Multiple sequence alignment - TraesCS3A01G126200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G126200 chr3A 100.000 3537 0 0 1 3537 101893434 101889898 0.000000e+00 6532.0
1 TraesCS3A01G126200 chr3A 78.321 655 99 20 1923 2546 102275424 102276066 1.990000e-102 383.0
2 TraesCS3A01G126200 chr3A 77.163 705 123 22 1735 2414 102523893 102524584 3.330000e-100 375.0
3 TraesCS3A01G126200 chr3A 76.728 709 119 27 1735 2414 102473056 102473747 1.560000e-93 353.0
4 TraesCS3A01G126200 chr3A 78.378 481 82 11 1785 2251 101870542 101870070 3.450000e-75 292.0
5 TraesCS3A01G126200 chr3A 74.780 682 116 40 2568 3215 102474310 102474969 4.530000e-64 255.0
6 TraesCS3A01G126200 chr3A 74.633 682 117 40 2568 3215 102525148 102525807 2.110000e-62 250.0
7 TraesCS3A01G126200 chr3A 75.292 514 81 32 2660 3136 102276347 102276851 1.660000e-48 204.0
8 TraesCS3A01G126200 chr3A 82.418 91 15 1 1167 1257 102274883 102274972 1.050000e-10 78.7
9 TraesCS3A01G126200 chr3B 90.730 1068 65 13 2269 3328 133816579 133815538 0.000000e+00 1393.0
10 TraesCS3A01G126200 chr3B 85.337 1023 67 42 646 1645 133818409 133817447 0.000000e+00 981.0
11 TraesCS3A01G126200 chr3B 88.520 662 46 14 1642 2275 133817395 133816736 0.000000e+00 774.0
12 TraesCS3A01G126200 chr3B 77.778 819 146 23 1735 2527 135708837 135709645 4.130000e-129 472.0
13 TraesCS3A01G126200 chr3B 78.249 754 133 22 1792 2535 135002016 135001284 4.160000e-124 455.0
14 TraesCS3A01G126200 chr3B 78.187 761 131 25 1775 2525 134967670 134968405 1.500000e-123 453.0
15 TraesCS3A01G126200 chr3B 97.166 247 6 1 397 642 497096329 497096575 1.960000e-112 416.0
16 TraesCS3A01G126200 chr3B 97.107 242 7 0 400 641 742450160 742449919 3.290000e-110 409.0
17 TraesCS3A01G126200 chr3B 76.399 822 142 28 1756 2542 131054754 131055558 2.560000e-106 396.0
18 TraesCS3A01G126200 chr3B 90.659 182 13 3 2 181 133818715 133818536 4.560000e-59 239.0
19 TraesCS3A01G126200 chr3B 85.217 230 30 3 2320 2547 135680504 135680731 2.120000e-57 233.0
20 TraesCS3A01G126200 chr3B 88.889 180 18 1 3360 3537 133815540 133815361 1.650000e-53 220.0
21 TraesCS3A01G126200 chr3B 82.418 91 15 1 1167 1257 134966959 134967048 1.050000e-10 78.7
22 TraesCS3A01G126200 chr3B 81.000 100 18 1 1167 1266 135002740 135002642 1.050000e-10 78.7
23 TraesCS3A01G126200 chr3D 84.050 1442 145 55 1146 2538 85237477 85238882 0.000000e+00 1310.0
24 TraesCS3A01G126200 chr3D 87.450 757 76 15 2525 3265 85245851 85246604 0.000000e+00 854.0
25 TraesCS3A01G126200 chr3D 98.485 462 7 0 3076 3537 84909193 84908732 0.000000e+00 815.0
26 TraesCS3A01G126200 chr3D 92.045 440 21 5 724 1154 84909626 84909192 1.090000e-169 606.0
27 TraesCS3A01G126200 chr3D 78.554 816 138 25 1735 2527 85587268 85588069 1.470000e-138 503.0
28 TraesCS3A01G126200 chr3D 78.416 783 129 23 1792 2546 85399570 85400340 1.150000e-129 473.0
29 TraesCS3A01G126200 chr3D 77.143 840 152 24 1735 2547 85443174 85444000 5.380000e-123 451.0
30 TraesCS3A01G126200 chr3D 94.828 290 12 2 115 402 84909980 84909692 1.940000e-122 449.0
31 TraesCS3A01G126200 chr3D 80.180 555 86 14 1735 2280 85411000 85410461 9.200000e-106 394.0
32 TraesCS3A01G126200 chr3D 80.204 490 72 15 1777 2251 84900595 84900116 9.400000e-91 344.0
33 TraesCS3A01G126200 chr3D 82.418 91 15 1 1167 1257 85398826 85398915 1.050000e-10 78.7
34 TraesCS3A01G126200 chr3D 91.837 49 4 0 646 694 84909684 84909636 6.340000e-08 69.4
35 TraesCS3A01G126200 chr3D 97.222 36 0 1 97 131 84910487 84910452 3.810000e-05 60.2
36 TraesCS3A01G126200 chr7A 97.095 241 7 0 401 641 699150275 699150515 1.180000e-109 407.0
37 TraesCS3A01G126200 chr7A 96.356 247 8 1 398 643 563349204 563348958 4.250000e-109 405.0
38 TraesCS3A01G126200 chr7A 96.708 243 7 1 399 641 534783842 534784083 1.530000e-108 403.0
39 TraesCS3A01G126200 chr6A 97.095 241 7 0 401 641 408339081 408339321 1.180000e-109 407.0
40 TraesCS3A01G126200 chr2A 96.356 247 9 0 397 643 84977773 84977527 1.180000e-109 407.0
41 TraesCS3A01G126200 chr2A 96.708 243 8 0 399 641 350732127 350731885 4.250000e-109 405.0
42 TraesCS3A01G126200 chrUn 80.474 548 82 15 1742 2280 297431174 297431705 2.560000e-106 396.0
43 TraesCS3A01G126200 chrUn 80.474 548 82 15 1742 2280 297436126 297436657 2.560000e-106 396.0
44 TraesCS3A01G126200 chr4B 95.219 251 11 1 391 641 72900039 72900288 2.560000e-106 396.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G126200 chr3A 101889898 101893434 3536 True 6532.00 6532 100.0000 1 3537 1 chr3A.!!$R2 3536
1 TraesCS3A01G126200 chr3A 102523893 102525807 1914 False 312.50 375 75.8980 1735 3215 2 chr3A.!!$F3 1480
2 TraesCS3A01G126200 chr3A 102473056 102474969 1913 False 304.00 353 75.7540 1735 3215 2 chr3A.!!$F2 1480
3 TraesCS3A01G126200 chr3A 102274883 102276851 1968 False 221.90 383 78.6770 1167 3136 3 chr3A.!!$F1 1969
4 TraesCS3A01G126200 chr3B 133815361 133818715 3354 True 721.40 1393 88.8270 2 3537 5 chr3B.!!$R2 3535
5 TraesCS3A01G126200 chr3B 135708837 135709645 808 False 472.00 472 77.7780 1735 2527 1 chr3B.!!$F3 792
6 TraesCS3A01G126200 chr3B 131054754 131055558 804 False 396.00 396 76.3990 1756 2542 1 chr3B.!!$F1 786
7 TraesCS3A01G126200 chr3B 135001284 135002740 1456 True 266.85 455 79.6245 1167 2535 2 chr3B.!!$R3 1368
8 TraesCS3A01G126200 chr3B 134966959 134968405 1446 False 265.85 453 80.3025 1167 2525 2 chr3B.!!$F5 1358
