Multiple sequence alignment - TraesCS3A01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G126500 chr3A 100.000 3021 0 0 1 3021 102100698 102097678 0.000000e+00 5579.0
1 TraesCS3A01G126500 chr3A 83.270 2098 303 37 934 3014 175850558 175852624 0.000000e+00 1886.0
2 TraesCS3A01G126500 chr3A 78.689 305 59 6 275 576 175849845 175850146 6.610000e-47 198.0
3 TraesCS3A01G126500 chr2B 88.510 1732 182 16 988 2715 495218064 495219782 0.000000e+00 2080.0
4 TraesCS3A01G126500 chr2B 77.612 134 30 0 281 414 752851771 752851904 6.940000e-12 82.4
5 TraesCS3A01G126500 chr5B 88.155 1756 187 19 988 2740 600365647 600367384 0.000000e+00 2071.0
6 TraesCS3A01G126500 chr5B 90.449 178 17 0 2841 3018 600367441 600367618 5.040000e-58 235.0
7 TraesCS3A01G126500 chr7A 83.986 2042 281 38 989 3014 16984059 16986070 0.000000e+00 1917.0
8 TraesCS3A01G126500 chr7A 77.483 302 64 4 277 576 16983294 16983593 8.610000e-41 178.0
9 TraesCS3A01G126500 chr4A 83.455 2055 294 36 976 3014 70801906 70799882 0.000000e+00 1869.0
10 TraesCS3A01G126500 chr4A 77.961 304 60 7 276 576 70802659 70802360 1.850000e-42 183.0
11 TraesCS3A01G126500 chr6A 93.689 1236 77 1 277 1512 615446656 615445422 0.000000e+00 1849.0
12 TraesCS3A01G126500 chr6A 83.089 1839 255 43 935 2744 135443968 135442157 0.000000e+00 1622.0
13 TraesCS3A01G126500 chr6A 85.955 178 25 0 2841 3018 135442022 135441845 1.110000e-44 191.0
14 TraesCS3A01G126500 chr6A 74.183 306 56 18 276 576 553915007 553915294 4.120000e-19 106.0
15 TraesCS3A01G126500 chr6A 90.000 70 7 0 277 346 571652657 571652726 1.150000e-14 91.6
16 TraesCS3A01G126500 chr1A 82.936 2098 310 38 934 3014 255748102 255746036 0.000000e+00 1847.0
17 TraesCS3A01G126500 chr1A 88.462 78 5 4 500 576 255755495 255755421 1.150000e-14 91.6
18 TraesCS3A01G126500 chr3B 83.551 1836 253 40 934 2744 783208818 783210629 0.000000e+00 1672.0
19 TraesCS3A01G126500 chr3B 88.506 174 20 0 2841 3014 783210763 783210936 8.490000e-51 211.0
20 TraesCS3A01G126500 chr3B 88.166 169 10 4 3 166 130626611 130626448 3.070000e-45 193.0
21 TraesCS3A01G126500 chr3B 88.235 136 6 8 35 166 134238435 134238306 1.450000e-33 154.0
22 TraesCS3A01G126500 chr3B 94.000 50 3 0 228 277 130594994 130594945 3.230000e-10 76.8
23 TraesCS3A01G126500 chr4B 81.128 922 141 27 992 1894 481578039 481577132 0.000000e+00 708.0
24 TraesCS3A01G126500 chr4B 81.579 76 11 3 1965 2039 481577053 481576980 3.250000e-05 60.2
25 TraesCS3A01G126500 chr1B 79.137 139 29 0 276 414 400143640 400143502 2.480000e-16 97.1
26 TraesCS3A01G126500 chrUn 76.812 138 32 0 277 414 41588568 41588431 8.980000e-11 78.7
27 TraesCS3A01G126500 chrUn 76.812 138 32 0 277 414 346207599 346207736 8.980000e-11 78.7
28 TraesCS3A01G126500 chr3D 92.000 50 4 0 228 277 84997235 84997186 1.500000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G126500 chr3A 102097678 102100698 3020 True 5579.0 5579 100.0000 1 3021 1 chr3A.!!$R1 3020
1 TraesCS3A01G126500 chr3A 175849845 175852624 2779 False 1042.0 1886 80.9795 275 3014 2 chr3A.!!$F1 2739
2 TraesCS3A01G126500 chr2B 495218064 495219782 1718 False 2080.0 2080 88.5100 988 2715 1 chr2B.!!$F1 1727
3 TraesCS3A01G126500 chr5B 600365647 600367618 1971 False 1153.0 2071 89.3020 988 3018 2 chr5B.!!$F1 2030
4 TraesCS3A01G126500 chr7A 16983294 16986070 2776 False 1047.5 1917 80.7345 277 3014 2 chr7A.!!$F1 2737
5 TraesCS3A01G126500 chr4A 70799882 70802659 2777 True 1026.0 1869 80.7080 276 3014 2 chr4A.!!$R1 2738
6 TraesCS3A01G126500 chr6A 615445422 615446656 1234 True 1849.0 1849 93.6890 277 1512 1 chr6A.!!$R1 1235
7 TraesCS3A01G126500 chr6A 135441845 135443968 2123 True 906.5 1622 84.5220 935 3018 2 chr6A.!!$R2 2083
8 TraesCS3A01G126500 chr1A 255746036 255748102 2066 True 1847.0 1847 82.9360 934 3014 1 chr1A.!!$R1 2080
9 TraesCS3A01G126500 chr3B 783208818 783210936 2118 False 941.5 1672 86.0285 934 3014 2 chr3B.!!$F1 2080
10 TraesCS3A01G126500 chr4B 481576980 481578039 1059 True 384.1 708 81.3535 992 2039 2 chr4B.!!$R1 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.028110 GCCGAATTGCCTTGATCGAC 59.972 55.0 0.0 0.0 37.48 4.20 F
217 218 0.179121 TTCCGATACTGTTGCGCGAT 60.179 50.0 12.1 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1762 0.947244 GTGTTCCACAGCTCCAACTG 59.053 55.000 0.0 0.0 43.59 3.16 R
2117 2225 1.479323 CAAGATTCCACAAGGGCATGG 59.521 52.381 0.0 0.0 37.32 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.902086 GACCTCCGCTCCCGCTAC 61.902 72.222 0.00 0.00 0.00 3.58
29 30 4.478195 CGCTACGGAACACTCTGG 57.522 61.111 0.00 0.00 31.52 3.86
30 31 1.805945 CGCTACGGAACACTCTGGC 60.806 63.158 0.00 0.00 31.52 4.85
31 32 1.292223 GCTACGGAACACTCTGGCA 59.708 57.895 0.00 0.00 31.52 4.92
32 33 0.108138 GCTACGGAACACTCTGGCAT 60.108 55.000 0.00 0.00 31.52 4.40
33 34 1.676014 GCTACGGAACACTCTGGCATT 60.676 52.381 0.00 0.00 31.52 3.56
34 35 2.699954 CTACGGAACACTCTGGCATTT 58.300 47.619 0.00 0.00 31.52 2.32
35 36 1.981256 ACGGAACACTCTGGCATTTT 58.019 45.000 0.00 0.00 31.52 1.82
36 37 1.880027 ACGGAACACTCTGGCATTTTC 59.120 47.619 0.00 0.00 31.52 2.29
37 38 2.154462 CGGAACACTCTGGCATTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
38 39 2.554032 CGGAACACTCTGGCATTTTCTT 59.446 45.455 0.00 0.00 0.00 2.52
39 40 3.365364 CGGAACACTCTGGCATTTTCTTC 60.365 47.826 0.00 0.00 0.00 2.87
40 41 3.823304 GGAACACTCTGGCATTTTCTTCT 59.177 43.478 0.00 0.00 0.00 2.85
41 42 4.083057 GGAACACTCTGGCATTTTCTTCTC 60.083 45.833 0.00 0.00 0.00 2.87
42 43 3.416156 ACACTCTGGCATTTTCTTCTCC 58.584 45.455 0.00 0.00 0.00 3.71
43 44 3.073650 ACACTCTGGCATTTTCTTCTCCT 59.926 43.478 0.00 0.00 0.00 3.69
44 45 3.688673 CACTCTGGCATTTTCTTCTCCTC 59.311 47.826 0.00 0.00 0.00 3.71
45 46 2.935201 CTCTGGCATTTTCTTCTCCTCG 59.065 50.000 0.00 0.00 0.00 4.63
46 47 2.303022 TCTGGCATTTTCTTCTCCTCGT 59.697 45.455 0.00 0.00 0.00 4.18
