.064 52.381 0.00 0.00 0.00 5.19
206 207 1.067212 CACGTACTGACATCTAGGGGC 59.933 57.143 0.00 0.00 0.00 5.80
207 208 2.376109 ACACGTACTGACATCTAGGGG 58.624 52.381 0.00 0.00 0.00 4.79
208 209 4.036498 CCTTACACGTACTGACATCTAGGG 59.964 50.000 0.00 0.00 0.00 3.53
209 210 4.880120 TCCTTACACGTACTGACATCTAGG 59.120 45.833 0.00 0.00 0.00 3.02
210 211 5.502058 CGTCCTTACACGTACTGACATCTAG 60.502 48.000 0.00 0.00 34.95 2.43
262 263 1.319799 CCTCCCCTCCCCTCTGAAT 59.680 63.158 0.00 0.00 0.00 2.57
263 264 2.787866 CCTCCCCTCCCCTCTGAA 59.212 66.667 0.00 0.00 0.00 3.02
264 265 3.368501 CCCTCCCCTCCCCTCTGA 61.369 72.222 0.00 0.00 0.00 3.27
265 266 3.700350 ACCCTCCCCTCCCCTCTG 61.700 72.222 0.00 0.00 0.00 3.35
266 267 3.700350 CACCCTCCCCTCCCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
270 271 4.741239 TCAGCACCCTCCCCTCCC 62.741 72.222 0.00 0.00 0.00 4.30
271 272 3.086600 CTCAGCACCCTCCCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
333 353 4.093952 CACCGCTCCGCTGCAAAG 62.094 66.667 0.00 0.00 0.00 2.77
343 363 1.880027 ACTGTTCCATTTTCACCGCTC 59.120 47.619 0.00 0.00 0.00 5.03
404 424 0.819259 CTCTCTCCCTCGAGCCTCAG 60.819 65.000 6.99 0.02 35.94 3.35
425 445 0.174617 CGACCTTTCTCTCTCCAGCC 59.825 60.000 0.00 0.00 0.00 4.85
426 446 1.134175 CTCGACCTTTCTCTCTCCAGC 59.866 57.143 0.00 0.00 0.00 4.85
427 447 2.682856 CTCTCGACCTTTCTCTCTCCAG 59.317 54.545 0.00 0.00 0.00 3.86
428 448 2.306219 TCTCTCGACCTTTCTCTCTCCA 59.694 50.000 0.00 0.00 0.00 3.86
456 476 1.532078 TTTCGTTTTGGCCTCCCCC 60.532 57.895 3.32 0.00 0.00 5.40
568 594 4.339530 CGAGAGAGAGAGAGAGAGAGAGAA 59.660 50.000 0.00 0.00 0.00 2.87
576 602 2.748605 GAGAGCGAGAGAGAGAGAGAG 58.251 57.143 0.00 0.00 0.00 3.20
577 603 1.067060 CGAGAGCGAGAGAGAGAGAGA 59.933 57.143 0.00 0.00 40.82 3.10
578 604 1.491670 CGAGAGCGAGAGAGAGAGAG 58.508 60.000 0.00 0.00 40.82 3.20
579 605 3.659850 CGAGAGCGAGAGAGAGAGA 57.340 57.895 0.00 0.00 40.82 3.10
661 690 1.512926 GGATCCATCCATCGGTTTCG 58.487 55.000 6.95 0.00 46.38 3.46
675 704 0.179084 TGAAAGCGTCGGATGGATCC 60.179 55.000 4.20 4.20 43.65 3.36
676 705 1.212616 CTGAAAGCGTCGGATGGATC 58.787 55.000 0.00 0.00 34.07 3.36
677 706 3.369381 CTGAAAGCGTCGGATGGAT 57.631 52.632 0.00 0.00 34.07 3.41
678 707 4.910956 CTGAAAGCGTCGGATGGA 57.089 55.556 0.00 0.00 34.07 3.41
699 728 9.920133 TGTGTAGTAGTAGTAGGATTAGTATCG 57.080 37.037 0.00 0.00 0.00 2.92
744 773 3.202373 GGGTGGATTTATATAGGGGAGCC 59.798 52.174 0.00 0.00 0.00 4.70
834 867 1.287739 AGAGAGGAACAGAGGAGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
835 868 2.654863 GAGAGAGGAACAGAGGAGGAG 58.345 57.143 0.00 0.00 0.00 3.69
836 869 1.286553 GGAGAGAGGAACAGAGGAGGA 59.713 57.143 0.00 0.00 0.00 3.71
912 945 2.881513 TCACTCACTCACTCACTCACTC 59.118 50.000 0.00 0.00 0.00 3.51
913 946 2.884012 CTCACTCACTCACTCACTCACT 59.116 50.000 0.00 0.00 0.00 3.41
914 947 2.621055 ACTCACTCACTCACTCACTCAC 59.379 50.000 0.00 0.00 0.00 3.51
