Multiple sequence alignment - TraesCS3A01G126100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G126100 chr3A 100.000 6404 0 0 1 6404 101871431 101865028 0.000000e+00 11827.0
1 TraesCS3A01G126100 chr3A 80.306 589 85 21 778 1355 102307937 102307369 3.570000e-112 416.0
2 TraesCS3A01G126100 chr3A 78.378 481 82 11 890 1362 101891650 101891184 6.280000e-75 292.0
3 TraesCS3A01G126100 chr3A 86.038 265 32 5 2564 2824 101889446 101889183 4.890000e-71 279.0
4 TraesCS3A01G126100 chr3A 79.859 283 38 15 4878 5157 102280018 102280284 8.480000e-44 189.0
5 TraesCS3A01G126100 chr3A 88.889 54 6 0 5680 5733 102280566 102280619 4.140000e-07 67.6
6 TraesCS3A01G126100 chr3A 90.000 50 5 0 5684 5733 101880566 101880517 1.490000e-06 65.8
7 TraesCS3A01G126100 chr3B 92.489 2676 129 28 225 2841 133807207 133804545 0.000000e+00 3762.0
8 TraesCS3A01G126100 chr3B 96.471 1870 50 12 2838 4699 133804514 133802653 0.000000e+00 3073.0
9 TraesCS3A01G126100 chr3B 94.681 376 4 3 4878 5240 133802660 133802288 2.590000e-158 569.0
10 TraesCS3A01G126100 chr3B 78.479 539 97 13 832 1362 133817289 133816762 1.030000e-87 335.0
11 TraesCS3A01G126100 chr3B 76.788 685 94 38 2566 3208 133814931 133814270 2.230000e-84 324.0
12 TraesCS3A01G126100 chr3B 96.133 181 7 0 5589 5769 133802287 133802107 4.850000e-76 296.0
13 TraesCS3A01G126100 chr3B 80.519 308 45 12 2525 2822 135684196 135684498 8.360000e-54 222.0
14 TraesCS3A01G126100 chr3B 80.069 291 36 10 4878 5162 134972454 134972728 5.070000e-46 196.0
15 TraesCS3A01G126100 chr3B 84.416 77 8 4 5680 5756 134973004 134973076 8.910000e-09 73.1
16 TraesCS3A01G126100 chr3B 84.416 77 8 4 5680 5756 134996688 134996616 8.910000e-09 73.1
17 TraesCS3A01G126100 chr3B 88.000 50 6 0 5684 5733 133811140 133811091 6.930000e-05 60.2
18 TraesCS3A01G126100 chr3D 91.950 2646 123 24 262 2841 84901250 84898629 0.000000e+00 3624.0
19 TraesCS3A01G126100 chr3D 94.286 1540 73 9 2838 4369 84898598 84897066 0.000000e+00 2342.0
20 TraesCS3A01G126100 chr3D 78.889 900 137 31 778 1663 85411059 85410199 1.560000e-155 560.0
21 TraesCS3A01G126100 chr3D 88.918 379 13 9 4878 5240 84896813 84896448 2.120000e-119 440.0
22 TraesCS3A01G126100 chr3D 88.764 267 23 4 1 267 84901597 84901338 2.880000e-83 320.0
23 TraesCS3A01G126100 chr3D 95.050 202 8 1 4500 4699 84897007 84896806 3.730000e-82 316.0
24 TraesCS3A01G126100 chr3D 78.311 521 84 18 841 1338 85238058 85238572 6.240000e-80 309.0
25 TraesCS3A01G126100 chr3D 83.234 334 46 8 2508 2836 85247234 85247562 1.350000e-76 298.0
26 TraesCS3A01G126100 chr3D 86.364 264 32 4 2564 2824 84908290 84908028 1.050000e-72 285.0
27 TraesCS3A01G126100 chr3D 83.214 280 36 5 4878 5153 84905505 84905233 4.960000e-61 246.0
28 TraesCS3A01G126100 chr3D 79.762 336 56 11 2537 2863 85408895 85408563 3.860000e-57 233.0
29 TraesCS3A01G126100 chr3D 79.688 320 56 7 2508 2822 84034149 84033834 8.360000e-54 222.0