9 TraesCS3A01G126200 chr3D 85237477 85238882 1405 False 1310.00 1310 84.0500 1146 2538 1 chr3D.!!$F1 1392
10 TraesCS3A01G126200 chr3D 85245851 85246604 753 False 854.00 854 87.4500 2525 3265 1 chr3D.!!$F2 740
11 TraesCS3A01G126200 chr3D 85587268 85588069 801 False 503.00 503 78.5540 1735 2527 1 chr3D.!!$F4 792
12 TraesCS3A01G126200 chr3D 85443174 85444000 826 False 451.00 451 77.1430 1735 2547 1 chr3D.!!$F3 812
13 TraesCS3A01G126200 chr3D 84908732 84910487 1755 True 399.92 815 94.8834 97 3537 5 chr3D.!!$R3 3440
14 TraesCS3A01G126200 chr3D 85410461 85411000 539 True 394.00 394 80.1800 1735 2280 1 chr3D.!!$R2 545
15 TraesCS3A01G126200 chr3D 85398826 85400340 1514 False 275.85 473 80.4170 1167 2546 2 chr3D.!!$F5 1379
16 TraesCS3A01G126200 chrUn 297431174 297431705 531 False 396.00 396 80.4740 1742 2280 1 chrUn.!!$F1 538
17 TraesCS3A01G126200 chrUn 297436126 297436657 531 False 396.00 396 80.4740 1742 2280 1 chrUn.!!$F2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 724 0.034476 CAGCAAGTCTGAGCTCCACA 59.966 55.0 12.15 0.00 45.72 4.17 F
267 758 0.035439 GGCCTAGCTTGCACAAGGTA 60.035 55.0 18.34 18.34 46.10 3.08 F
492 984 0.037303 AGACCAACTACGACGGGAGA 59.963 55.0 0.00 0.00 0.00 3.71 F
1470 2198 0.042188 CTCGCAACAGTTTGTGACCG 60.042 55.0 0.00 0.00 45.35 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1770 0.178990 GGGTGAGGAAAAGGCACAGT 60.179 55.0 0.0 0.0 34.33 3.55 R
1434 2162 0.643820 GAGTAAAACATCCGACCGCG 59.356 55.0 0.0 0.0 37.24 6.46 R
1710 2493 0.667993 CAGTGAAATGGGCAACACGT 59.332 50.0 0.0 0.0 38.15 4.49 R
2963 4479 0.796312 CTCGCCACGTAGCAAACAAT 59.204 50.0 6.8 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.106555 TGTGTAAAAATCTAGCTTGCTCTGC 60.107 40.000 0.00 0.00 0.00 4.26
42 43 0.984230 TCTGCCTGAGTGTAAAGGGG 59.016 55.000 0.00 0.00 33.87 4.79
93 94 2.629656 GCGTGTCCTGGCTGCATTT 61.630 57.895 0.50 0.00 0.00 2.32
97 98 0.469705 TGTCCTGGCTGCATTTTGGT 60.470 50.000 0.50 0.00 0.00 3.67
98 99 0.037975 GTCCTGGCTGCATTTTGGTG 60.038 55.000 0.50 0.00 0.00 4.17
192 683 5.940470 AGAGTACACAATCAGGAAATCCAAC 59.060 40.000 1.67 0.00 38.89 3.77
204 695 4.003648 GGAAATCCAACAGGTCTACAGTG 58.996 47.826 0.00 0.00 35.64 3.66
205 696 4.262894 GGAAATCCAACAGGTCTACAGTGA 60.263 45.833 0.00 0.00 35.64 3.41
233 724 0.034476 CAGCAAGTCTGAGCTCCACA 59.966 55.000 12.15 0.00 45.72 4.17
267 758 0.035439 GGCCTAGCTTGCACAAGGTA 60.035 55.000 18.34 18.34 46.10 3.08
270 761 3.551259 TAGCTTGCACAAGGTAGGC 57.449 52.632 16.17 1.42 46.10 3.93
271 762 0.690192 TAGCTTGCACAAGGTAGGCA 59.310 50.000 16.17 0.00 46.10 4.75
274 765 0.877071 CTTGCACAAGGTAGGCACAG 59.123 55.000 2.32 0.00 37.26 3.66
365 857 1.780309 TGGTCCCTTCATTCAACACCT 59.220 47.619 0.00 0.00 0.00 4.00
397 889 2.569134 GCTCGAGGAGTTCAGCGT 59.431 61.111 15.58 0.00 31.39 5.07
402 894 2.005451 TCGAGGAGTTCAGCGTAGTAC 58.995 52.381 0.00 0.00 0.00 2.73
403 895 2.008329 CGAGGAGTTCAGCGTAGTACT 58.992 52.381 0.00 0.00 0.00 2.73
404 896 2.030701 CGAGGAGTTCAGCGTAGTACTC 59.969 54.545 0.00 7.23 37.01 2.59
408 900 2.355444 GAGTTCAGCGTAGTACTCCCTC 59.645 54.545 0.00 0.00 32.74 4.30
409 901 1.404748 GTTCAGCGTAGTACTCCCTCC 59.595 57.143 0.00 0.00 0.00 4.30
410 902 0.622136 TCAGCGTAGTACTCCCTCCA 59.378 55.000 0.00 0.00 0.00 3.86
411 903 1.214673 TCAGCGTAGTACTCCCTCCAT 59.785 52.381 0.00 0.00 0.00 3.41
412 904 2.032620 CAGCGTAGTACTCCCTCCATT 58.967 52.381 0.00 0.00 0.00 3.16
413 905 2.034812 CAGCGTAGTACTCCCTCCATTC 59.965 54.545 0.00 0.00 0.00 2.67
414 906 1.340568 GCGTAGTACTCCCTCCATTCC 59.659 57.143 0.00 0.00 0.00 3.01
415 907 2.662866 CGTAGTACTCCCTCCATTCCA 58.337 52.381 0.00 0.00 0.00 3.53
416 908 3.028850 CGTAGTACTCCCTCCATTCCAA 58.971 50.000 0.00 0.00 0.00 3.53
417 909 3.449737 CGTAGTACTCCCTCCATTCCAAA 59.550 47.826 0.00 0.00 0.00 3.28
418 910 4.081309 CGTAGTACTCCCTCCATTCCAAAA 60.081 45.833 0.00 0.00 0.00 2.44
419 911 5.396436 CGTAGTACTCCCTCCATTCCAAAAT 60.396 44.000 0.00 0.00 0.00 1.82
420 912 6.183360 CGTAGTACTCCCTCCATTCCAAAATA 60.183 42.308 0.00 0.00 0.00 1.40
421 913 6.848562 AGTACTCCCTCCATTCCAAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
422 914 7.947782 AGTACTCCCTCCATTCCAAAATATA 57.052 36.000 0.00 0.00 0.00 0.86
423 915 7.978925 AGTACTCCCTCCATTCCAAAATATAG 58.021 38.462 0.00 0.00 0.00 1.31
424 916 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
425 917 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
426 918 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
427 919 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
428 920 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
429 921 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
430 922 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
431 923 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
432 924 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
433 925 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
453 945 2.987046 GCTTCACGAGGTTCAACTTTG 58.013 47.619 0.00 0.00 0.00 2.77
454 946 2.612212 GCTTCACGAGGTTCAACTTTGA 59.388 45.455 0.00 0.00 34.92 2.69
455 947 3.546218 GCTTCACGAGGTTCAACTTTGAC 60.546 47.826 0.00 0.00 36.83 3.18
456 948 2.557317 TCACGAGGTTCAACTTTGACC 58.443 47.619 0.00 0.00 36.83 4.02
457 949 2.093394 TCACGAGGTTCAACTTTGACCA 60.093 45.455 0.00 0.00 36.83 4.02
458 950 2.878406 CACGAGGTTCAACTTTGACCAT 59.122 45.455 0.00 0.00 36.83 3.55
