Multiple sequence alignment - TraesCS3A01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G127300 chr3A 100.000 3410 0 0 1 3410 102625904 102622495 0.000000e+00 6298.0
1 TraesCS3A01G127300 chr3B 95.960 1782 59 8 712 2486 136450635 136448860 0.000000e+00 2880.0
2 TraesCS3A01G127300 chr3B 90.355 394 38 0 1 394 136451132 136450739 5.040000e-143 518.0
3 TraesCS3A01G127300 chr3B 81.370 467 60 14 2967 3410 136448167 136447705 4.190000e-94 355.0
4 TraesCS3A01G127300 chr3B 81.068 206 20 8 2663 2868 136448400 136448214 2.740000e-31 147.0
5 TraesCS3A01G127300 chr3D 94.286 1820 81 13 738 2551 86343154 86341352 0.000000e+00 2763.0
6 TraesCS3A01G127300 chr3D 95.618 251 9 2 462 710 71518635 71518885 5.300000e-108 401.0
7 TraesCS3A01G127300 chr3D 84.967 306 14 10 2536 2820 86340869 86340575 7.200000e-72 281.0
8 TraesCS3A01G127300 chr3D 87.552 241 13 7 3170 3405 86340233 86340005 2.610000e-66 263.0
9 TraesCS3A01G127300 chr1A 95.015 682 34 0 1431 2112 300942739 300943420 0.000000e+00 1072.0
10 TraesCS3A01G127300 chr7A 95.301 532 25 0 1431 1962 180640857 180641388 0.000000e+00 845.0
11 TraesCS3A01G127300 chr7A 76.051 1403 268 42 1008 2379 1690803 1692168 0.000000e+00 667.0
12 TraesCS3A01G127300 chr7A 93.462 260 17 0 468 727 699150273 699150532 1.480000e-103 387.0
13 TraesCS3A01G127300 chr7A 93.050 259 16 2 463 720 722869193 722869450 8.930000e-101 377.0
14 TraesCS3A01G127300 chr7A 94.531 128 7 0 1984 2111 180641378 180641505 7.460000e-47 198.0
15 TraesCS3A01G127300 chr7D 76.288 1417 253 51 995 2377 2000000 1998633 0.000000e+00 678.0
16 TraesCS3A01G127300 chr7D 75.747 1406 275 37 1001 2376 30761253 30759884 0.000000e+00 647.0
17 TraesCS3A01G127300 chr7D 95.510 245 10 1 470 713 152542797 152543041 1.150000e-104 390.0
18 TraesCS3A01G127300 chr7D 90.323 62 6 0 3192 3253 171642038 171642099 7.840000e-12 82.4
19 TraesCS3A01G127300 chr4A 75.889 1406 272 41 1001 2376 697970055 697971423 0.000000e+00 656.0
20 TraesCS3A01G127300 chr4A 78.323 489 80 15 1318 1795 232507464 232507937 3.330000e-75 292.0
21 TraesCS3A01G127300 chr1D 94.841 252 13 0 470 721 377374072 377374323 8.870000e-106 394.0
22 TraesCS3A01G127300 chr1B 95.200 250 11 1 462 710 152079616 152079865 8.870000e-106 394.0
23 TraesCS3A01G127300 chr2A 95.851 241 10 0 470 710 350400395 350400635 1.150000e-104 390.0
24 TraesCS3A01G127300 chr2A 92.857 42 3 0 2781 2822 31200768 31200727 1.020000e-05 62.1
25 TraesCS3A01G127300 chr6D 95.142 247 11 1 465 711 444480047 444480292 4.130000e-104 388.0
26 TraesCS3A01G127300 chr5A 93.359 256 17 0 461 716 678227900 678227645 2.480000e-101 379.0
27 TraesCS3A01G127300 chr7B 80.631 222 37 5 2161 2379 682372983 682372765 2.100000e-37 167.0
28 TraesCS3A01G127300 chr7B 81.905 105 18 1 2160 2264 712767937 712768040 1.690000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G127300 chr3A 102622495 102625904 3409 True 6298.000000 6298 100.00000 1 3410 1 chr3A.!!$R1 3409
1 TraesCS3A01G127300 chr3B 136447705 136451132 3427 True 975.000000 2880 87.18825 1 3410 4 chr3B.!!$R1 3409
2 TraesCS3A01G127300 chr3D 86340005 86343154 3149 True 1102.333333 2763 88.93500 738 3405 3 chr3D.!!$R1 2667
3 TraesCS3A01G127300 chr1A 300942739 300943420 681 False 1072.000000 1072 95.01500 1431 2112 1 chr1A.!!$F1 681
4 TraesCS3A01G127300 chr7A 1690803 1692168 1365 False 667.000000 667 76.05100 1008 2379 1 chr7A.!!$F1 1371
5 TraesCS3A01G127300 chr7A 180640857 180641505 648 False 521.500000 845 94.91600 1431 2111 2 chr7A.!!$F4 680
6 TraesCS3A01G127300 chr7D 1998633 2000000 1367 True 678.000000 678 76.28800 995 2377 1 chr7D.!!$R1 1382
7 TraesCS3A01G127300 chr7D 30759884 30761253 1369 True 647.000000 647 75.74700 1001 2376 1 chr7D.!!$R2 1375
8 TraesCS3A01G127300 chr4A 697970055 697971423 1368 False 656.000000 656 75.88900 1001 2376 1 chr4A.!!$F2 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 578 0.038892 TAACCAACGAGACCGACTGC 60.039 55.0 0.0 0.0 39.5 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2553 0.104855 TACGACATGCTCTGCCCATC 59.895 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.153628 GTCCGCTAGCCACGTTGAT 60.154 57.895 9.66 0.00 0.00 2.57
69 70 6.477033 GCTAGCCACGTTGATCATATATTAGG 59.523 42.308 2.29 0.00 0.00 2.69
71 72 5.483937 AGCCACGTTGATCATATATTAGGGA 59.516 40.000 0.00 0.00 0.00 4.20
73 74 6.258727 GCCACGTTGATCATATATTAGGGATG 59.741 42.308 0.00 0.00 0.00 3.51
75 76 6.763135 CACGTTGATCATATATTAGGGATGGG 59.237 42.308 0.00 0.00 0.00 4.00
78 79 5.215845 TGATCATATATTAGGGATGGGCGA 58.784 41.667 0.00 0.00 0.00 5.54
81 82 0.912486 ATATTAGGGATGGGCGAGGC 59.088 55.000 0.00 0.00 0.00 4.70
113 114 1.470632 CGGAAGTGGACAGAGATGCTC 60.471 57.143 0.00 0.00 0.00 4.26
148 149 2.561373 GCCTCTTTTTGGCGACGG 59.439 61.111 0.00 0.00 41.03 4.79
209 210 2.441164 AACGGCCAACAACCTGCA 60.441 55.556 2.24 0.00 0.00 4.41
210 211 2.489275 AACGGCCAACAACCTGCAG 61.489 57.895 6.78 6.78 0.00 4.41
211 212 2.594303 CGGCCAACAACCTGCAGA 60.594 61.111 17.39 0.00 0.00 4.26
255 256 1.007734 GTTGACAGTGAGGCGTCGA 60.008 57.895 0.00 0.00 34.78 4.20
256 257 1.007734 TTGACAGTGAGGCGTCGAC 60.008 57.895 5.18 5.18 34.78 4.20
258 259 3.948086 GACAGTGAGGCGTCGACGG 62.948 68.421 36.13 21.11 40.23 4.79
294 295 1.518572 CGGAAGTAACGCTGGCGAT 60.519 57.895 21.77 12.38 42.83 4.58
339 340 2.463589 TTTACTCAGCGGCTGGGTGG 62.464 60.000 38.55 22.93 45.65 4.61
358 359 5.252164 GGGTGGCTGAATATATTTAGGGGTA 59.748 44.000 16.53 0.00 0.00 3.69
364 365 6.540438 TGAATATATTTAGGGGTAGAGGCG 57.460 41.667 0.00 0.00 0.00 5.52
380 381 4.207955 AGAGGCGGATAAATTTTTCCTCC 58.792 43.478 22.28 22.28 39.42 4.30
381 382 4.251103 AGGCGGATAAATTTTTCCTCCT 57.749 40.909 25.17 25.17 41.41 3.69
425 451 5.539048 ACCGAATTTATCCTCATCTAACGG 58.461 41.667 0.00 0.00 40.94 4.44
430 456 1.633774 ATCCTCATCTAACGGCGGAT 58.366 50.000 13.24 0.84 0.00 4.18
449 475 4.614078 CGGATAGAGATCGGTTAGAGTTGC 60.614 50.000 0.00 0.00 32.28 4.17
451 477 2.457598 AGAGATCGGTTAGAGTTGCCA 58.542 47.619 0.00 0.00 0.00 4.92
468 494 1.804151 GCCACGAGCAGTTCAAACATA 59.196 47.619 0.00 0.00 42.97 2.29
471 497 4.494199 GCCACGAGCAGTTCAAACATATAC 60.494 45.833 0.00 0.00 42.97 1.47
472 498 4.870426 CCACGAGCAGTTCAAACATATACT 59.130 41.667 0.00 0.00 0.00 2.12
473 499 5.005779 CCACGAGCAGTTCAAACATATACTC 59.994 44.000 0.00 0.00 0.00 2.59
474 500 5.005779 CACGAGCAGTTCAAACATATACTCC 59.994 44.000 0.00 0.00 0.00 3.85
475 501 4.508124 CGAGCAGTTCAAACATATACTCCC 59.492 45.833 0.00 0.00 0.00 4.30
476 502 5.675538 GAGCAGTTCAAACATATACTCCCT 58.324 41.667 0.00 0.00 0.00 4.20
477 503 5.675538 AGCAGTTCAAACATATACTCCCTC 58.324 41.667 0.00 0.00 0.00 4.30
478 504 4.816925 GCAGTTCAAACATATACTCCCTCC 59.183 45.833 0.00 0.00 0.00 4.30
479 505 5.629133 GCAGTTCAAACATATACTCCCTCCA 60.629 44.000 0.00 0.00 0.00 3.86