30 TraesCS3A01G126100 chr3D 99.187 123 1 0 5592 5714 84896444 84896322 8.360000e-54 222.0
31 TraesCS3A01G126100 chr3D 78.189 243 41 6 2899 3140 84033724 84033493 1.860000e-30 145.0
32 TraesCS3A01G126100 chr3D 88.000 50 6 0 5684 5733 84904713 84904664 6.930000e-05 60.2
33 TraesCS3A01G126100 chr3D 88.000 50 6 0 5684 5733 85250962 85251011 6.930000e-05 60.2
34 TraesCS3A01G126100 chr2A 97.488 637 15 1 5768 6403 81491530 81490894 0.000000e+00 1086.0
35 TraesCS3A01G126100 chr2A 98.889 180 1 1 4698 4877 364400599 364400777 2.880000e-83 320.0
36 TraesCS3A01G126100 chr2A 98.315 178 1 1 4699 4876 252605749 252605924 1.730000e-80 311.0
37 TraesCS3A01G126100 chr1A 96.703 637 20 1 5768 6403 566225445 566224809 0.000000e+00 1059.0
38 TraesCS3A01G126100 chr5D 98.563 348 5 0 5240 5587 503297889 503298236 3.280000e-172 616.0
39 TraesCS3A01G126100 chr5D 97.989 348 6 1 5240 5587 6170926 6170580 2.550000e-168 603.0
40 TraesCS3A01G126100 chr5D 97.989 348 5 1 5240 5587 6269992 6269647 2.550000e-168 603.0
41 TraesCS3A01G126100 chr5D 97.414 348 8 1 5240 5587 329161980 329161634 5.530000e-165 592.0
42 TraesCS3A01G126100 chr2D 98.563 348 4 1 5240 5587 638430414 638430760 1.180000e-171 614.0
43 TraesCS3A01G126100 chr1D 97.701 348 5 2 5240 5587 254441025 254441369 4.270000e-166 595.0
44 TraesCS3A01G126100 chr1D 97.414 348 8 1 5240 5587 51865960 51865614 5.530000e-165 592.0
45 TraesCS3A01G126100 chr4A 97.421 349 7 2 5240 5587 309484041 309483694 1.540000e-165 593.0
46 TraesCS3A01G126100 chr4B 97.167 353 4 2 5240 5587 308673785 308673434 5.530000e-165 592.0
47 TraesCS3A01G126100 chrUn 81.664 589 77 20 778 1355 297431106 297431674 1.630000e-125 460.0
48 TraesCS3A01G126100 chrUn 81.664 589 77 20 778 1355 297436058 297436626 1.630000e-125 460.0
49 TraesCS3A01G126100 chr7B 99.438 178 0 1 4700 4877 745083064 745082888 8.010000e-84 322.0
50 TraesCS3A01G126100 chr7B 98.883 179 0 1 4699 4877 684563197 684563373 1.040000e-82 318.0
51 TraesCS3A01G126100 chr7B 98.324 179 0 1 4699 4877 661913343 661913168 1.730000e-80 311.0
52 TraesCS3A01G126100 chr2B 98.883 179 0 1 4699 4877 719157044 719157220 1.040000e-82 318.0
53 TraesCS3A01G126100 chr5A 98.333 180 1 1 4698 4877 651552072 651552249 1.340000e-81 315.0
54 TraesCS3A01G126100 chr5B 96.354 192 4 2 4694 4885 551521848 551521660 4.820000e-81 313.0
55 TraesCS3A01G126100 chr6B 98.315 178 1 1 4700 4877 603888330 603888155 1.730000e-80 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G126100 chr3A 101865028 101871431 6403 True 11827.000000 11827 100.000000 1 6404 1 chr3A.!!$R1 6403
1 TraesCS3A01G126100 chr3A 102307369 102307937 568 True 416.000000 416 80.306000 778 1355 1 chr3A.!!$R3 577
2 TraesCS3A01G126100 chr3A 101889183 101891650 2467 True 285.500000 292 82.208000 890 2824 2 chr3A.!!$R4 1934
