Multiple sequence alignment - TraesCS3A01G127200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G127200 chr3A 100.000 6253 0 0 1605 7857 102616693 102622945 0.000000e+00 11548.0
1 TraesCS3A01G127200 chr3A 100.000 1026 0 0 1 1026 102615089 102616114 0.000000e+00 1895.0
2 TraesCS3A01G127200 chr3A 85.311 177 16 5 7153 7327 310692088 310691920 2.910000e-39 174.0
3 TraesCS3A01G127200 chr3A 85.976 164 13 6 7153 7316 582283215 582283368 4.880000e-37 167.0
4 TraesCS3A01G127200 chr3A 83.163 196 14 3 477 661 102615036 102614849 2.270000e-35 161.0
5 TraesCS3A01G127200 chr3A 100.000 29 0 0 7124 7152 17516779 17516807 4.000000e-03 54.7
6 TraesCS3A01G127200 chr3D 98.399 2436 36 3 3171 5604 86334895 86337329 0.000000e+00 4279.0
7 TraesCS3A01G127200 chr3D 95.303 2065 51 15 5601 7647 86338197 86340233 0.000000e+00 3234.0
8 TraesCS3A01G127200 chr3D 94.448 1387 59 10 1607 2986 86333535 86334910 0.000000e+00 2119.0
9 TraesCS3A01G127200 chr3D 92.355 327 7 6 656 972 86332769 86333087 4.320000e-122 449.0
10 TraesCS3A01G127200 chr3D 84.746 177 18 6 7152 7326 199109929 199109760 1.360000e-37 169.0
11 TraesCS3A01G127200 chr3D 85.890 163 15 5 7152 7314 315480424 315480578 4.880000e-37 167.0
12 TraesCS3A01G127200 chr3D 84.756 164 15 5 7153 7316 441388667 441388820 1.060000e-33 156.0
13 TraesCS3A01G127200 chr3B 96.413 1840 51 8 3770 5604 136443821 136445650 0.000000e+00 3018.0
14 TraesCS3A01G127200 chr3B 94.300 1386 60 11 1607 2986 136441679 136443051 0.000000e+00 2104.0
15 TraesCS3A01G127200 chr3B 94.497 1272 47 9 5994 7264 136446347 136447596 0.000000e+00 1940.0
16 TraesCS3A01G127200 chr3B 97.529 607 12 1 3171 3777 136443036 136443639 0.000000e+00 1035.0
17 TraesCS3A01G127200 chr3B 94.920 374 9 4 656 1026 136441262 136441628 1.900000e-160 577.0
18 TraesCS3A01G127200 chr3B 82.639 576 65 18 7306 7850 136447596 136448167 1.980000e-130 477.0
19 TraesCS3A01G127200 chr1B 95.293 1381 52 8 1607 2986 372912044 372913412 0.000000e+00 2178.0
20 TraesCS3A01G127200 chr1B 98.106 264 5 0 3171 3434 372913397 372913660 2.000000e-125 460.0
21 TraesCS3A01G127200 chr1B 92.130 216 12 2 811 1026 372911786 372911996 4.610000e-77 300.0
22 TraesCS3A01G127200 chr7B 95.996 974 33 3 2017 2986 326392923 326393894 0.000000e+00 1578.0
23 TraesCS3A01G127200 chr7B 93.084 347 18 4 1607 1952 326392590 326392931 3.270000e-138 503.0
24 TraesCS3A01G127200 chr7B 98.876 267 3 0 3171 3437 326393879 326394145 1.980000e-130 477.0
25 TraesCS3A01G127200 chr7B 98.429 191 2 1 2981 3170 331021260 331021450 1.260000e-87 335.0
26 TraesCS3A01G127200 chr7B 93.981 216 8 2 811 1026 326392332 326392542 9.840000e-84 322.0
27 TraesCS3A01G127200 chr2B 96.905 840 17 4 2147 2986 189504489 189503659 0.000000e+00 1399.0
28 TraesCS3A01G127200 chr2B 88.386 663 66 2 9 660 662885504 662884842 0.000000e+00 787.0
29 TraesCS3A01G127200 chr2B 94.421 484 23 4 1679 2161 189512082 189511602 0.000000e+00 741.0
30 TraesCS3A01G127200 chr2B 99.251 267 2 0 3171 3437 189503674 189503408 4.260000e-132 483.0
31 TraesCS3A01G127200 chr2B 85.043 468 52 8 2527 2986 756033931 756033474 2.000000e-125 460.0
32 TraesCS3A01G127200 chr2B 98.429 191 1 2 2987 3175 409336563 409336373 1.260000e-87 335.0
33 TraesCS3A01G127200 chr2B 93.548 217 9 2 810 1026 189512390 189512179 1.270000e-82 318.0
34 TraesCS3A01G127200 chr2B 86.667 195 15 5 477 660 662885562 662885756 1.030000e-48 206.0
35 TraesCS3A01G127200 chr2B 98.039 51 1 0 2250 2300 756050330 756050280 1.090000e-13 89.8
36 TraesCS3A01G127200 chr4B 88.855 664 60 3 9 660 43211239 43211900 0.000000e+00 804.0
37 TraesCS3A01G127200 chr4B 83.505 582 92 4 6237 6816 322691641 322692220 2.490000e-149 540.0
38 TraesCS3A01G127200 chr4B 82.131 582 100 4 6237 6816 322770131 322770710 5.480000e-136 496.0
39 TraesCS3A01G127200 chr4B 99.462 186 1 0 2987 3172 455621448 455621633 9.770000e-89 339.0
40 TraesCS3A01G127200 chr4B 85.235 298 43 1 4715 5012 322669468 322669764 9.910000e-79 305.0
41 TraesCS3A01G127200 chr4B 84.228 298 46 1 4715 5012 322744093 322744389 9.980000e-74 289.0
42 TraesCS3A01G127200 chr4B 86.667 195 15 5 477 660 43211181 43210987 1.030000e-48 206.0
43 TraesCS3A01G127200 chr4B 80.132 151 29 1 4441 4590 322743871 322744021 2.320000e-20 111.0
44 TraesCS3A01G127200 chr4A 86.527 668 66 13 4 660 519262951 519263605 0.000000e+00 713.0
45 TraesCS3A01G127200 chr4A 83.604 555 83 8 6237 6787 342457233 342457783 1.510000e-141 514.0
46 TraesCS3A01G127200 chr4A 97.959 196 1 3 2978 3170 674757708 674757903 3.510000e-88 337.0
47 TraesCS3A01G127200 chr4A 85.517 290 42 0 4715 5004 342447007 342447296 3.560000e-78 303.0
48 TraesCS3A01G127200 chr4A 87.179 195 14 1 477 660 519262898 519262704 2.220000e-50 211.0
49 TraesCS3A01G127200 chr4A 80.829 193 35 2 5406 5597 342448389 342448580 4.910000e-32 150.0
50 TraesCS3A01G127200 chr4A 81.119 143 27 0 4448 4590 342446792 342446934 1.790000e-21 115.0
51 TraesCS3A01G127200 chr6D 87.193 570 52 10 2427 2986 438004020 438003462 5.170000e-176 628.0
52 TraesCS3A01G127200 chr2D 87.432 549 53 10 2375 2923 605355301 605355833 1.120000e-172 617.0
53 TraesCS3A01G127200 chr2D 87.109 543 54 11 2381 2923 151662784 151662258 1.130000e-167 601.0
54 TraesCS3A01G127200 chr2D 90.196 51 5 0 6073 6123 79050913 79050863 5.090000e-07 67.6
55 TraesCS3A01G127200 chr2D 100.000 29 0 0 7124 7152 101695454 101695426 4.000000e-03 54.7
56 TraesCS3A01G127200 chr2D 100.000 29 0 0 7124 7152 548076842 548076870 4.000000e-03 54.7
57 TraesCS3A01G127200 chr7D 87.067 549 55 10 2375 2923 6716802 6717334 2.420000e-169 606.0
58 TraesCS3A01G127200 chr7D 83.721 172 18 4 7152 7322 265692987 265692825 3.800000e-33 154.0
59 TraesCS3A01G127200 chr7D 86.747 83 9 2 2298 2379 13488755 13488836 3.020000e-14 91.6
60 TraesCS3A01G127200 chr7D 90.323 62 6 0 7564 7625 171642099 171642038 1.820000e-11 82.4
61 TraesCS3A01G127200 chr7D 100.000 29 0 0 7124 7152 626135656 626135684 4.000000e-03 54.7
62 TraesCS3A01G127200 chr4D 82.990 582 95 4 6237 6816 179847918 179847339 2.510000e-144 523.0
63 TraesCS3A01G127200 chr4D 99.459 185 1 0 2987 3171 478512185 478512369 3.510000e-88 337.0
64 TraesCS3A01G127200 chr4D 85.570 298 42 1 4715 5012 179862033 179861737 2.130000e-80 311.0
65 TraesCS3A01G127200 chr4D 82.320 181 30 2 5418 5597 179860647 179860468 1.060000e-33 156.0