480 506 6.595682 CAGTTCAAACATATACTCCCTCCAT 58.404 40.000 0.00 0.00 0.00 3.41
481 507 7.056635 CAGTTCAAACATATACTCCCTCCATT 58.943 38.462 0.00 0.00 0.00 3.16
482 508 7.557719 CAGTTCAAACATATACTCCCTCCATTT 59.442 37.037 0.00 0.00 0.00 2.32
483 509 7.775561 AGTTCAAACATATACTCCCTCCATTTC 59.224 37.037 0.00 0.00 0.00 2.17
484 510 7.206789 TCAAACATATACTCCCTCCATTTCA 57.793 36.000 0.00 0.00 0.00 2.69
485 511 7.638444 TCAAACATATACTCCCTCCATTTCAA 58.362 34.615 0.00 0.00 0.00 2.69
486 512 8.112822 TCAAACATATACTCCCTCCATTTCAAA 58.887 33.333 0.00 0.00 0.00 2.69
487 513 8.748412 CAAACATATACTCCCTCCATTTCAAAA 58.252 33.333 0.00 0.00 0.00 2.44
488 514 9.492730 AAACATATACTCCCTCCATTTCAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
494 520 9.799106 ATACTCCCTCCATTTCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
495 521 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
496 522 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
497 523 5.215160 CCTCCATTTCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
498 524 5.181690 TCCATTTCAAAATATAGTGCGCC 57.818 39.130 4.18 0.00 0.00 6.53
499 525 4.037446 TCCATTTCAAAATATAGTGCGCCC 59.963 41.667 4.18 0.00 0.00 6.13
500 526 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
501 527 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
502 528 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
516 542 4.697756 CGCGCTTCCCAAGGTCCA 62.698 66.667 5.56 0.00 0.00 4.02
517 543 2.282180 GCGCTTCCCAAGGTCCAA 60.282 61.111 0.00 0.00 0.00 3.53
518 544 2.626780 GCGCTTCCCAAGGTCCAAC 61.627 63.158 0.00 0.00 0.00 3.77
519 545 1.073199 CGCTTCCCAAGGTCCAACT 59.927 57.895 0.00 0.00 0.00 3.16
520 546 0.537371 CGCTTCCCAAGGTCCAACTT 60.537 55.000 0.00 0.00 0.00 2.66
521 547 1.704641 GCTTCCCAAGGTCCAACTTT 58.295 50.000 0.00 0.00 0.00 2.66
522 548 1.341209 GCTTCCCAAGGTCCAACTTTG 59.659 52.381 0.00 0.00 35.28 2.77
523 549 2.944129 CTTCCCAAGGTCCAACTTTGA 58.056 47.619 3.77 0.00 37.36 2.69
524 550 2.358322 TCCCAAGGTCCAACTTTGAC 57.642 50.000 3.77 0.00 37.36 3.18
525 551 1.133606 TCCCAAGGTCCAACTTTGACC 60.134 52.381 4.16 4.16 37.36 4.02
526 552 1.410932 CCCAAGGTCCAACTTTGACCA 60.411 52.381 13.24 0.00 37.36 4.02
527 553 2.597455 CCAAGGTCCAACTTTGACCAT 58.403 47.619 13.24 0.09 37.36 3.55
528 554 3.499563 CCCAAGGTCCAACTTTGACCATA 60.500 47.826 13.24 0.00 37.36 2.74
529 555 4.148838 CCAAGGTCCAACTTTGACCATAA 58.851 43.478 13.24 0.00 37.36 1.90
530 556 4.586841 CCAAGGTCCAACTTTGACCATAAA 59.413 41.667 13.24 0.00 37.36 1.40
531 557 5.245977 CCAAGGTCCAACTTTGACCATAAAT 59.754 40.000 13.24 0.00 37.36 1.40
532 558 6.239572 CCAAGGTCCAACTTTGACCATAAATT 60.240 38.462 13.24 0.00 37.36 1.82
533 559 6.994421 AGGTCCAACTTTGACCATAAATTT 57.006 33.333 13.24 0.00 41.22 1.82
534 560 8.364142 CAAGGTCCAACTTTGACCATAAATTTA 58.636 33.333 13.24 0.00 37.36 1.40
535 561 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
536 562 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
537 563 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
538 564 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
539 565 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
540 566 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
541 567 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
542 568 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
543 569 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
544 570 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
545 571 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
546 572 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
547 573 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
548 574 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
549 575 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
550 576 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
551 577 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
552 578 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
553 579 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
563 589 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
564 590 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
565 591 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
614 640 9.961265 TCGAATACGAATTCACTGATATAACTT 57.039 29.630 6.22 0.00 45.74 2.66
619 645 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
620 646 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
621 647 8.607459 CGAATTCACTGATATAACTTTTGCTCT 58.393 33.333 6.22 0.00 0.00 4.09
622 648 9.928236 GAATTCACTGATATAACTTTTGCTCTC 57.072 33.333 0.00 0.00 0.00 3.20
623 649 7.525688 TTCACTGATATAACTTTTGCTCTCG 57.474 36.000 0.00 0.00 0.00 4.04
624 650 5.520288 TCACTGATATAACTTTTGCTCTCGC 59.480 40.000 0.00 0.00 0.00 5.03
625 651 4.811557 ACTGATATAACTTTTGCTCTCGCC 59.188 41.667 0.00 0.00 34.43 5.54
626 652 3.802139 TGATATAACTTTTGCTCTCGCCG 59.198 43.478 0.00 0.00 34.43 6.46
627 653 0.727398 ATAACTTTTGCTCTCGCCGC 59.273 50.000 0.00 0.00 34.43 6.53
628 654 0.601576 TAACTTTTGCTCTCGCCGCA 60.602 50.000 0.00 0.00 35.22 5.69
629 655 1.444119 AACTTTTGCTCTCGCCGCAA 61.444 50.000 2.44 2.44 44.83 4.85
630 656 1.237285 ACTTTTGCTCTCGCCGCAAT 61.237 50.000 6.66 0.00 45.67 3.56
631 657 0.522076 CTTTTGCTCTCGCCGCAATC 60.522 55.000 6.66 0.00 45.67 2.67
632 658 2.239341 TTTTGCTCTCGCCGCAATCG 62.239 55.000 6.66 0.00 45.67 3.34
633 659 3.641159 TTGCTCTCGCCGCAATCGA 62.641 57.895 0.00 0.00 41.97 3.59
634 660 2.659897 GCTCTCGCCGCAATCGAT 60.660 61.111 0.00 0.00 38.10 3.59
635 661 2.653022 GCTCTCGCCGCAATCGATC 61.653 63.158 0.00 0.00 38.10 3.69
636 662 1.007964 CTCTCGCCGCAATCGATCT 60.008 57.895 0.00 0.00 38.10 2.75
637 663 0.596083 CTCTCGCCGCAATCGATCTT 60.596 55.000 0.00 0.00 38.10 2.40
638 664 0.871592 TCTCGCCGCAATCGATCTTG 60.872 55.000 0.00 0.00 38.10 3.02
639 665 0.871592 CTCGCCGCAATCGATCTTGA 60.872 55.000 0.00 0.00 38.10 3.02
640 666 0.249447 TCGCCGCAATCGATCTTGAT 60.249 50.000 0.00 0.00 38.10 2.57
641 667 1.000717 TCGCCGCAATCGATCTTGATA 60.001 47.619 0.00 0.00 38.10 2.15
642 668 1.388093 CGCCGCAATCGATCTTGATAG 59.612 52.381 0.00 0.00 38.10 2.08
643 669 2.408050 GCCGCAATCGATCTTGATAGT 58.592 47.619 0.00 0.00 38.10 2.12
644 670 2.802816 GCCGCAATCGATCTTGATAGTT 59.197 45.455 0.00 0.00 38.10 2.24
645 671 3.987868 GCCGCAATCGATCTTGATAGTTA 59.012 43.478 0.00 0.00 38.10 2.24
646 672 4.447724 GCCGCAATCGATCTTGATAGTTAA 59.552 41.667 0.00 0.00 38.10 2.01
647 673 5.050363 GCCGCAATCGATCTTGATAGTTAAA 60.050 40.000 0.00 0.00 38.10 1.52
648 674 6.347725 GCCGCAATCGATCTTGATAGTTAAAT 60.348 38.462 0.00 0.00 38.10 1.40
649 675 7.576236 CCGCAATCGATCTTGATAGTTAAATT 58.424 34.615 0.00 0.00 38.10 1.82
650 676 8.070171 CCGCAATCGATCTTGATAGTTAAATTT 58.930 33.333 0.00 0.00 38.10 1.82