3 TraesCS3A01G126100 chr3B 133802107 133817289 15182 True 1202.742857 3762 89.005857 225 5769 7 chr3B.!!$R2 5544
4 TraesCS3A01G126100 chr3D 84896322 84908290 11968 True 872.800000 3624 90.637000 1 5733 9 chr3D.!!$R2 5732
5 TraesCS3A01G126100 chr3D 85408563 85411059 2496 True 396.500000 560 79.325500 778 2863 2 chr3D.!!$R3 2085
6 TraesCS3A01G126100 chr3D 85238058 85238572 514 False 309.000000 309 78.311000 841 1338 1 chr3D.!!$F1 497
7 TraesCS3A01G126100 chr2A 81490894 81491530 636 True 1086.000000 1086 97.488000 5768 6403 1 chr2A.!!$R1 635
8 TraesCS3A01G126100 chr1A 566224809 566225445 636 True 1059.000000 1059 96.703000 5768 6403 1 chr1A.!!$R1 635
9 TraesCS3A01G126100 chrUn 297431106 297431674 568 False 460.000000 460 81.664000 778 1355 1 chrUn.!!$F1 577
10 TraesCS3A01G126100 chrUn 297436058 297436626 568 False 460.000000 460 81.664000 778 1355 1 chrUn.!!$F2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 7183 0.173255 CTTGCCCGCCAATACAAAGG 59.827 55.000 0.00 0.0 31.91 3.11 F
386 7194 0.252197 ATACAAAGGGCGTGGACTCC 59.748 55.000 0.00 0.0 0.00 3.85 F
630 7446 0.387239 GCAACAACGCTCCCATGAAC 60.387 55.000 0.00 0.0 0.00 3.18 F
1810 19979 0.459899 AATGCATGGAGACGCTCGTA 59.540 50.000 0.00 0.0 0.00 3.43 F
2007 20190 0.669077 CAGCGCGAGGAGGTTATACT 59.331 55.000 12.10 0.0 0.00 2.12 F
2384 20576 1.321743 GACACGATTGCAAGTCTAGCG 59.678 52.381 4.94 0.0 35.58 4.26 F
3093 21809 2.043939 TCCTGGTCTAACAAGAGGGCTA 59.956 50.000 0.00 0.0 0.00 3.93 F
3859 22586 2.203126 GGATCTGAGCAAGGCCCG 60.203 66.667 0.00 0.0 0.00 6.13 F
4701 23445 0.033796 ATGGGTGATGGTGAAGGCAG 60.034 55.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 20553 0.599991 AGACTTGCAATCGTGTCGCA 60.600 50.000 0.00 0.0 34.92 5.10 R
2434 20628 7.490962 ACGAACTCAATAACTGACAATCAAA 57.509 32.000 0.00 0.0 0.00 2.69 R
2593 21270 5.246037 ATTGCCATTCAAAAGGGAACCAGA 61.246 41.667 0.00 0.0 45.68 3.86 R
3598 22325 3.447742 ACTTTTTCTTCTTTGGCAAGCG 58.552 40.909 0.00 0.0 0.00 4.68 R
3963 22690 0.996583 TTCCTTGTCGCCCCCTAAAT 59.003 50.000 0.00 0.0 0.00 1.40 R
4401 23128 5.694816 TGGCTTGTTCAATTTACATGTACG 58.305 37.500 4.68 0.0 0.00 3.67 R
4646 23390 0.039437 CTCCTGTTCGCGTACAGTGT 60.039 55.000 34.05 0.0 43.17 3.55 R
4875 23619 0.257328 TGACAAAGCACCTTCACCCA 59.743 50.000 0.00 0.0 0.00 4.51 R
6337 25098 0.105039 ATTCGAATCTCCACCGGCTC 59.895 55.000 4.39 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 6719 1.196012 GACGGGAGGAAGGAATCAGT 58.804 55.000 0.00 0.00 0.00 3.41
31 6725 1.825474 GAGGAAGGAATCAGTCGGTGA 59.175 52.381 0.00 0.00 40.38 4.02
38 6732 6.150474 GGAAGGAATCAGTCGGTGAAATTAAA 59.850 38.462 0.00 0.00 39.19 1.52
39 6733 7.148069 GGAAGGAATCAGTCGGTGAAATTAAAT 60.148 37.037 0.00 0.00 39.19 1.40
40 6734 8.801882 AAGGAATCAGTCGGTGAAATTAAATA 57.198 30.769 0.00 0.00 39.19 1.40
41 6735 8.801882 AGGAATCAGTCGGTGAAATTAAATAA 57.198 30.769 0.00 0.00 39.19 1.40