915 948 2.620585 CACTCACTCACTCACTCACTCA 59.379 50.000 0.00 0.00 0.00 3.41
916 949 2.881513 TCACTCACTCACTCACTCACTC 59.118 50.000 0.00 0.00 0.00 3.51
917 950 2.884012 CTCACTCACTCACTCACTCACT 59.116 50.000 0.00 0.00 0.00 3.41
918 951 2.030363 CCTCACTCACTCACTCACTCAC 60.030 54.545 0.00 0.00 0.00 3.51
919 952 2.234143 CCTCACTCACTCACTCACTCA 58.766 52.381 0.00 0.00 0.00 3.41
920 953 1.067915 GCCTCACTCACTCACTCACTC 60.068 57.143 0.00 0.00 0.00 3.51
921 954 0.965439 GCCTCACTCACTCACTCACT 59.035 55.000 0.00 0.00 0.00 3.41
922 955 0.387878 CGCCTCACTCACTCACTCAC 60.388 60.000 0.00 0.00 0.00 3.51
923 956 0.537371 TCGCCTCACTCACTCACTCA 60.537 55.000 0.00 0.00 0.00 3.41
958 991 9.794685 CGCTCAATTCTATCTATGTATGTATGT 57.205 33.333 0.00 0.00 0.00 2.29
959 992 9.242477 CCGCTCAATTCTATCTATGTATGTATG 57.758 37.037 0.00 0.00 0.00 2.39
971 1004 2.555199 ACAGCACCGCTCAATTCTATC 58.445 47.619 0.00 0.00 36.40 2.08
995 1028 4.552365 ACCAGCCCATCATCCGCG 62.552 66.667 0.00 0.00 0.00 6.46
1287 1320 2.612972 GCTGGGGACGTATGTATGGATG 60.613 54.545 0.00 0.00 0.00 3.51
1288 1321 1.623811 GCTGGGGACGTATGTATGGAT 59.376 52.381 0.00 0.00 0.00 3.41
1289 1322 1.045407 GCTGGGGACGTATGTATGGA 58.955 55.000 0.00 0.00 0.00 3.41
1290 1323 0.034896 GGCTGGGGACGTATGTATGG 59.965 60.000 0.00 0.00 0.00 2.74
1292 1325 1.729586 ATGGCTGGGGACGTATGTAT 58.270 50.000 0.00 0.00 0.00 2.29
1293 1326 1.502690 AATGGCTGGGGACGTATGTA 58.497 50.000 0.00 0.00 0.00 2.29
1363 1420 3.436496 GAGATCAAGCAATCAAGCAAGC 58.564 45.455 0.00 0.00 36.85 4.01
1364 1421 3.181489 GGGAGATCAAGCAATCAAGCAAG 60.181 47.826 0.00 0.00 36.85 4.01
1372 1429 2.290260 TGTCGTTGGGAGATCAAGCAAT 60.290 45.455 0.00 0.00 0.00 3.56
1420 1477 6.835488 TCTTCATTCATCAGATTAAAAGGGGG 59.165 38.462 0.00 0.00 0.00 5.40
1422 1479 8.743085 TCTCTTCATTCATCAGATTAAAAGGG 57.257 34.615 0.00 0.00 0.00 3.95
1464 1521 4.082787 TCCCTTGATTTTCGTTCTGAATGC 60.083 41.667 4.72 0.00 36.22 3.56
1465 1522 5.627499 TCCCTTGATTTTCGTTCTGAATG 57.373 39.130 3.17 3.17 36.22 2.67
1502 1559 3.694072 TCTCTCTAAGCTCTGTTCTGCTC 59.306 47.826 0.00 0.00 38.75 4.26
1504 1561 4.157656 TCTTCTCTCTAAGCTCTGTTCTGC 59.842 45.833 0.00 0.00 0.00 4.26
1515 1572 0.030101 CCGCCGCTCTTCTCTCTAAG 59.970 60.000 0.00 0.00 0.00 2.18
1516 1573 1.384989 CCCGCCGCTCTTCTCTCTAA 61.385 60.000 0.00 0.00 0.00 2.10
1517 1574 1.824329 CCCGCCGCTCTTCTCTCTA 60.824 63.158 0.00 0.00 0.00 2.43
2301 2359 6.966435 AGTCTGAAGAACGACTAGTACTAC 57.034 41.667 0.00 0.00 38.63 2.73
2303 2361 9.097257 GTTATAGTCTGAAGAACGACTAGTACT 57.903 37.037 0.00 0.00 43.60 2.73
2325 2383 4.263462 TGTGACCCAAGCAAGATGAGTTAT 60.263 41.667 0.00 0.00 0.00 1.89
2347 2405 2.410262 CGACGACTAAGCTGCAAAACTG 60.410 50.000 1.02 0.00 0.00 3.16
2364 2422 2.092211 GTGGCAATCAGTTTCTACGACG 59.908 50.000 0.00 0.00 0.00 5.12
2372 2430 1.342174 CAGCAAGGTGGCAATCAGTTT 59.658 47.619 0.00 0.00 35.83 2.66