47 48 2.675348 CTGGCATTTTCTTCTCCTCGTC 59.325 50.000 0.00 0.00 0.00 4.20
48 49 2.010497 GGCATTTTCTTCTCCTCGTCC 58.990 52.381 0.00 0.00 0.00 4.79
49 50 2.355209 GGCATTTTCTTCTCCTCGTCCT 60.355 50.000 0.00 0.00 0.00 3.85
50 51 2.675348 GCATTTTCTTCTCCTCGTCCTG 59.325 50.000 0.00 0.00 0.00 3.86
51 52 3.265791 CATTTTCTTCTCCTCGTCCTGG 58.734 50.000 0.00 0.00 0.00 4.45
52 53 2.304221 TTTCTTCTCCTCGTCCTGGA 57.696 50.000 0.00 0.00 0.00 3.86
58 59 1.077357 TCCTCGTCCTGGAGAGAGC 60.077 63.158 18.59 0.00 36.65 4.09
59 60 2.477176 CCTCGTCCTGGAGAGAGCG 61.477 68.421 18.59 9.73 36.65 5.03
60 61 1.450491 CTCGTCCTGGAGAGAGCGA 60.450 63.158 13.91 10.25 36.65 4.93
61 62 1.002502 TCGTCCTGGAGAGAGCGAA 60.003 57.895 0.00 0.00 0.00 4.70
62 63 1.027255 TCGTCCTGGAGAGAGCGAAG 61.027 60.000 0.00 0.00 0.00 3.79
63 64 1.027255 CGTCCTGGAGAGAGCGAAGA 61.027 60.000 0.00 0.00 0.00 2.87
64 65 1.178276 GTCCTGGAGAGAGCGAAGAA 58.822 55.000 0.00 0.00 0.00 2.52
65 66 1.134175 GTCCTGGAGAGAGCGAAGAAG 59.866 57.143 0.00 0.00 0.00 2.85
66 67 1.004862 TCCTGGAGAGAGCGAAGAAGA 59.995 52.381 0.00 0.00 0.00 2.87
67 68 1.134175 CCTGGAGAGAGCGAAGAAGAC 59.866 57.143 0.00 0.00 0.00 3.01
68 69 0.805614 TGGAGAGAGCGAAGAAGACG 59.194 55.000 0.00 0.00 0.00 4.18
69 70 0.099791 GGAGAGAGCGAAGAAGACGG 59.900 60.000 0.00 0.00 0.00 4.79
70 71 0.524604 GAGAGAGCGAAGAAGACGGC 60.525 60.000 0.00 0.00 0.00 5.68
71 72 1.517475 GAGAGCGAAGAAGACGGCC 60.517 63.158 0.00 0.00 0.00 6.13
72 73 2.509561 GAGCGAAGAAGACGGCCC 60.510 66.667 0.00 0.00 0.00 5.80
73 74 4.083862 AGCGAAGAAGACGGCCCC 62.084 66.667 0.00 0.00 0.00 5.80
74 75 4.083862 GCGAAGAAGACGGCCCCT 62.084 66.667 0.00 0.00 0.00 4.79
75 76 2.125512 CGAAGAAGACGGCCCCTG 60.126 66.667 0.00 0.00 0.00 4.45
76 77 2.943978 CGAAGAAGACGGCCCCTGT 61.944 63.158 0.00 0.00 0.00 4.00
77 78 1.376037 GAAGAAGACGGCCCCTGTG 60.376 63.158 0.00 0.00 0.00 3.66
78 79 2.804828 GAAGAAGACGGCCCCTGTGG 62.805 65.000 0.00 0.00 37.09 4.17
79 80 3.319198 GAAGACGGCCCCTGTGGA 61.319 66.667 0.00 0.00 35.39 4.02
80 81 2.610859 AAGACGGCCCCTGTGGAT 60.611 61.111 0.00 0.00 35.39 3.41
81 82 2.876368 GAAGACGGCCCCTGTGGATG 62.876 65.000 0.00 0.00 35.39 3.51
82 83 4.489771 GACGGCCCCTGTGGATGG 62.490 72.222 0.00 0.00 35.39 3.51
84 85 3.492353 CGGCCCCTGTGGATGGAT 61.492 66.667 0.00 0.00 35.39 3.41
85 86 2.196776 GGCCCCTGTGGATGGATG 59.803 66.667 0.00 0.00 35.39 3.51
86 87 2.386100 GGCCCCTGTGGATGGATGA 61.386 63.158 0.00 0.00 35.39 2.92
87 88 1.614711 GCCCCTGTGGATGGATGAA 59.385 57.895 0.00 0.00 35.39 2.57
88 89 0.033208 GCCCCTGTGGATGGATGAAA 60.033 55.000 0.00 0.00 35.39 2.69
89 90 1.767759 CCCCTGTGGATGGATGAAAC 58.232 55.000 0.00 0.00 35.39 2.78
90 91 1.382522 CCCTGTGGATGGATGAAACG 58.617 55.000 0.00 0.00 0.00 3.60
91 92 0.734889 CCTGTGGATGGATGAAACGC 59.265 55.000 0.00 0.00 0.00 4.84
92 93 1.452110 CTGTGGATGGATGAAACGCA 58.548 50.000 0.00 0.00 0.00 5.24
93 94 1.399440 CTGTGGATGGATGAAACGCAG 59.601 52.381 0.00 0.00 33.99 5.18
94 95 0.734889 GTGGATGGATGAAACGCAGG 59.265 55.000 0.00 0.00 0.00 4.85
95 96 1.031571 TGGATGGATGAAACGCAGGC 61.032 55.000 0.00 0.00 0.00 4.85
96 97 0.749454 GGATGGATGAAACGCAGGCT 60.749 55.000 0.00 0.00 0.00 4.58
97 98 1.098050 GATGGATGAAACGCAGGCTT 58.902 50.000 0.00 0.00 0.00 4.35
98 99 1.064654 GATGGATGAAACGCAGGCTTC 59.935 52.381 0.00 0.00 0.00 3.86
99 100 0.960364 TGGATGAAACGCAGGCTTCC 60.960 55.000 0.00 0.00 0.00 3.46
100 101 0.960364 GGATGAAACGCAGGCTTCCA 60.960 55.000 0.00 0.00 0.00 3.53
101 102 0.169009 GATGAAACGCAGGCTTCCAC 59.831 55.000 0.00 0.00 0.00 4.02
102 103 1.577328 ATGAAACGCAGGCTTCCACG 61.577 55.000 0.00 0.00 0.00 4.94
103 104 2.966309 GAAACGCAGGCTTCCACGG 61.966 63.158 0.00 0.00 31.25 4.94
104 105 3.469863 AAACGCAGGCTTCCACGGA 62.470 57.895 0.00 0.00 31.25 4.69
105 106 2.951475 AAACGCAGGCTTCCACGGAA 62.951 55.000 0.00 0.00 31.25 4.30
106 107 3.423154 CGCAGGCTTCCACGGAAC 61.423 66.667 0.00 0.00 0.00 3.62
107 108 3.056328 GCAGGCTTCCACGGAACC 61.056 66.667 0.00 2.28 0.00 3.62
108 109 2.742372 CAGGCTTCCACGGAACCG 60.742 66.667 11.83 11.83 46.03 4.44
109 110 4.699522 AGGCTTCCACGGAACCGC 62.700 66.667 13.32 0.00 44.19 5.68
111 112 3.723348 GCTTCCACGGAACCGCAC 61.723 66.667 13.32 0.00 44.19 5.34
112 113 3.411351 CTTCCACGGAACCGCACG 61.411 66.667 13.32 2.35 44.19 5.34
113 114 4.224274 TTCCACGGAACCGCACGT 62.224 61.111 13.32 0.00 45.25 4.49
114 115 2.752322 CTTCCACGGAACCGCACGTA 62.752 60.000 13.32 0.00 42.04 3.57
115 116 3.107661 CCACGGAACCGCACGTAC 61.108 66.667 13.32 0.00 42.04 3.67
116 117 2.049802 CACGGAACCGCACGTACT 60.050 61.111 13.32 0.00 42.04 2.73
117 118 2.084681 CACGGAACCGCACGTACTC 61.085 63.158 13.32 0.00 42.04 2.59
118 119 2.505557 CGGAACCGCACGTACTCC 60.506 66.667 0.00 0.00 0.00 3.85
119 120 2.125793 GGAACCGCACGTACTCCC 60.126 66.667 0.00 0.00 0.00 4.30
120 121 2.643232 GGAACCGCACGTACTCCCT 61.643 63.158 0.00 0.00 0.00 4.20
121 122 1.315257 GGAACCGCACGTACTCCCTA 61.315 60.000 0.00 0.00 0.00 3.53
122 123 0.179153 GAACCGCACGTACTCCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
123 124 1.598701 AACCGCACGTACTCCCTACC 61.599 60.000 0.00 0.00 0.00 3.18
124 125 2.048023 CCGCACGTACTCCCTACCA 61.048 63.158 0.00 0.00 0.00 3.25
125 126 1.138247 CGCACGTACTCCCTACCAC 59.862 63.158 0.00 0.00 0.00 4.16
126 127 1.588824 CGCACGTACTCCCTACCACA 61.589 60.000 0.00 0.00 0.00 4.17
127 128 0.604578 GCACGTACTCCCTACCACAA 59.395 55.000 0.00 0.00 0.00 3.33
128 129 1.403780 GCACGTACTCCCTACCACAAG 60.404 57.143 0.00 0.00 0.00 3.16
129 130 1.891150 CACGTACTCCCTACCACAAGT 59.109 52.381 0.00 0.00 0.00 3.16
130 131 3.084039 CACGTACTCCCTACCACAAGTA 58.916 50.000 0.00 0.00 0.00 2.24
131 132 3.128242 CACGTACTCCCTACCACAAGTAG 59.872 52.174 0.00 0.00 46.99 2.57
138 139 2.969628 CTACCACAAGTAGGCTCCTG 57.030 55.000 0.00 0.00 44.19 3.86
139 140 2.180276 CTACCACAAGTAGGCTCCTGT 58.820 52.381 0.00 0.00 44.19 4.00