42 6736 9.238368 AGGAATCAGTCGGTGAAATTAAATAAA 57.762 29.630 0.00 0.00 39.19 1.40
145 6839 0.322008 CTGAAGAAGGGGGCAGTCAC 60.322 60.000 0.00 0.00 0.00 3.67
152 6846 2.224159 GGGGGCAGTCACAGAAGGA 61.224 63.158 0.00 0.00 0.00 3.36
154 6848 1.484444 GGGGCAGTCACAGAAGGACT 61.484 60.000 0.00 0.00 46.11 3.85
193 6887 1.190643 AGCAGTAGGAGCAGAGTTCC 58.809 55.000 0.00 0.00 34.83 3.62
223 6917 3.677284 CTGCAGCGCTGGATCTGGT 62.677 63.158 36.47 0.00 0.00 4.00
320 7107 2.264480 CACGAGCCACATCCGGAA 59.736 61.111 9.01 0.00 0.00 4.30
321 7108 2.100631 CACGAGCCACATCCGGAAC 61.101 63.158 9.01 0.00 0.00 3.62
370 7178 1.384222 CCTTCCTTGCCCGCCAATAC 61.384 60.000 0.00 0.00 31.91 1.89
375 7183 0.173255 CTTGCCCGCCAATACAAAGG 59.827 55.000 0.00 0.00 31.91 3.11
386 7194 0.252197 ATACAAAGGGCGTGGACTCC 59.748 55.000 0.00 0.00 0.00 3.85
388 7196 1.672356 CAAAGGGCGTGGACTCCAG 60.672 63.158 0.00 0.00 32.34 3.86
424 7240 1.599797 CCCCAACTCCGAACCACAC 60.600 63.158 0.00 0.00 0.00 3.82
516 7332 1.457346 CCTTGGCCATGTCTCAGTTC 58.543 55.000 6.09 0.00 0.00 3.01
577 7393 1.218316 GAGGCTCCCGTGAACGATT 59.782 57.895 2.15 0.00 43.02 3.34
592 7408 3.551259 GATTCCCTCGAAGGTTGCA 57.449 52.632 0.00 0.00 31.93 4.08
609 7425 4.796231 AGCATCCACGACGACGCC 62.796 66.667 7.30 0.00 43.96 5.68
618 7434 4.364409 GACGACGCCGGCAACAAC 62.364 66.667 28.98 10.74 44.91 3.32
630 7446 0.387239 GCAACAACGCTCCCATGAAC 60.387 55.000 0.00 0.00 0.00 3.18
637 7453 1.160329 CGCTCCCATGAACGATTCCC 61.160 60.000 0.00 0.00 31.82 3.97
653 7469 3.217743 CCTCGACGGTAGCCCCTC 61.218 72.222 0.00 0.00 0.00 4.30
654 7470 2.124236 CTCGACGGTAGCCCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
655 7471 1.753463 CTCGACGGTAGCCCCTCTT 60.753 63.158 0.00 0.00 0.00 2.85
656 7472 1.304713 TCGACGGTAGCCCCTCTTT 60.305 57.895 0.00 0.00 0.00 2.52
657 7473 1.153628 CGACGGTAGCCCCTCTTTG 60.154 63.158 0.00 0.00 0.00 2.77
658 7474 1.449778 GACGGTAGCCCCTCTTTGC 60.450 63.158 0.00 0.00 0.00 3.68
659 7475 1.900545 GACGGTAGCCCCTCTTTGCT 61.901 60.000 0.00 0.00 41.57 3.91
670 7486 0.956633 CTCTTTGCTTGCTTGCTCCA 59.043 50.000 3.47 0.00 0.00 3.86
676 7492 1.656441 CTTGCTTGCTCCAGCGTTT 59.344 52.632 0.00 0.00 43.37 3.60
687 7504 0.955919 CCAGCGTTTGTTCCCTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
700 7517 0.547712 CCTCCTCCTTTCTGACCCCA 60.548 60.000 0.00 0.00 0.00 4.96
701 7518 1.362224 CTCCTCCTTTCTGACCCCAA 58.638 55.000 0.00 0.00 0.00 4.12
710 7527 4.082949 CCTTTCTGACCCCAAATTACGTTC 60.083 45.833 0.00 0.00 0.00 3.95
721 7561 5.448632 CCCAAATTACGTTCCTAATGCAGAC 60.449 44.000 0.00 0.00 0.00 3.51
729 7569 2.176045 TCCTAATGCAGACACGAAGGA 58.824 47.619 0.00 0.00 31.93 3.36
739 7579 4.111198 CAGACACGAAGGATCTCATGAAG 58.889 47.826 0.00 0.00 0.00 3.02
746 7586 1.146930 GATCTCATGAAGGCGGCCA 59.853 57.895 23.09 0.00 0.00 5.36
782 7622 4.099573 TCGATTCCCTCAAAGGTATCAGAC 59.900 45.833 0.00 0.00 31.93 3.51