459 951 4.062293 CACGAGGTTCAACTTTGACCATA 58.938 43.478 0.00 0.00 36.83 2.74
460 952 4.513692 CACGAGGTTCAACTTTGACCATAA 59.486 41.667 0.00 0.00 36.83 1.90
461 953 5.008217 CACGAGGTTCAACTTTGACCATAAA 59.992 40.000 0.00 0.00 36.83 1.40
462 954 5.768164 ACGAGGTTCAACTTTGACCATAAAT 59.232 36.000 0.00 0.00 36.83 1.40
463 955 6.264518 ACGAGGTTCAACTTTGACCATAAATT 59.735 34.615 0.00 0.00 36.83 1.82
464 956 7.145323 CGAGGTTCAACTTTGACCATAAATTT 58.855 34.615 0.00 0.00 36.83 1.82
465 957 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
466 958 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
467 959 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
468 960 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
469 961 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
471 963 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
472 964 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
473 965 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
474 966 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
475 967 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
476 968 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
477 969 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
478 970 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
479 971 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
480 972 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
481 973 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
482 974 8.723311 CATAAATTTAACCAACGAGACCAACTA 58.277 33.333 1.21 0.00 0.00 2.24
483 975 6.549912 AATTTAACCAACGAGACCAACTAC 57.450 37.500 0.00 0.00 0.00 2.73
484 976 2.144482 AACCAACGAGACCAACTACG 57.856 50.000 0.00 0.00 0.00 3.51
485 977 1.321474 ACCAACGAGACCAACTACGA 58.679 50.000 0.00 0.00 0.00 3.43
486 978 1.000938 ACCAACGAGACCAACTACGAC 60.001 52.381 0.00 0.00 0.00 4.34
487 979 1.324718 CAACGAGACCAACTACGACG 58.675 55.000 0.00 0.00 0.00 5.12
488 980 0.239347 AACGAGACCAACTACGACGG 59.761 55.000 0.00 0.00 0.00 4.79
489 981 1.136147 CGAGACCAACTACGACGGG 59.864 63.158 0.00 0.00 0.00 5.28
490 982 1.300971 CGAGACCAACTACGACGGGA 61.301 60.000 0.00 0.00 0.00 5.14
491 983 0.450983 GAGACCAACTACGACGGGAG 59.549 60.000 0.00 0.00 0.00 4.30
492 984 0.037303 AGACCAACTACGACGGGAGA 59.963 55.000 0.00 0.00 0.00 3.71
493 985 0.883833 GACCAACTACGACGGGAGAA 59.116 55.000 0.00 0.00 0.00 2.87
494 986 1.270550 GACCAACTACGACGGGAGAAA 59.729 52.381 0.00 0.00 0.00 2.52
495 987 1.688197 ACCAACTACGACGGGAGAAAA 59.312 47.619 0.00 0.00 0.00 2.29
496 988 2.102925 ACCAACTACGACGGGAGAAAAA 59.897 45.455 0.00 0.00 0.00 1.94
551 1043 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
552 1044 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
553 1045 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
554 1046 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
555 1047 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
556 1048 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
557 1049 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
558 1050 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
559 1051 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
560 1052 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
561 1053 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
562 1054 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
578 1070 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
579 1071 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
580 1072 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
581 1073 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
582 1074 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
583 1075 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
584 1076 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
585 1077 9.590451 AATCGGTCTTGATAGTTAAATTTACGA 57.410 29.630 0.00 0.00 0.00 3.43
586 1078 9.760077 ATCGGTCTTGATAGTTAAATTTACGAT 57.240 29.630 0.00 2.31 0.00 3.73
587 1079 9.241317 TCGGTCTTGATAGTTAAATTTACGATC 57.759 33.333 0.00 5.87 0.00 3.69
588 1080 9.027129 CGGTCTTGATAGTTAAATTTACGATCA 57.973 33.333 13.89 13.89 36.35 2.92
598 1090 9.394477 AGTTAAATTTACGATCAAAGTTGAAGC 57.606 29.630 0.00 0.00 41.13 3.86
599 1091 9.176181 GTTAAATTTACGATCAAAGTTGAAGCA 57.824 29.630 0.00 0.00 41.13 3.91
600 1092 7.623268 AAATTTACGATCAAAGTTGAAGCAC 57.377 32.000 0.00 0.00 41.13 4.40
601 1093 2.949714 ACGATCAAAGTTGAAGCACG 57.050 45.000 0.00 5.15 41.13 5.34
602 1094 2.210116 ACGATCAAAGTTGAAGCACGT 58.790 42.857 0.00 5.70 41.13 4.49
603 1095 2.032894 ACGATCAAAGTTGAAGCACGTG 60.033 45.455 12.28 12.28 41.13 4.49
604 1096 2.662791 CGATCAAAGTTGAAGCACGTGG 60.663 50.000 18.88 0.00 41.13 4.94
605 1097 2.031258 TCAAAGTTGAAGCACGTGGA 57.969 45.000 18.88 0.00 33.55 4.02
606 1098 2.571212 TCAAAGTTGAAGCACGTGGAT 58.429 42.857 18.88 0.00 33.55 3.41
607 1099 3.734463 TCAAAGTTGAAGCACGTGGATA 58.266 40.909 18.88 0.00 33.55 2.59
608 1100 3.745975 TCAAAGTTGAAGCACGTGGATAG 59.254 43.478 18.88 0.00 33.55 2.08
609 1101 3.678056 AAGTTGAAGCACGTGGATAGA 57.322 42.857 18.88 0.00 0.00 1.98
610 1102 3.238108 AGTTGAAGCACGTGGATAGAG 57.762 47.619 18.88 0.00 0.00 2.43
611 1103 2.093973 AGTTGAAGCACGTGGATAGAGG 60.094 50.000 18.88 0.00 0.00 3.69
612 1104 1.847328 TGAAGCACGTGGATAGAGGA 58.153 50.000 18.88 0.00 0.00 3.71