140 141 2.320681 ACCACAAGTAGGCTCCTGTA 57.679 50.000 0.00 0.00 0.00 2.74
141 142 2.834113 ACCACAAGTAGGCTCCTGTAT 58.166 47.619 0.00 0.00 0.00 2.29
142 143 3.990369 ACCACAAGTAGGCTCCTGTATA 58.010 45.455 0.00 0.00 0.00 1.47
143 144 3.705072 ACCACAAGTAGGCTCCTGTATAC 59.295 47.826 0.00 0.00 0.00 1.47
144 145 3.069729 CCACAAGTAGGCTCCTGTATACC 59.930 52.174 0.00 0.00 0.00 2.73
145 146 3.069729 CACAAGTAGGCTCCTGTATACCC 59.930 52.174 0.00 0.00 0.00 3.69
146 147 3.305720 CAAGTAGGCTCCTGTATACCCA 58.694 50.000 0.00 0.00 0.00 4.51
147 148 2.960163 AGTAGGCTCCTGTATACCCAC 58.040 52.381 0.00 0.00 0.00 4.61
148 149 2.246588 AGTAGGCTCCTGTATACCCACA 59.753 50.000 0.00 0.00 0.00 4.17
149 150 1.794714 AGGCTCCTGTATACCCACAG 58.205 55.000 0.00 0.00 44.60 3.66
150 151 0.106894 GGCTCCTGTATACCCACAGC 59.893 60.000 0.00 2.88 43.82 4.40
151 152 1.123928 GCTCCTGTATACCCACAGCT 58.876 55.000 0.00 0.00 43.82 4.24
152 153 2.317040 GCTCCTGTATACCCACAGCTA 58.683 52.381 0.00 0.00 43.82 3.32
153 154 2.036089 GCTCCTGTATACCCACAGCTAC 59.964 54.545 0.00 0.00 43.82 3.58
154 155 3.296854 CTCCTGTATACCCACAGCTACA 58.703 50.000 0.00 0.00 43.82 2.74
155 156 3.296854 TCCTGTATACCCACAGCTACAG 58.703 50.000 0.00 2.61 43.82 2.74
156 157 2.224066 CCTGTATACCCACAGCTACAGC 60.224 54.545 0.00 0.00 43.82 4.40
157 158 1.760613 TGTATACCCACAGCTACAGCC 59.239 52.381 0.00 0.00 43.38 4.85
158 159 1.037493 TATACCCACAGCTACAGCCG 58.963 55.000 0.00 0.00 43.38 5.52
159 160 0.976073 ATACCCACAGCTACAGCCGT 60.976 55.000 0.00 0.00 43.38 5.68
160 161 1.189524 TACCCACAGCTACAGCCGTT 61.190 55.000 0.00 0.00 43.38 4.44
161 162 2.034879 CCCACAGCTACAGCCGTTG 61.035 63.158 0.00 0.00 43.38 4.10
162 163 2.034879 CCACAGCTACAGCCGTTGG 61.035 63.158 0.00 0.00 43.38 3.77
163 164 2.034879 CACAGCTACAGCCGTTGGG 61.035 63.158 0.00 0.00 43.38 4.12
164 165 2.347490 CAGCTACAGCCGTTGGGT 59.653 61.111 0.00 0.00 43.38 4.51
165 166 1.741770 CAGCTACAGCCGTTGGGTC 60.742 63.158 0.00 0.00 43.38 4.46
166 167 2.214216 AGCTACAGCCGTTGGGTCA 61.214 57.895 0.00 0.00 43.38 4.02
167 168 2.033194 GCTACAGCCGTTGGGTCAC 61.033 63.158 0.00 0.00 34.97 3.67
168 169 1.671742 CTACAGCCGTTGGGTCACT 59.328 57.895 0.00 0.00 34.97 3.41
169 170 0.389948 CTACAGCCGTTGGGTCACTC 60.390 60.000 0.00 0.00 34.97 3.51
170 171 2.149803 TACAGCCGTTGGGTCACTCG 62.150 60.000 0.00 0.00 34.97 4.18
171 172 2.915659 AGCCGTTGGGTCACTCGA 60.916 61.111 0.00 0.00 34.97 4.04
172 173 2.432628 GCCGTTGGGTCACTCGAG 60.433 66.667 11.84 11.84 34.97 4.04
173 174 3.048602 CCGTTGGGTCACTCGAGT 58.951 61.111 13.58 13.58 0.00 4.18
174 175 1.080705 CCGTTGGGTCACTCGAGTC 60.081 63.158 16.96 5.28 0.00 3.36
175 176 1.442184 CGTTGGGTCACTCGAGTCG 60.442 63.158 16.96 10.70 0.00 4.18
176 177 1.733399 GTTGGGTCACTCGAGTCGC 60.733 63.158 16.96 14.35 0.00 5.19
177 178 1.901948 TTGGGTCACTCGAGTCGCT 60.902 57.895 16.96 0.00 0.00 4.93
178 179 2.142357 TTGGGTCACTCGAGTCGCTG 62.142 60.000 16.96 4.58 0.00 5.18
179 180 2.505118 GGTCACTCGAGTCGCTGC 60.505 66.667 16.96 4.06 0.00 5.25
180 181 2.505118 GTCACTCGAGTCGCTGCC 60.505 66.667 16.96 0.00 0.00 4.85
181 182 4.103103 TCACTCGAGTCGCTGCCG 62.103 66.667 16.96 2.43 0.00 5.69
182 183 4.103103 CACTCGAGTCGCTGCCGA 62.103 66.667 16.96 0.00 42.01 5.54
183 184 3.362797 ACTCGAGTCGCTGCCGAA 61.363 61.111 13.58 0.00 46.34 4.30
184 185 2.103143 CTCGAGTCGCTGCCGAAT 59.897 61.111 7.92 0.00 46.34 3.34
185 186 1.517257 CTCGAGTCGCTGCCGAATT 60.517 57.895 7.92 0.00 46.34 2.17
186 187 1.746727 CTCGAGTCGCTGCCGAATTG 61.747 60.000 7.92 0.00 46.34 2.32
187 188 2.401195 GAGTCGCTGCCGAATTGC 59.599 61.111 0.00 0.00 46.34 3.56
188 189 3.100862 GAGTCGCTGCCGAATTGCC 62.101 63.158 0.00 0.00 46.34 4.52
189 190 3.127533 GTCGCTGCCGAATTGCCT 61.128 61.111 0.00 0.00 46.34 4.75
190 191 2.359850 TCGCTGCCGAATTGCCTT 60.360 55.556 0.00 0.00 41.17 4.35
191 192 2.202518 CGCTGCCGAATTGCCTTG 60.203 61.111 0.00 0.00 36.29 3.61
192 193 2.689785 CGCTGCCGAATTGCCTTGA 61.690 57.895 0.00 0.00 36.29 3.02
193 194 1.811860 GCTGCCGAATTGCCTTGAT 59.188 52.632 0.00 0.00 0.00 2.57
194 195 0.248784 GCTGCCGAATTGCCTTGATC 60.249 55.000 0.00 0.00 0.00 2.92
195 196 0.028505 CTGCCGAATTGCCTTGATCG 59.971 55.000 0.00 0.00 35.19 3.69
196 197 0.392327 TGCCGAATTGCCTTGATCGA 60.392 50.000 0.00 0.00 37.48 3.59
197 198 0.028110 GCCGAATTGCCTTGATCGAC 59.972 55.000 0.00 0.00 37.48 4.20
198 199 1.656652 CCGAATTGCCTTGATCGACT 58.343 50.000 0.00 0.00 37.48 4.18
199 200 2.009774 CCGAATTGCCTTGATCGACTT 58.990 47.619 0.00 0.00 37.48 3.01
200 201 2.030946 CCGAATTGCCTTGATCGACTTC 59.969 50.000 0.00 0.00 37.48 3.01
201 202 2.030946 CGAATTGCCTTGATCGACTTCC 59.969 50.000 0.00 0.00 37.48 3.46
202 203 1.656652 ATTGCCTTGATCGACTTCCG 58.343 50.000 0.00 0.00 40.25 4.30
212 213 2.273370 TCGACTTCCGATACTGTTGC 57.727 50.000 0.00 0.00 43.23 4.17
213 214 0.914551 CGACTTCCGATACTGTTGCG 59.085 55.000 0.00 0.00 41.76 4.85
214 215 0.645868 GACTTCCGATACTGTTGCGC 59.354 55.000 0.00 0.00 0.00 6.09
215 216 1.076533 ACTTCCGATACTGTTGCGCG 61.077 55.000 0.00 0.00 0.00 6.86
216 217 0.800683 CTTCCGATACTGTTGCGCGA 60.801 55.000 12.10 0.00 0.00 5.87
217 218 0.179121 TTCCGATACTGTTGCGCGAT 60.179 50.000 12.10 0.00 0.00 4.58
218 219 0.664224 TCCGATACTGTTGCGCGATA 59.336 50.000 12.10 0.00 0.00 2.92
219 220 0.776451 CCGATACTGTTGCGCGATAC 59.224 55.000 12.10 7.26 0.00 2.24
220 221 1.472990 CGATACTGTTGCGCGATACA 58.527 50.000 12.10 12.18 0.00 2.29
221 222 1.187271 CGATACTGTTGCGCGATACAC 59.813 52.381 12.10 0.00 0.00 2.90
222 223 2.190161 GATACTGTTGCGCGATACACA 58.810 47.619 12.10 5.01 0.00 3.72
223 224 1.624487 TACTGTTGCGCGATACACAG 58.376 50.000 12.10 17.23 0.00 3.66
224 225 0.319555 ACTGTTGCGCGATACACAGT 60.320 50.000 20.54 20.54 34.12 3.55
225 226 1.068125 ACTGTTGCGCGATACACAGTA 60.068 47.619 23.19 1.10 36.77 2.74
226 227 1.320555 CTGTTGCGCGATACACAGTAC 59.679 52.381 12.10 0.00 0.00 2.73
227 228 1.336056 TGTTGCGCGATACACAGTACA 60.336 47.619 12.10 0.00 0.00 2.90