66 TraesCS3A01G127200 chr4D 80.405 148 28 1 4444 4590 179862253 179862106 2.320000e-20 111.0
67 TraesCS3A01G127200 chr4D 87.342 79 10 0 2298 2376 320027052 320026974 3.020000e-14 91.6
68 TraesCS3A01G127200 chr7A 80.918 697 62 16 4 661 23182879 23183543 1.190000e-132 484.0
69 TraesCS3A01G127200 chr7A 99.462 186 1 0 2987 3172 105168991 105168806 9.770000e-89 339.0
70 TraesCS3A01G127200 chr7A 94.690 113 6 0 536 648 23182755 23182643 8.100000e-40 176.0
71 TraesCS3A01G127200 chr1A 99.462 186 1 0 2987 3172 583789133 583789318 9.770000e-89 339.0
72 TraesCS3A01G127200 chr5D 99.459 185 1 0 2987 3171 50385990 50386174 3.510000e-88 337.0
73 TraesCS3A01G127200 chr5D 100.000 28 0 0 998 1025 127878661 127878688 1.400000e-02 52.8
74 TraesCS3A01G127200 chr5B 99.459 185 1 0 2986 3170 214934921 214934737 3.510000e-88 337.0
75 TraesCS3A01G127200 chr5B 88.372 86 9 1 2291 2376 262050953 262051037 1.390000e-17 102.0
76 TraesCS3A01G127200 chr6A 85.890 163 12 6 7153 7315 184388177 184388328 6.310000e-36 163.0
77 TraesCS3A01G127200 chr2A 86.585 82 11 0 2294 2375 775976660 775976741 3.020000e-14 91.6
78 TraesCS3A01G127200 chr5A 97.500 40 1 0 7112 7151 491288430 491288469 1.410000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G127200 chr3A 102615089 102622945 7856 False 6721.500000 11548 100.000000 1 7857 2 chr3A.!!$F3 7856
1 TraesCS3A01G127200 chr3D 86332769 86340233 7464 False 2520.250000 4279 95.126250 656 7647 4 chr3D.!!$F3 6991
2 TraesCS3A01G127200 chr3B 136441262 136448167 6905 False 1525.166667 3018 93.383000 656 7850 6 chr3B.!!$F1 7194
3 TraesCS3A01G127200 chr1B 372911786 372913660 1874 False 979.333333 2178 95.176333 811 3434 3 chr1B.!!$F1 2623
4 TraesCS3A01G127200 chr7B 326392332 326394145 1813 False 720.000000 1578 95.484250 811 3437 4 chr7B.!!$F2 2626
5 TraesCS3A01G127200 chr2B 189503408 189504489 1081 True 941.000000 1399 98.078000 2147 3437 2 chr2B.!!$R5 1290
6 TraesCS3A01G127200 chr2B 662884842 662885504 662 True 787.000000 787 88.386000 9 660 1 chr2B.!!$R2 651
7 TraesCS3A01G127200 chr2B 189511602 189512390 788 True 529.500000 741 93.984500 810 2161 2 chr2B.!!$R6 1351
8 TraesCS3A01G127200 chr4B 43211239 43211900 661 False 804.000000 804 88.855000 9 660 1 chr4B.!!$F1 651
9 TraesCS3A01G127200 chr4B 322691641 322692220 579 False 540.000000 540 83.505000 6237 6816 1 chr4B.!!$F3 579
10 TraesCS3A01G127200 chr4B 322770131 322770710 579 False 496.000000 496 82.131000 6237 6816 1 chr4B.!!$F4 579
11 TraesCS3A01G127200 chr4A 519262951 519263605 654 False 713.000000 713 86.527000 4 660 1 chr4A.!!$F2 656
12 TraesCS3A01G127200 chr4A 342457233 342457783 550 False 514.000000 514 83.604000 6237 6787 1 chr4A.!!$F1 550
13 TraesCS3A01G127200 chr6D 438003462 438004020 558 True 628.000000 628 87.193000 2427 2986 1 chr6D.!!$R1 559
14 TraesCS3A01G127200 chr2D 605355301 605355833 532 False 617.000000 617 87.432000 2375 2923 1 chr2D.!!$F2 548
15 TraesCS3A01G127200 chr2D 151662258 151662784 526 True 601.000000 601 87.109000 2381 2923 1 chr2D.!!$R3 542
16 TraesCS3A01G127200 chr7D 6716802 6717334 532 False 606.000000 606 87.067000 2375 2923 1 chr7D.!!$F1 548
17 TraesCS3A01G127200 chr4D 179847339 179847918 579 True 523.000000 523 82.990000 6237 6816 1 chr4D.!!$R1 579
18 TraesCS3A01G127200 chr7A 23182879 23183543 664 False 484.000000 484 80.918000 4 661 1 chr7A.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.036105 TGAGACAAGGCGATGCACAT 60.036 50.000 0.00 0.00 0.00 3.21 F
422 455 1.069204 CATGTACTGATCCAGGTCGGG 59.931 57.143 0.00 0.00 35.51 5.14 F
955 1010 1.435408 GAGCTCTGCCAAAGATCCGC 61.435 60.000 6.43 0.00 33.29 5.54 F
2170 2232 1.535028 TGTGGCAAGTTGCGATAGTTG 59.465 47.619 21.11 0.00 46.21 3.16 F
3071 3153 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85 F
3138 3220 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 F
3151 3233 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00 F
3152 3234 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66 F
3159 3241 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61 F
3160 3242 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61 F
3161 3243 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35 F
3162 3244 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58 F
3265 3347 2.742348 TCCGAGAGCAATGGGTACTTA 58.258 47.619 0.00 0.00 0.00 2.24 F
4152 4423 3.477899 AAGATTTGCGAGCTAAGTTGC 57.522 42.857 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1911 1.063183 AGCCTCTCAGCCTTCACTTT 58.937 50.000 0.00 0.00 0.00 2.66 R
1852 1912 1.944177 TAGCCTCTCAGCCTTCACTT 58.056 50.000 0.00 0.00 0.00 3.16 R
2444 2514 2.696506 ACATCATGTGTCAGCTGTCAG 58.303 47.619 14.12 3.30 35.77 3.51 R
3108 3190 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 R
4830 5103 1.413445 CTCAATCTCTGGAGCTCTGGG 59.587 57.143 14.64 7.24 0.00 4.45 R
5138 5413 0.460459 GCTTAGCCCTCGTCAAGACC 60.460 60.000 0.00 0.00 0.00 3.85 R
5232 5507 4.158394 TCAAGGACTGAAAATGGCTATTGC 59.842 41.667 0.00 0.00 38.76 3.56 R
5237 5512 5.184892 AGTATCAAGGACTGAAAATGGCT 57.815 39.130 0.00 0.00 37.67 4.75 R
5588 5864 6.018589 TGAACTTGACACAACAAACATCAA 57.981 33.333 0.00 0.00 0.00 2.57 R
5645 6794 6.806249 GTCAATTTCAAACGCAATCTGGATTA 59.194 34.615 0.00 0.00 0.00 1.75 R
5699 6848 6.037062 AGCTTACAAAATTTGAACTTTGGCAC 59.963 34.615 13.19 0.00 36.94 5.01 R
5876 7025 4.734398 CCAAAAAGGTAGGCATGCATAA 57.266 40.909 21.36 0.21 0.00 1.90 R
6033 7182 6.653020 TCCATAGTGTCAAGTAATTGCAGAT 58.347 36.000 0.00 0.00 0.00 2.90 R
6916 8066 3.181487 CCTTCCTCCAAAAATGCCATACG 60.181 47.826 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.036105 TGAGACAAGGCGATGCACAT 60.036 50.000 0.00 0.00 0.00 3.21
36 37 1.938577 CACATGAAGAGGAAGCGATGG 59.061 52.381 0.00 0.00 0.00 3.51
91 95 4.802051 TCCCCAGCGCTTGCATCC 62.802 66.667 7.50 0.00 42.66 3.51
93 97 2.831742 CCCAGCGCTTGCATCCAT 60.832 61.111 7.50 0.00 42.66 3.41
121 125 2.356313 CTCGACGTGCTGCCAAGT 60.356 61.111 0.00 0.00 36.36 3.16
124 128 2.280797 GACGTGCTGCCAAGTCCA 60.281 61.111 0.00 0.00 42.34 4.02
127 131 2.591715 GTGCTGCCAAGTCCACGT 60.592 61.111 0.00 0.00 0.00 4.49
159 163 2.178580 CTCTTGTCCTGCTTCCTCTCT 58.821 52.381 0.00 0.00 0.00 3.10
160 164 1.898472 TCTTGTCCTGCTTCCTCTCTG 59.102 52.381 0.00 0.00 0.00 3.35