613 1105 2.176045 TGAAGCACGTGGATAGAGGAA 58.824 47.619 18.88 0.00 0.00 3.36
614 1106 2.166459 TGAAGCACGTGGATAGAGGAAG 59.834 50.000 18.88 0.00 0.00 3.46
615 1107 0.461961 AGCACGTGGATAGAGGAAGC 59.538 55.000 18.88 0.00 0.00 3.86
616 1108 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.000 18.88 0.00 0.00 3.91
617 1109 1.927895 CACGTGGATAGAGGAAGCAC 58.072 55.000 7.95 0.00 0.00 4.40
618 1110 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
619 1111 2.688446 CACGTGGATAGAGGAAGCACTA 59.312 50.000 7.95 0.00 0.00 2.74
620 1112 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
621 1113 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
622 1114 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
623 1115 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
624 1116 5.053145 GTGGATAGAGGAAGCACTACATTG 58.947 45.833 0.00 0.00 0.00 2.82
625 1117 4.716784 TGGATAGAGGAAGCACTACATTGT 59.283 41.667 0.00 0.00 0.00 2.71
626 1118 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
627 1119 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
628 1120 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
629 1121 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
630 1122 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
631 1123 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
632 1124 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
633 1125 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
637 1129 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
638 1130 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
639 1131 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
640 1132 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
641 1133 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
642 1134 2.642171 TGTGGAATGGAGGGAGTACT 57.358 50.000 0.00 0.00 0.00 2.73
643 1135 2.915869 TGTGGAATGGAGGGAGTACTT 58.084 47.619 0.00 0.00 0.00 2.24
644 1136 2.571653 TGTGGAATGGAGGGAGTACTTG 59.428 50.000 0.00 0.00 0.00 3.16
650 1142 0.323957 GGAGGGAGTACTTGCGGTTT 59.676 55.000 0.00 0.00 0.00 3.27
698 1190 2.359850 GCCTGACGATTGGTGCCA 60.360 61.111 0.00 0.00 0.00 4.92
710 1202 3.403936 GGTGCCATACATCCACCTC 57.596 57.895 1.99 0.00 44.32 3.85
829 1321 4.100084 CCGAGCCCATCCACTGCA 62.100 66.667 0.00 0.00 0.00 4.41
831 1323 2.673523 GAGCCCATCCACTGCACT 59.326 61.111 0.00 0.00 0.00 4.40
832 1324 1.451028 GAGCCCATCCACTGCACTC 60.451 63.158 0.00 0.00 0.00 3.51
833 1325 2.821366 GCCCATCCACTGCACTCG 60.821 66.667 0.00 0.00 0.00 4.18
834 1326 2.821366 CCCATCCACTGCACTCGC 60.821 66.667 0.00 0.00 39.24 5.03
835 1327 3.190849 CCATCCACTGCACTCGCG 61.191 66.667 0.00 0.00 42.97 5.87
836 1328 2.125952 CATCCACTGCACTCGCGA 60.126 61.111 9.26 9.26 42.97 5.87
837 1329 2.163390 CATCCACTGCACTCGCGAG 61.163 63.158 33.45 33.45 42.97 5.03
1256 1769 0.326713 AGGTAGCCCCTTCCTCTTCC 60.327 60.000 0.00 0.00 42.73 3.46
1257 1770 0.620700 GGTAGCCCCTTCCTCTTCCA 60.621 60.000 0.00 0.00 0.00 3.53
1276 1805 0.178990 ACTGTGCCTTTTCCTCACCC 60.179 55.000 0.00 0.00 0.00 4.61
1281 1813 1.304464 CCTTTTCCTCACCCCTGCC 60.304 63.158 0.00 0.00 0.00 4.85
1287 1819 0.909610 TCCTCACCCCTGCCTAGTTG 60.910 60.000 0.00 0.00 0.00 3.16
1289 1830 2.436646 CACCCCTGCCTAGTTGCG 60.437 66.667 0.00 0.00 0.00 4.85
1293 1834 2.046892 CCTGCCTAGTTGCGTGCT 60.047 61.111 0.00 0.00 0.00 4.40
1298 1839 2.317609 CCTAGTTGCGTGCTTGCGT 61.318 57.895 0.00 0.00 37.81 5.24
1333 1874 1.197721 CCGAGATTGTTGTTCAGGCAC 59.802 52.381 0.00 0.00 0.00 5.01
1381 1999 3.724751 CGCTCAGTTATCTTGCGTAGTAC 59.275 47.826 8.82 0.00 38.39 2.73
1391 2010 5.208624 TCTTGCGTAGTACTGTAGTTACG 57.791 43.478 19.44 19.44 37.63 3.18
1418 2133 0.875059 CCGCCTTCCAGAACAGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
1434 2162 7.824779 AGAACAGTTTCCTTCATATTCTGTACC 59.175 37.037 0.00 0.00 34.84 3.34
1437 2165 3.364889 TCCTTCATATTCTGTACCGCG 57.635 47.619 0.00 0.00 0.00 6.46
1465 2193 4.688511 TGTTTTACTCGCAACAGTTTGT 57.311 36.364 0.00 0.00 34.90 2.83
1466 2194 4.407818 TGTTTTACTCGCAACAGTTTGTG 58.592 39.130 0.00 0.00 43.50 3.33
1468 2196 3.936902 TTACTCGCAACAGTTTGTGAC 57.063 42.857 0.00 0.00 45.35 3.67
1469 2197 1.014352 ACTCGCAACAGTTTGTGACC 58.986 50.000 0.00 0.00 45.35 4.02
1470 2198 0.042188 CTCGCAACAGTTTGTGACCG 60.042 55.000 0.00 0.00 45.35 4.79
1471 2199 0.741574 TCGCAACAGTTTGTGACCGT 60.742 50.000 0.00 0.00 45.35 4.83
1476 2204 2.467566 ACAGTTTGTGACCGTATCCC 57.532 50.000 0.00 0.00 0.00 3.85
1479 2207 3.000727 CAGTTTGTGACCGTATCCCTTC 58.999 50.000 0.00 0.00 0.00 3.46
1488 2216 1.202463 CCGTATCCCTTCAGCTCTGTG 60.202 57.143 0.00 0.00 0.00 3.66
1516 2244 2.363788 TGTTTCGCTAGCATCGACTT 57.636 45.000 16.45 0.00 35.51 3.01
1517 2245 2.259618 TGTTTCGCTAGCATCGACTTC 58.740 47.619 16.45 0.00 35.51 3.01
1547 2275 5.942236 ACAGACACATATGCAGATTCAGTTT 59.058 36.000 1.58 0.00 0.00 2.66
1549 2277 7.279536 ACAGACACATATGCAGATTCAGTTTAG 59.720 37.037 1.58 0.00 0.00 1.85
1550 2278 7.493645 CAGACACATATGCAGATTCAGTTTAGA 59.506 37.037 1.58 0.00 0.00 2.10
1552 2280 8.151141 ACACATATGCAGATTCAGTTTAGATG 57.849 34.615 1.58 0.00 0.00 2.90
1556 2284 9.827411 CATATGCAGATTCAGTTTAGATGAATG 57.173 33.333 5.94 0.00 45.15 2.67
1557 2285 7.876936 ATGCAGATTCAGTTTAGATGAATGT 57.123 32.000 5.94 0.00 45.15 2.71
1575 2303 4.875544 ATGTGTGACGGTATAAATGTGC 57.124 40.909 0.00 0.00 0.00 4.57
1604 2332 4.920999 TGGATGAAACCATCTGATTGTCA 58.079 39.130 0.00 0.00 40.15 3.58