228 229 1.320555 GTTGCGCGATACACAGTACAG 59.679 52.381 12.10 0.00 0.00 2.74
229 230 0.524414 TGCGCGATACACAGTACAGT 59.476 50.000 12.10 0.00 0.00 3.55
230 231 0.914551 GCGCGATACACAGTACAGTG 59.085 55.000 12.10 16.09 44.93 3.66
231 232 1.466866 GCGCGATACACAGTACAGTGA 60.467 52.381 23.48 8.81 42.05 3.41
232 233 2.174764 CGCGATACACAGTACAGTGAC 58.825 52.381 23.48 13.06 42.05 3.67
233 234 2.174764 GCGATACACAGTACAGTGACG 58.825 52.381 23.48 22.17 42.05 4.35
234 235 2.174764 CGATACACAGTACAGTGACGC 58.825 52.381 23.48 11.01 42.05 5.19
235 236 2.527100 GATACACAGTACAGTGACGCC 58.473 52.381 23.48 7.12 42.05 5.68
236 237 1.612676 TACACAGTACAGTGACGCCT 58.387 50.000 23.48 4.74 42.05 5.52
237 238 1.612676 ACACAGTACAGTGACGCCTA 58.387 50.000 23.48 0.00 42.05 3.93
238 239 1.268899 ACACAGTACAGTGACGCCTAC 59.731 52.381 23.48 0.00 42.05 3.18
239 240 1.540267 CACAGTACAGTGACGCCTACT 59.460 52.381 12.75 0.00 42.05 2.57
244 245 2.153913 CAGTGACGCCTACTGTTGC 58.846 57.895 6.23 0.00 40.43 4.17
245 246 0.599991 CAGTGACGCCTACTGTTGCA 60.600 55.000 6.23 0.00 40.43 4.08
246 247 0.319900 AGTGACGCCTACTGTTGCAG 60.320 55.000 0.00 0.00 37.52 4.41
247 248 0.319555 GTGACGCCTACTGTTGCAGA 60.320 55.000 2.91 0.00 35.18 4.26
248 249 0.608130 TGACGCCTACTGTTGCAGAT 59.392 50.000 2.91 0.00 35.18 2.90
249 250 1.822371 TGACGCCTACTGTTGCAGATA 59.178 47.619 2.91 0.00 35.18 1.98
250 251 2.194271 GACGCCTACTGTTGCAGATAC 58.806 52.381 2.91 0.00 35.18 2.24
251 252 1.825474 ACGCCTACTGTTGCAGATACT 59.175 47.619 2.91 0.00 35.18 2.12
252 253 2.159226 ACGCCTACTGTTGCAGATACTC 60.159 50.000 2.91 0.00 35.18 2.59
253 254 2.099921 CGCCTACTGTTGCAGATACTCT 59.900 50.000 2.91 0.00 35.18 3.24
254 255 3.452474 GCCTACTGTTGCAGATACTCTG 58.548 50.000 2.91 0.00 46.90 3.35
255 256 3.739519 GCCTACTGTTGCAGATACTCTGG 60.740 52.174 6.30 0.00 44.43 3.86
256 257 3.449018 CCTACTGTTGCAGATACTCTGGT 59.551 47.826 6.30 0.00 44.43 4.00
257 258 4.081420 CCTACTGTTGCAGATACTCTGGTT 60.081 45.833 6.30 0.00 44.43 3.67
258 259 3.668447 ACTGTTGCAGATACTCTGGTTG 58.332 45.455 6.30 0.00 44.43 3.77
259 260 3.005554 CTGTTGCAGATACTCTGGTTGG 58.994 50.000 6.30 0.00 44.43 3.77
260 261 2.637382 TGTTGCAGATACTCTGGTTGGA 59.363 45.455 6.30 0.00 44.43 3.53
261 262 3.265791 GTTGCAGATACTCTGGTTGGAG 58.734 50.000 6.30 0.00 44.43 3.86
262 263 1.208052 TGCAGATACTCTGGTTGGAGC 59.792 52.381 6.30 0.00 44.43 4.70
263 264 1.208052 GCAGATACTCTGGTTGGAGCA 59.792 52.381 6.30 0.00 44.43 4.26
264 265 2.158842 GCAGATACTCTGGTTGGAGCAT 60.159 50.000 6.30 0.00 44.43 3.79
265 266 3.726607 CAGATACTCTGGTTGGAGCATC 58.273 50.000 0.00 0.00 40.71 3.91
266 267 3.387374 CAGATACTCTGGTTGGAGCATCT 59.613 47.826 0.00 0.00 43.38 2.90
267 268 4.036518 AGATACTCTGGTTGGAGCATCTT 58.963 43.478 0.00 0.00 41.20 2.40
268 269 2.486472 ACTCTGGTTGGAGCATCTTG 57.514 50.000 0.00 0.00 36.87 3.02
269 270 1.004044 ACTCTGGTTGGAGCATCTTGG 59.996 52.381 0.00 0.00 36.87 3.61
270 271 0.329261 TCTGGTTGGAGCATCTTGGG 59.671 55.000 0.00 0.00 33.73 4.12
271 272 0.682209 CTGGTTGGAGCATCTTGGGG 60.682 60.000 0.00 0.00 33.73 4.96
272 273 1.384191 GGTTGGAGCATCTTGGGGT 59.616 57.895 0.00 0.00 33.73 4.95
273 274 0.251787 GGTTGGAGCATCTTGGGGTT 60.252 55.000 0.00 0.00 33.73 4.11
279 280 2.617021 GGAGCATCTTGGGGTTAACGAA 60.617 50.000 0.00 0.00 33.73 3.85
348 349 6.263344 CGTTGGTAGATTTCGTCAAGATCTA 58.737 40.000 0.00 0.00 32.68 1.98
352 353 5.343593 GGTAGATTTCGTCAAGATCTATGCG 59.656 44.000 0.00 0.81 35.52 4.73
358 359 1.112916 TCAAGATCTATGCGGCCCGA 61.113 55.000 7.68 0.00 0.00 5.14
371 372 0.874607 GGCCCGAGTGCGTATAAGTG 60.875 60.000 0.00 0.00 35.23 3.16
402 403 5.006358 CGAAGCGGCAACTTTATACAATAGT 59.994 40.000 1.45 0.00 0.00 2.12
490 491 4.736126 TTTAATCATGCTCTCGTCCTCA 57.264 40.909 0.00 0.00 0.00 3.86
493 494 0.665298 TCATGCTCTCGTCCTCATCG 59.335 55.000 0.00 0.00 0.00 3.84
498 499 1.066303 GCTCTCGTCCTCATCGACAAT 59.934 52.381 0.00 0.00 33.71 2.71
513 514 2.260481 GACAATTCCGTCTCGTCTTCC 58.740 52.381 0.00 0.00 32.92 3.46
533 534 3.115803 TCCCTCCCCATCCATATTCTCTT 60.116 47.826 0.00 0.00 0.00 2.85
584 585 0.519077 CTTGCCGCAGTTTTCCTCTC 59.481 55.000 0.00 0.00 0.00 3.20
606 607 8.578448 TCTCTGATATGAATCCATGAGTAGAG 57.422 38.462 0.00 0.00 33.82 2.43
626 627 2.428890 AGTGGAAGCGGAGTAGATCTTG 59.571 50.000 0.00 0.00 0.00 3.02
629 630 4.021229 TGGAAGCGGAGTAGATCTTGTTA 58.979 43.478 0.00 0.00 0.00 2.41
703 758 1.911057 AGCAACCTTAGCCAAAGTCC 58.089 50.000 0.00 0.00 32.89 3.85
719 774 1.097547 GTCCCATGTGATTGGAGGCG 61.098 60.000 0.00 0.00 39.25 5.52
727 782 0.623194 TGATTGGAGGCGGGAATCAA 59.377 50.000 5.86 0.00 34.05 2.57
779 851 6.286240 TCTTATCCGGTGATCTATCCATTG 57.714 41.667 0.00 0.00 32.18 2.82
782 854 2.296190 TCCGGTGATCTATCCATTGTCG 59.704 50.000 0.00 0.00 0.00 4.35
1020 1096 5.983333 ATATGGAAATTGAGAGGGACAGT 57.017 39.130 0.00 0.00 0.00 3.55
1098 1174 9.683069 AATTTCAATCAACAGTAAGTTCACATC 57.317 29.630 0.00 0.00 38.74 3.06
1108 1184 7.933577 AACAGTAAGTTCACATCTTTGAGATGA 59.066 33.333 21.21 1.68 44.89 2.92
1352 1442 8.031277 GCAGGAAGTATGTGAAGAAATCATTTT 58.969 33.333 0.00 0.00 40.97 1.82
1354 1444 9.300681 AGGAAGTATGTGAAGAAATCATTTTCA 57.699 29.630 1.74 0.00 43.09 2.69
1564 1654 7.776107 AGAGTCAGATTCGAATGAAAGATACA 58.224 34.615 16.96 0.00 37.71 2.29
1566 1656 8.362860 AGTCAGATTCGAATGAAAGATACATG 57.637 34.615 16.96 0.00 37.71 3.21
1575 1665 7.921214 TCGAATGAAAGATACATGGAGTAAGAC 59.079 37.037 0.00 0.00 36.05 3.01
1649 1749 7.225538 TGTTCTCAACATGTTTGTTTGTTTTGT 59.774 29.630 8.77 0.00 43.57 2.83
1662 1762 3.764237 TGTTTTGTACAGAGGAGGACC 57.236 47.619 0.00 0.00 31.68 4.46
1813 1913 2.414161 GGTGCTTGGTTTCAGTATTCGC 60.414 50.000 0.00 0.00 0.00 4.70
1877 1977 2.037901 TGCAGGAATTCACTTGCCAAA 58.962 42.857 19.61 5.33 41.15 3.28
1897 1997 7.651704 TGCCAAAGAGCAGTAAGTAAATTTTTC 59.348 33.333 0.00 0.00 38.00 2.29