219 223 1.444383 GTCAGCGTGCTCATCGACA 60.444 57.895 5.48 0.00 0.00 4.35
244 248 2.501316 TCACAGGTGTCATCCCATACTG 59.499 50.000 0.00 0.00 0.00 2.74
264 269 6.431198 ACTGAAACAACAACGAACAACTAT 57.569 33.333 0.00 0.00 0.00 2.12
422 455 1.069204 CATGTACTGATCCAGGTCGGG 59.931 57.143 0.00 0.00 35.51 5.14
456 489 3.059044 CGTTCCGTTCGACTAGAAACATG 59.941 47.826 0.00 0.00 41.10 3.21
471 504 2.859165 ACATGTTGATCGAACCAGGT 57.141 45.000 0.00 0.00 33.07 4.00
516 549 5.124936 GGCAGAACCGTCCTAAAAATTATGT 59.875 40.000 0.00 0.00 0.00 2.29
518 551 7.184779 GCAGAACCGTCCTAAAAATTATGTAC 58.815 38.462 0.00 0.00 0.00 2.90
520 553 9.590451 CAGAACCGTCCTAAAAATTATGTACTA 57.410 33.333 0.00 0.00 0.00 1.82
522 555 9.369904 GAACCGTCCTAAAAATTATGTACTACA 57.630 33.333 0.00 0.00 0.00 2.74
524 557 8.534496 ACCGTCCTAAAAATTATGTACTACAGT 58.466 33.333 0.00 0.00 0.00 3.55
661 706 6.990798 TGTGTCATTTTATCAATTTGCTCCA 58.009 32.000 0.00 0.00 0.00 3.86
662 707 7.613585 TGTGTCATTTTATCAATTTGCTCCAT 58.386 30.769 0.00 0.00 0.00 3.41
663 708 7.546316 TGTGTCATTTTATCAATTTGCTCCATG 59.454 33.333 0.00 0.00 0.00 3.66
664 709 6.535865 TGTCATTTTATCAATTTGCTCCATGC 59.464 34.615 0.00 0.00 43.25 4.06
665 710 6.759827 GTCATTTTATCAATTTGCTCCATGCT 59.240 34.615 0.00 0.00 43.37 3.79
741 787 2.805353 CGCGACAGGAGACGTTGG 60.805 66.667 0.00 0.00 35.39 3.77
955 1010 1.435408 GAGCTCTGCCAAAGATCCGC 61.435 60.000 6.43 0.00 33.29 5.54
1718 1776 3.496131 CGTTGCGGCGCTGGTTAT 61.496 61.111 33.26 0.00 0.00 1.89
1851 1911 4.309933 CGATAGCAATGCCATGAGAGTTA 58.690 43.478 0.00 0.00 0.00 2.24
1852 1912 4.751600 CGATAGCAATGCCATGAGAGTTAA 59.248 41.667 0.00 0.00 0.00 2.01
1992 2054 4.337274 CCTGAGCATAAATCATGTTGCTGA 59.663 41.667 12.16 5.81 44.98 4.26
2086 2148 7.064253 GTCGTAAGCAAGATGGTAAACTGTATT 59.936 37.037 0.00 0.00 37.18 1.89
2170 2232 1.535028 TGTGGCAAGTTGCGATAGTTG 59.465 47.619 21.11 0.00 46.21 3.16
2322 2388 6.448006 ACTCACTCCGTATCACAATATAAGC 58.552 40.000 0.00 0.00 0.00 3.09
2477 2548 6.714356 TGACACATGATGTTTCATAACCTCAA 59.286 34.615 10.13 0.00 43.56 3.02
2741 2815 9.994432 CAGTTTCAATTCATTTGACCTATAGAC 57.006 33.333 0.00 0.00 43.99 2.59
2973 3055 4.608948 CAGAAGTTACTGGTCCAGTCTT 57.391 45.455 28.07 23.75 41.21 3.01
2974 3056 5.723672 CAGAAGTTACTGGTCCAGTCTTA 57.276 43.478 28.07 12.06 41.21 2.10
2975 3057 6.287589 CAGAAGTTACTGGTCCAGTCTTAT 57.712 41.667 28.07 19.08 41.21 1.73
2976 3058 6.102663 CAGAAGTTACTGGTCCAGTCTTATG 58.897 44.000 28.07 25.10 41.21 1.90
2977 3059 4.473477 AGTTACTGGTCCAGTCTTATGC 57.527 45.455 28.07 12.31 41.21 3.14
2978 3060 3.197983 AGTTACTGGTCCAGTCTTATGCC 59.802 47.826 28.07 9.10 41.21 4.40
2979 3061 1.656587 ACTGGTCCAGTCTTATGCCA 58.343 50.000 19.42 0.00 41.21 4.92
2980 3062 2.200081 ACTGGTCCAGTCTTATGCCAT 58.800 47.619 19.42 0.00 41.21 4.40
2981 3063 2.578021 ACTGGTCCAGTCTTATGCCATT 59.422 45.455 19.42 0.00 41.21 3.16
2982 3064 3.209410 CTGGTCCAGTCTTATGCCATTC 58.791 50.000 11.09 0.00 0.00 2.67
2983 3065 2.846206 TGGTCCAGTCTTATGCCATTCT 59.154 45.455 0.00 0.00 0.00 2.40
2984 3066 3.209410 GGTCCAGTCTTATGCCATTCTG 58.791 50.000 0.00 0.00 0.00 3.02
2985 3067 3.370953 GGTCCAGTCTTATGCCATTCTGT 60.371 47.826 0.00 0.00 0.00 3.41
2986 3068 4.141711 GGTCCAGTCTTATGCCATTCTGTA 60.142 45.833 0.00 0.00 0.00 2.74
2987 3069 5.428253 GTCCAGTCTTATGCCATTCTGTAA 58.572 41.667 0.00 0.00 0.00 2.41
2988 3070 5.880332 GTCCAGTCTTATGCCATTCTGTAAA 59.120 40.000 0.00 0.00 0.00 2.01
2989 3071 6.374333 GTCCAGTCTTATGCCATTCTGTAAAA 59.626 38.462 0.00 0.00 0.00 1.52
2990 3072 6.945435 TCCAGTCTTATGCCATTCTGTAAAAA 59.055 34.615 0.00 0.00 0.00 1.94
2991 3073 7.121168 TCCAGTCTTATGCCATTCTGTAAAAAG 59.879 37.037 0.00 0.00 0.00 2.27
2992 3074 7.253422 CAGTCTTATGCCATTCTGTAAAAAGG 58.747 38.462 0.00 0.00 0.00 3.11
2993 3075 6.378280 AGTCTTATGCCATTCTGTAAAAAGGG 59.622 38.462 0.00 0.00 0.00 3.95
2997 3079 3.236632 CCATTCTGTAAAAAGGGCAGC 57.763 47.619 0.00 0.00 0.00 5.25
2998 3080 2.094026 CCATTCTGTAAAAAGGGCAGCC 60.094 50.000 1.26 1.26 0.00 4.85
2999 3081 1.627864 TTCTGTAAAAAGGGCAGCCC 58.372 50.000 24.90 24.90 45.90 5.19
3010 3092 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3011 3093 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3012 3094 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3013 3095 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3014 3096 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3015 3097 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3016 3098 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3017 3099 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3018 3100 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3020 3102 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3021 3103 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3022 3104 1.450312 GCATGTAGCTCCCGCTTGT 60.450 57.895 0.00 0.00 46.47 3.16
3023 3105 1.709147 GCATGTAGCTCCCGCTTGTG 61.709 60.000 0.00 0.00 46.47 3.33
3024 3106 1.450312 ATGTAGCTCCCGCTTGTGC 60.450 57.895 0.00 0.00 46.47 4.57
3025 3107 2.047274 GTAGCTCCCGCTTGTGCA 60.047 61.111 0.00 0.00 46.47 4.57
3026 3108 2.103042 GTAGCTCCCGCTTGTGCAG 61.103 63.158 0.00 0.00 46.47 4.41
3027 3109 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
3029 3111 4.335647 CTCCCGCTTGTGCAGGGT 62.336 66.667 7.78 0.00 46.04 4.34
3030 3112 4.329545 TCCCGCTTGTGCAGGGTC 62.330 66.667 7.78 0.00 46.04 4.46
3031 3113 4.335647 CCCGCTTGTGCAGGGTCT 62.336 66.667 0.00 0.00 43.24 3.85
3032 3114 3.052082 CCGCTTGTGCAGGGTCTG 61.052 66.667 0.00 0.00 39.64 3.51
3033 3115 3.052082 CGCTTGTGCAGGGTCTGG 61.052 66.667 0.00 0.00 39.64 3.86
3034 3116 2.674380 GCTTGTGCAGGGTCTGGG 60.674 66.667 0.00 0.00 39.41 4.45
3035 3117 2.034687 CTTGTGCAGGGTCTGGGG 59.965 66.667 0.00 0.00 31.21 4.96
3036 3118 2.449518 TTGTGCAGGGTCTGGGGA 60.450 61.111 0.00 0.00 31.21 4.81
3037 3119 2.067932 CTTGTGCAGGGTCTGGGGAA 62.068 60.000 0.00 0.00 31.21 3.97
3038 3120 2.067932 TTGTGCAGGGTCTGGGGAAG 62.068 60.000 0.00 0.00 31.21 3.46
3039 3121 2.935481 TGCAGGGTCTGGGGAAGG 60.935 66.667 0.00 0.00 31.21 3.46