861 7703 6.589907 TCTTTTCTTTTGGTTTTCTGTCTTGC 59.410 34.615 0.00 0.00 0.00 4.01
868 7710 6.463995 TTGGTTTTCTGTCTTGCTAATTGT 57.536 33.333 0.00 0.00 0.00 2.71
869 7711 7.575414 TTGGTTTTCTGTCTTGCTAATTGTA 57.425 32.000 0.00 0.00 0.00 2.41
870 7712 7.575414 TGGTTTTCTGTCTTGCTAATTGTAA 57.425 32.000 0.00 0.00 0.00 2.41
886 7737 9.503427 GCTAATTGTAATTGGTCTATTTGTGAC 57.497 33.333 0.27 0.00 30.49 3.67
896 7747 4.992951 GGTCTATTTGTGACGGTGTTTACT 59.007 41.667 0.00 0.00 35.45 2.24
900 7751 7.375017 GTCTATTTGTGACGGTGTTTACTTTTG 59.625 37.037 0.00 0.00 0.00 2.44
903 7755 2.944349 GTGACGGTGTTTACTTTTGGGA 59.056 45.455 0.00 0.00 0.00 4.37
936 18515 4.009370 ACAGAGTCTTACCAAAGGAAGC 57.991 45.455 0.00 0.00 33.22 3.86
1020 18599 0.467290 TGTTTGCCCAACTGGAGGTC 60.467 55.000 0.00 0.00 36.21 3.85
1098 18680 3.937706 CTGGTGCTGAAGGTCTTTATCTG 59.062 47.826 0.00 0.00 0.00 2.90
1104 18686 4.109050 CTGAAGGTCTTTATCTGTCGCTC 58.891 47.826 0.00 0.00 0.00 5.03
1110 18692 2.614520 TCTTTATCTGTCGCTCTCTCCG 59.385 50.000 0.00 0.00 0.00 4.63
1122 18705 2.870435 GCTCTCTCCGTGCTTAAAACCA 60.870 50.000 0.00 0.00 0.00 3.67
1262 18868 7.124347 TGTTGCTACCGTTAAGTATTTTCTG 57.876 36.000 0.00 0.00 0.00 3.02
1344 18951 1.407025 CCGCTAAAGGTTCTTCTCCCC 60.407 57.143 0.00 0.00 0.00 4.81
1485 19115 8.004087 AGAACATGACTTATGGGATCATTTTG 57.996 34.615 0.00 0.00 41.25 2.44
1488 19118 7.353525 ACATGACTTATGGGATCATTTTGGTA 58.646 34.615 0.00 0.00 41.25 3.25
1568 19198 2.507407 AAACTATGGCCGTGGAACAT 57.493 45.000 16.31 0.00 44.52 2.71
1627 19257 4.840115 ACATTGGAGATTTTGTTGGACCAT 59.160 37.500 0.00 0.00 0.00 3.55
1810 19979 0.459899 AATGCATGGAGACGCTCGTA 59.540 50.000 0.00 0.00 0.00 3.43
2007 20190 0.669077 CAGCGCGAGGAGGTTATACT 59.331 55.000 12.10 0.00 0.00 2.12
2110 20299 6.682423 TTGTTGGTCTCTATGCAACATATG 57.318 37.500 0.00 0.00 35.96 1.78
2203 20394 3.749665 ATGCTTTTAGGTTGCTTTGCA 57.250 38.095 0.00 0.00 36.47 4.08
2230 20421 9.104965 CCGTTGATTATACTAACAGGAAATTGA 57.895 33.333 0.00 0.00 0.00 2.57
2261 20452 6.368243 GTGCCTAGTAAAGTTGTCTTACCTTC 59.632 42.308 0.00 0.00 33.09 3.46
2361 20553 2.193087 ATTAAACCCCGGTGAGCGCT 62.193 55.000 11.27 11.27 0.00 5.92
2384 20576 1.321743 GACACGATTGCAAGTCTAGCG 59.678 52.381 4.94 0.00 35.58 4.26
2457 20651 7.017645 CCTTTGATTGTCAGTTATTGAGTTCG 58.982 38.462 0.00 0.00 36.21 3.95
2593 21270 9.872684 ATGTTCATGTTCTTTTCTATATCCCAT 57.127 29.630 0.00 0.00 0.00 4.00
2612 21290 3.196254 CCATCTGGTTCCCTTTTGAATGG 59.804 47.826 0.00 0.00 0.00 3.16
2814 21493 4.628963 AAGATTGAAGCCAAAAAGCCAT 57.371 36.364 0.00 0.00 35.67 4.40
2835 21514 5.278266 CCATTGGTATGTTTCTGTTCGTGTT 60.278 40.000 0.00 0.00 0.00 3.32
2836 21515 5.821516 TTGGTATGTTTCTGTTCGTGTTT 57.178 34.783 0.00 0.00 0.00 2.83
2941 21656 6.762702 TGTACATTGAGATAACCACGACTA 57.237 37.500 0.00 0.00 0.00 2.59