655 681 9.760077 ATCGATCTTGATAGTTAAATTTACGGT 57.240 29.630 0.00 0.00 0.00 4.83
656 682 9.241317 TCGATCTTGATAGTTAAATTTACGGTC 57.759 33.333 0.00 0.00 0.00 4.79
657 683 9.027129 CGATCTTGATAGTTAAATTTACGGTCA 57.973 33.333 0.00 0.00 0.00 4.02
667 693 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
668 694 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
669 695 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
670 696 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
671 697 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.00 39.21 4.35
672 698 1.070577 CGGTCAAAGTTGAAGCACGAG 60.071 52.381 0.00 0.00 39.21 4.18
673 699 1.264288 GGTCAAAGTTGAAGCACGAGG 59.736 52.381 0.00 0.00 39.21 4.63
674 700 2.210116 GTCAAAGTTGAAGCACGAGGA 58.790 47.619 0.00 0.00 39.21 3.71
675 701 2.808543 GTCAAAGTTGAAGCACGAGGAT 59.191 45.455 0.00 0.00 39.21 3.24
676 702 3.994392 GTCAAAGTTGAAGCACGAGGATA 59.006 43.478 0.00 0.00 39.21 2.59
677 703 4.092091 GTCAAAGTTGAAGCACGAGGATAG 59.908 45.833 0.00 0.00 39.21 2.08
678 704 4.021456 TCAAAGTTGAAGCACGAGGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
679 705 4.537135 AAGTTGAAGCACGAGGATAGAA 57.463 40.909 0.00 0.00 0.00 2.10
680 706 4.116747 AGTTGAAGCACGAGGATAGAAG 57.883 45.455 0.00 0.00 0.00 2.85
681 707 3.764434 AGTTGAAGCACGAGGATAGAAGA 59.236 43.478 0.00 0.00 0.00 2.87
682 708 4.220821 AGTTGAAGCACGAGGATAGAAGAA 59.779 41.667 0.00 0.00 0.00 2.52
683 709 4.377839 TGAAGCACGAGGATAGAAGAAG 57.622 45.455 0.00 0.00 0.00 2.85
684 710 2.880963 AGCACGAGGATAGAAGAAGC 57.119 50.000 0.00 0.00 0.00 3.86
685 711 2.103373 AGCACGAGGATAGAAGAAGCA 58.897 47.619 0.00 0.00 0.00 3.91
686 712 2.159170 AGCACGAGGATAGAAGAAGCAC 60.159 50.000 0.00 0.00 0.00 4.40
687 713 2.159170 GCACGAGGATAGAAGAAGCACT 60.159 50.000 0.00 0.00 0.00 4.40
688 714 3.066900 GCACGAGGATAGAAGAAGCACTA 59.933 47.826 0.00 0.00 0.00 2.74
689 715 4.602995 CACGAGGATAGAAGAAGCACTAC 58.397 47.826 0.00 0.00 0.00 2.73
690 716 4.096532 CACGAGGATAGAAGAAGCACTACA 59.903 45.833 0.00 0.00 0.00 2.74
691 717 4.890581 ACGAGGATAGAAGAAGCACTACAT 59.109 41.667 0.00 0.00 0.00 2.29
692 718 5.361285 ACGAGGATAGAAGAAGCACTACATT 59.639 40.000 0.00 0.00 0.00 2.71
693 719 5.689514 CGAGGATAGAAGAAGCACTACATTG 59.310 44.000 0.00 0.00 0.00 2.82
694 720 6.552445 AGGATAGAAGAAGCACTACATTGT 57.448 37.500 0.00 0.00 0.00 2.71
695 721 6.344500 AGGATAGAAGAAGCACTACATTGTG 58.656 40.000 0.00 0.00 40.62 3.33
696 722 5.525378 GGATAGAAGAAGCACTACATTGTGG 59.475 44.000 0.00 0.00 38.31 4.17
697 723 4.623932 AGAAGAAGCACTACATTGTGGA 57.376 40.909 7.20 0.00 38.31 4.02
698 724 4.973168 AGAAGAAGCACTACATTGTGGAA 58.027 39.130 7.20 0.00 38.31 3.53
699 725 5.564550 AGAAGAAGCACTACATTGTGGAAT 58.435 37.500 7.20 0.00 38.31 3.01
700 726 5.413833 AGAAGAAGCACTACATTGTGGAATG 59.586 40.000 7.20 0.00 44.11 2.67
701 727 4.012374 AGAAGCACTACATTGTGGAATGG 58.988 43.478 7.20 0.00 43.00 3.16
702 728 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
706 732 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
707 733 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
708 734 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
709 735 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
710 736 3.591527 ACATTGTGGAATGGAGGGAGTAA 59.408 43.478 0.00 0.00 43.00 2.24
720 746 3.420893 TGGAGGGAGTAAATGCAAAGTG 58.579 45.455 0.00 0.00 0.00 3.16
785 815 5.062308 GCAGTAGATTTGTTAACTCTCACGG 59.938 44.000 7.22 3.91 0.00 4.94
808 838 1.538117 GACGTAAGCTATGACGCCGC 61.538 60.000 13.79 3.02 42.81 6.53
861 891 5.763204 TCCTTGAACATTCAGTCAGGTAAAC 59.237 40.000 9.59 0.00 38.61 2.01
895 927 8.416329 AGAGCACATTCAGTTTTGAGTTTTTAT 58.584 29.630 0.00 0.00 34.15 1.40
896 928 9.677567 GAGCACATTCAGTTTTGAGTTTTTATA 57.322 29.630 0.00 0.00 34.15 0.98
916 950 3.790089 ACCCTATAAATAGTGCAGCCC 57.210 47.619 0.00 0.00 0.00 5.19
921 955 1.590591 TAAATAGTGCAGCCCCTCCA 58.409 50.000 0.00 0.00 0.00 3.86
969 1003 1.525923 CCATCTCAGTCCAGCCCTG 59.474 63.158 0.00 0.00 0.00 4.45
1230 1264 2.281429 GGGGGCGACTACTACCCT 59.719 66.667 0.00 0.00 43.68 4.34
1239 1273 1.452651 CTACTACCCTGTCGCCGGA 60.453 63.158 5.05 0.00 0.00 5.14
1414 1454 1.034356 TGTCGTCGAGGACCTTTTCA 58.966 50.000 29.52 11.85 36.07 2.69
1521 1561 2.034879 CGGCTTCGTCTGCAACCAT 61.035 57.895 0.00 0.00 0.00 3.55
1856 1896 4.143333 CCTGACGCGGTACCAGGG 62.143 72.222 22.76 14.83 42.75 4.45
1857 1897 4.814294 CTGACGCGGTACCAGGGC 62.814 72.222 12.47 6.45 0.00 5.19
2325 2383 4.357947 GCCGAGGTGTCGCTGTCA 62.358 66.667 0.00 0.00 45.41 3.58
2411 2469 6.534934 GTGCCAATTTTGTTTCGTTGTAAAA 58.465 32.000 0.00 0.00 0.00 1.52
2427 2485 8.071368 TCGTTGTAAAACATGAGTGGTATTTTC 58.929 33.333 0.00 0.00 0.00 2.29
2437 2495 6.867519 TGAGTGGTATTTTCTGGTGAGATA 57.132 37.500 0.00 0.00 0.00 1.98
2452 2510 8.999431 TCTGGTGAGATAAATAAACTGTCAAAC 58.001 33.333 0.00 0.00 0.00 2.93
2487 2545 7.708998 TCACAAAAGTTAAGCTAAATTTCGGT 58.291 30.769 0.00 0.00 35.22 4.69
2493 2551 9.836076 AAAGTTAAGCTAAATTTCGGTTATGAC 57.164 29.630 13.20 10.24 31.13 3.06
2494 2552 8.788325 AGTTAAGCTAAATTTCGGTTATGACT 57.212 30.769 13.20 11.84 0.00 3.41
2495 2553 8.665685 AGTTAAGCTAAATTTCGGTTATGACTG 58.334 33.333 13.20 0.00 0.00 3.51
2496 2554 8.662141 GTTAAGCTAAATTTCGGTTATGACTGA 58.338 33.333 13.20 0.00 39.38 3.41
2497 2555 7.865706 AAGCTAAATTTCGGTTATGACTGAT 57.134 32.000 5.44 0.00 40.73 2.90
2499 2557 6.260936 AGCTAAATTTCGGTTATGACTGATGG 59.739 38.462 0.00 0.00 40.73 3.51
2500 2558 5.835113 AAATTTCGGTTATGACTGATGGG 57.165 39.130 0.00 0.00 40.73 4.00
2501 2559 2.325583 TTCGGTTATGACTGATGGGC 57.674 50.000 0.00 0.00 40.73 5.36
2502 2560 1.199615 TCGGTTATGACTGATGGGCA 58.800 50.000 0.00 0.00 36.26 5.36
2511 2569 4.970621 TGATGGGCAGAGCATGTC 57.029 55.556 0.00 0.00 0.00 3.06
2512 2570 1.153309 TGATGGGCAGAGCATGTCG 60.153 57.895 0.00 0.00 32.79 4.35
2513 2571 1.153289 GATGGGCAGAGCATGTCGT 60.153 57.895 0.00 0.00 32.79 4.34
2514 2572 0.104855 GATGGGCAGAGCATGTCGTA 59.895 55.000 0.00 0.00 32.79 3.43
2515 2573 0.761187 ATGGGCAGAGCATGTCGTAT 59.239 50.000 0.00 0.00 32.79 3.06
2516 2574 1.408969 TGGGCAGAGCATGTCGTATA 58.591 50.000 0.00 0.00 32.79 1.47
2517 2575 1.068588 TGGGCAGAGCATGTCGTATAC 59.931 52.381 0.00 0.00 32.79 1.47
2551 2609 5.250200 ACCCTGAATTACGTGCTGAATTTA 58.750 37.500 0.00 0.00 0.00 1.40
2572 3126 6.968263 TTAGAGAGAGAGAGAGAGAGAGAG 57.032 45.833 0.00 0.00 0.00 3.20
2574 3128 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
2576 3130 6.041865 AGAGAGAGAGAGAGAGAGAGAGAATG 59.958 46.154 0.00 0.00 0.00 2.67
2600 3161 3.432186 GGTATGTCACAGAGGCATTAGCA 60.432 47.826 0.00 0.00 40.35 3.49
2638 3204 3.622163 CGAATAGTACCGTCACTCTCACT 59.378 47.826 0.00 0.00 0.00 3.41
2661 3227 1.702491 GGTTGGTCATTAGCGACGGC 61.702 60.000 0.00 0.00 38.23 5.68
2674 3248 0.719465 CGACGGCTACATTGTTCACC 59.281 55.000 0.00 0.00 0.00 4.02