1903 2003 9.516314 AGAGCAGTAAGTAAATTTTTCACAAAC 57.484 29.630 0.00 0.00 0.00 2.93
1906 2006 8.325282 GCAGTAAGTAAATTTTTCACAAACCAC 58.675 33.333 0.00 0.00 0.00 4.16
1912 2012 8.478877 AGTAAATTTTTCACAAACCACCATGTA 58.521 29.630 0.00 0.00 0.00 2.29
1924 2024 9.555727 ACAAACCACCATGTAGTAATATCATAC 57.444 33.333 0.00 0.00 0.00 2.39
1963 2071 9.586435 TCAATGTACAATGTCTTAGTATGTCTG 57.414 33.333 10.64 0.00 0.00 3.51
1986 2094 7.225341 TCTGATGACATTGAATCTTATTCCACG 59.775 37.037 0.00 0.00 0.00 4.94
2002 2110 3.541632 TCCACGATTATCTTTTCAGGGC 58.458 45.455 0.00 0.00 0.00 5.19
2007 2115 4.878397 ACGATTATCTTTTCAGGGCTTCAG 59.122 41.667 0.00 0.00 0.00 3.02
2061 2169 0.395586 TTGCAAGGCAACACTCAGGT 60.396 50.000 0.00 0.00 43.99 4.00
2069 2177 3.003480 GGCAACACTCAGGTTACATCTC 58.997 50.000 0.00 0.00 0.00 2.75
2082 2190 9.076781 TCAGGTTACATCTCAATGAAAATTCAA 57.923 29.630 0.00 0.00 41.13 2.69
2117 2225 2.686405 AGTTTTTCGGGAGGAACACAAC 59.314 45.455 0.00 0.00 33.42 3.32
2258 2367 7.893833 AGGGTTAATTCTATAGTTGCTGGTTTT 59.106 33.333 0.00 0.00 0.00 2.43
2348 2457 2.029739 TGAAACGCTTCAGGACGACATA 60.030 45.455 0.00 0.00 36.62 2.29
2360 2469 5.416639 TCAGGACGACATAGCTAAAACACTA 59.583 40.000 0.00 0.00 0.00 2.74
2429 2538 2.291089 TGCACAGGTGGATGATGACAAT 60.291 45.455 1.10 0.00 0.00 2.71
2511 2620 5.438761 AGAGTGCAATAACTTTTGACACC 57.561 39.130 0.00 0.00 35.81 4.16
2598 2707 4.270834 AGAGTGTAATCTTCGCTGGAGTA 58.729 43.478 0.00 0.00 0.00 2.59
2667 2776 2.142356 TTGTTGCTATGATGGGTGGG 57.858 50.000 0.00 0.00 0.00 4.61
2729 2839 1.324736 CAAGACGGTTATCGCTTGCTC 59.675 52.381 8.52 0.00 41.77 4.26
2744 2854 4.790140 CGCTTGCTCTTTACATCATGTTTC 59.210 41.667 0.00 0.00 0.00 2.78
2745 2855 5.391310 CGCTTGCTCTTTACATCATGTTTCT 60.391 40.000 0.00 0.00 0.00 2.52
2749 2859 6.902341 TGCTCTTTACATCATGTTTCTTGTC 58.098 36.000 0.00 0.00 0.00 3.18
2765 2875 9.337396 TGTTTCTTGTCTTAGTAACATCACAAT 57.663 29.630 0.00 0.00 32.64 2.71
2769 2879 9.554395 TCTTGTCTTAGTAACATCACAATTTGA 57.446 29.630 2.79 0.00 39.11 2.69
2855 3027 5.416952 ACAATTTTGTTCAGATCAGGCTAGG 59.583 40.000 0.00 0.00 38.47 3.02
2877 3049 2.740580 GCCATTGGAAATGCAGTCATGG 60.741 50.000 6.95 12.10 32.23 3.66
2878 3050 2.546778 CATTGGAAATGCAGTCATGGC 58.453 47.619 0.00 0.00 32.23 4.40
2895 3067 1.004628 TGGCAGAGCTTCCTAATGCAA 59.995 47.619 0.00 0.00 36.23 4.08
2896 3068 1.403323 GGCAGAGCTTCCTAATGCAAC 59.597 52.381 0.00 0.00 36.23 4.17
2950 3122 2.508526 GGCTCATGAACTTCTTGGTGT 58.491 47.619 0.00 0.00 0.00 4.16
2960 3132 5.941058 TGAACTTCTTGGTGTTGTTTACAGA 59.059 36.000 0.00 0.00 37.45 3.41
2963 3135 7.404671 ACTTCTTGGTGTTGTTTACAGAAAT 57.595 32.000 0.00 0.00 37.45 2.17
2972 3144 7.201487 GGTGTTGTTTACAGAAATCACAAAACC 60.201 37.037 6.88 6.88 37.45 3.27
2978 3150 5.343307 ACAGAAATCACAAAACCTTTGCT 57.657 34.783 0.00 0.00 0.00 3.91
3014 3186 9.045223 CATAAGCTAGTAAATCACATGCTAACA 57.955 33.333 0.00 0.00 37.10 2.41
3018 3190 9.046296 AGCTAGTAAATCACATGCTAACAATAC 57.954 33.333 0.00 0.00 36.59 1.89
3019 3191 8.826710 GCTAGTAAATCACATGCTAACAATACA 58.173 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.805945 GCCAGAGTGTTCCGTAGCG 60.806 63.158 0.00 0.00 0.00 4.26
13 14 0.108138 ATGCCAGAGTGTTCCGTAGC 60.108 55.000 0.00 0.00 0.00 3.58
14 15 2.386661 AATGCCAGAGTGTTCCGTAG 57.613 50.000 0.00 0.00 0.00 3.51
15 16 2.851263 AAATGCCAGAGTGTTCCGTA 57.149 45.000 0.00 0.00 0.00 4.02
16 17 1.880027 GAAAATGCCAGAGTGTTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
17 18 2.154462 AGAAAATGCCAGAGTGTTCCG 58.846 47.619 0.00 0.00 0.00 4.30
18 19 3.823304 AGAAGAAAATGCCAGAGTGTTCC 59.177 43.478 0.00 0.00 0.00 3.62
19 20 4.083057 GGAGAAGAAAATGCCAGAGTGTTC 60.083 45.833 0.00 0.00 0.00 3.18
20 21 3.823304 GGAGAAGAAAATGCCAGAGTGTT 59.177 43.478 0.00 0.00 0.00 3.32
21 22 3.073650 AGGAGAAGAAAATGCCAGAGTGT 59.926 43.478 0.00 0.00 0.00 3.55
22 23 3.683802 AGGAGAAGAAAATGCCAGAGTG 58.316 45.455 0.00 0.00 0.00 3.51
23 24 3.618507 CGAGGAGAAGAAAATGCCAGAGT 60.619 47.826 0.00 0.00 0.00 3.24
24 25 2.935201 CGAGGAGAAGAAAATGCCAGAG 59.065 50.000 0.00 0.00 0.00 3.35
25 26 2.303022 ACGAGGAGAAGAAAATGCCAGA 59.697 45.455 0.00 0.00 0.00 3.86
26 27 2.675348 GACGAGGAGAAGAAAATGCCAG 59.325 50.000 0.00 0.00 0.00 4.85
27 28 2.615493 GGACGAGGAGAAGAAAATGCCA 60.615 50.000 0.00 0.00 0.00 4.92
28 29 2.010497 GGACGAGGAGAAGAAAATGCC 58.990 52.381 0.00 0.00 0.00 4.40
29 30 2.675348 CAGGACGAGGAGAAGAAAATGC 59.325 50.000 0.00 0.00 0.00 3.56
30 31 3.055819 TCCAGGACGAGGAGAAGAAAATG 60.056 47.826 0.00 0.00 0.00 2.32
31 32 3.173965 TCCAGGACGAGGAGAAGAAAAT 58.826 45.455 0.00 0.00 0.00 1.82
32 33 2.605257 TCCAGGACGAGGAGAAGAAAA 58.395 47.619 0.00 0.00 0.00 2.29
33 34 2.304221 TCCAGGACGAGGAGAAGAAA 57.696 50.000 0.00 0.00 0.00 2.52
40 41 1.077357 GCTCTCTCCAGGACGAGGA 60.077 63.158 13.18 0.00 0.00 3.71
41 42 2.477176 CGCTCTCTCCAGGACGAGG 61.477 68.421 13.18 7.55 0.00 4.63
42 43 1.027255 TTCGCTCTCTCCAGGACGAG 61.027 60.000 8.82 8.82 0.00 4.18
43 44 1.002502 TTCGCTCTCTCCAGGACGA 60.003 57.895 0.00 0.00 0.00 4.20
44 45 1.027255 TCTTCGCTCTCTCCAGGACG 61.027 60.000 0.00 0.00 0.00 4.79
45 46 1.134175 CTTCTTCGCTCTCTCCAGGAC 59.866 57.143 0.00 0.00 0.00 3.85
46 47 1.004862 TCTTCTTCGCTCTCTCCAGGA 59.995 52.381 0.00 0.00 0.00 3.86
47 48 1.134175 GTCTTCTTCGCTCTCTCCAGG 59.866 57.143 0.00 0.00 0.00 4.45
48 49 1.202132 CGTCTTCTTCGCTCTCTCCAG 60.202 57.143 0.00 0.00 0.00 3.86
49 50 0.805614 CGTCTTCTTCGCTCTCTCCA 59.194 55.000 0.00 0.00 0.00 3.86
50 51 0.099791 CCGTCTTCTTCGCTCTCTCC 59.900 60.000 0.00 0.00 0.00 3.71
51 52 0.524604 GCCGTCTTCTTCGCTCTCTC 60.525 60.000 0.00 0.00 0.00 3.20
52 53 1.509004 GCCGTCTTCTTCGCTCTCT 59.491 57.895 0.00 0.00 0.00 3.10
53 54 1.517475 GGCCGTCTTCTTCGCTCTC 60.517 63.158 0.00 0.00 0.00 3.20
54 55 2.574399 GGCCGTCTTCTTCGCTCT 59.426 61.111 0.00 0.00 0.00 4.09
55 56 2.509561 GGGCCGTCTTCTTCGCTC 60.510 66.667 0.00 0.00 0.00 5.03