3040 3122 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3041 3123 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3042 3124 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3043 3125 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3044 3126 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3045 3127 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3046 3128 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3047 3129 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3048 3130 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3049 3131 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3050 3132 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3051 3133 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3052 3134 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3053 3135 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3054 3136 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3055 3137 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3056 3138 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3066 3148 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3067 3149 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3068 3150 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3069 3151 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3070 3152 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3071 3153 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3072 3154 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3073 3155 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3074 3156 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3075 3157 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3076 3158 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3077 3159 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3078 3160 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3079 3161 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3080 3162 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3081 3163 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3082 3164 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3083 3165 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3084 3166 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3085 3167 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3086 3168 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3087 3169 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3088 3170 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
3089 3171 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
3090 3172 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
3091 3173 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
3092 3174 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
3102 3184 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
3103 3185 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
3104 3186 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
3105 3187 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
3106 3188 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
3107 3189 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
3108 3190 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
3109 3191 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3110 3192 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3111 3193 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3112 3194 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3113 3195 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3114 3196 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3115 3197 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3116 3198 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3117 3199 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3118 3200 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3119 3201 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3120 3202 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3121 3203 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3122 3204 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3123 3205 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3124 3206 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3125 3207 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3126 3208 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3137 3219 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3138 3220 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3139 3221 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3140 3222 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3141 3223 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3142 3224 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3143 3225 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3144 3226 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3145 3227 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3146 3228 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3147 3229 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3148 3230 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3149 3231 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3150 3232 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3151 3233 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3152 3234 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3156 3238 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3157 3239 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3158 3240 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3159 3241 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3160 3242 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3161 3243 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3162 3244 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3163 3245 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3265 3347 2.742348 TCCGAGAGCAATGGGTACTTA 58.258 47.619 0.00 0.00 0.00 2.24
3737 3819 7.339212 AGTGCTTTTTATGCCTAATGTACATGA 59.661 33.333 9.63 0.00 0.00 3.07
3747 3829 8.791327 TGCCTAATGTACATGATATTACCATG 57.209 34.615 9.63 0.00 45.03 3.66
3946 4217 4.789012 ACAGTGTTAGAATTTGCATGGG 57.211 40.909 0.00 0.00 0.00 4.00
4152 4423 3.477899 AAGATTTGCGAGCTAAGTTGC 57.522 42.857 0.00 0.00 0.00 4.17
4205 4476 5.845985 ACAATGCGGATATTATTGACTCG 57.154 39.130 0.00 0.00 36.09 4.18