3093 21809 2.043939 TCCTGGTCTAACAAGAGGGCTA 59.956 50.000 0.00 0.00 0.00 3.93
3170 21886 5.491982 TGCAACACAAAATAAACAAACCCT 58.508 33.333 0.00 0.00 0.00 4.34
3274 21990 4.189231 AGTACAAACACCATAAGATCGGC 58.811 43.478 0.00 0.00 0.00 5.54
3275 21991 3.350219 ACAAACACCATAAGATCGGCT 57.650 42.857 0.00 0.00 0.00 5.52
3510 22237 9.086336 GAACACAATCTTGTTGAATTTCTTCAA 57.914 29.630 0.00 0.00 46.53 2.69
3598 22325 8.966868 TCCTTATGTATTTTCCAGGATCAAAAC 58.033 33.333 0.00 0.00 0.00 2.43
3704 22431 8.380099 AGTTGTATGACATGGTAAACCTCTTTA 58.620 33.333 0.00 0.00 36.82 1.85
3710 22437 8.842358 TGACATGGTAAACCTCTTTAACTTAG 57.158 34.615 0.00 0.00 31.61 2.18
3711 22438 8.653191 TGACATGGTAAACCTCTTTAACTTAGA 58.347 33.333 0.00 0.00 31.61 2.10
3854 22581 3.119316 AGTTACGACTGGATCTGAGCAAG 60.119 47.826 0.00 0.00 33.99 4.01
3859 22586 2.203126 GGATCTGAGCAAGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
3963 22690 3.267812 AGAAGATTTTCTCATGGAGCCCA 59.732 43.478 0.00 0.00 39.46 5.36
4264 22991 8.545420 GTCAAACTTTCGTTGACTTCTTACATA 58.455 33.333 9.47 0.00 32.91 2.29
4267 22994 9.490379 AAACTTTCGTTGACTTCTTACATATCT 57.510 29.630 0.00 0.00 32.65 1.98
4269 22996 7.760340 ACTTTCGTTGACTTCTTACATATCTCC 59.240 37.037 0.00 0.00 0.00 3.71
4270 22997 7.406031 TTCGTTGACTTCTTACATATCTCCT 57.594 36.000 0.00 0.00 0.00 3.69
4271 22998 6.796426 TCGTTGACTTCTTACATATCTCCTG 58.204 40.000 0.00 0.00 0.00 3.86
4374 23101 7.718334 TGTCTGATTTGATGTCTACTTAGGA 57.282 36.000 0.00 0.00 0.00 2.94
4444 23171 4.567159 GCCAACCGTTCTAGTAAGAGAATG 59.433 45.833 0.00 0.00 40.66 2.67
4447 23174 6.387465 CAACCGTTCTAGTAAGAGAATGTGA 58.613 40.000 5.03 0.00 39.76 3.58
4464 23191 6.332635 AGAATGTGATCCATAACCCCATTCTA 59.667 38.462 9.53 0.00 42.94 2.10
4616 23360 3.819368 TGCATGTCCTCTTTCTGTTGAA 58.181 40.909 0.00 0.00 0.00 2.69
4646 23390 5.335897 GCAATAAGTCATGGAGAAAGTGCAA 60.336 40.000 0.00 0.00 31.22 4.08
4691 23435 7.011482 GTCTTACTAAACTGCTAATGGGTGATG 59.989 40.741 0.00 0.00 0.00 3.07
4692 23436 4.526970 ACTAAACTGCTAATGGGTGATGG 58.473 43.478 0.00 0.00 0.00 3.51
4693 23437 3.456380 AAACTGCTAATGGGTGATGGT 57.544 42.857 0.00 0.00 0.00 3.55
4694 23438 2.425143 ACTGCTAATGGGTGATGGTG 57.575 50.000 0.00 0.00 0.00 4.17
4695 23439 1.915489 ACTGCTAATGGGTGATGGTGA 59.085 47.619 0.00 0.00 0.00 4.02
4696 23440 2.308570 ACTGCTAATGGGTGATGGTGAA 59.691 45.455 0.00 0.00 0.00 3.18
4697 23441 2.947652 CTGCTAATGGGTGATGGTGAAG 59.052 50.000 0.00 0.00 0.00 3.02
4698 23442 2.301346 GCTAATGGGTGATGGTGAAGG 58.699 52.381 0.00 0.00 0.00 3.46
4699 23443 2.301346 CTAATGGGTGATGGTGAAGGC 58.699 52.381 0.00 0.00 0.00 4.35
4700 23444 0.409092 AATGGGTGATGGTGAAGGCA 59.591 50.000 0.00 0.00 0.00 4.75
4701 23445 0.033796 ATGGGTGATGGTGAAGGCAG 60.034 55.000 0.00 0.00 0.00 4.85
4702 23446 1.380302 GGGTGATGGTGAAGGCAGT 59.620 57.895 0.00 0.00 0.00 4.40
4703 23447 0.962356 GGGTGATGGTGAAGGCAGTG 60.962 60.000 0.00 0.00 0.00 3.66