2736 3310 6.494893 TTACAGGTTACATTCTTCACATGC 57.505 37.500 0.00 0.00 0.00 4.06
2763 3337 8.788806 CACCAATAACTGTCATGTTTAAGGTAA 58.211 33.333 0.00 0.00 30.52 2.85
2823 3397 8.286191 AGTCATCTGAATTTAGAATTTGGGTC 57.714 34.615 3.79 0.00 0.00 4.46
2828 3402 7.761409 TCTGAATTTAGAATTTGGGTCAATCG 58.239 34.615 0.00 0.00 0.00 3.34
2836 3410 7.174107 AGAATTTGGGTCAATCGATTTTCAT 57.826 32.000 8.21 0.00 0.00 2.57
2846 3420 6.744537 GTCAATCGATTTTCATGTGAAGGAAG 59.255 38.462 8.21 0.00 35.21 3.46
2848 3422 4.905429 TCGATTTTCATGTGAAGGAAGGA 58.095 39.130 0.00 0.00 35.21 3.36
2849 3423 5.312895 TCGATTTTCATGTGAAGGAAGGAA 58.687 37.500 0.00 0.00 35.21 3.36
2850 3424 5.181245 TCGATTTTCATGTGAAGGAAGGAAC 59.819 40.000 0.00 0.00 35.21 3.62
2851 3425 5.048782 CGATTTTCATGTGAAGGAAGGAACA 60.049 40.000 0.00 0.00 35.21 3.18
2852 3426 6.514870 CGATTTTCATGTGAAGGAAGGAACAA 60.515 38.462 0.00 0.00 35.21 2.83
2853 3427 5.514274 TTTCATGTGAAGGAAGGAACAAC 57.486 39.130 0.00 0.00 35.21 3.32
2854 3428 3.486383 TCATGTGAAGGAAGGAACAACC 58.514 45.455 0.00 0.00 39.35 3.77
2855 3429 1.961793 TGTGAAGGAAGGAACAACCG 58.038 50.000 0.00 0.00 44.74 4.44
2856 3430 1.235724 GTGAAGGAAGGAACAACCGG 58.764 55.000 0.00 0.00 44.74 5.28
2857 3431 1.133363 TGAAGGAAGGAACAACCGGA 58.867 50.000 9.46 0.00 44.74 5.14
2858 3432 1.071699 TGAAGGAAGGAACAACCGGAG 59.928 52.381 9.46 1.96 44.74 4.63
2872 3446 1.068250 CGGAGGGAAGGAAGATCGC 59.932 63.158 0.00 0.00 0.00 4.58
2873 3447 1.448069 GGAGGGAAGGAAGATCGCC 59.552 63.158 0.00 0.00 0.00 5.54
2874 3448 1.338136 GGAGGGAAGGAAGATCGCCA 61.338 60.000 9.83 0.00 0.00 5.69
2875 3449 0.761802 GAGGGAAGGAAGATCGCCAT 59.238 55.000 9.83 0.00 0.00 4.40
2876 3450 1.141858 GAGGGAAGGAAGATCGCCATT 59.858 52.381 9.83 0.00 0.00 3.16
2877 3451 2.368875 GAGGGAAGGAAGATCGCCATTA 59.631 50.000 9.83 0.00 0.00 1.90
2878 3452 2.982488 AGGGAAGGAAGATCGCCATTAT 59.018 45.455 9.83 0.00 0.00 1.28
2879 3453 4.168101 AGGGAAGGAAGATCGCCATTATA 58.832 43.478 9.83 0.00 0.00 0.98
2880 3454 4.785376 AGGGAAGGAAGATCGCCATTATAT 59.215 41.667 9.83 0.00 0.00 0.86
2881 3455 4.878397 GGGAAGGAAGATCGCCATTATATG 59.122 45.833 9.83 0.00 0.00 1.78
2882 3456 5.491982 GGAAGGAAGATCGCCATTATATGT 58.508 41.667 9.83 0.00 0.00 2.29
2883 3457 6.351881 GGGAAGGAAGATCGCCATTATATGTA 60.352 42.308 9.83 0.00 0.00 2.29
2884 3458 7.103641 GGAAGGAAGATCGCCATTATATGTAA 58.896 38.462 9.83 0.00 0.00 2.41
2885 3459 7.278868 GGAAGGAAGATCGCCATTATATGTAAG 59.721 40.741 9.83 0.00 0.00 2.34
2886 3460 7.246171 AGGAAGATCGCCATTATATGTAAGT 57.754 36.000 9.83 0.00 0.00 2.24
2887 3461 7.324178 AGGAAGATCGCCATTATATGTAAGTC 58.676 38.462 9.83 0.00 0.00 3.01
2888 3462 6.253727 GGAAGATCGCCATTATATGTAAGTCG 59.746 42.308 3.14 0.00 0.00 4.18
2889 3463 5.103000 AGATCGCCATTATATGTAAGTCGC 58.897 41.667 0.00 0.00 0.00 5.19
2890 3464 3.581755 TCGCCATTATATGTAAGTCGCC 58.418 45.455 0.00 0.00 0.00 5.54
2891 3465 2.671396 CGCCATTATATGTAAGTCGCCC 59.329 50.000 0.00 0.00 0.00 6.13
2892 3466 2.671396 GCCATTATATGTAAGTCGCCCG 59.329 50.000 0.00 0.00 0.00 6.13
2893 3467 3.615592 GCCATTATATGTAAGTCGCCCGA 60.616 47.826 0.00 0.00 0.00 5.14
2894 3468 4.562082 CCATTATATGTAAGTCGCCCGAA 58.438 43.478 0.00 0.00 0.00 4.30
2895 3469 5.175859 CCATTATATGTAAGTCGCCCGAAT 58.824 41.667 0.00 0.00 0.00 3.34
2896 3470 5.642063 CCATTATATGTAAGTCGCCCGAATT 59.358 40.000 8.43 8.43 36.39 2.17
2897 3471 6.148811 CCATTATATGTAAGTCGCCCGAATTT 59.851 38.462 8.67 1.95 34.21 1.82
2898 3472 7.332430 CCATTATATGTAAGTCGCCCGAATTTA 59.668 37.037 8.67 1.06 34.21 1.40
2899 3473 7.878477 TTATATGTAAGTCGCCCGAATTTAG 57.122 36.000 8.67 0.00 34.21 1.85
2900 3474 3.872511 TGTAAGTCGCCCGAATTTAGA 57.127 42.857 8.67 0.00 34.21 2.10
2901 3475 4.191033 TGTAAGTCGCCCGAATTTAGAA 57.809 40.909 8.67 0.00 34.21 2.10
2902 3476 4.761975 TGTAAGTCGCCCGAATTTAGAAT 58.238 39.130 8.67 0.00 34.21 2.40
2903 3477 4.807304 TGTAAGTCGCCCGAATTTAGAATC 59.193 41.667 8.67 0.00 34.21 2.52
2904 3478 3.821421 AGTCGCCCGAATTTAGAATCT 57.179 42.857 0.00 0.00 0.00 2.40
2905 3479 3.458189 AGTCGCCCGAATTTAGAATCTG 58.542 45.455 0.00 0.00 0.00 2.90
2906 3480 2.544267 GTCGCCCGAATTTAGAATCTGG 59.456 50.000 0.00 0.00 0.00 3.86
2907 3481 1.873591 CGCCCGAATTTAGAATCTGGG 59.126 52.381 0.00 0.00 38.23 4.45
2908 3482 2.745152 CGCCCGAATTTAGAATCTGGGT 60.745 50.000 3.47 0.00 37.49 4.51
2909 3483 2.879026 GCCCGAATTTAGAATCTGGGTC 59.121 50.000 3.47 0.00 37.49 4.46
2910 3484 3.684413 GCCCGAATTTAGAATCTGGGTCA 60.684 47.826 3.47 0.00 37.49 4.02
2911 3485 4.523083 CCCGAATTTAGAATCTGGGTCAA 58.477 43.478 0.00 0.00 0.00 3.18
2912 3486 5.133221 CCCGAATTTAGAATCTGGGTCAAT 58.867 41.667 0.00 0.00 0.00 2.57
2913 3487 5.239525 CCCGAATTTAGAATCTGGGTCAATC 59.760 44.000 0.00 0.00 0.00 2.67
2914 3488 5.050091 CCGAATTTAGAATCTGGGTCAATCG 60.050 44.000 0.00 0.00 0.00 3.34
2915 3489 5.753438 CGAATTTAGAATCTGGGTCAATCGA 59.247 40.000 0.00 0.00 0.00 3.59
2916 3490 6.425114 CGAATTTAGAATCTGGGTCAATCGAT 59.575 38.462 0.00 0.00 0.00 3.59
2917 3491 7.041780 CGAATTTAGAATCTGGGTCAATCGATT 60.042 37.037 4.39 4.39 0.00 3.34
2918 3492 8.525290 AATTTAGAATCTGGGTCAATCGATTT 57.475 30.769 8.21 0.00 0.00 2.17
2919 3493 7.938140 TTTAGAATCTGGGTCAATCGATTTT 57.062 32.000 8.21 0.00 0.00 1.82
2920 3494 7.553881 TTAGAATCTGGGTCAATCGATTTTC 57.446 36.000 8.21 7.32 0.00 2.29
2921 3495 5.749462 AGAATCTGGGTCAATCGATTTTCT 58.251 37.500 8.21 9.51 0.00 2.52
2922 3496 5.819901 AGAATCTGGGTCAATCGATTTTCTC 59.180 40.000 8.21 5.14 0.00 2.87
2959 3533 0.483328 CGGAGGAGGGGAAGGAGATA 59.517 60.000 0.00 0.00 0.00 1.98
2960 3534 1.549037 CGGAGGAGGGGAAGGAGATAG 60.549 61.905 0.00 0.00 0.00 2.08
2964 3538 0.178958 GAGGGGAAGGAGATAGCCGA 60.179 60.000 0.00 0.00 0.00 5.54
2978 3552 2.660064 GCCGAAGAAGCCCTCTGGA 61.660 63.158 0.00 0.00 33.37 3.86
3003 3651 1.689233 TTAGGATGGCAGGCGACCT 60.689 57.895 14.43 14.43 35.11 3.85
3005 3653 4.899239 GGATGGCAGGCGACCTCG 62.899 72.222 0.00 0.00 43.27 4.63
3025 3673 3.386726 TCGTTATCTATCTTGGGGTGTGG 59.613 47.826 0.00 0.00 0.00 4.17
3027 3675 2.286935 ATCTATCTTGGGGTGTGGGT 57.713 50.000 0.00 0.00 0.00 4.51
3089 3748 1.067846 CGATCATCGCCGGGATTAGAA 60.068 52.381 2.18 0.00 31.28 2.10
3095 3754 0.679505 CGCCGGGATTAGAAGGATGA 59.320 55.000 2.18 0.00 0.00 2.92
3096 3755 1.605712 CGCCGGGATTAGAAGGATGAC 60.606 57.143 2.18 0.00 0.00 3.06
3099 3758 1.000955 CGGGATTAGAAGGATGACCGG 59.999 57.143 0.00 0.00 41.83 5.28
3103 3763 0.619255 TTAGAAGGATGACCGGGGCA 60.619 55.000 4.28 4.28 41.83 5.36
3116 3776 3.683937 GGGCAGCGGCAACACAAT 61.684 61.111 11.88 0.00 43.71 2.71
3118 3778 2.644418 GCAGCGGCAACACAATGA 59.356 55.556 3.18 0.00 40.72 2.57
3134 3794 2.768344 GATTGAGGGGAGGGCGGA 60.768 66.667 0.00 0.00 0.00 5.54
3153 3813 3.555324 TGGCAAGGCTGTCACCGA 61.555 61.111 0.00 0.00 30.26 4.69