4379 4651 4.795268 TGACGTCTACATTGAGTTCACTC 58.205 43.478 17.92 0.00 43.15 3.51
4725 4998 4.810191 ACAGATTGAACCACCTAGAGAC 57.190 45.455 0.00 0.00 0.00 3.36
4830 5103 4.618489 CGTTTGGCAGAAGAAATTGATGAC 59.382 41.667 0.00 0.00 0.00 3.06
5138 5413 5.657474 TGTCGTTATTGTAGGCTAAGGAAG 58.343 41.667 0.00 0.00 0.00 3.46
5354 5629 9.860650 AAATCTGGTATATGCAGTGGTTATTAA 57.139 29.630 0.00 0.00 0.00 1.40
5588 5864 9.892130 ACCGATTCTTCTTATAGACATTTTTCT 57.108 29.630 0.00 0.00 0.00 2.52
5665 6814 6.686630 ACATTAATCCAGATTGCGTTTGAAA 58.313 32.000 3.10 0.00 32.50 2.69
5672 6821 4.148696 CCAGATTGCGTTTGAAATTGACAC 59.851 41.667 0.00 0.00 0.00 3.67
5673 6822 4.977963 CAGATTGCGTTTGAAATTGACACT 59.022 37.500 0.00 0.00 0.00 3.55
6033 7182 8.437575 GTTCCTTCAAATATTATACTCCCTCCA 58.562 37.037 0.00 0.00 0.00 3.86
6036 7185 8.830741 CCTTCAAATATTATACTCCCTCCATCT 58.169 37.037 0.00 0.00 0.00 2.90
6108 7257 3.366476 CCGTTTGGGCGTCAAATAATTCA 60.366 43.478 8.76 0.00 45.79 2.57
6113 7262 3.279434 GGGCGTCAAATAATTCAGGACT 58.721 45.455 0.00 0.00 0.00 3.85
6817 7967 6.314896 GTCAGTTCCAGAATAAAGAGGATGTG 59.685 42.308 0.00 0.00 0.00 3.21
6916 8066 3.406764 ACAGATTGTTTCTCAGACCTGC 58.593 45.455 0.00 0.00 29.93 4.85
7017 8167 1.550130 TTGTTAGCCTGGGAGGGTCG 61.550 60.000 0.00 0.00 43.92 4.79
7244 8394 2.779471 CGTTTTAGTGTGTTTGTTCGCC 59.221 45.455 0.00 0.00 0.00 5.54
7258 8408 1.197721 GTTCGCCCATTTCACTCTGTG 59.802 52.381 0.00 0.00 34.45 3.66
7329 8483 8.108364 ACGAAGGGAGTAGTATATGTTATAGCT 58.892 37.037 0.00 0.00 0.00 3.32
7330 8484 8.399425 CGAAGGGAGTAGTATATGTTATAGCTG 58.601 40.741 0.00 0.00 0.00 4.24
7373 8536 1.401905 GGCTTTATTTGCTGGTCCTCG 59.598 52.381 0.00 0.00 0.00 4.63
7410 8575 2.374839 TGGATTCATGTGTTCCTGGTCA 59.625 45.455 10.99 0.00 0.00 4.02
7481 8652 4.275508 CATGGGGATGGCTCGGGG 62.276 72.222 0.00 0.00 0.00 5.73
7510 8681 6.409704 TGACTGAATTTAGAATCTGGGTCAG 58.590 40.000 3.94 11.13 37.77 3.51
7542 8718 2.035832 CCGTTGAATGGAAAAGCAACCT 59.964 45.455 0.00 0.00 37.83 3.50
7543 8719 3.052036 CGTTGAATGGAAAAGCAACCTG 58.948 45.455 0.00 0.00 37.83 4.00
7544 8720 3.243367 CGTTGAATGGAAAAGCAACCTGA 60.243 43.478 0.00 0.00 37.83 3.86
7545 8721 4.051237 GTTGAATGGAAAAGCAACCTGAC 58.949 43.478 0.00 0.00 35.74 3.51
7546 8722 3.295093 TGAATGGAAAAGCAACCTGACA 58.705 40.909 0.00 0.00 0.00 3.58
7547 8723 3.896888 TGAATGGAAAAGCAACCTGACAT 59.103 39.130 0.00 0.00 0.00 3.06
7548 8724 5.076182 TGAATGGAAAAGCAACCTGACATA 58.924 37.500 0.00 0.00 0.00 2.29
7549 8725 5.538053 TGAATGGAAAAGCAACCTGACATAA 59.462 36.000 0.00 0.00 0.00 1.90
7559 8735 6.578023 AGCAACCTGACATAACTTCTATCTC 58.422 40.000 0.00 0.00 0.00 2.75
7560 8736 5.755861 GCAACCTGACATAACTTCTATCTCC 59.244 44.000 0.00 0.00 0.00 3.71
7561 8737 5.776173 ACCTGACATAACTTCTATCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
7635 8811 4.778143 GCCGGCCGAATCACCTGT 62.778 66.667 30.73 0.00 0.00 4.00
7639 8815 0.527817 CGGCCGAATCACCTGTCTAC 60.528 60.000 24.07 0.00 0.00 2.59
7649 8825 3.760035 CTGTCTACGCCGCCCACT 61.760 66.667 0.00 0.00 0.00 4.00
7650 8826 3.989698 CTGTCTACGCCGCCCACTG 62.990 68.421 0.00 0.00 0.00 3.66
7664 8840 2.281070 ACTGCTGGTGGTGCTTCG 60.281 61.111 0.00 0.00 0.00 3.79
7675 8851 1.598130 GTGCTTCGGTGACAGCCTT 60.598 57.895 0.00 0.00 0.00 4.35
7681 8857 2.113986 GGTGACAGCCTTGCCACT 59.886 61.111 0.00 0.00 37.76 4.00
7689 8865 4.785453 CCTTGCCACTCCGCCCTC 62.785 72.222 0.00 0.00 0.00 4.30
7697 8873 2.770048 CTCCGCCCTCCCCTCAAT 60.770 66.667 0.00 0.00 0.00 2.57
7698 8874 2.768344 TCCGCCCTCCCCTCAATC 60.768 66.667 0.00 0.00 0.00 2.67
7699 8875 3.089874 CCGCCCTCCCCTCAATCA 61.090 66.667 0.00 0.00 0.00 2.57
7701 8877 1.533711 CGCCCTCCCCTCAATCATT 59.466 57.895 0.00 0.00 0.00 2.57
7709 8885 1.205417 CCCCTCAATCATTGTGTTGCC 59.795 52.381 0.00 0.00 0.00 4.52
7712 8888 1.200716 CTCAATCATTGTGTTGCCGCT 59.799 47.619 0.00 0.00 0.00 5.52
7716 8892 3.683937 ATTGTGTTGCCGCTGCCC 61.684 61.111 0.00 0.00 36.33 5.36
7732 8908 0.765510 GCCCCGGTCATCCTTCTAAT 59.234 55.000 0.00 0.00 0.00 1.73
7733 8909 1.270893 GCCCCGGTCATCCTTCTAATC 60.271 57.143 0.00 0.00 0.00 1.75
7734 8910 1.348036 CCCCGGTCATCCTTCTAATCC 59.652 57.143 0.00 0.00 0.00 3.01
7738 8914 1.270893 GGTCATCCTTCTAATCCCGGC 60.271 57.143 0.00 0.00 0.00 6.13
7744 8920 1.276421 CCTTCTAATCCCGGCGATGAT 59.724 52.381 9.30 7.32 0.00 2.45
7746 8922 0.526211 TCTAATCCCGGCGATGATCG 59.474 55.000 9.30 11.02 43.89 3.69
7747 8923 0.458543 CTAATCCCGGCGATGATCGG 60.459 60.000 17.27 0.00 45.29 4.18
7757 8933 2.737252 GGCGATGATCGGTTTCTTATCC 59.263 50.000 17.27 1.83 40.84 2.59
7763 8939 3.196039 TGATCGGTTTCTTATCCGGTGAA 59.804 43.478 0.00 0.00 45.79 3.18
7776 8952 4.065110 GTGAACCTGCACACCTCC 57.935 61.111 0.00 0.00 38.63 4.30
7782 8969 3.721706 CTGCACACCTCCCTCCCC 61.722 72.222 0.00 0.00 0.00 4.81
7810 8997 3.458487 ACCCACACCCCAAGATAGATAAC 59.542 47.826 0.00 0.00 0.00 1.89
7812 8999 3.386726 CCACACCCCAAGATAGATAACGA 59.613 47.826 0.00 0.00 0.00 3.85
7835 9022 1.895798 TCGCCTGCCATCCTAAGATAG 59.104 52.381 0.00 0.00 0.00 2.08
7837 9024 2.499289 CGCCTGCCATCCTAAGATAGAT 59.501 50.000 0.00 0.00 0.00 1.98
7846 9033 4.054359 TCCTAAGATAGATCCAGAGGGC 57.946 50.000 0.00 0.00 0.00 5.19
7848 9035 4.108778 TCCTAAGATAGATCCAGAGGGCTT 59.891 45.833 0.00 0.00 0.00 4.35
7849 9036 4.466015 CCTAAGATAGATCCAGAGGGCTTC 59.534 50.000 0.00 0.00 0.00 3.86
7850 9037 3.921287 AGATAGATCCAGAGGGCTTCT 57.079 47.619 0.00 0.00 36.25 2.85
7851 9038 4.212070 AGATAGATCCAGAGGGCTTCTT 57.788 45.455 0.00 0.00 32.41 2.52
7852 9039 4.159557 AGATAGATCCAGAGGGCTTCTTC 58.840 47.826 0.00 0.00 32.41 2.87
7853 9040 1.118838 AGATCCAGAGGGCTTCTTCG 58.881 55.000 0.00 0.00 32.41 3.79
7854 9041 0.105778 GATCCAGAGGGCTTCTTCGG 59.894 60.000 0.00 0.00 32.41 4.30
7855 9042 1.977293 ATCCAGAGGGCTTCTTCGGC 61.977 60.000 0.00 0.00 32.41 5.54
7856 9043 2.664081 CCAGAGGGCTTCTTCGGCT 61.664 63.158 0.00 0.00 32.41 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.671472 TGTGCATCGCCTTGTCTCAG 60.671 55.000 0.00 0.00 0.00 3.35
1 2 0.036105 ATGTGCATCGCCTTGTCTCA 60.036 50.000 0.00 0.00 0.00 3.27
2 3 0.376152 CATGTGCATCGCCTTGTCTC 59.624 55.000 0.00 0.00 0.00 3.36
20 21 1.221840 GCCCATCGCTTCCTCTTCA 59.778 57.895 0.00 0.00 0.00 3.02
88 92 3.668447 GTCGAGGAATATGCACATGGAT 58.332 45.455 0.00 0.00 0.00 3.41
91 95 2.219445 CACGTCGAGGAATATGCACATG 59.781 50.000 12.85 0.00 0.00 3.21