1606 2334 5.416639 TGGATGAAACCATCTGATTGTCAAG 59.583 40.000 0.00 0.00 40.15 3.02
1609 2337 7.201679 GGATGAAACCATCTGATTGTCAAGTAG 60.202 40.741 0.00 0.00 40.15 2.57
1610 2338 6.533730 TGAAACCATCTGATTGTCAAGTAGT 58.466 36.000 0.00 0.00 0.00 2.73
1611 2339 7.676004 TGAAACCATCTGATTGTCAAGTAGTA 58.324 34.615 0.00 0.00 0.00 1.82
1612 2340 7.602644 TGAAACCATCTGATTGTCAAGTAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
1613 2341 6.605471 ACCATCTGATTGTCAAGTAGTACA 57.395 37.500 2.52 0.00 0.00 2.90
1616 2344 8.417106 ACCATCTGATTGTCAAGTAGTACATAG 58.583 37.037 2.52 0.00 0.00 2.23
1695 2478 2.290260 TGGGTGACTGTCCAGCAATTAG 60.290 50.000 5.17 0.00 36.35 1.73
1708 2491 4.880120 CCAGCAATTAGTGTGTCAGATCAT 59.120 41.667 0.00 0.00 0.00 2.45
1710 2493 6.539826 CCAGCAATTAGTGTGTCAGATCATTA 59.460 38.462 0.00 0.00 0.00 1.90
1712 2495 6.256539 AGCAATTAGTGTGTCAGATCATTACG 59.743 38.462 0.00 0.00 0.00 3.18
1714 2497 7.394099 CAATTAGTGTGTCAGATCATTACGTG 58.606 38.462 0.00 0.00 0.00 4.49
1772 2593 3.437049 GCGAGTTTGTCTATTGGCTTCTT 59.563 43.478 0.00 0.00 0.00 2.52
1773 2594 4.436183 GCGAGTTTGTCTATTGGCTTCTTC 60.436 45.833 0.00 0.00 0.00 2.87
1793 2615 8.484641 TTCTTCAATGTGATCATGTCTACTTC 57.515 34.615 0.00 0.00 34.19 3.01
1796 2618 6.939622 TCAATGTGATCATGTCTACTTCTGT 58.060 36.000 0.00 0.00 34.19 3.41
1843 2665 0.037734 AAGGAAATGGTGACCGGTCC 59.962 55.000 31.19 21.32 0.00 4.46
1888 2710 5.507985 CGATGGACTCTCTGTGTTGCATATA 60.508 44.000 0.00 0.00 0.00 0.86
1991 2819 5.079689 AGCAGCTCTAGGTCTTTTTCTAC 57.920 43.478 0.00 0.00 0.00 2.59
2049 2882 4.869215 TGCCATGTCAATGTTTGTAAGTG 58.131 39.130 0.00 0.00 31.27 3.16
2162 3013 2.627945 AGTATTTTCTTGATCGCGGCA 58.372 42.857 6.13 1.62 0.00 5.69
2187 3038 6.315642 AGTGATGTAATGAAAGCAGATGACAG 59.684 38.462 0.00 0.00 0.00 3.51
2347 3398 1.621317 TCGTTTACCACAGGATGCTGA 59.379 47.619 22.24 0.00 42.53 4.26
2405 3456 2.810274 GTCGACATAGACTATGGCCGTA 59.190 50.000 23.27 4.19 41.25 4.02
2504 3787 2.038387 TGGCCTCCGCTTTTCTTATC 57.962 50.000 3.32 0.00 34.44 1.75
2507 3790 2.214347 GCCTCCGCTTTTCTTATCTCC 58.786 52.381 0.00 0.00 0.00 3.71
2510 3793 3.493524 CCTCCGCTTTTCTTATCTCCCTC 60.494 52.174 0.00 0.00 0.00 4.30
2542 3832 8.272866 AGCGTTAATTTGCACAAATAGTTTTTC 58.727 29.630 8.92 0.00 39.88 2.29
2549 4028 5.885881 TGCACAAATAGTTTTTCGTTCAGT 58.114 33.333 0.00 0.00 0.00 3.41
2595 4076 9.482175 ACTTACTATCTAATCCTCTGAAACACT 57.518 33.333 0.00 0.00 0.00 3.55
2610 4094 8.902540 TCTGAAACACTAAACACATCAGTATT 57.097 30.769 0.00 0.00 35.50 1.89
2731 4224 6.775142 TCTTTCACCCTAATGTCATTGTCAAA 59.225 34.615 8.39 0.00 0.00 2.69
2778 4271 4.378459 GGCTCTTGTTTACCGTTCATTGAG 60.378 45.833 0.00 0.00 0.00 3.02
2794 4287 4.162131 TCATTGAGGTGCATGAAGCTACTA 59.838 41.667 5.08 0.00 45.94 1.82
2813 4306 8.254508 AGCTACTAATTAAGGTGAGAACTCTTG 58.745 37.037 3.51 0.00 0.00 3.02
2820 4313 3.251484 AGGTGAGAACTCTTGGGATTGA 58.749 45.455 3.51 0.00 0.00 2.57
2963 4479 3.844211 AGGGTTGTGCTATGACTCCTTTA 59.156 43.478 0.00 0.00 0.00 1.85
2976 4492 5.302360 TGACTCCTTTATTGTTTGCTACGT 58.698 37.500 0.00 0.00 0.00 3.57
3298 4816 0.189822 GACCTATCAGGGCTCCTCCT 59.810 60.000 0.00 0.00 41.45 3.69
3337 4855 1.133790 GCCTCAGCGCAATTGAATCTT 59.866 47.619 11.47 0.00 0.00 2.40
3396 4914 4.961730 AGGATACAGCCCAATTTGCAATTA 59.038 37.500 0.00 0.00 41.41 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.316987 AGCAAGCTAGATTTTTACACAGGT 58.683 37.500 0.00 0.00 0.00 4.00
27 28 4.981812 AGTTTTACCCCTTTACACTCAGG 58.018 43.478 0.00 0.00 0.00 3.86
93 94 2.626840 GCAAAAGAACAAAGGCACCAA 58.373 42.857 0.00 0.00 0.00 3.67
97 98 2.685897 AGTACGCAAAAGAACAAAGGCA 59.314 40.909 0.00 0.00 0.00 4.75
98 99 3.242936 TGAGTACGCAAAAGAACAAAGGC 60.243 43.478 0.00 0.00 0.00 4.35
233 724 2.042831 GGCCGCTTTGACTGCAGAT 61.043 57.895 23.35 4.35 0.00 2.90
256 747 0.537143 CCTGTGCCTACCTTGTGCAA 60.537 55.000 0.00 0.00 36.65 4.08
258 749 0.674895 CTCCTGTGCCTACCTTGTGC 60.675 60.000 0.00 0.00 0.00 4.57
266 757 0.898326 TCTGCGTTCTCCTGTGCCTA 60.898 55.000 0.00 0.00 0.00 3.93
267 758 2.210013 TCTGCGTTCTCCTGTGCCT 61.210 57.895 0.00 0.00 0.00 4.75
268 759 2.029844 GTCTGCGTTCTCCTGTGCC 61.030 63.158 0.00 0.00 0.00 5.01
269 760 2.375766 CGTCTGCGTTCTCCTGTGC 61.376 63.158 0.00 0.00 0.00 4.57
270 761 1.734477 CCGTCTGCGTTCTCCTGTG 60.734 63.158 0.00 0.00 36.15 3.66
271 762 2.651361 CCGTCTGCGTTCTCCTGT 59.349 61.111 0.00 0.00 36.15 4.00
390 882 1.005097 TGGAGGGAGTACTACGCTGAA 59.995 52.381 13.81 3.15 0.00 3.02
397 889 7.947782 ATATTTTGGAATGGAGGGAGTACTA 57.052 36.000 0.00 0.00 0.00 1.82
402 894 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
403 895 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
404 896 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
408 900 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
409 901 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
410 902 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
411 903 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
412 904 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
413 905 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
414 906 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
415 907 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
416 908 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