3157 3817 1.597854 CAAGGCTGTCACCGAAGCA 60.598 57.895 0.00 0.00 41.36 3.91
3166 3826 3.872603 ACCGAAGCACCACCAGCA 61.873 61.111 0.00 0.00 0.00 4.41
3168 3828 2.281070 CGAAGCACCACCAGCAGT 60.281 61.111 0.00 0.00 0.00 4.40
3187 3847 3.755628 GGCGGCGTAGACAGGTGA 61.756 66.667 9.37 0.00 27.25 4.02
3191 3934 0.866061 CGGCGTAGACAGGTGATTCG 60.866 60.000 0.00 0.00 27.25 3.34
3254 3997 5.355350 AGGAAGACGATGAACAATGATTTCC 59.645 40.000 0.00 0.00 0.00 3.13
3255 3998 4.864916 AGACGATGAACAATGATTTCCG 57.135 40.909 0.00 0.00 0.00 4.30
3256 3999 3.623060 AGACGATGAACAATGATTTCCGG 59.377 43.478 0.00 0.00 0.00 5.14
3266 4009 6.240549 ACAATGATTTCCGGAGATAGAAGT 57.759 37.500 7.60 2.45 0.00 3.01
3268 4011 7.792032 ACAATGATTTCCGGAGATAGAAGTTA 58.208 34.615 7.60 0.00 0.00 2.24
3273 4016 6.785337 TTTCCGGAGATAGAAGTTATGTCA 57.215 37.500 3.34 0.00 0.00 3.58
3305 4048 0.958822 ATTCAACGGCTGGGAACAAC 59.041 50.000 0.00 0.00 42.06 3.32
3338 4087 3.694072 TCTAAATTCAGTCAATTGCCCCG 59.306 43.478 0.00 0.00 34.69 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.954611 GCCGCCCTTCAAGTGTTC 59.045 61.111 0.00 0.00 0.00 3.18
33 34 4.849329 GGCTAGCGGACCGTGACG 62.849 72.222 16.73 0.00 0.00 4.35
38 39 4.430765 AACGTGGCTAGCGGACCG 62.431 66.667 10.29 10.29 0.00 4.79
47 48 5.483937 TCCCTAATATATGATCAACGTGGCT 59.516 40.000 0.00 0.00 0.00 4.75
48 49 5.730550 TCCCTAATATATGATCAACGTGGC 58.269 41.667 0.00 0.00 0.00 5.01
58 59 3.967326 CCTCGCCCATCCCTAATATATGA 59.033 47.826 0.00 0.00 0.00 2.15
69 70 1.821332 CTCAAAGCCTCGCCCATCC 60.821 63.158 0.00 0.00 0.00 3.51
71 72 0.465097 CATCTCAAAGCCTCGCCCAT 60.465 55.000 0.00 0.00 0.00 4.00
73 74 1.821332 CCATCTCAAAGCCTCGCCC 60.821 63.158 0.00 0.00 0.00 6.13
75 76 2.476320 GGCCATCTCAAAGCCTCGC 61.476 63.158 0.00 0.00 43.62 5.03
78 79 1.852157 TTCCGGCCATCTCAAAGCCT 61.852 55.000 2.24 0.00 44.84 4.58
81 82 1.089920 CACTTCCGGCCATCTCAAAG 58.910 55.000 2.24 0.00 0.00 2.77
113 114 1.068434 GGCTCGGATCTTCTTCCTCTG 59.932 57.143 0.00 0.00 33.30 3.35
148 149 4.495336 TTGCCGCCGCATCATTGC 62.495 61.111 0.00 0.00 46.67 3.56
200 201 1.871080 CTCGACTTTCTGCAGGTTGT 58.129 50.000 15.13 9.87 0.00 3.32
209 210 1.373497 CACCGCTGCTCGACTTTCT 60.373 57.895 0.00 0.00 41.67 2.52
210 211 1.347817 CTCACCGCTGCTCGACTTTC 61.348 60.000 0.00 0.00 41.67 2.62
211 212 1.373497 CTCACCGCTGCTCGACTTT 60.373 57.895 0.00 0.00 41.67 2.66
233 234 0.249911 ACGCCTCACTGTCAACCTTC 60.250 55.000 0.00 0.00 0.00 3.46
255 256 1.982938 GACTAGCCACCACCTCCGT 60.983 63.158 0.00 0.00 0.00 4.69
256 257 1.982395 TGACTAGCCACCACCTCCG 60.982 63.158 0.00 0.00 0.00 4.63
278 279 0.645868 GTCATCGCCAGCGTTACTTC 59.354 55.000 12.32 0.00 40.74 3.01
294 295 1.522806 GCCACTCCACGTTGTGTCA 60.523 57.895 10.79 0.00 32.76 3.58
328 329 2.965716 ATATTCAGCCACCCAGCCGC 62.966 60.000 0.00 0.00 0.00 6.53
334 335 4.044191 ACCCCTAAATATATTCAGCCACCC 59.956 45.833 0.00 0.00 0.00 4.61
339 340 6.350103 GCCTCTACCCCTAAATATATTCAGC 58.650 44.000 0.00 0.00 0.00 4.26
341 342 5.424252 CCGCCTCTACCCCTAAATATATTCA 59.576 44.000 0.00 0.00 0.00 2.57
343 344 5.596763 TCCGCCTCTACCCCTAAATATATT 58.403 41.667 0.00 0.00 0.00 1.28
344 345 5.216665 TCCGCCTCTACCCCTAAATATAT 57.783 43.478 0.00 0.00 0.00 0.86
364 365 9.135843 CGTTTTTACAGGAGGAAAAATTTATCC 57.864 33.333 2.10 0.00 37.01 2.59
380 381 6.035327 CGGTTACCCTTCTATCGTTTTTACAG 59.965 42.308 0.00 0.00 0.00 2.74
381 382 5.868801 CGGTTACCCTTCTATCGTTTTTACA 59.131 40.000 0.00 0.00 0.00 2.41
417 443 2.678836 CGATCTCTATCCGCCGTTAGAT 59.321 50.000 0.00 0.00 0.00 1.98
425 451 3.075884 ACTCTAACCGATCTCTATCCGC 58.924 50.000 0.00 0.00 0.00 5.54
430 456 3.380637 GTGGCAACTCTAACCGATCTCTA 59.619 47.826 0.00 0.00 37.61 2.43
449 475 4.870426 AGTATATGTTTGAACTGCTCGTGG 59.130 41.667 0.00 0.00 0.00 4.94
451 477 5.109903 GGAGTATATGTTTGAACTGCTCGT 58.890 41.667 0.00 0.00 0.00 4.18
468 494 9.799106 CACTATATTTTGAAATGGAGGGAGTAT 57.201 33.333 0.00 0.00 0.00 2.12
471 497 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
472 498 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
473 499 5.762045 CGCACTATATTTTGAAATGGAGGG 58.238 41.667 0.00 0.00 0.00 4.30
474 500 5.215160 GCGCACTATATTTTGAAATGGAGG 58.785 41.667 0.30 0.00 0.00 4.30
475 501 5.215160 GGCGCACTATATTTTGAAATGGAG 58.785 41.667 10.83 0.06 0.00 3.86
476 502 4.037446 GGGCGCACTATATTTTGAAATGGA 59.963 41.667 10.83 0.00 0.00 3.41
477 503 4.298332 GGGCGCACTATATTTTGAAATGG 58.702 43.478 10.83 0.00 0.00 3.16
478 504 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
479 505 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
480 506 2.223386 GCGGGCGCACTATATTTTGAAA 60.223 45.455 8.62 0.00 41.49 2.69
481 507 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
482 508 0.941542 GCGGGCGCACTATATTTTGA 59.058 50.000 8.62 0.00 41.49 2.69
483 509 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
484 510 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
485 511 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
499 525 4.697756 TGGACCTTGGGAAGCGCG 62.698 66.667 0.00 0.00 0.00 6.86
500 526 2.282180 TTGGACCTTGGGAAGCGC 60.282 61.111 0.00 0.00 0.00 5.92
501 527 0.537371 AAGTTGGACCTTGGGAAGCG 60.537 55.000 0.00 0.00 0.00 4.68
502 528 1.341209 CAAAGTTGGACCTTGGGAAGC 59.659 52.381 0.00 0.00 0.00 3.86
503 529 2.623416 GTCAAAGTTGGACCTTGGGAAG 59.377 50.000 0.00 0.00 0.00 3.46
504 530 2.661718 GTCAAAGTTGGACCTTGGGAA 58.338 47.619 0.00 0.00 0.00 3.97
505 531 2.358322 GTCAAAGTTGGACCTTGGGA 57.642 50.000 0.00 0.00 0.00 4.37
512 538 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
513 539 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
514 540 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
515 541 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
516 542 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
517 543 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
518 544 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
519 545 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
520 546 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
521 547 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
522 548 6.549061 GGTCTCGTTGGTTAAATTTATGGTC 58.451 40.000 0.00 0.00 0.00 4.02
523 549 5.122711 CGGTCTCGTTGGTTAAATTTATGGT 59.877 40.000 0.00 0.00 0.00 3.55
524 550 5.352016 TCGGTCTCGTTGGTTAAATTTATGG 59.648 40.000 0.00 0.00 37.69 2.74
525 551 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
526 552 6.091713 CAGTCGGTCTCGTTGGTTAAATTTAT 59.908 38.462 0.00 0.00 37.69 1.40
527 553 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
528 554 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
529 555 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
530 556 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
531 557 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