56 57 4.083862 GGGGCCGTCTTCTTCGCT 62.084 66.667 0.00 0.00 0.00 4.93
57 58 4.083862 AGGGGCCGTCTTCTTCGC 62.084 66.667 0.00 0.00 0.00 4.70
58 59 2.125512 CAGGGGCCGTCTTCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
59 60 1.376037 CACAGGGGCCGTCTTCTTC 60.376 63.158 0.00 0.00 0.00 2.87
60 61 2.750350 CACAGGGGCCGTCTTCTT 59.250 61.111 0.00 0.00 0.00 2.52
61 62 3.322466 CCACAGGGGCCGTCTTCT 61.322 66.667 0.00 0.00 0.00 2.85
62 63 2.670148 ATCCACAGGGGCCGTCTTC 61.670 63.158 0.00 0.00 36.21 2.87
63 64 2.610859 ATCCACAGGGGCCGTCTT 60.611 61.111 0.00 0.00 36.21 3.01
64 65 3.402681 CATCCACAGGGGCCGTCT 61.403 66.667 0.00 0.00 36.21 4.18
65 66 4.489771 CCATCCACAGGGGCCGTC 62.490 72.222 0.00 0.00 36.21 4.79
67 68 3.492353 ATCCATCCACAGGGGCCG 61.492 66.667 0.00 0.00 36.21 6.13
68 69 1.936767 TTCATCCATCCACAGGGGCC 61.937 60.000 0.00 0.00 36.21 5.80
69 70 0.033208 TTTCATCCATCCACAGGGGC 60.033 55.000 0.00 0.00 36.21 5.80
70 71 1.767759 GTTTCATCCATCCACAGGGG 58.232 55.000 0.00 0.00 38.37 4.79
71 72 1.382522 CGTTTCATCCATCCACAGGG 58.617 55.000 0.00 0.00 0.00 4.45
72 73 0.734889 GCGTTTCATCCATCCACAGG 59.265 55.000 0.00 0.00 0.00 4.00
73 74 1.399440 CTGCGTTTCATCCATCCACAG 59.601 52.381 0.00 0.00 0.00 3.66
74 75 1.452110 CTGCGTTTCATCCATCCACA 58.548 50.000 0.00 0.00 0.00 4.17
75 76 0.734889 CCTGCGTTTCATCCATCCAC 59.265 55.000 0.00 0.00 0.00 4.02
76 77 1.031571 GCCTGCGTTTCATCCATCCA 61.032 55.000 0.00 0.00 0.00 3.41
77 78 0.749454 AGCCTGCGTTTCATCCATCC 60.749 55.000 0.00 0.00 0.00 3.51
78 79 1.064654 GAAGCCTGCGTTTCATCCATC 59.935 52.381 0.00 0.00 0.00 3.51
79 80 1.098050 GAAGCCTGCGTTTCATCCAT 58.902 50.000 0.00 0.00 0.00 3.41
80 81 0.960364 GGAAGCCTGCGTTTCATCCA 60.960 55.000 0.00 0.00 31.23 3.41
81 82 0.960364 TGGAAGCCTGCGTTTCATCC 60.960 55.000 0.00 0.00 31.23 3.51
82 83 0.169009 GTGGAAGCCTGCGTTTCATC 59.831 55.000 0.00 0.00 31.23 2.92
83 84 1.577328 CGTGGAAGCCTGCGTTTCAT 61.577 55.000 0.00 0.00 31.23 2.57
84 85 2.250939 CGTGGAAGCCTGCGTTTCA 61.251 57.895 0.00 0.00 31.23 2.69
85 86 2.556287 CGTGGAAGCCTGCGTTTC 59.444 61.111 0.00 0.00 0.00 2.78
86 87 2.951475 TTCCGTGGAAGCCTGCGTTT 62.951 55.000 0.00 0.00 0.00 3.60
87 88 3.469863 TTCCGTGGAAGCCTGCGTT 62.470 57.895 0.00 0.00 0.00 4.84
88 89 3.936203 TTCCGTGGAAGCCTGCGT 61.936 61.111 0.00 0.00 0.00 5.24
89 90 3.423154 GTTCCGTGGAAGCCTGCG 61.423 66.667 0.53 0.00 34.49 5.18
90 91 3.056328 GGTTCCGTGGAAGCCTGC 61.056 66.667 17.88 0.00 44.15 4.85
91 92 2.742372 CGGTTCCGTGGAAGCCTG 60.742 66.667 21.51 8.00 46.29 4.85
92 93 4.699522 GCGGTTCCGTGGAAGCCT 62.700 66.667 21.51 0.00 46.29 4.58
94 95 3.723348 GTGCGGTTCCGTGGAAGC 61.723 66.667 18.52 18.52 45.76 3.86
95 96 2.752322 TACGTGCGGTTCCGTGGAAG 62.752 60.000 12.81 0.00 37.91 3.46
96 97 2.854401 TACGTGCGGTTCCGTGGAA 61.854 57.895 12.81 0.00 37.91 3.53
97 98 3.293714 TACGTGCGGTTCCGTGGA 61.294 61.111 12.81 0.00 37.91 4.02
98 99 3.107661 GTACGTGCGGTTCCGTGG 61.108 66.667 12.81 5.19 37.91 4.94
99 100 2.049802 AGTACGTGCGGTTCCGTG 60.050 61.111 12.81 6.02 37.91 4.94
100 101 2.256461 GAGTACGTGCGGTTCCGT 59.744 61.111 12.81 0.00 40.87 4.69
101 102 2.505557 GGAGTACGTGCGGTTCCG 60.506 66.667 6.90 6.90 0.00 4.30
102 103 1.315257 TAGGGAGTACGTGCGGTTCC 61.315 60.000 0.00 0.00 0.00 3.62
103 104 0.179153 GTAGGGAGTACGTGCGGTTC 60.179 60.000 0.00 0.00 0.00 3.62
104 105 1.598701 GGTAGGGAGTACGTGCGGTT 61.599 60.000 0.00 0.00 31.59 4.44
105 106 2.048603 GGTAGGGAGTACGTGCGGT 61.049 63.158 0.00 0.00 31.59 5.68
106 107 2.048023 TGGTAGGGAGTACGTGCGG 61.048 63.158 0.00 0.00 31.59 5.69
107 108 1.138247 GTGGTAGGGAGTACGTGCG 59.862 63.158 0.00 0.00 31.59 5.34
108 109 0.604578 TTGTGGTAGGGAGTACGTGC 59.395 55.000 0.00 0.00 31.59 5.34
109 110 1.891150 ACTTGTGGTAGGGAGTACGTG 59.109 52.381 0.00 0.00 31.59 4.49
110 111 2.299326 ACTTGTGGTAGGGAGTACGT 57.701 50.000 0.00 0.00 31.59 3.57
119 120 2.180276 ACAGGAGCCTACTTGTGGTAG 58.820 52.381 0.00 0.00 45.45 3.18
120 121 2.320681 ACAGGAGCCTACTTGTGGTA 57.679 50.000 0.00 0.00 0.00 3.25
121 122 2.320681 TACAGGAGCCTACTTGTGGT 57.679 50.000 0.00 0.00 32.63 4.16
122 123 3.069729 GGTATACAGGAGCCTACTTGTGG 59.930 52.174 5.01 0.00 32.63 4.17
123 124 3.069729 GGGTATACAGGAGCCTACTTGTG 59.930 52.174 5.01 0.00 32.63 3.33
124 125 3.306613 GGGTATACAGGAGCCTACTTGT 58.693 50.000 5.01 0.00 34.63 3.16
125 126 3.069729 GTGGGTATACAGGAGCCTACTTG 59.930 52.174 5.01 0.00 35.40 3.16
126 127 3.306613 GTGGGTATACAGGAGCCTACTT 58.693 50.000 5.01 0.00 35.40 2.24
127 128 2.246588 TGTGGGTATACAGGAGCCTACT 59.753 50.000 5.01 0.00 35.40 2.57
128 129 2.628657 CTGTGGGTATACAGGAGCCTAC 59.371 54.545 5.01 0.00 43.35 3.18
129 130 2.958818 CTGTGGGTATACAGGAGCCTA 58.041 52.381 5.01 0.00 43.35 3.93
130 131 1.794714 CTGTGGGTATACAGGAGCCT 58.205 55.000 5.01 0.00 43.35 4.58
131 132 0.106894 GCTGTGGGTATACAGGAGCC 59.893 60.000 5.01 0.00 46.32 4.70
132 133 1.123928 AGCTGTGGGTATACAGGAGC 58.876 55.000 5.01 6.29 46.32 4.70
133 134 3.296854 TGTAGCTGTGGGTATACAGGAG 58.703 50.000 5.01 0.00 46.32 3.69
134 135 3.296854 CTGTAGCTGTGGGTATACAGGA 58.703 50.000 5.01 0.00 46.32 3.86
135 136 2.224066 GCTGTAGCTGTGGGTATACAGG 60.224 54.545 5.01 0.00 46.32 4.00
137 138 1.760613 GGCTGTAGCTGTGGGTATACA 59.239 52.381 5.01 0.00 41.70 2.29
138 139 1.269621 CGGCTGTAGCTGTGGGTATAC 60.270 57.143 0.00 0.00 42.29 1.47
139 140 1.037493 CGGCTGTAGCTGTGGGTATA 58.963 55.000 0.00 0.00 42.29 1.47
140 141 1.823295 CGGCTGTAGCTGTGGGTAT 59.177 57.895 0.00 0.00 42.29 2.73
141 142 3.294750 CGGCTGTAGCTGTGGGTA 58.705 61.111 0.00 0.00 42.29 3.69
148 149 2.214216 TGACCCAACGGCTGTAGCT 61.214 57.895 0.00 0.00 41.70 3.32
149 150 2.033194 GTGACCCAACGGCTGTAGC 61.033 63.158 0.00 0.00 41.14 3.58
150 151 0.389948 GAGTGACCCAACGGCTGTAG 60.390 60.000 0.00 0.00 0.00 2.74
151 152 1.669440 GAGTGACCCAACGGCTGTA 59.331 57.895 0.00 0.00 0.00 2.74
152 153 2.426023 GAGTGACCCAACGGCTGT 59.574 61.111 0.00 0.00 0.00 4.40