430 922 2.307309 TTGAACCTCGTGAAGCGCG 61.307 57.895 0.00 0.00 41.07 6.86
431 923 1.204312 GTTGAACCTCGTGAAGCGC 59.796 57.895 0.00 0.00 41.07 5.92
432 924 1.217882 AAGTTGAACCTCGTGAAGCG 58.782 50.000 0.00 0.00 43.01 4.68
433 925 2.612212 TCAAAGTTGAACCTCGTGAAGC 59.388 45.455 0.00 0.00 33.55 3.86
434 926 3.002348 GGTCAAAGTTGAACCTCGTGAAG 59.998 47.826 0.00 0.00 38.96 3.02
435 927 2.940410 GGTCAAAGTTGAACCTCGTGAA 59.060 45.455 0.00 0.00 38.96 3.18
436 928 2.093394 TGGTCAAAGTTGAACCTCGTGA 60.093 45.455 6.62 0.00 44.20 4.35
437 929 2.285083 TGGTCAAAGTTGAACCTCGTG 58.715 47.619 6.62 0.00 44.20 4.35
438 930 2.702592 TGGTCAAAGTTGAACCTCGT 57.297 45.000 6.62 0.00 44.20 4.18
439 931 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
440 932 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
441 933 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
442 934 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
443 935 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
445 937 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
446 938 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
447 939 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
448 940 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
449 941 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
450 942 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
451 943 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
452 944 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
453 945 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
454 946 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
455 947 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
456 948 7.590279 AGTTGGTCTCGTTGGTTAAATTTATG 58.410 34.615 0.00 0.00 0.00 1.90
457 949 7.754851 AGTTGGTCTCGTTGGTTAAATTTAT 57.245 32.000 0.00 0.00 0.00 1.40
458 950 7.095691 CGTAGTTGGTCTCGTTGGTTAAATTTA 60.096 37.037 0.00 0.00 0.00 1.40
459 951 6.293027 CGTAGTTGGTCTCGTTGGTTAAATTT 60.293 38.462 0.00 0.00 0.00 1.82
460 952 5.178067 CGTAGTTGGTCTCGTTGGTTAAATT 59.822 40.000 0.00 0.00 0.00 1.82
461 953 4.687483 CGTAGTTGGTCTCGTTGGTTAAAT 59.313 41.667 0.00 0.00 0.00 1.40
462 954 4.050553 CGTAGTTGGTCTCGTTGGTTAAA 58.949 43.478 0.00 0.00 0.00 1.52
463 955 3.317711 TCGTAGTTGGTCTCGTTGGTTAA 59.682 43.478 0.00 0.00 0.00 2.01
464 956 2.884012 TCGTAGTTGGTCTCGTTGGTTA 59.116 45.455 0.00 0.00 0.00 2.85
465 957 1.682854 TCGTAGTTGGTCTCGTTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
466 958 1.000938 GTCGTAGTTGGTCTCGTTGGT 60.001 52.381 0.00 0.00 0.00 3.67
467 959 1.694639 GTCGTAGTTGGTCTCGTTGG 58.305 55.000 0.00 0.00 0.00 3.77
468 960 1.324718 CGTCGTAGTTGGTCTCGTTG 58.675 55.000 0.00 0.00 0.00 4.10
469 961 0.239347 CCGTCGTAGTTGGTCTCGTT 59.761 55.000 0.00 0.00 0.00 3.85
470 962 1.580845 CCCGTCGTAGTTGGTCTCGT 61.581 60.000 0.00 0.00 0.00 4.18
471 963 1.136147 CCCGTCGTAGTTGGTCTCG 59.864 63.158 0.00 0.00 0.00 4.04
472 964 0.450983 CTCCCGTCGTAGTTGGTCTC 59.549 60.000 0.00 0.00 0.00 3.36
473 965 0.037303 TCTCCCGTCGTAGTTGGTCT 59.963 55.000 0.00 0.00 0.00 3.85
474 966 0.883833 TTCTCCCGTCGTAGTTGGTC 59.116 55.000 0.00 0.00 0.00 4.02
475 967 1.331214 TTTCTCCCGTCGTAGTTGGT 58.669 50.000 0.00 0.00 0.00 3.67
476 968 2.443887 TTTTCTCCCGTCGTAGTTGG 57.556 50.000 0.00 0.00 0.00 3.77
525 1017 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
526 1018 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
527 1019 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
528 1020 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
529 1021 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
530 1022 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
531 1023 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
556 1048 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
557 1049 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
558 1050 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
559 1051 9.590451 TCGTAAATTTAACTATCAAGACCGATT 57.410 29.630 0.00 0.00 0.00 3.34
560 1052 9.760077 ATCGTAAATTTAACTATCAAGACCGAT 57.240 29.630 0.00 3.26 0.00 4.18
561 1053 9.241317 GATCGTAAATTTAACTATCAAGACCGA 57.759 33.333 0.00 1.00 0.00 4.69
562 1054 9.027129 TGATCGTAAATTTAACTATCAAGACCG 57.973 33.333 12.52 4.05 29.20 4.79
572 1064 9.394477 GCTTCAACTTTGATCGTAAATTTAACT 57.606 29.630 0.00 0.00 37.00 2.24
573 1065 9.176181 TGCTTCAACTTTGATCGTAAATTTAAC 57.824 29.630 0.00 0.00 37.00 2.01
574 1066 9.176181 GTGCTTCAACTTTGATCGTAAATTTAA 57.824 29.630 0.00 0.00 37.00 1.52
575 1067 7.532546 CGTGCTTCAACTTTGATCGTAAATTTA 59.467 33.333 0.00 0.00 37.00 1.40
576 1068 6.359617 CGTGCTTCAACTTTGATCGTAAATTT 59.640 34.615 0.00 0.00 37.00 1.82
577 1069 5.851177 CGTGCTTCAACTTTGATCGTAAATT 59.149 36.000 0.00 0.00 37.00 1.82
578 1070 5.049680 ACGTGCTTCAACTTTGATCGTAAAT 60.050 36.000 0.00 0.00 37.00 1.40
579 1071 4.271533 ACGTGCTTCAACTTTGATCGTAAA 59.728 37.500 0.00 0.00 37.00 2.01
580 1072 3.805422 ACGTGCTTCAACTTTGATCGTAA 59.195 39.130 0.00 0.00 37.00 3.18
581 1073 3.183574 CACGTGCTTCAACTTTGATCGTA 59.816 43.478 0.82 0.00 37.00 3.43
582 1074 2.032894 CACGTGCTTCAACTTTGATCGT 60.033 45.455 0.82 0.56 37.00 3.73
583 1075 2.563976 CACGTGCTTCAACTTTGATCG 58.436 47.619 0.82 0.01 37.00 3.69
584 1076 2.548057 TCCACGTGCTTCAACTTTGATC 59.452 45.455 10.91 0.00 37.00 2.92
585 1077 2.571212 TCCACGTGCTTCAACTTTGAT 58.429 42.857 10.91 0.00 37.00 2.57