532 558 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
533 559 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
534 560 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
535 561 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
536 562 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
546 572 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
547 573 1.964373 TTTTTCTCCCGCCGCAGTC 60.964 57.895 0.00 0.00 0.00 3.51
548 574 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
588 614 9.961265 AAGTTATATCAGTGAATTCGTATTCGA 57.039 29.630 9.79 2.59 42.55 3.71
593 619 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
594 620 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
595 621 8.607459 AGAGCAAAAGTTATATCAGTGAATTCG 58.393 33.333 0.00 0.00 0.00 3.34
596 622 9.928236 GAGAGCAAAAGTTATATCAGTGAATTC 57.072 33.333 0.00 0.00 0.00 2.17
597 623 8.607459 CGAGAGCAAAAGTTATATCAGTGAATT 58.393 33.333 0.00 0.00 0.00 2.17
598 624 8.136057 CGAGAGCAAAAGTTATATCAGTGAAT 57.864 34.615 0.00 0.00 0.00 2.57
599 625 7.525688 CGAGAGCAAAAGTTATATCAGTGAA 57.474 36.000 0.00 0.00 0.00 3.18
618 644 0.596083 AAGATCGATTGCGGCGAGAG 60.596 55.000 12.98 0.00 41.49 3.20
619 645 0.871592 CAAGATCGATTGCGGCGAGA 60.872 55.000 12.98 0.00 41.49 4.04
620 646 0.871592 TCAAGATCGATTGCGGCGAG 60.872 55.000 12.98 0.00 41.49 5.03
621 647 0.249447 ATCAAGATCGATTGCGGCGA 60.249 50.000 12.98 0.00 42.48 5.54
622 648 1.388093 CTATCAAGATCGATTGCGGCG 59.612 52.381 0.51 0.51 38.28 6.46
623 649 2.408050 ACTATCAAGATCGATTGCGGC 58.592 47.619 0.00 0.00 38.28 6.53
624 650 6.525121 TTTAACTATCAAGATCGATTGCGG 57.475 37.500 0.00 0.00 38.28 5.69
625 651 8.993852 AAATTTAACTATCAAGATCGATTGCG 57.006 30.769 0.00 0.00 39.35 4.85
629 655 9.760077 ACCGTAAATTTAACTATCAAGATCGAT 57.240 29.630 0.00 0.00 0.00 3.59
630 656 9.241317 GACCGTAAATTTAACTATCAAGATCGA 57.759 33.333 0.00 0.00 0.00 3.59
631 657 9.027129 TGACCGTAAATTTAACTATCAAGATCG 57.973 33.333 0.00 0.00 0.00 3.69
641 667 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
642 668 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
643 669 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
644 670 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
645 671 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
646 672 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
647 673 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
648 674 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
649 675 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
650 676 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
651 677 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
652 678 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.00 36.83 4.79
653 679 1.264288 CCTCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
654 680 2.210116 TCCTCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
655 681 2.613026 TCCTCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
656 682 4.245660 TCTATCCTCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
657 683 4.537135 TCTATCCTCGTGCTTCAACTTT 57.463 40.909 0.00 0.00 0.00 2.66
658 684 4.220821 TCTTCTATCCTCGTGCTTCAACTT 59.779 41.667 0.00 0.00 0.00 2.66
659 685 3.764434 TCTTCTATCCTCGTGCTTCAACT 59.236 43.478 0.00 0.00 0.00 3.16
660 686 4.111375 TCTTCTATCCTCGTGCTTCAAC 57.889 45.455 0.00 0.00 0.00 3.18
661 687 4.748892 CTTCTTCTATCCTCGTGCTTCAA 58.251 43.478 0.00 0.00 0.00 2.69
662 688 3.429547 GCTTCTTCTATCCTCGTGCTTCA 60.430 47.826 0.00 0.00 0.00 3.02
663 689 3.120041 GCTTCTTCTATCCTCGTGCTTC 58.880 50.000 0.00 0.00 0.00 3.86
664 690 2.497675 TGCTTCTTCTATCCTCGTGCTT 59.502 45.455 0.00 0.00 0.00 3.91
665 691 2.103373 TGCTTCTTCTATCCTCGTGCT 58.897 47.619 0.00 0.00 0.00 4.40
666 692 2.159170 AGTGCTTCTTCTATCCTCGTGC 60.159 50.000 0.00 0.00 0.00 5.34
667 693 3.791973 AGTGCTTCTTCTATCCTCGTG 57.208 47.619 0.00 0.00 0.00 4.35
668 694 4.270834 TGTAGTGCTTCTTCTATCCTCGT 58.729 43.478 0.00 0.00 0.00 4.18
669 695 4.902443 TGTAGTGCTTCTTCTATCCTCG 57.098 45.455 0.00 0.00 0.00 4.63
670 696 6.478344 CACAATGTAGTGCTTCTTCTATCCTC 59.522 42.308 0.00 0.00 32.04 3.71
671 697 6.344500 CACAATGTAGTGCTTCTTCTATCCT 58.656 40.000 0.00 0.00 32.04 3.24
672 698 5.525378 CCACAATGTAGTGCTTCTTCTATCC 59.475 44.000 0.00 0.00 38.18 2.59
673 699 6.341316 TCCACAATGTAGTGCTTCTTCTATC 58.659 40.000 0.00 0.00 38.18 2.08
674 700 6.299805 TCCACAATGTAGTGCTTCTTCTAT 57.700 37.500 0.00 0.00 38.18 1.98
675 701 5.738619 TCCACAATGTAGTGCTTCTTCTA 57.261 39.130 0.00 0.00 38.18 2.10
676 702 4.623932 TCCACAATGTAGTGCTTCTTCT 57.376 40.909 0.00 0.00 38.18 2.85
677 703 5.392380 CCATTCCACAATGTAGTGCTTCTTC 60.392 44.000 0.00 0.00 38.22 2.87
678 704 4.460382 CCATTCCACAATGTAGTGCTTCTT 59.540 41.667 0.00 0.00 38.22 2.52
679 705 4.012374 CCATTCCACAATGTAGTGCTTCT 58.988 43.478 0.00 0.00 38.22 2.85
680 706 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
681 707 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
682 708 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
683 709 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
684 710 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
685 711 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
686 712 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
687 713 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
688 714 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
689 715 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
690 716 4.946160 TTTACTCCCTCCATTCCACAAT 57.054 40.909 0.00 0.00 0.00 2.71
691 717 4.599041 CATTTACTCCCTCCATTCCACAA 58.401 43.478 0.00 0.00 0.00 3.33
692 718 3.624707 GCATTTACTCCCTCCATTCCACA 60.625 47.826 0.00 0.00 0.00 4.17
693 719 2.952310 GCATTTACTCCCTCCATTCCAC 59.048 50.000 0.00 0.00 0.00 4.02
694 720 2.580322 TGCATTTACTCCCTCCATTCCA 59.420 45.455 0.00 0.00 0.00 3.53
695 721 3.297134 TGCATTTACTCCCTCCATTCC 57.703 47.619 0.00 0.00 0.00 3.01
696 722 4.706962 ACTTTGCATTTACTCCCTCCATTC 59.293 41.667 0.00 0.00 0.00 2.67
697 723 4.463891 CACTTTGCATTTACTCCCTCCATT 59.536 41.667 0.00 0.00 0.00 3.16
698 724 4.019174 CACTTTGCATTTACTCCCTCCAT 58.981 43.478 0.00 0.00 0.00 3.41
699 725 3.420893 CACTTTGCATTTACTCCCTCCA 58.579 45.455 0.00 0.00 0.00 3.86
700 726 2.755103 CCACTTTGCATTTACTCCCTCC 59.245 50.000 0.00 0.00 0.00 4.30
701 727 2.164422 GCCACTTTGCATTTACTCCCTC 59.836 50.000 0.00 0.00 0.00 4.30
702 728 2.171003 GCCACTTTGCATTTACTCCCT 58.829 47.619 0.00 0.00 0.00 4.20
703 729 1.892474 TGCCACTTTGCATTTACTCCC 59.108 47.619 0.00 0.00 36.04 4.30
704 730 2.558359 AGTGCCACTTTGCATTTACTCC 59.442 45.455 0.00 0.00 44.30 3.85
705 731 3.923017 AGTGCCACTTTGCATTTACTC 57.077 42.857 0.00 0.00 44.30 2.59
706 732 4.023193 GTGTAGTGCCACTTTGCATTTACT 60.023 41.667 1.02 0.00 44.30 2.24