4704 23448 0.962356 GGTGATGGTGAAGGCAGTGG 60.962 60.000 0.00 0.00 0.00 4.00
4705 23449 1.303561 TGATGGTGAAGGCAGTGGC 60.304 57.895 9.02 9.02 40.13 5.01
4706 23450 2.360350 ATGGTGAAGGCAGTGGCG 60.360 61.111 11.51 0.00 42.47 5.69
4707 23451 3.925630 ATGGTGAAGGCAGTGGCGG 62.926 63.158 11.51 0.00 42.47 6.13
4708 23452 4.329545 GGTGAAGGCAGTGGCGGA 62.330 66.667 11.51 0.00 42.47 5.54
4709 23453 2.743928 GTGAAGGCAGTGGCGGAG 60.744 66.667 11.51 0.00 42.47 4.63
4728 23472 1.685148 GCTTGGGCTGAAATCTAGGG 58.315 55.000 0.00 0.00 35.22 3.53
4729 23473 1.752084 GCTTGGGCTGAAATCTAGGGG 60.752 57.143 0.00 0.00 35.22 4.79
4730 23474 0.926293 TTGGGCTGAAATCTAGGGGG 59.074 55.000 0.00 0.00 0.00 5.40
4745 23489 4.224609 GGGGGCAATGGGCTAGGG 62.225 72.222 0.00 0.00 44.01 3.53
4746 23490 4.224609 GGGGCAATGGGCTAGGGG 62.225 72.222 0.00 0.00 44.01 4.79
4747 23491 4.224609 GGGCAATGGGCTAGGGGG 62.225 72.222 0.00 0.00 44.01 5.40
4769 23513 5.122519 GGGGGCAAACAATATGTATTTTGG 58.877 41.667 0.00 0.00 0.00 3.28
4770 23514 5.122519 GGGGCAAACAATATGTATTTTGGG 58.877 41.667 0.00 0.00 0.00 4.12
4771 23515 4.574421 GGGCAAACAATATGTATTTTGGGC 59.426 41.667 0.00 0.00 0.00 5.36
4772 23516 5.427378 GGCAAACAATATGTATTTTGGGCT 58.573 37.500 0.00 0.00 0.00 5.19
4773 23517 5.294060 GGCAAACAATATGTATTTTGGGCTG 59.706 40.000 0.00 0.00 0.00 4.85
4774 23518 6.105333 GCAAACAATATGTATTTTGGGCTGA 58.895 36.000 0.00 0.00 0.00 4.26
4775 23519 6.762661 GCAAACAATATGTATTTTGGGCTGAT 59.237 34.615 0.00 0.00 0.00 2.90
4776 23520 7.280652 GCAAACAATATGTATTTTGGGCTGATT 59.719 33.333 0.00 0.00 0.00 2.57
4777 23521 9.165035 CAAACAATATGTATTTTGGGCTGATTT 57.835 29.630 1.27 0.00 0.00 2.17
4778 23522 9.737844 AAACAATATGTATTTTGGGCTGATTTT 57.262 25.926 1.27 0.00 0.00 1.82
4779 23523 8.721019 ACAATATGTATTTTGGGCTGATTTTG 57.279 30.769 1.27 0.00 0.00 2.44
4780 23524 7.280652 ACAATATGTATTTTGGGCTGATTTTGC 59.719 33.333 1.27 0.00 0.00 3.68
4781 23525 4.888326 TGTATTTTGGGCTGATTTTGCT 57.112 36.364 0.00 0.00 0.00 3.91
4782 23526 5.226194 TGTATTTTGGGCTGATTTTGCTT 57.774 34.783 0.00 0.00 0.00 3.91
4783 23527 4.996122 TGTATTTTGGGCTGATTTTGCTTG 59.004 37.500 0.00 0.00 0.00 4.01
4784 23528 3.834489 TTTTGGGCTGATTTTGCTTGA 57.166 38.095 0.00 0.00 0.00 3.02
4785 23529 3.389925 TTTGGGCTGATTTTGCTTGAG 57.610 42.857 0.00 0.00 0.00 3.02
4786 23530 2.291209 TGGGCTGATTTTGCTTGAGA 57.709 45.000 0.00 0.00 0.00 3.27
4787 23531 2.811410 TGGGCTGATTTTGCTTGAGAT 58.189 42.857 0.00 0.00 0.00 2.75
4788 23532 3.966979 TGGGCTGATTTTGCTTGAGATA 58.033 40.909 0.00 0.00 0.00 1.98
4789 23533 4.539726 TGGGCTGATTTTGCTTGAGATAT 58.460 39.130 0.00 0.00 0.00 1.63
4790 23534 4.340097 TGGGCTGATTTTGCTTGAGATATG 59.660 41.667 0.00 0.00 0.00 1.78
4791 23535 4.261909 GGGCTGATTTTGCTTGAGATATGG 60.262 45.833 0.00 0.00 0.00 2.74
4792 23536 4.261909 GGCTGATTTTGCTTGAGATATGGG 60.262 45.833 0.00 0.00 0.00 4.00