586 1078 2.031258 TCCACGTGCTTCAACTTTGA 57.969 45.000 10.91 0.00 34.92 2.69
587 1079 3.745975 TCTATCCACGTGCTTCAACTTTG 59.254 43.478 10.91 0.00 0.00 2.77
588 1080 3.997021 CTCTATCCACGTGCTTCAACTTT 59.003 43.478 10.91 0.00 0.00 2.66
589 1081 3.589988 CTCTATCCACGTGCTTCAACTT 58.410 45.455 10.91 0.00 0.00 2.66
590 1082 2.093973 CCTCTATCCACGTGCTTCAACT 60.094 50.000 10.91 0.00 0.00 3.16
591 1083 2.094182 TCCTCTATCCACGTGCTTCAAC 60.094 50.000 10.91 0.00 0.00 3.18
592 1084 2.176045 TCCTCTATCCACGTGCTTCAA 58.824 47.619 10.91 0.00 0.00 2.69
593 1085 1.847328 TCCTCTATCCACGTGCTTCA 58.153 50.000 10.91 0.00 0.00 3.02
594 1086 2.815478 CTTCCTCTATCCACGTGCTTC 58.185 52.381 10.91 0.00 0.00 3.86
595 1087 1.134670 GCTTCCTCTATCCACGTGCTT 60.135 52.381 10.91 1.47 0.00 3.91
596 1088 0.461961 GCTTCCTCTATCCACGTGCT 59.538 55.000 10.91 1.67 0.00 4.40
597 1089 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.000 10.91 0.00 0.00 5.34
598 1090 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
599 1091 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
600 1092 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
601 1093 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
602 1094 4.716784 ACAATGTAGTGCTTCCTCTATCCA 59.283 41.667 0.00 0.00 0.00 3.41
603 1095 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
604 1096 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
605 1097 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
606 1098 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
607 1099 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
608 1100 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
609 1101 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
610 1102 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
611 1103 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
612 1104 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
613 1105 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
614 1106 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
615 1107 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
616 1108 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
617 1109 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
618 1110 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
619 1111 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
620 1112 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
621 1113 3.464828 AGTACTCCCTCCATTCCACAAT 58.535 45.455 0.00 0.00 0.00 2.71
622 1114 2.915869 AGTACTCCCTCCATTCCACAA 58.084 47.619 0.00 0.00 0.00 3.33
623 1115 2.571653 CAAGTACTCCCTCCATTCCACA 59.428 50.000 0.00 0.00 0.00 4.17
624 1116 2.681097 GCAAGTACTCCCTCCATTCCAC 60.681 54.545 0.00 0.00 0.00 4.02
625 1117 1.559682 GCAAGTACTCCCTCCATTCCA 59.440 52.381 0.00 0.00 0.00 3.53
626 1118 1.473434 CGCAAGTACTCCCTCCATTCC 60.473 57.143 0.00 0.00 0.00 3.01
627 1119 1.473434 CCGCAAGTACTCCCTCCATTC 60.473 57.143 0.00 0.00 0.00 2.67
628 1120 0.541863 CCGCAAGTACTCCCTCCATT 59.458 55.000 0.00 0.00 0.00 3.16
629 1121 0.617820 ACCGCAAGTACTCCCTCCAT 60.618 55.000 0.00 0.00 0.00 3.41
630 1122 0.834687 AACCGCAAGTACTCCCTCCA 60.835 55.000 0.00 0.00 0.00 3.86
631 1123 0.323957 AAACCGCAAGTACTCCCTCC 59.676 55.000 0.00 0.00 0.00 4.30
632 1124 1.439679 CAAACCGCAAGTACTCCCTC 58.560 55.000 0.00 0.00 0.00 4.30
633 1125 0.036306 CCAAACCGCAAGTACTCCCT 59.964 55.000 0.00 0.00 0.00 4.20
634 1126 1.583495 GCCAAACCGCAAGTACTCCC 61.583 60.000 0.00 0.00 0.00 4.30
635 1127 1.873863 GCCAAACCGCAAGTACTCC 59.126 57.895 0.00 0.00 0.00 3.85
636 1128 1.495951 CGCCAAACCGCAAGTACTC 59.504 57.895 0.00 0.00 0.00 2.59
637 1129 3.650369 CGCCAAACCGCAAGTACT 58.350 55.556 0.00 0.00 0.00 2.73
686 1178 1.211703 TGGATGTATGGCACCAATCGT 59.788 47.619 0.00 0.00 0.00 3.73
694 1186 0.181114 GCTGAGGTGGATGTATGGCA 59.819 55.000 0.00 0.00 0.00 4.92
695 1187 0.181114 TGCTGAGGTGGATGTATGGC 59.819 55.000 0.00 0.00 0.00 4.40
697 1189 2.105306 TCCATGCTGAGGTGGATGTATG 59.895 50.000 0.00 0.00 39.51 2.39
698 1190 2.371179 CTCCATGCTGAGGTGGATGTAT 59.629 50.000 0.00 0.00 43.20 2.29
710 1202 1.528542 CATCCAGGCCTCCATGCTG 60.529 63.158 0.00 0.00 0.00 4.41
776 1268 0.607620 GAACCACTGCTCTGCTCTCT 59.392 55.000 0.00 0.00 0.00 3.10
829 1321 1.445582 CCCGTTAAAGCTCGCGAGT 60.446 57.895 34.46 19.41 0.00 4.18
831 1323 2.125832 CCCCGTTAAAGCTCGCGA 60.126 61.111 9.26 9.26 0.00 5.87
832 1324 3.861263 GCCCCGTTAAAGCTCGCG 61.861 66.667 0.00 0.00 0.00 5.87
833 1325 3.861263 CGCCCCGTTAAAGCTCGC 61.861 66.667 0.00 0.00 0.00 5.03
834 1326 2.125832 TCGCCCCGTTAAAGCTCG 60.126 61.111 0.00 0.00 0.00 5.03
835 1327 2.461945 GCTCGCCCCGTTAAAGCTC 61.462 63.158 0.00 0.00 0.00 4.09
836 1328 2.436115 GCTCGCCCCGTTAAAGCT 60.436 61.111 0.00 0.00 0.00 3.74
837 1329 2.436115 AGCTCGCCCCGTTAAAGC 60.436 61.111 0.00 0.00 0.00 3.51
1085 1585 1.147824 CGAGCAATCATCAGGGGCT 59.852 57.895 0.00 0.00 37.56 5.19
1115 1615 1.460699 GGAGAGGGGGCAAACAACT 59.539 57.895 0.00 0.00 0.00 3.16
1142 1642 3.890674 GTTAGGAACGCAGCCAGG 58.109 61.111 0.00 0.00 0.00 4.45
1190 1690 2.203126 CGCCTTGATGAGGGCCTC 60.203 66.667 26.95 26.95 46.40 4.70
1256 1769 0.954452 GGTGAGGAAAAGGCACAGTG 59.046 55.000 0.00 0.00 34.33 3.66
1257 1770 0.178990 GGGTGAGGAAAAGGCACAGT 60.179 55.000 0.00 0.00 34.33 3.55
1276 1805 1.672356 AAGCACGCAACTAGGCAGG 60.672 57.895 0.00 0.00 0.00 4.85