707 733 4.023193 AGTGTAGTGCCACTTTGCATTTAC 60.023 41.667 1.02 0.00 42.99 2.01
708 734 4.141287 AGTGTAGTGCCACTTTGCATTTA 58.859 39.130 1.02 0.00 42.99 1.40
709 735 2.958355 AGTGTAGTGCCACTTTGCATTT 59.042 40.909 1.02 0.00 42.99 2.32
710 736 2.586425 AGTGTAGTGCCACTTTGCATT 58.414 42.857 1.02 0.00 42.99 3.56
720 746 2.457366 AAGCTGTGTAGTGTAGTGCC 57.543 50.000 0.00 0.00 0.00 5.01
765 795 4.222145 AGGCCGTGAGAGTTAACAAATCTA 59.778 41.667 8.61 0.00 35.72 1.98
785 815 1.478137 CGTCATAGCTTACGTCAGGC 58.522 55.000 0.00 0.00 34.48 4.85
808 838 2.797156 CAAAACTGGTCTCACTCACGAG 59.203 50.000 0.00 0.00 0.00 4.18
861 891 3.276857 ACTGAATGTGCTCTGCCTATTG 58.723 45.455 0.00 0.00 0.00 1.90
895 927 3.585732 GGGGCTGCACTATTTATAGGGTA 59.414 47.826 0.21 0.00 36.18 3.69
896 928 2.375509 GGGGCTGCACTATTTATAGGGT 59.624 50.000 0.21 0.00 36.18 4.34
916 950 0.312416 GACGTGATCGATCCTGGAGG 59.688 60.000 22.31 11.55 40.62 4.30
1414 1454 1.218875 TTGATTGCGTCGTTGAGCGT 61.219 50.000 0.00 0.00 42.13 5.07
1702 1742 1.652012 GTCTCTCGATGAGCTCCGG 59.348 63.158 12.15 0.00 42.38 5.14
1856 1896 1.372087 CCAAATGAGCGAGGTCAGGC 61.372 60.000 10.76 0.00 0.00 4.85
1857 1897 1.372087 GCCAAATGAGCGAGGTCAGG 61.372 60.000 10.76 7.70 0.00 3.86
2411 2469 5.013079 TCTCACCAGAAAATACCACTCATGT 59.987 40.000 0.00 0.00 0.00 3.21
2427 2485 9.003658 AGTTTGACAGTTTATTTATCTCACCAG 57.996 33.333 0.00 0.00 0.00 4.00
2487 2545 1.839354 TGCTCTGCCCATCAGTCATAA 59.161 47.619 0.00 0.00 43.32 1.90
2493 2551 1.158484 CGACATGCTCTGCCCATCAG 61.158 60.000 0.00 0.00 44.21 2.90
2494 2552 1.153309 CGACATGCTCTGCCCATCA 60.153 57.895 0.00 0.00 0.00 3.07
2495 2553 0.104855 TACGACATGCTCTGCCCATC 59.895 55.000 0.00 0.00 0.00 3.51
2496 2554 0.761187 ATACGACATGCTCTGCCCAT 59.239 50.000 0.00 0.00 0.00 4.00
2497 2555 1.068588 GTATACGACATGCTCTGCCCA 59.931 52.381 0.00 0.00 0.00 5.36
2499 2557 2.802787 AGTATACGACATGCTCTGCC 57.197 50.000 0.00 0.00 0.00 4.85
2514 2572 7.917505 CGTAATTCAGGGTAAGTTTCGTAGTAT 59.082 37.037 0.00 0.00 0.00 2.12
2515 2573 7.094377 ACGTAATTCAGGGTAAGTTTCGTAGTA 60.094 37.037 0.00 0.00 0.00 1.82
2516 2574 6.095377 CGTAATTCAGGGTAAGTTTCGTAGT 58.905 40.000 0.00 0.00 0.00 2.73
2517 2575 6.034256 CACGTAATTCAGGGTAAGTTTCGTAG 59.966 42.308 0.00 0.00 0.00 3.51
2525 2583 3.857052 TCAGCACGTAATTCAGGGTAAG 58.143 45.455 0.00 0.00 0.00 2.34
2551 2609 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2572 3126 3.118629 TGCCTCTGTGACATACCTCATTC 60.119 47.826 0.00 0.00 0.00 2.67
2574 3128 2.470990 TGCCTCTGTGACATACCTCAT 58.529 47.619 0.00 0.00 0.00 2.90
2576 3130 3.550437 AATGCCTCTGTGACATACCTC 57.450 47.619 0.00 0.00 0.00 3.85
2600 3161 6.166984 ACTATTCGGTCATGACAGATCATT 57.833 37.500 26.01 14.97 43.40 2.57
2638 3204 2.224549 CGTCGCTAATGACCAACCAAAA 59.775 45.455 0.00 0.00 35.40 2.44
2661 3227 1.670811 GATGGCGGGTGAACAATGTAG 59.329 52.381 0.00 0.00 0.00 2.74
2674 3248 7.277760 TCACTAATGATAATTAATCGATGGCGG 59.722 37.037 0.00 0.00 37.42 6.13
2703 3277 7.913789 AGAATGTAACCTGTAAACCATCACTA 58.086 34.615 0.00 0.00 0.00 2.74
2704 3278 6.779860 AGAATGTAACCTGTAAACCATCACT 58.220 36.000 0.00 0.00 0.00 3.41
2705 3279 7.174253 TGAAGAATGTAACCTGTAAACCATCAC 59.826 37.037 0.00 0.00 0.00 3.06
2707 3281 7.174253 TGTGAAGAATGTAACCTGTAAACCATC 59.826 37.037 0.00 0.00 0.00 3.51
2708 3282 7.001674 TGTGAAGAATGTAACCTGTAAACCAT 58.998 34.615 0.00 0.00 0.00 3.55
2709 3283 6.358178 TGTGAAGAATGTAACCTGTAAACCA 58.642 36.000 0.00 0.00 0.00 3.67
2711 3285 6.801862 GCATGTGAAGAATGTAACCTGTAAAC 59.198 38.462 0.00 0.00 0.00 2.01
2712 3286 6.072175 GGCATGTGAAGAATGTAACCTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
2713 3287 5.414454 GGCATGTGAAGAATGTAACCTGTAA 59.586 40.000 0.00 0.00 0.00 2.41
2714 3288 4.941263 GGCATGTGAAGAATGTAACCTGTA 59.059 41.667 0.00 0.00 0.00 2.74
2715 3289 3.758554 GGCATGTGAAGAATGTAACCTGT 59.241 43.478 0.00 0.00 0.00 4.00
2716 3290 3.758023 TGGCATGTGAAGAATGTAACCTG 59.242 43.478 0.00 0.00 0.00 4.00
2717 3291 3.758554 GTGGCATGTGAAGAATGTAACCT 59.241 43.478 0.00 0.00 0.00 3.50
2718 3292 3.119495 GGTGGCATGTGAAGAATGTAACC 60.119 47.826 0.00 0.00 0.00 2.85
2736 3310 6.208599 ACCTTAAACATGACAGTTATTGGTGG 59.791 38.462 0.00 0.00 31.11 4.61
2763 3337 9.082313 ACTATTGTGAGAAAACTTTGATTCCAT 57.918 29.630 0.00 0.00 0.00 3.41
2799 3373 8.055279 TGACCCAAATTCTAAATTCAGATGAC 57.945 34.615 0.00 0.00 0.00 3.06
2802 3376 8.408601 CGATTGACCCAAATTCTAAATTCAGAT 58.591 33.333 0.00 0.00 0.00 2.90
2803 3377 7.609918 TCGATTGACCCAAATTCTAAATTCAGA 59.390 33.333 0.00 0.00 0.00 3.27
2805 3379 7.695480 TCGATTGACCCAAATTCTAAATTCA 57.305 32.000 0.00 0.00 0.00 2.57
2806 3380 9.586435 AAATCGATTGACCCAAATTCTAAATTC 57.414 29.630 12.25 0.00 0.00 2.17
2807 3381 9.942850 AAAATCGATTGACCCAAATTCTAAATT 57.057 25.926 12.25 0.00 0.00 1.82
2808 3382 9.586435 GAAAATCGATTGACCCAAATTCTAAAT 57.414 29.630 12.25 0.00 0.00 1.40
2809 3383 8.580720 TGAAAATCGATTGACCCAAATTCTAAA 58.419 29.630 12.25 0.00 0.00 1.85
2810 3384 8.116651 TGAAAATCGATTGACCCAAATTCTAA 57.883 30.769 12.25 0.00 0.00 2.10
2811 3385 7.695480 TGAAAATCGATTGACCCAAATTCTA 57.305 32.000 12.25 0.00 0.00 2.10
2812 3386 6.588719 TGAAAATCGATTGACCCAAATTCT 57.411 33.333 12.25 0.00 0.00 2.40
2815 3389 6.071447 TCACATGAAAATCGATTGACCCAAAT 60.071 34.615 12.25 0.00 0.00 2.32
2821 3395 6.182039 TCCTTCACATGAAAATCGATTGAC 57.818 37.500 12.25 9.40 33.07 3.18
2823 3397 6.032094 CCTTCCTTCACATGAAAATCGATTG 58.968 40.000 12.25 1.55 33.07 2.67
2828 3402 6.331369 TGTTCCTTCCTTCACATGAAAATC 57.669 37.500 0.00 0.00 33.07 2.17
2836 3410 1.476110 CCGGTTGTTCCTTCCTTCACA 60.476 52.381 0.00 0.00 0.00 3.58
2846 3420 1.002502 CCTTCCCTCCGGTTGTTCC 60.003 63.158 0.00 0.00 0.00 3.62
2848 3422 0.400594 CTTCCTTCCCTCCGGTTGTT 59.599 55.000 0.00 0.00 0.00 2.83
2849 3423 0.473117 TCTTCCTTCCCTCCGGTTGT 60.473 55.000 0.00 0.00 0.00 3.32
2850 3424 0.912486 ATCTTCCTTCCCTCCGGTTG 59.088 55.000 0.00 0.00 0.00 3.77
2851 3425 1.205055 GATCTTCCTTCCCTCCGGTT 58.795 55.000 0.00 0.00 0.00 4.44
2852 3426 1.043673 CGATCTTCCTTCCCTCCGGT 61.044 60.000 0.00 0.00 0.00 5.28
2853 3427 1.742768 CGATCTTCCTTCCCTCCGG 59.257 63.158 0.00 0.00 0.00 5.14
2854 3428 1.068250 GCGATCTTCCTTCCCTCCG 59.932 63.158 0.00 0.00 0.00 4.63
2855 3429 1.338136 TGGCGATCTTCCTTCCCTCC 61.338 60.000 0.00 0.00 0.00 4.30
2856 3430 0.761802 ATGGCGATCTTCCTTCCCTC 59.238 55.000 0.00 0.00 0.00 4.30
2857 3431 1.216990 AATGGCGATCTTCCTTCCCT 58.783 50.000 0.00 0.00 0.00 4.20
2858 3432 2.930826 TAATGGCGATCTTCCTTCCC 57.069 50.000 0.00 0.00 0.00 3.97
2859 3433 5.491982 ACATATAATGGCGATCTTCCTTCC 58.508 41.667 0.00 0.00 33.60 3.46
2860 3434 7.819900 ACTTACATATAATGGCGATCTTCCTTC 59.180 37.037 0.00 0.00 33.60 3.46
2861 3435 7.680730 ACTTACATATAATGGCGATCTTCCTT 58.319 34.615 0.00 0.00 33.60 3.36