2406 2472 3.249080 TGTAAGTAGAAAAACGCAGGCAC 59.751 43.478 0.00 0.00 0.00 5.01
2414 2480 9.439500 TGGGTACATACATGTAAGTAGAAAAAC 57.561 33.333 18.63 10.14 44.11 2.43
2478 2544 3.357079 CGCACAAGGCACCAGGAC 61.357 66.667 0.00 0.00 45.17 3.85
2623 2694 2.976490 ATCCACCAGACCAGGCAGC 61.976 63.158 0.00 0.00 0.00 5.25
2624 2695 1.077930 CATCCACCAGACCAGGCAG 60.078 63.158 0.00 0.00 0.00 4.85
2625 2696 3.080641 CATCCACCAGACCAGGCA 58.919 61.111 0.00 0.00 0.00 4.75
2626 2697 2.439156 GCATCCACCAGACCAGGC 60.439 66.667 0.00 0.00 0.00 4.85
2627 2698 1.077930 CAGCATCCACCAGACCAGG 60.078 63.158 0.00 0.00 0.00 4.45
2628 2699 0.545171 ATCAGCATCCACCAGACCAG 59.455 55.000 0.00 0.00 0.00 4.00
2629 2700 0.253894 CATCAGCATCCACCAGACCA 59.746 55.000 0.00 0.00 0.00 4.02
2630 2701 0.254178 ACATCAGCATCCACCAGACC 59.746 55.000 0.00 0.00 0.00 3.85
2729 2801 3.432588 GCCTGTGAGCAGCAGCAG 61.433 66.667 3.17 0.00 45.49 4.24
2730 2802 3.896356 GAGCCTGTGAGCAGCAGCA 62.896 63.158 3.17 0.00 45.49 4.41
2731 2803 3.126225 GAGCCTGTGAGCAGCAGC 61.126 66.667 0.00 0.00 41.26 5.25
3024 3096 1.454572 GCATCACCGCCATAATGCCA 61.455 55.000 0.00 0.00 38.82 4.92
3366 3443 6.551385 ACTTAAAAATCAGTGAGCACTCTG 57.449 37.500 6.85 6.85 40.20 3.35
3372 3449 9.443283 CTATGCATTACTTAAAAATCAGTGAGC 57.557 33.333 3.54 0.00 0.00 4.26
3523 3625 1.812922 GAGCCTCTCGTCGTCGGTA 60.813 63.158 1.55 0.00 37.69 4.02
3754 3880 1.587043 CGCAGACTTCGAGGACCTCA 61.587 60.000 21.49 5.96 0.00 3.86
4028 4212 2.048597 GTGTCGCGTGGGATGTGA 60.049 61.111 5.77 0.00 0.00 3.58
4037 4221 3.983494 AGCAGCTCTGTGTCGCGT 61.983 61.111 5.77 0.00 0.00 6.01
4046 4230 0.693430 TGATGGGGATCAGCAGCTCT 60.693 55.000 0.00 0.00 36.79 4.09
4359 4543 1.227764 CTGGCGTCTGGGATGATGG 60.228 63.158 0.00 0.00 0.00 3.51
4384 4568 5.803967 GTGAATTCATCATCTTTTCACAGGC 59.196 40.000 12.12 0.00 43.44 4.85
4614 4799 8.735692 ACACTGTTACTACCTCTCTACTAATC 57.264 38.462 0.00 0.00 0.00 1.75
4615 4800 9.835389 CTACACTGTTACTACCTCTCTACTAAT 57.165 37.037 0.00 0.00 0.00 1.73
4660 4845 3.288092 ACAGAAAAACTTGGGAGACACC 58.712 45.455 0.00 0.00 38.08 4.16
4683 4868 4.586841 AGAAACCATCATCAACCCGAAAAA 59.413 37.500 0.00 0.00 0.00 1.94
4888 5075 3.332919 TGACAGAGAAAGCAATCAGAGC 58.667 45.455 0.00 0.00 0.00 4.09
4897 5084 3.817647 ACCACAAGAATGACAGAGAAAGC 59.182 43.478 0.00 0.00 0.00 3.51
5113 5368 3.225104 CCACCATTGCTATGCCTATGTT 58.775 45.455 2.27 0.00 0.00 2.71
5114 5369 2.175499 ACCACCATTGCTATGCCTATGT 59.825 45.455 2.27 0.00 0.00 2.29
5115 5370 2.555325 CACCACCATTGCTATGCCTATG 59.445 50.000 2.27 0.00 0.00 2.23
5116 5371 2.175499 ACACCACCATTGCTATGCCTAT 59.825 45.455 2.27 0.00 0.00 2.57
5117 5372 1.563879 ACACCACCATTGCTATGCCTA 59.436 47.619 2.27 0.00 0.00 3.93
5118 5373 0.332632 ACACCACCATTGCTATGCCT 59.667 50.000 2.27 0.00 0.00 4.75
5241 5497 4.335647 AGTGACAGCTTGCCCCGG 62.336 66.667 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.