92 96 2.473816 CACGTCGAGGAATATGCACAT 58.526 47.619 12.85 0.00 0.00 3.21
93 97 1.921243 CACGTCGAGGAATATGCACA 58.079 50.000 12.85 0.00 0.00 4.57
105 109 2.355837 GACTTGGCAGCACGTCGA 60.356 61.111 0.00 0.00 0.00 4.20
159 163 2.940890 GAAATGGATCCTCGCGGGCA 62.941 60.000 14.23 0.00 34.39 5.36
160 164 2.203209 AAATGGATCCTCGCGGGC 60.203 61.111 14.23 0.00 34.39 6.13
205 209 0.093705 GAGTTTGTCGATGAGCACGC 59.906 55.000 0.00 0.00 0.00 5.34
219 223 1.774254 TGGGATGACACCTGTGAGTTT 59.226 47.619 3.94 0.00 0.00 2.66
244 248 6.790825 GCTCTATAGTTGTTCGTTGTTGTTTC 59.209 38.462 0.00 0.00 0.00 2.78
341 374 5.559417 GCAAACAAGAGCATTTGTCAATTGG 60.559 40.000 5.42 0.00 40.24 3.16
447 480 4.935205 CCTGGTTCGATCAACATGTTTCTA 59.065 41.667 8.77 0.00 36.61 2.10
456 489 1.997606 CCGTTACCTGGTTCGATCAAC 59.002 52.381 20.08 10.61 0.00 3.18
471 504 0.456628 TCGCATCGATTCACCCGTTA 59.543 50.000 0.00 0.00 0.00 3.18
516 549 5.981088 TTTTCACGTATGGGACTGTAGTA 57.019 39.130 0.00 0.00 0.00 1.82
518 551 5.235516 AGTTTTTCACGTATGGGACTGTAG 58.764 41.667 0.00 0.00 0.00 2.74
520 553 4.062991 GAGTTTTTCACGTATGGGACTGT 58.937 43.478 0.00 0.00 0.00 3.55
522 555 4.618920 AGAGTTTTTCACGTATGGGACT 57.381 40.909 0.00 0.00 0.00 3.85
524 557 6.938030 ACAAATAGAGTTTTTCACGTATGGGA 59.062 34.615 0.00 0.00 0.00 4.37
661 706 5.308825 CCATTTTATCTCCGTCCTAAGCAT 58.691 41.667 0.00 0.00 0.00 3.79
662 707 4.444306 CCCATTTTATCTCCGTCCTAAGCA 60.444 45.833 0.00 0.00 0.00 3.91
663 708 4.065789 CCCATTTTATCTCCGTCCTAAGC 58.934 47.826 0.00 0.00 0.00 3.09
664 709 4.642429 CCCCATTTTATCTCCGTCCTAAG 58.358 47.826 0.00 0.00 0.00 2.18
665 710 3.181448 GCCCCATTTTATCTCCGTCCTAA 60.181 47.826 0.00 0.00 0.00 2.69
729 774 1.221840 CCCCATCCAACGTCTCCTG 59.778 63.158 0.00 0.00 0.00 3.86
741 787 2.244651 CGTTCGATTCGCCCCCATC 61.245 63.158 0.00 0.00 0.00 3.51
1604 1659 3.087370 TCAGCAGCAGGAAGTAGAGTA 57.913 47.619 0.00 0.00 0.00 2.59
1605 1660 1.930251 TCAGCAGCAGGAAGTAGAGT 58.070 50.000 0.00 0.00 0.00 3.24
1718 1776 2.685017 AGAGCCAGATGGTGCCGA 60.685 61.111 0.00 0.00 37.57 5.54
1851 1911 1.063183 AGCCTCTCAGCCTTCACTTT 58.937 50.000 0.00 0.00 0.00 2.66
1852 1912 1.944177 TAGCCTCTCAGCCTTCACTT 58.056 50.000 0.00 0.00 0.00 3.16
2054 2116 3.190874 CCATCTTGCTTACGACCTCTTC 58.809 50.000 0.00 0.00 0.00 2.87
2086 2148 5.132502 CCATATTAGGTGGTTCTGCATTGA 58.867 41.667 0.00 0.00 31.96 2.57
2170 2232 7.926018 AGTTGGATCTTACACAATTTTGGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
2444 2514 2.696506 ACATCATGTGTCAGCTGTCAG 58.303 47.619 14.12 3.30 35.77 3.51
2477 2548 3.860681 CCCACAGCTGGCAAAACT 58.139 55.556 19.93 0.00 36.00 2.66
2692 2766 8.584157 ACTGAAAATATAAGTGATGCACCAAAA 58.416 29.630 0.00 0.00 34.49 2.44
2741 2815 9.467258 CAATTCCATACATTTAGCATAAACCAG 57.533 33.333 0.00 0.00 0.00 4.00
2973 3055 4.348486 TGCCCTTTTTACAGAATGGCATA 58.652 39.130 0.00 0.00 43.62 3.14
2974 3056 3.172339 TGCCCTTTTTACAGAATGGCAT 58.828 40.909 0.00 0.00 43.62 4.40
2975 3057 2.562298 CTGCCCTTTTTACAGAATGGCA 59.438 45.455 0.00 0.00 43.62 4.92
2976 3058 2.675032 GCTGCCCTTTTTACAGAATGGC 60.675 50.000 0.00 0.00 43.62 4.40
2977 3059 2.094026 GGCTGCCCTTTTTACAGAATGG 60.094 50.000 7.66 0.00 43.62 3.16
2978 3060 2.094026 GGGCTGCCCTTTTTACAGAATG 60.094 50.000 30.42 0.00 41.34 2.67
2979 3061 2.179427 GGGCTGCCCTTTTTACAGAAT 58.821 47.619 30.42 0.00 41.34 2.40
2980 3062 1.627864 GGGCTGCCCTTTTTACAGAA 58.372 50.000 30.42 0.00 41.34 3.02
2981 3063 0.251608 GGGGCTGCCCTTTTTACAGA 60.252 55.000 34.99 0.00 44.66 3.41
2982 3064 0.541764 TGGGGCTGCCCTTTTTACAG 60.542 55.000 34.99 0.00 44.66 2.74
2983 3065 0.541764 CTGGGGCTGCCCTTTTTACA 60.542 55.000 34.99 22.29 44.66 2.41
2984 3066 0.541998 ACTGGGGCTGCCCTTTTTAC 60.542 55.000 34.99 18.91 44.66 2.01
2985 3067 0.541764 CACTGGGGCTGCCCTTTTTA 60.542 55.000 34.99 16.27 44.66 1.52
2986 3068 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
2987 3069 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
2992 3074 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2993 3075 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2994 3076 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2995 3077 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2996 3078 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2997 3079 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2998 3080 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2999 3081 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3000 3082 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3015 3097 3.052082 CAGACCCTGCACAAGCGG 61.052 66.667 0.00 0.00 46.23 5.52
3016 3098 3.052082 CCAGACCCTGCACAAGCG 61.052 66.667 0.00 0.00 46.23 4.68
3017 3099 2.674380 CCCAGACCCTGCACAAGC 60.674 66.667 0.00 0.00 42.57 4.01
3018 3100 2.034687 CCCCAGACCCTGCACAAG 59.965 66.667 0.00 0.00 0.00 3.16
3019 3101 2.067932 CTTCCCCAGACCCTGCACAA 62.068 60.000 0.00 0.00 0.00 3.33
3020 3102 2.449518 TTCCCCAGACCCTGCACA 60.450 61.111 0.00 0.00 0.00 4.57
3021 3103 2.352805 CTTCCCCAGACCCTGCAC 59.647 66.667 0.00 0.00 0.00 4.57
3022 3104 2.935481 CCTTCCCCAGACCCTGCA 60.935 66.667 0.00 0.00 0.00 4.41
3023 3105 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3024 3106 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3025 3107 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3026 3108 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3027 3109 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3028 3110 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3029 3111 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3030 3112 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3031 3113 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3032 3114 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3033 3115 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3034 3116 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3035 3117 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3036 3118 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3037 3119 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3038 3120 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3039 3121 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3040 3122 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3045 