2862 3436 7.246171 ACTTACATATAATGGCGATCTTCCT 57.754 36.000 0.00 0.00 33.60 3.36
2863 3437 6.253727 CGACTTACATATAATGGCGATCTTCC 59.746 42.308 0.00 0.00 33.60 3.46
2864 3438 6.237595 GCGACTTACATATAATGGCGATCTTC 60.238 42.308 0.00 0.00 33.60 2.87
2865 3439 5.577164 GCGACTTACATATAATGGCGATCTT 59.423 40.000 0.00 0.00 33.60 2.40
2866 3440 5.103000 GCGACTTACATATAATGGCGATCT 58.897 41.667 0.00 0.00 33.60 2.75
2867 3441 4.267928 GGCGACTTACATATAATGGCGATC 59.732 45.833 0.00 0.00 33.60 3.69
2868 3442 4.181578 GGCGACTTACATATAATGGCGAT 58.818 43.478 0.00 0.00 33.60 4.58
2869 3443 3.581755 GGCGACTTACATATAATGGCGA 58.418 45.455 0.00 0.00 33.60 5.54
2870 3444 2.671396 GGGCGACTTACATATAATGGCG 59.329 50.000 0.00 0.00 33.60 5.69
2871 3445 2.671396 CGGGCGACTTACATATAATGGC 59.329 50.000 0.00 0.00 33.60 4.40
2872 3446 4.182693 TCGGGCGACTTACATATAATGG 57.817 45.455 0.00 0.00 33.60 3.16
2873 3447 6.721571 AATTCGGGCGACTTACATATAATG 57.278 37.500 0.00 0.00 0.00 1.90
2874 3448 8.308931 TCTAAATTCGGGCGACTTACATATAAT 58.691 33.333 0.00 0.00 0.00 1.28
2875 3449 7.660112 TCTAAATTCGGGCGACTTACATATAA 58.340 34.615 0.00 0.00 0.00 0.98
2876 3450 7.218228 TCTAAATTCGGGCGACTTACATATA 57.782 36.000 0.00 0.00 0.00 0.86
2877 3451 6.092955 TCTAAATTCGGGCGACTTACATAT 57.907 37.500 0.00 0.00 0.00 1.78
2878 3452 5.518848 TCTAAATTCGGGCGACTTACATA 57.481 39.130 0.00 0.00 0.00 2.29
2879 3453 4.395959 TCTAAATTCGGGCGACTTACAT 57.604 40.909 0.00 0.00 0.00 2.29
2880 3454 3.872511 TCTAAATTCGGGCGACTTACA 57.127 42.857 0.00 0.00 0.00 2.41
2881 3455 5.048507 AGATTCTAAATTCGGGCGACTTAC 58.951 41.667 0.00 0.00 0.00 2.34
2882 3456 5.047847 CAGATTCTAAATTCGGGCGACTTA 58.952 41.667 0.00 0.00 0.00 2.24
2883 3457 3.871594 CAGATTCTAAATTCGGGCGACTT 59.128 43.478 0.00 0.00 0.00 3.01
2884 3458 3.458189 CAGATTCTAAATTCGGGCGACT 58.542 45.455 0.00 0.00 0.00 4.18
2885 3459 2.544267 CCAGATTCTAAATTCGGGCGAC 59.456 50.000 0.00 0.00 0.00 5.19
2886 3460 2.484770 CCCAGATTCTAAATTCGGGCGA 60.485 50.000 0.00 0.00 0.00 5.54
2887 3461 1.873591 CCCAGATTCTAAATTCGGGCG 59.126 52.381 0.00 0.00 0.00 6.13
2888 3462 2.879026 GACCCAGATTCTAAATTCGGGC 59.121 50.000 4.76 0.00 35.49 6.13
2889 3463 4.150897 TGACCCAGATTCTAAATTCGGG 57.849 45.455 3.53 3.53 38.23 5.14
2890 3464 5.050091 CGATTGACCCAGATTCTAAATTCGG 60.050 44.000 0.00 0.00 0.00 4.30
2891 3465 5.753438 TCGATTGACCCAGATTCTAAATTCG 59.247 40.000 0.00 0.00 0.00 3.34
2892 3466 7.736447 ATCGATTGACCCAGATTCTAAATTC 57.264 36.000 0.00 0.00 0.00 2.17
2893 3467 8.525290 AAATCGATTGACCCAGATTCTAAATT 57.475 30.769 12.25 0.00 32.79 1.82
2894 3468 8.525290 AAAATCGATTGACCCAGATTCTAAAT 57.475 30.769 12.25 0.00 32.79 1.40
2895 3469 7.829211 AGAAAATCGATTGACCCAGATTCTAAA 59.171 33.333 12.25 0.00 32.79 1.85
2896 3470 7.338710 AGAAAATCGATTGACCCAGATTCTAA 58.661 34.615 12.25 0.00 32.79 2.10
2897 3471 6.889198 AGAAAATCGATTGACCCAGATTCTA 58.111 36.000 12.25 0.00 32.79 2.10
2898 3472 5.749462 AGAAAATCGATTGACCCAGATTCT 58.251 37.500 12.25 11.03 32.79 2.40
2899 3473 6.054035 GAGAAAATCGATTGACCCAGATTC 57.946 41.667 12.25 8.91 32.79 2.52
2922 3496 1.203313 GGTTGTTCCTTCGTTCGCG 59.797 57.895 0.00 0.00 42.98 5.87
2923 3497 1.203313 CGGTTGTTCCTTCGTTCGC 59.797 57.895 0.00 0.00 0.00 4.70
2924 3498 0.598158 TCCGGTTGTTCCTTCGTTCG 60.598 55.000 0.00 0.00 0.00 3.95
2925 3499 1.145803 CTCCGGTTGTTCCTTCGTTC 58.854 55.000 0.00 0.00 0.00 3.95
2926 3500 0.250166 CCTCCGGTTGTTCCTTCGTT 60.250 55.000 0.00 0.00 0.00 3.85
2927 3501 1.117142 TCCTCCGGTTGTTCCTTCGT 61.117 55.000 0.00 0.00 0.00 3.85
2928 3502 0.389948 CTCCTCCGGTTGTTCCTTCG 60.390 60.000 0.00 0.00 0.00 3.79
2929 3503 0.036294 CCTCCTCCGGTTGTTCCTTC 60.036 60.000 0.00 0.00 0.00 3.46
2930 3504 1.489560 CCCTCCTCCGGTTGTTCCTT 61.490 60.000 0.00 0.00 0.00 3.36
2931 3505 1.918800 CCCTCCTCCGGTTGTTCCT 60.919 63.158 0.00 0.00 0.00 3.36
2932 3506 2.669240 CCCTCCTCCGGTTGTTCC 59.331 66.667 0.00 0.00 0.00 3.62
2933 3507 1.486145 TTCCCCTCCTCCGGTTGTTC 61.486 60.000 0.00 0.00 0.00 3.18
2934 3508 1.462627 TTCCCCTCCTCCGGTTGTT 60.463 57.895 0.00 0.00 0.00 2.83
2935 3509 1.918800 CTTCCCCTCCTCCGGTTGT 60.919 63.158 0.00 0.00 0.00 3.32
2936 3510 2.670148 CCTTCCCCTCCTCCGGTTG 61.670 68.421 0.00 0.00 0.00 3.77
2937 3511 2.285442 CCTTCCCCTCCTCCGGTT 60.285 66.667 0.00 0.00 0.00 4.44
2938 3512 3.281787 TCCTTCCCCTCCTCCGGT 61.282 66.667 0.00 0.00 0.00 5.28
2946 3520 0.264955 TTCGGCTATCTCCTTCCCCT 59.735 55.000 0.00 0.00 0.00 4.79
2947 3521 0.682292 CTTCGGCTATCTCCTTCCCC 59.318 60.000 0.00 0.00 0.00 4.81
2948 3522 1.705873 TCTTCGGCTATCTCCTTCCC 58.294 55.000 0.00 0.00 0.00 3.97
2959 3533 2.664081 CCAGAGGGCTTCTTCGGCT 61.664 63.158 0.00 0.00 32.41 5.52
2960 3534 1.977293 ATCCAGAGGGCTTCTTCGGC 61.977 60.000 0.00 0.00 32.41 5.54
2964 3538 4.212070 AGATAGATCCAGAGGGCTTCTT 57.788 45.455 0.00 0.00 32.41 2.52
2978 3552 2.499289 CGCCTGCCATCCTAAGATAGAT 59.501 50.000 0.00 0.00 0.00 1.98
3003 3651 3.386726 CCACACCCCAAGATAGATAACGA 59.613 47.826 0.00 0.00 0.00 3.85
3005 3653 3.458487 ACCCACACCCCAAGATAGATAAC 59.542 47.826 0.00 0.00 0.00 1.89
3033 3681 3.721706 CTGCACACCTCCCTCCCC 61.722 72.222 0.00 0.00 0.00 4.81
3039 3698 4.065110 GTGAACCTGCACACCTCC 57.935 61.111 0.00 0.00 38.63 4.30
3058 3717 2.737252 GGCGATGATCGGTTTCTTATCC 59.263 50.000 17.27 1.83 40.84 2.59
3071 3730 1.276421 CCTTCTAATCCCGGCGATGAT 59.724 52.381 9.30 7.32 0.00 2.45
3077 3736 1.270893 GGTCATCCTTCTAATCCCGGC 60.271 57.143 0.00 0.00 0.00 6.13
3083 3742 0.765510 GCCCCGGTCATCCTTCTAAT 59.234 55.000 0.00 0.00 0.00 1.73
3099 3758 3.683937 ATTGTGTTGCCGCTGCCC 61.684 61.111 0.00 0.00 36.33 5.36
3103 3763 1.200716 CTCAATCATTGTGTTGCCGCT 59.799 47.619 0.00 0.00 0.00 5.52
3116 3776 3.089874 CCGCCCTCCCCTCAATCA 61.090 66.667 0.00 0.00 0.00 2.57
3118 3778 2.770048 CTCCGCCCTCCCCTCAAT 60.770 66.667 0.00 0.00 0.00 2.57
3134 3794 2.113986 GGTGACAGCCTTGCCACT 59.886 61.111 0.00 0.00 37.76 4.00
3140 3800 1.598130 GTGCTTCGGTGACAGCCTT 60.598 57.895 0.00 0.00 0.00 4.35
3151 3811 2.281070 ACTGCTGGTGGTGCTTCG 60.281 61.111 0.00 0.00 0.00 3.79
3166 3826 3.760035 CTGTCTACGCCGCCCACT 61.760 66.667 0.00 0.00 0.00 4.00
3180 3840 4.778143 GCCGGCCGAATCACCTGT 62.778 66.667 30.73 0.00 0.00 4.00
3254 3997 5.776173 ACCTGACATAACTTCTATCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
3255 3998 5.755861 GCAACCTGACATAACTTCTATCTCC 59.244 44.000 0.00 0.00 0.00 3.71
3256 3999 6.578023 AGCAACCTGACATAACTTCTATCTC 58.422 40.000 0.00 0.00 0.00 2.75
3266 4009 5.538053 TGAATGGAAAAGCAACCTGACATAA 59.462 36.000 0.00 0.00 0.00 1.90
3268 4011 3.896888 TGAATGGAAAAGCAACCTGACAT 59.103 39.130 0.00 0.00 0.00 3.06
3273 4016 2.035832 CCGTTGAATGGAAAAGCAACCT 59.964 45.455 0.00 0.00 37.83 3.50
3305 4048 6.409704 TGACTGAATTTAGAATCTGGGTCAG 58.590 40.000 3.94 11.13 37.77 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.