153 154 2.738521 CGAGTGACCCAACGGCTG 60.739 66.667 0.00 0.00 0.00 4.85
154 155 2.915659 TCGAGTGACCCAACGGCT 60.916 61.111 0.00 0.00 0.00 5.52
155 156 2.432628 CTCGAGTGACCCAACGGC 60.433 66.667 3.62 0.00 0.00 5.68
156 157 1.080705 GACTCGAGTGACCCAACGG 60.081 63.158 25.58 0.00 0.00 4.44
157 158 1.442184 CGACTCGAGTGACCCAACG 60.442 63.158 25.58 14.47 0.00 4.10
158 159 1.733399 GCGACTCGAGTGACCCAAC 60.733 63.158 25.58 5.37 0.00 3.77
159 160 1.901948 AGCGACTCGAGTGACCCAA 60.902 57.895 25.58 0.00 0.00 4.12
160 161 2.282251 AGCGACTCGAGTGACCCA 60.282 61.111 25.58 0.00 0.00 4.51
161 162 2.179517 CAGCGACTCGAGTGACCC 59.820 66.667 25.58 7.42 0.00 4.46
162 163 2.505118 GCAGCGACTCGAGTGACC 60.505 66.667 25.58 10.61 0.00 4.02
163 164 2.505118 GGCAGCGACTCGAGTGAC 60.505 66.667 25.58 14.58 0.00 3.67
164 165 4.103103 CGGCAGCGACTCGAGTGA 62.103 66.667 25.58 0.00 0.00 3.41
165 166 2.874010 ATTCGGCAGCGACTCGAGTG 62.874 60.000 25.58 16.03 34.33 3.51
166 167 2.214181 AATTCGGCAGCGACTCGAGT 62.214 55.000 20.18 20.18 34.33 4.18
167 168 1.517257 AATTCGGCAGCGACTCGAG 60.517 57.895 11.84 11.84 34.33 4.04
168 169 1.805539 CAATTCGGCAGCGACTCGA 60.806 57.895 1.63 0.00 0.00 4.04
169 170 2.697425 CAATTCGGCAGCGACTCG 59.303 61.111 0.00 0.00 0.00 4.18
170 171 2.401195 GCAATTCGGCAGCGACTC 59.599 61.111 0.00 0.00 0.00 3.36
171 172 3.127533 GGCAATTCGGCAGCGACT 61.128 61.111 0.00 0.00 40.76 4.18
172 173 2.690778 AAGGCAATTCGGCAGCGAC 61.691 57.895 0.00 0.00 44.47 5.19
173 174 2.359850 AAGGCAATTCGGCAGCGA 60.360 55.556 0.00 0.00 44.47 4.93
174 175 1.996786 ATCAAGGCAATTCGGCAGCG 61.997 55.000 4.72 0.00 44.47 5.18
175 176 0.248784 GATCAAGGCAATTCGGCAGC 60.249 55.000 0.00 0.00 44.47 5.25
176 177 0.028505 CGATCAAGGCAATTCGGCAG 59.971 55.000 0.00 0.00 44.47 4.85
177 178 0.392327 TCGATCAAGGCAATTCGGCA 60.392 50.000 0.00 0.00 44.47 5.69
178 179 0.028110 GTCGATCAAGGCAATTCGGC 59.972 55.000 0.00 0.00 41.61 5.54
179 180 1.656652 AGTCGATCAAGGCAATTCGG 58.343 50.000 0.00 0.00 32.67 4.30
180 181 2.030946 GGAAGTCGATCAAGGCAATTCG 59.969 50.000 0.00 0.00 0.00 3.34
181 182 2.030946 CGGAAGTCGATCAAGGCAATTC 59.969 50.000 0.00 0.00 42.43 2.17
182 183 2.009774 CGGAAGTCGATCAAGGCAATT 58.990 47.619 0.00 0.00 42.43 2.32
183 184 1.207089 TCGGAAGTCGATCAAGGCAAT 59.793 47.619 0.00 0.00 43.74 3.56
184 185 0.606096 TCGGAAGTCGATCAAGGCAA 59.394 50.000 0.00 0.00 43.74 4.52
185 186 2.272923 TCGGAAGTCGATCAAGGCA 58.727 52.632 0.00 0.00 43.74 4.75
194 195 0.914551 CGCAACAGTATCGGAAGTCG 59.085 55.000 0.00 0.00 40.90 4.18
195 196 0.645868 GCGCAACAGTATCGGAAGTC 59.354 55.000 0.30 0.00 0.00 3.01
196 197 1.076533 CGCGCAACAGTATCGGAAGT 61.077 55.000 8.75 0.00 0.00 3.01
197 198 0.800683 TCGCGCAACAGTATCGGAAG 60.801 55.000 8.75 0.00 0.00 3.46
198 199 0.179121 ATCGCGCAACAGTATCGGAA 60.179 50.000 8.75 0.00 0.00 4.30
199 200 0.664224 TATCGCGCAACAGTATCGGA 59.336 50.000 8.75 0.00 0.00 4.55
200 201 0.776451 GTATCGCGCAACAGTATCGG 59.224 55.000 8.75 0.00 0.00 4.18
201 202 1.187271 GTGTATCGCGCAACAGTATCG 59.813 52.381 8.75 0.00 0.00 2.92
202 203 2.190161 TGTGTATCGCGCAACAGTATC 58.810 47.619 8.75 3.56 34.22 2.24
203 204 2.193447 CTGTGTATCGCGCAACAGTAT 58.807 47.619 8.75 0.00 37.13 2.12
204 205 1.068125 ACTGTGTATCGCGCAACAGTA 60.068 47.619 24.43 12.73 36.77 2.74
205 206 0.319555 ACTGTGTATCGCGCAACAGT 60.320 50.000 21.89 21.89 37.13 3.55
206 207 1.320555 GTACTGTGTATCGCGCAACAG 59.679 52.381 20.92 20.92 37.13 3.16
207 208 1.336056 TGTACTGTGTATCGCGCAACA 60.336 47.619 8.75 5.06 37.13 3.33
208 209 1.320555 CTGTACTGTGTATCGCGCAAC 59.679 52.381 8.75 1.85 37.13 4.17
209 210 1.068125 ACTGTACTGTGTATCGCGCAA 60.068 47.619 8.75 0.00 37.13 4.85
210 211 0.524414 ACTGTACTGTGTATCGCGCA 59.476 50.000 8.75 0.00 36.06 6.09
211 212 0.914551 CACTGTACTGTGTATCGCGC 59.085 55.000 21.17 0.00 33.61 6.86
212 213 2.174764 GTCACTGTACTGTGTATCGCG 58.825 52.381 26.20 0.00 38.90 5.87
213 214 2.174764 CGTCACTGTACTGTGTATCGC 58.825 52.381 26.20 14.38 38.90 4.58
214 215 2.174764 GCGTCACTGTACTGTGTATCG 58.825 52.381 26.20 25.71 38.90 2.92
215 216 2.163815 AGGCGTCACTGTACTGTGTATC 59.836 50.000 26.20 18.08 38.90 2.24
216 217 2.168496 AGGCGTCACTGTACTGTGTAT 58.832 47.619 26.20 10.83 38.90 2.29
217 218 1.612676 AGGCGTCACTGTACTGTGTA 58.387 50.000 26.20 14.16 38.90 2.90
218 219 1.268899 GTAGGCGTCACTGTACTGTGT 59.731 52.381 26.20 13.39 38.90 3.72
219 220 1.540267 AGTAGGCGTCACTGTACTGTG 59.460 52.381 22.89 22.89 39.15 3.66
220 221 1.540267 CAGTAGGCGTCACTGTACTGT 59.460 52.381 10.29 0.00 38.28 3.55
221 222 2.264109 CAGTAGGCGTCACTGTACTG 57.736 55.000 10.29 5.78 38.86 2.74
227 228 0.319900 CTGCAACAGTAGGCGTCACT 60.320 55.000 0.00 0.00 0.00 3.41
228 229 0.319555 TCTGCAACAGTAGGCGTCAC 60.320 55.000 0.00 0.00 32.61 3.67
229 230 0.608130 ATCTGCAACAGTAGGCGTCA 59.392 50.000 0.00 0.00 32.61 4.35
230 231 2.159226 AGTATCTGCAACAGTAGGCGTC 60.159 50.000 0.00 0.00 32.61 5.19
231 232 1.825474 AGTATCTGCAACAGTAGGCGT 59.175 47.619 0.00 0.00 32.61 5.68
232 233 2.464865 GAGTATCTGCAACAGTAGGCG 58.535 52.381 0.00 0.00 32.61 5.52
247 248 3.118112 CCAAGATGCTCCAACCAGAGTAT 60.118 47.826 0.00 0.00 41.27 2.12
248 249 2.237143 CCAAGATGCTCCAACCAGAGTA 59.763 50.000 0.00 0.00 36.20 2.59
249 250 1.004044 CCAAGATGCTCCAACCAGAGT 59.996 52.381 0.00 0.00 36.20 3.24
250 251 1.681166 CCCAAGATGCTCCAACCAGAG 60.681 57.143 0.00 0.00 36.92 3.35
251 252 0.329261 CCCAAGATGCTCCAACCAGA 59.671 55.000 0.00 0.00 0.00 3.86
252 253 0.682209 CCCCAAGATGCTCCAACCAG 60.682 60.000 0.00 0.00 0.00 4.00
253 254 1.383799 CCCCAAGATGCTCCAACCA 59.616 57.895 0.00 0.00 0.00 3.67
254 255 0.251787 AACCCCAAGATGCTCCAACC 60.252 55.000 0.00 0.00 0.00 3.77
255 256 2.492088 GTTAACCCCAAGATGCTCCAAC 59.508 50.000 0.00 0.00 0.00 3.77
256 257 2.802719 GTTAACCCCAAGATGCTCCAA 58.197 47.619 0.00 0.00 0.00 3.53
257 258 1.339631 CGTTAACCCCAAGATGCTCCA 60.340 52.381 0.00 0.00 0.00 3.86