1281 1813 0.722469 CAACGCAAGCACGCAACTAG 60.722 55.000 0.00 0.00 45.62 2.57
1287 1819 2.277884 AACACAACGCAAGCACGC 60.278 55.556 0.00 0.00 45.62 5.34
1289 1830 3.888221 CGAACACAACGCAAGCAC 58.112 55.556 0.00 0.00 45.62 4.40
1298 1839 4.973055 CGGACCCCGCGAACACAA 62.973 66.667 8.23 0.00 41.17 3.33
1333 1874 0.791983 CGAAACAGAGCAATGCAGCG 60.792 55.000 8.35 0.00 40.15 5.18
1381 1999 2.358939 GGTGGACACCGTAACTACAG 57.641 55.000 5.63 0.00 42.29 2.74
1418 2133 2.223971 ACCGCGGTACAGAATATGAAGG 60.224 50.000 33.34 0.00 0.00 3.46
1434 2162 0.643820 GAGTAAAACATCCGACCGCG 59.356 55.000 0.00 0.00 37.24 6.46
1437 2165 1.717194 TGCGAGTAAAACATCCGACC 58.283 50.000 0.00 0.00 0.00 4.79
1465 2193 1.112113 GAGCTGAAGGGATACGGTCA 58.888 55.000 0.00 0.00 37.60 4.02
1466 2194 1.067821 CAGAGCTGAAGGGATACGGTC 59.932 57.143 0.00 0.00 37.60 4.79
1467 2195 1.115467 CAGAGCTGAAGGGATACGGT 58.885 55.000 0.00 0.00 37.60 4.83
1468 2196 1.115467 ACAGAGCTGAAGGGATACGG 58.885 55.000 4.21 0.00 37.60 4.02
1469 2197 1.202463 CCACAGAGCTGAAGGGATACG 60.202 57.143 4.21 0.00 37.60 3.06
1470 2198 2.111384 TCCACAGAGCTGAAGGGATAC 58.889 52.381 4.21 0.00 32.85 2.24
1471 2199 2.550277 TCCACAGAGCTGAAGGGATA 57.450 50.000 4.21 0.00 32.85 2.59
1476 2204 4.940046 ACATTACATTCCACAGAGCTGAAG 59.060 41.667 4.21 0.00 0.00 3.02
1479 2207 5.633830 AAACATTACATTCCACAGAGCTG 57.366 39.130 0.00 0.00 0.00 4.24
1488 2216 4.875544 TGCTAGCGAAACATTACATTCC 57.124 40.909 10.77 0.00 0.00 3.01
1516 2244 4.463891 TCTGCATATGTGTCTGTTGAGAGA 59.536 41.667 4.29 0.00 0.00 3.10
1517 2245 4.752146 TCTGCATATGTGTCTGTTGAGAG 58.248 43.478 4.29 0.00 0.00 3.20
1547 2275 8.201464 ACATTTATACCGTCACACATTCATCTA 58.799 33.333 0.00 0.00 0.00 1.98
1549 2277 7.125755 CACATTTATACCGTCACACATTCATC 58.874 38.462 0.00 0.00 0.00 2.92
1550 2278 6.458206 GCACATTTATACCGTCACACATTCAT 60.458 38.462 0.00 0.00 0.00 2.57
1552 2280 5.163804 TGCACATTTATACCGTCACACATTC 60.164 40.000 0.00 0.00 0.00 2.67
1555 2283 3.665190 TGCACATTTATACCGTCACACA 58.335 40.909 0.00 0.00 0.00 3.72
1556 2284 4.671880 TTGCACATTTATACCGTCACAC 57.328 40.909 0.00 0.00 0.00 3.82
1557 2285 4.757657 AGTTTGCACATTTATACCGTCACA 59.242 37.500 0.00 0.00 0.00 3.58
1619 2347 9.944376 AGAGCAATTGACTAGACTGTAAATTTA 57.056 29.630 10.34 0.00 30.72 1.40
1695 2478 4.666655 GCAACACGTAATGATCTGACACAC 60.667 45.833 4.09 0.00 0.00 3.82
1708 2491 2.292016 CAGTGAAATGGGCAACACGTAA 59.708 45.455 0.00 0.00 38.15 3.18
1710 2493 0.667993 CAGTGAAATGGGCAACACGT 59.332 50.000 0.00 0.00 38.15 4.49
1712 2495 2.100584 TGAACAGTGAAATGGGCAACAC 59.899 45.455 0.00 0.00 39.74 3.32
1714 2497 2.362077 AGTGAACAGTGAAATGGGCAAC 59.638 45.455 0.00 0.00 0.00 4.17
1751 2568 4.690748 TGAAGAAGCCAATAGACAAACTCG 59.309 41.667 0.00 0.00 0.00 4.18
1752 2569 6.560253 TTGAAGAAGCCAATAGACAAACTC 57.440 37.500 0.00 0.00 0.00 3.01
1754 2571 6.583806 CACATTGAAGAAGCCAATAGACAAAC 59.416 38.462 0.00 0.00 33.35 2.93
1772 2593 6.815142 CACAGAAGTAGACATGATCACATTGA 59.185 38.462 0.00 0.00 34.15 2.57
1773 2594 6.036844 CCACAGAAGTAGACATGATCACATTG 59.963 42.308 0.00 0.00 34.15 2.82
1793 2615 2.749621 GCTTCACAATACCTTCCCACAG 59.250 50.000 0.00 0.00 0.00 3.66
1796 2618 1.349688 ACGCTTCACAATACCTTCCCA 59.650 47.619 0.00 0.00 0.00 4.37
1810 2632 4.379499 CCATTTCCTTTGGTAAGACGCTTC 60.379 45.833 0.00 0.00 32.92 3.86
1854 2676 3.261897 AGAGAGTCCATCGGTGTTGAAAT 59.738 43.478 0.00 0.00 0.00 2.17
2049 2882 3.909430 TCAACACAACCGTAGATCTCAC 58.091 45.455 0.00 0.00 0.00 3.51
2118 2969 1.589716 GGCAGCAACATCACCAGACC 61.590 60.000 0.00 0.00 0.00 3.85
2158 3009 2.419673 TGCTTTCATTACATCACTGCCG 59.580 45.455 0.00 0.00 0.00 5.69
2162 3013 6.175471 TGTCATCTGCTTTCATTACATCACT 58.825 36.000 0.00 0.00 0.00 3.41
2187 3038 2.158813 TGGTGGAGAACTGTTTGTCCTC 60.159 50.000 18.36 15.53 44.15 3.71
2293 3313 8.131100 CCATCAGTCATGTTTAACCATAACATC 58.869 37.037 0.00 0.00 42.63 3.06
2504 3787 2.579207 TTAACGCTGAATCGAGGGAG 57.421 50.000 0.00 0.00 0.00 4.30
2507 3790 3.181511 TGCAAATTAACGCTGAATCGAGG 60.182 43.478 0.00 0.00 0.00 4.63
2510 3793 3.487536 TGTGCAAATTAACGCTGAATCG 58.512 40.909 0.00 0.00 0.00 3.34
2542 3832 6.055588 ACCATCCAAATCCTAATACTGAACG 58.944 40.000 0.00 0.00 0.00 3.95
2634 4118 9.540538 TTTATTTTGAGATGAAAAGGGTATCCA 57.459 29.630 0.00 0.00 34.83 3.41
2713 4206 6.039717 CCATACCTTTGACAATGACATTAGGG 59.960 42.308 15.32 6.97 0.00 3.53
2731 4224 3.464828 ACACAGAGGATTTCCCATACCT 58.535 45.455 0.00 0.00 37.41 3.08
2778 4271 5.823045 ACCTTAATTAGTAGCTTCATGCACC 59.177 40.000 0.00 0.00 45.94 5.01
2794 4287 5.843019 TCCCAAGAGTTCTCACCTTAATT 57.157 39.130 2.64 0.00 0.00 1.40
2826 4319 8.589338 AGTGGGCAAAATTACAACATAACAATA 58.411 29.630 0.00 0.00 0.00 1.90
2831 4324 5.540337 TGGAGTGGGCAAAATTACAACATAA 59.460 36.000 0.00 0.00 0.00 1.90
2858 4351 7.493971 ACATCAACTTATAAGCATGACAGAGAC 59.506 37.037 18.63 0.00 30.92 3.36
2898 4414 2.288395 CCTGTGGAAAGGATTGTGCAAC 60.288 50.000 0.00 0.00 40.02 4.17
2963 4479 0.796312 CTCGCCACGTAGCAAACAAT 59.204 50.000 6.80 0.00 0.00 2.71
2976 4492 1.483415 GTTGGTATAACCTCCTCGCCA 59.517 52.381 0.00 0.00 39.58 5.69
3150 4668 3.763360 TGCCCAAATAACTCCAGAACATG 59.237 43.478 0.00 0.00 0.00 3.21
3157 4675 3.737559 ACTCATGCCCAAATAACTCCA 57.262 42.857 0.00 0.00 0.00 3.86
3396 4914 9.868277 CAGAAAGTGACAAGTCTAAAGATAGAT 57.132 33.333 1.53 0.00 40.21 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.