3127 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3046 3128 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3047 3129 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3048 3130 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3049 3131 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3050 3132 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3051 3133 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3052 3134 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3053 3135 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3054 3136 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3055 3137 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3056 3138 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3057 3139 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3058 3140 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3059 3141 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3060 3142 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3061 3143 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3062 3144 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3063 3145 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3064 3146 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3065 3147 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3066 3148 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3067 3149 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
3068 3150 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
3069 3151 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
3070 3152 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
3071 3153 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
3072 3154 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
3073 3155 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
3074 3156 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
3075 3157 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
3076 3158 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
3077 3159 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
3078 3160 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
3079 3161 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
3080 3162 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
3081 3163 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
3082 3164 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
3083 3165 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
3084 3166 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
3085 3167 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
3096 3178 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3097 3179 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3098 3180 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3099 3181 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3100 3182 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3101 3183 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3102 3184 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3103 3185 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3104 3186 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3105 3187 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3106 3188 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3107 3189 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3108 3190 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3109 3191 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3110 3192 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3120 3202 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3121 3203 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3122 3204 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3123 3205 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3124 3206 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3125 3207 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3126 3208 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3127 3209 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3128 3210 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3129 3211 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3130 3212 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3131 3213 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3132 3214 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3133 3215 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3134 3216 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3139 3221 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3140 3222 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3141 3223 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3142 3224 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3143 3225 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3144 3226 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3145 3227 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3153 3235 3.689002 GAGAAGGGGAGCCTTGGCG 62.689 68.421 5.95 0.00 0.00 5.69
3154 3236 1.857638 AAGAGAAGGGGAGCCTTGGC 61.858 60.000 2.97 2.97 0.00 4.52
3155 3237 1.584724 TAAGAGAAGGGGAGCCTTGG 58.415 55.000 0.00 0.00 0.00 3.61
3156 3238 2.747799 GCATAAGAGAAGGGGAGCCTTG 60.748 54.545 0.00 0.00 0.00 3.61
3157 3239 1.492599 GCATAAGAGAAGGGGAGCCTT 59.507 52.381 0.00 0.00 0.00 4.35
3158 3240 1.135960 GCATAAGAGAAGGGGAGCCT 58.864 55.000 0.00 0.00 0.00 4.58
3159 3241 0.109532 GGCATAAGAGAAGGGGAGCC 59.890 60.000 0.00 0.00 0.00 4.70
3160 3242 0.839946 TGGCATAAGAGAAGGGGAGC 59.160 55.000 0.00 0.00 0.00 4.70
3161 3243 3.393941 AGAATGGCATAAGAGAAGGGGAG 59.606 47.826 0.00 0.00 0.00 4.30
3162 3244 3.137176 CAGAATGGCATAAGAGAAGGGGA 59.863 47.826 0.00 0.00 0.00 4.81
3163 3245 3.117738 ACAGAATGGCATAAGAGAAGGGG 60.118 47.826 0.00 0.00 43.62 4.79
3164 3246 3.881688 CACAGAATGGCATAAGAGAAGGG 59.118 47.826 0.00 0.00 43.62 3.95
3165 3247 4.334759 CACACAGAATGGCATAAGAGAAGG 59.665 45.833 0.00 0.00 43.62 3.46
3166 3248 5.181009 TCACACAGAATGGCATAAGAGAAG 58.819 41.667 0.00 0.00 43.62 2.85
3167 3249 5.164620 TCACACAGAATGGCATAAGAGAA 57.835 39.130 0.00 0.00 43.62 2.87
3168 3250 4.824479 TCACACAGAATGGCATAAGAGA 57.176 40.909 0.00 0.00 43.62 3.10