258 259 1.065709 TCGTTAACCCCAAGATGCTCC 60.066 52.381 0.00 0.00 0.00 4.70
259 260 2.396590 TCGTTAACCCCAAGATGCTC 57.603 50.000 0.00 0.00 0.00 4.26
260 261 2.871096 TTCGTTAACCCCAAGATGCT 57.129 45.000 0.00 0.00 0.00 3.79
261 262 4.638865 ACTTATTCGTTAACCCCAAGATGC 59.361 41.667 0.00 0.00 0.00 3.91
262 263 6.753107 AACTTATTCGTTAACCCCAAGATG 57.247 37.500 0.00 0.00 0.00 2.90
263 264 9.470399 AAATAACTTATTCGTTAACCCCAAGAT 57.530 29.630 0.00 0.00 33.50 2.40
264 265 8.866970 AAATAACTTATTCGTTAACCCCAAGA 57.133 30.769 0.00 0.00 33.50 3.02
267 268 8.955388 GGTAAAATAACTTATTCGTTAACCCCA 58.045 33.333 0.00 0.00 33.50 4.96
268 269 8.122330 CGGTAAAATAACTTATTCGTTAACCCC 58.878 37.037 0.00 0.00 33.50 4.95
269 270 8.122330 CCGGTAAAATAACTTATTCGTTAACCC 58.878 37.037 0.00 0.00 33.50 4.11
270 271 8.878769 TCCGGTAAAATAACTTATTCGTTAACC 58.121 33.333 0.00 0.00 33.50 2.85
271 272 9.906111 CTCCGGTAAAATAACTTATTCGTTAAC 57.094 33.333 0.00 0.00 33.50 2.01
272 273 9.097257 CCTCCGGTAAAATAACTTATTCGTTAA 57.903 33.333 0.00 0.00 33.50 2.01
273 274 7.224557 GCCTCCGGTAAAATAACTTATTCGTTA 59.775 37.037 0.00 0.00 34.22 3.18
315 316 1.686325 ATCTACCAACGGCGGATGCT 61.686 55.000 13.24 0.00 42.25 3.79
352 353 0.874607 CACTTATACGCACTCGGGCC 60.875 60.000 0.00 0.00 40.69 5.80
358 359 5.746307 TCGATTACTCACTTATACGCACT 57.254 39.130 0.00 0.00 0.00 4.40
371 372 1.641577 AGTTGCCGCTTCGATTACTC 58.358 50.000 0.00 0.00 0.00 2.59
402 403 7.497595 ACTTGTCAGTCTGAACAGTTGTATTA 58.502 34.615 3.51 0.00 0.00 0.98
414 415 5.592104 TTCTGTACAACTTGTCAGTCTGA 57.408 39.130 0.00 0.00 31.83 3.27
458 459 7.360691 CGAGAGCATGATTAAATATCAACCAGG 60.361 40.741 0.00 0.00 0.00 4.45
490 491 1.743958 AGACGAGACGGAATTGTCGAT 59.256 47.619 5.01 0.00 43.70 3.59
493 494 2.260481 GGAAGACGAGACGGAATTGTC 58.740 52.381 0.00 0.00 39.21 3.18
498 499 0.964358 GGAGGGAAGACGAGACGGAA 60.964 60.000 0.00 0.00 0.00 4.30
513 514 4.600983 AGAAAGAGAATATGGATGGGGAGG 59.399 45.833 0.00 0.00 0.00 4.30
533 534 0.320374 AACAATGGCGACGGAGAGAA 59.680 50.000 0.00 0.00 0.00 2.87
584 585 7.178097 TCCACTCTACTCATGGATTCATATCAG 59.822 40.741 0.00 0.00 37.60 2.90
606 607 2.166664 ACAAGATCTACTCCGCTTCCAC 59.833 50.000 0.00 0.00 0.00 4.02
703 758 1.825191 CCCGCCTCCAATCACATGG 60.825 63.158 0.00 0.00 42.12 3.66
719 774 5.449177 GCATGCAGTAGTTACTTTGATTCCC 60.449 44.000 14.21 0.00 33.46 3.97
727 782 3.813166 ACAAACGCATGCAGTAGTTACTT 59.187 39.130 19.57 4.17 33.46 2.24
779 851 2.997485 ATTTGCTTCTTTCAGCCGAC 57.003 45.000 0.00 0.00 39.25 4.79
782 854 4.218417 TGACCTTATTTGCTTCTTTCAGCC 59.782 41.667 0.00 0.00 39.25 4.85
850 926 7.201911 GGGGATTTATTTGGATCGAAACAGAAT 60.202 37.037 4.92 6.22 0.00 2.40
859 935 3.490348 AGCAGGGGATTTATTTGGATCG 58.510 45.455 0.00 0.00 0.00 3.69
918 994 6.617879 ACCAAATAAGGAACAGAAATTACGC 58.382 36.000 0.00 0.00 0.00 4.42
932 1008 6.642707 TTCCACAGTTGTAACCAAATAAGG 57.357 37.500 0.00 0.00 30.94 2.69
1020 1096 1.164411 CCATAAAACTGCCTCGCACA 58.836 50.000 0.00 0.00 33.79 4.57
1558 1648 9.877178 CAAAGTTTAGTCTTACTCCATGTATCT 57.123 33.333 0.00 0.00 0.00 1.98
1625 1725 7.721286 ACAAAACAAACAAACATGTTGAGAA 57.279 28.000 12.82 0.00 39.57 2.87
1627 1727 8.012151 TGTACAAAACAAACAAACATGTTGAG 57.988 30.769 12.82 10.63 39.57 3.02
1629 1729 8.012151 TCTGTACAAAACAAACAAACATGTTG 57.988 30.769 12.82 8.99 39.57 3.33
1649 1749 1.431633 TCCAACTGGTCCTCCTCTGTA 59.568 52.381 0.00 0.00 36.34 2.74
1662 1762 0.947244 GTGTTCCACAGCTCCAACTG 59.053 55.000 0.00 0.00 43.59 3.16
1877 1977 9.516314 GTTTGTGAAAAATTTACTTACTGCTCT 57.484 29.630 0.00 0.00 0.00 4.09
1897 1997 7.857734 TGATATTACTACATGGTGGTTTGTG 57.142 36.000 0.00 0.00 0.00 3.33
1930 2030 9.066892 ACTAAGACATTGTACATTGATGTGTTT 57.933 29.630 20.28 14.24 41.89 2.83
1963 2071 7.482654 TCGTGGAATAAGATTCAATGTCATC 57.517 36.000 1.90 0.00 0.00 2.92
1986 2094 5.882557 TGTCTGAAGCCCTGAAAAGATAATC 59.117 40.000 0.00 0.00 0.00 1.75
1996 2104 3.840666 AGTATTCTTGTCTGAAGCCCTGA 59.159 43.478 0.00 0.00 0.00 3.86
2082 2190 6.041069 TCCCGAAAAACTTTGACATACCATTT 59.959 34.615 0.00 0.00 0.00 2.32
2117 2225 1.479323 CAAGATTCCACAAGGGCATGG 59.521 52.381 0.00 0.00 37.32 3.66
2258 2367 7.831691 TGGAACTTTCTTTGTTGATCCATAA 57.168 32.000 0.00 0.00 0.00 1.90
2348 2457 5.010820 ACGGAAGTTCTCTAGTGTTTTAGCT 59.989 40.000 2.25 0.00 46.40 3.32
2360 2469 5.536538 TGCTATCATATCACGGAAGTTCTCT 59.463 40.000 2.25 0.00 46.40 3.10
2492 2601 3.728718 CGTGGTGTCAAAAGTTATTGCAC 59.271 43.478 0.00 0.00 36.98 4.57
2511 2620 6.474819 TTGTAGATGTTTGTTCCATACGTG 57.525 37.500 0.00 0.00 0.00 4.49
2598 2707 8.372877 TCTCTTCCTTCTCATTAGTCAAGAAT 57.627 34.615 0.00 0.00 0.00 2.40
2667 2776 7.333672 CCTGTAAGAATAGTAACTGGTGGTTTC 59.666 40.741 0.00 0.00 36.14 2.78
2707 2816 0.025001 CAAGCGATAACCGTCTTGCG 59.975 55.000 0.00 0.00 41.53 4.85
2716 2825 5.718649 TGATGTAAAGAGCAAGCGATAAC 57.281 39.130 0.00 0.00 0.00 1.89
2721 2830 4.346734 AACATGATGTAAAGAGCAAGCG 57.653 40.909 0.00 0.00 0.00 4.68
2832 3003 5.163581 CCCTAGCCTGATCTGAACAAAATTG 60.164 44.000 0.38 0.00 0.00 2.32
2838 3010 0.833287 GCCCTAGCCTGATCTGAACA 59.167 55.000 0.38 0.00 0.00 3.18
2839 3011 3.696306 GCCCTAGCCTGATCTGAAC 57.304 57.895 0.38 0.00 0.00 3.18
2855 3027 0.896923 TGACTGCATTTCCAATGGCC 59.103 50.000 0.00 0.00 0.00 5.36
2877 3049 2.086869 TGTTGCATTAGGAAGCTCTGC 58.913 47.619 0.00 0.00 0.00 4.26
2878 3050 3.076621 TGTGTTGCATTAGGAAGCTCTG 58.923 45.455 0.00 0.00 0.00 3.35
2895 3067 2.428171 GCCATTTGCACCATCTATGTGT 59.572 45.455 0.00 0.00 40.77 3.72
2896 3068 3.088194 GCCATTTGCACCATCTATGTG 57.912 47.619 0.00 0.00 40.77 3.21
2950 3122 8.930760 CAAAGGTTTTGTGATTTCTGTAAACAA 58.069 29.630 0.00 0.00 0.00 2.83
2960 3132 5.916318 TCATCAGCAAAGGTTTTGTGATTT 58.084 33.333 12.56 0.00 0.00 2.17
2963 3135 5.534207 AATCATCAGCAAAGGTTTTGTGA 57.466 34.783 3.77 6.41 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.