3169 3251 4.275196 CCATCACACAGAATGGCATAAGAG 59.725 45.833 0.00 0.00 43.62 2.85
3170 3252 4.201657 CCATCACACAGAATGGCATAAGA 58.798 43.478 0.00 0.00 43.62 2.10
3171 3253 4.563337 CCATCACACAGAATGGCATAAG 57.437 45.455 0.00 0.00 43.62 1.73
3265 3347 2.668212 CCATTGCACCGGACACGT 60.668 61.111 9.46 0.00 38.78 4.49
3747 3829 7.516198 AACACTTGGATTATGCCAATATCTC 57.484 36.000 0.00 0.00 46.19 2.75
4205 4476 9.068008 CAAAAATGCAAATAAGGATTTCAATGC 57.932 29.630 0.00 0.00 38.38 3.56
4265 4536 6.947464 TGGGTTTGTCCAACTAATTTTTCAA 58.053 32.000 0.00 0.00 38.11 2.69
4379 4651 3.863041 GGTAACTACAAAGCCAGAGAGG 58.137 50.000 0.00 0.00 41.84 3.69
4534 4807 4.283978 TCCATGTGCAGTGATTTTTGGAAT 59.716 37.500 0.00 0.00 0.00 3.01
4830 5103 1.413445 CTCAATCTCTGGAGCTCTGGG 59.587 57.143 14.64 7.24 0.00 4.45
5138 5413 0.460459 GCTTAGCCCTCGTCAAGACC 60.460 60.000 0.00 0.00 0.00 3.85
5232 5507 4.158394 TCAAGGACTGAAAATGGCTATTGC 59.842 41.667 0.00 0.00 38.76 3.56
5237 5512 5.184892 AGTATCAAGGACTGAAAATGGCT 57.815 39.130 0.00 0.00 37.67 4.75
5588 5864 6.018589 TGAACTTGACACAACAAACATCAA 57.981 33.333 0.00 0.00 0.00 2.57
5642 6791 7.760131 ATTTCAAACGCAATCTGGATTAATG 57.240 32.000 0.00 0.00 0.00 1.90
5644 6793 7.328249 GTCAATTTCAAACGCAATCTGGATTAA 59.672 33.333 0.00 0.00 0.00 1.40
5645 6794 6.806249 GTCAATTTCAAACGCAATCTGGATTA 59.194 34.615 0.00 0.00 0.00 1.75
5699 6848 6.037062 AGCTTACAAAATTTGAACTTTGGCAC 59.963 34.615 13.19 0.00 36.94 5.01
5876 7025 4.734398 CCAAAAAGGTAGGCATGCATAA 57.266 40.909 21.36 0.21 0.00 1.90
6033 7182 6.653020 TCCATAGTGTCAAGTAATTGCAGAT 58.347 36.000 0.00 0.00 0.00 2.90
6036 7185 7.701539 AAATCCATAGTGTCAAGTAATTGCA 57.298 32.000 0.00 0.00 0.00 4.08
6108 7257 8.422566 GTGCTTTAAATATACTACCTCAGTCCT 58.577 37.037 0.00 0.00 38.80 3.85
6817 7967 3.454371 TGATTAGTAGCTTCCGCTTCC 57.546 47.619 0.00 0.00 46.47 3.46
6916 8066 3.181487 CCTTCCTCCAAAAATGCCATACG 60.181 47.826 0.00 0.00 0.00 3.06
7017 8167 3.451402 ACCTACCCAAAATCTGGTTCC 57.549 47.619 0.00 0.00 44.76 3.62
7032 8182 6.369065 CCAGAACTCTACATGACAAAACCTAC 59.631 42.308 0.00 0.00 0.00 3.18
7040 8190 3.184382 TCCCCAGAACTCTACATGACA 57.816 47.619 0.00 0.00 0.00 3.58
7207 8357 9.525409 ACACTAAAACGTGTCTATATACATTCC 57.475 33.333 0.00 0.00 44.32 3.01
7279 8429 8.830580 CGTTCACAAATATAAGATGTCTTGGAT 58.169 33.333 5.55 0.00 37.40 3.41
7280 8430 8.038351 TCGTTCACAAATATAAGATGTCTTGGA 58.962 33.333 5.55 0.00 37.40 3.53
7285 8435 7.494625 TCCCTTCGTTCACAAATATAAGATGTC 59.505 37.037 0.00 0.00 0.00 3.06
7297 8447 6.379133 ACATATACTACTCCCTTCGTTCACAA 59.621 38.462 0.00 0.00 0.00 3.33
7299 8449 6.388435 ACATATACTACTCCCTTCGTTCAC 57.612 41.667 0.00 0.00 0.00 3.18
7329 8483 1.754803 AGAACCGAGACACAACACTCA 59.245 47.619 0.00 0.00 33.86 3.41
7330 8484 2.510768 AGAACCGAGACACAACACTC 57.489 50.000 0.00 0.00 0.00 3.51
7373 8536 1.169661 TCCAACCGGATGTGTGCAAC 61.170 55.000 9.46 0.00 35.91 4.17
7477 8648 3.694072 TCTAAATTCAGTCAATTGCCCCG 59.306 43.478 0.00 0.00 34.69 5.73
7481 8652 6.976925 CCCAGATTCTAAATTCAGTCAATTGC 59.023 38.462 0.00 0.00 34.69 3.56
7510 8681 0.958822 ATTCAACGGCTGGGAACAAC 59.041 50.000 0.00 0.00 42.06 3.32
7542 8718 6.785337 TTTCCGGAGATAGAAGTTATGTCA 57.215 37.500 3.34 0.00 0.00 3.58
7543 8719 7.434492 TGATTTCCGGAGATAGAAGTTATGTC 58.566 38.462 7.60 0.00 0.00 3.06
7544 8720 7.361457 TGATTTCCGGAGATAGAAGTTATGT 57.639 36.000 7.60 0.00 0.00 2.29
7545 8721 8.715998 CAATGATTTCCGGAGATAGAAGTTATG 58.284 37.037 7.60 0.00 0.00 1.90
7546 8722 8.432805 ACAATGATTTCCGGAGATAGAAGTTAT 58.567 33.333 7.60 0.00 0.00 1.89
7547 8723 7.792032 ACAATGATTTCCGGAGATAGAAGTTA 58.208 34.615 7.60 0.00 0.00 2.24
7548 8724 6.653989 ACAATGATTTCCGGAGATAGAAGTT 58.346 36.000 7.60 0.00 0.00 2.66
7549 8725 6.240549 ACAATGATTTCCGGAGATAGAAGT 57.759 37.500 7.60 2.45 0.00 3.01
7559 8735 3.623060 AGACGATGAACAATGATTTCCGG 59.377 43.478 0.00 0.00 0.00 5.14
7560 8736 4.864916 AGACGATGAACAATGATTTCCG 57.135 40.909 0.00 0.00 0.00 4.30
7561 8737 5.355350 AGGAAGACGATGAACAATGATTTCC 59.645 40.000 0.00 0.00 0.00 3.13
7624 8800 0.866061 CGGCGTAGACAGGTGATTCG 60.866 60.000 0.00 0.00 27.25 3.34
7628 8804 3.755628 GGCGGCGTAGACAGGTGA 61.756 66.667 9.37 0.00 27.25 4.02
7647 8823 2.281070 CGAAGCACCACCAGCAGT 60.281 61.111 0.00 0.00 0.00 4.40
7649 8825 3.872603 ACCGAAGCACCACCAGCA 61.873 61.111 0.00 0.00 0.00 4.41
7650 8826 3.357079 CACCGAAGCACCACCAGC 61.357 66.667 0.00 0.00 0.00 4.85
7651 8827 1.961277 GTCACCGAAGCACCACCAG 60.961 63.158 0.00 0.00 0.00 4.00
7654 8830 2.607892 GCTGTCACCGAAGCACCAC 61.608 63.158 0.00 0.00 39.31 4.16
7658 8834 1.597854 CAAGGCTGTCACCGAAGCA 60.598 57.895 0.00 0.00 41.36 3.91
7662 8838 3.555324 TGGCAAGGCTGTCACCGA 61.555 61.111 0.00 0.00 30.26 4.69
7681 8857 2.768344 GATTGAGGGGAGGGCGGA 60.768 66.667 0.00 0.00 0.00 5.54
7689 8865 1.205417 GGCAACACAATGATTGAGGGG 59.795 52.381 12.80 2.11 0.00 4.79
7695 8871 0.388907 GCAGCGGCAACACAATGATT 60.389 50.000 3.18 0.00 40.72 2.57
7697 8873 2.644418 GCAGCGGCAACACAATGA 59.356 55.556 3.18 0.00 40.72 2.57
7698 8874 2.431260 GGCAGCGGCAACACAATG 60.431 61.111 11.88 0.00 43.71 2.82
7699 8875 3.683937 GGGCAGCGGCAACACAAT 61.684 61.111 11.88 0.00 43.71 2.71
7712 8888 0.619255 TTAGAAGGATGACCGGGGCA 60.619 55.000 4.28 4.28 41.83 5.36
7716 8892 1.000955 CGGGATTAGAAGGATGACCGG 59.999 57.143 0.00 0.00 41.83 5.28
7719 8895 1.605712 CGCCGGGATTAGAAGGATGAC 60.606 57.143 2.18 0.00 0.00 3.06
7720 8896 0.679505 CGCCGGGATTAGAAGGATGA 59.320 55.000 2.18 0.00 0.00 2.92
7726 8902 1.067846 CGATCATCGCCGGGATTAGAA 60.068 52.381 2.18 0.00 31.28 2.10
7746 8922 3.007635 CAGGTTCACCGGATAAGAAACC 58.992 50.000 9.46 11.89 42.08 3.27
7747 8923 2.418976 GCAGGTTCACCGGATAAGAAAC 59.581 50.000 9.46 9.53 42.08 2.78
7763 8939 2.930562 GGAGGGAGGTGTGCAGGT 60.931 66.667 0.00 0.00 0.00 4.00
7788 8975 2.286935 ATCTATCTTGGGGTGTGGGT 57.713 50.000 0.00 0.00 0.00 4.51
7790 8977 3.386726 TCGTTATCTATCTTGGGGTGTGG 59.613 47.826 0.00 0.00 0.00 4.17
7810 8997 4.899239 GGATGGCAGGCGACCTCG 62.899 72.222 0.00 0.00 43.27 4.63
7812 8999 1.689233 TTAGGATGGCAGGCGACCT 60.689 57.895 14.43 14.43 35.11 3.85
7835 9022 0.105778 CCGAAGAAGCCCTCTGGATC 59.894 60.000 0.00 0.00 33.37 3.36
7837 9024 2.660064 GCCGAAGAAGCCCTCTGGA 61.660 63.158 0.00 0.00 33.37 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.