4793 23537 4.795308 GCTGATTTTGCTTGAGATATGGGC 60.795 45.833 0.00 0.00 0.00 5.36
4794 23538 3.638160 TGATTTTGCTTGAGATATGGGCC 59.362 43.478 0.00 0.00 0.00 5.80
4795 23539 2.824689 TTTGCTTGAGATATGGGCCA 57.175 45.000 9.61 9.61 0.00 5.36
4796 23540 2.824689 TTGCTTGAGATATGGGCCAA 57.175 45.000 11.89 0.00 0.00 4.52
4797 23541 2.824689 TGCTTGAGATATGGGCCAAA 57.175 45.000 11.89 0.00 0.00 3.28
4798 23542 3.317455 TGCTTGAGATATGGGCCAAAT 57.683 42.857 11.89 0.00 0.00 2.32
4799 23543 4.451891 TGCTTGAGATATGGGCCAAATA 57.548 40.909 11.89 0.00 0.00 1.40
4800 23544 4.144297 TGCTTGAGATATGGGCCAAATAC 58.856 43.478 11.89 2.52 0.00 1.89
4801 23545 4.141181 TGCTTGAGATATGGGCCAAATACT 60.141 41.667 11.89 8.01 0.00 2.12
4802 23546 5.073008 TGCTTGAGATATGGGCCAAATACTA 59.927 40.000 11.89 0.00 0.00 1.82
4803 23547 6.003950 GCTTGAGATATGGGCCAAATACTAA 58.996 40.000 11.89 1.71 0.00 2.24
4804 23548 6.150140 GCTTGAGATATGGGCCAAATACTAAG 59.850 42.308 11.89 12.84 0.00 2.18
4805 23549 6.126863 TGAGATATGGGCCAAATACTAAGG 57.873 41.667 11.89 0.00 0.00 2.69
4806 23550 5.014123 TGAGATATGGGCCAAATACTAAGGG 59.986 44.000 11.89 0.00 0.00 3.95
4807 23551 4.292306 AGATATGGGCCAAATACTAAGGGG 59.708 45.833 11.89 0.00 0.00 4.79
4808 23552 1.688750 TGGGCCAAATACTAAGGGGT 58.311 50.000 2.13 0.00 0.00 4.95
4809 23553 2.861261 TGGGCCAAATACTAAGGGGTA 58.139 47.619 2.13 0.00 0.00 3.69
4810 23554 3.409159 TGGGCCAAATACTAAGGGGTAT 58.591 45.455 2.13 0.00 34.29 2.73
4811 23555 3.794971 TGGGCCAAATACTAAGGGGTATT 59.205 43.478 2.13 0.00 42.15 1.89
4812 23556 4.233287 TGGGCCAAATACTAAGGGGTATTT 59.767 41.667 2.13 6.74 46.72 1.40
4813 23557 4.831155 GGGCCAAATACTAAGGGGTATTTC 59.169 45.833 4.39 1.82 45.12 2.17
4814 23558 5.451354 GGCCAAATACTAAGGGGTATTTCA 58.549 41.667 0.00 0.00 45.12 2.69
4815 23559 5.535030 GGCCAAATACTAAGGGGTATTTCAG 59.465 44.000 0.00 6.17 45.12 3.02
4816 23560 6.362248 GCCAAATACTAAGGGGTATTTCAGA 58.638 40.000 8.92 0.00 45.12 3.27
4817 23561 6.831868 GCCAAATACTAAGGGGTATTTCAGAA 59.168 38.462 8.92 0.00 45.12 3.02
4818 23562 7.340999 GCCAAATACTAAGGGGTATTTCAGAAA 59.659 37.037 0.00 0.00 45.12 2.52
4819 23563 9.250246 CCAAATACTAAGGGGTATTTCAGAAAA 57.750 33.333 0.00 0.00 45.12 2.29
4836 23580 1.288188 AAAAATTCATGGGCTGGGGG 58.712 50.000 0.00 0.00 0.00 5.40
4865 23609 3.500635 AGGTTGGCCCCTGAGAAG 58.499 61.111 0.00 0.00 32.11 2.85
4866 23610 2.361737 GGTTGGCCCCTGAGAAGC 60.362 66.667 0.00 0.00 0.00 3.86
4867 23611 2.759795 GTTGGCCCCTGAGAAGCT 59.240 61.111 0.00 0.00 0.00 3.74
4868 23612 1.377856 GTTGGCCCCTGAGAAGCTC 60.378 63.158 0.00 0.00 0.00 4.09
4869 23613 2.606587 TTGGCCCCTGAGAAGCTCC 61.607 63.158 0.00 0.00 0.00 4.70
4870 23614 4.168291 GGCCCCTGAGAAGCTCCG 62.168 72.222 0.00 0.00 0.00 4.63
4871 23615 4.847444 GCCCCTGAGAAGCTCCGC 62.847 72.222 0.00 0.00 0.00 5.54
4872 23616 4.168291 CCCCTGAGAAGCTCCGCC 62.168 72.222 0.00 0.00 0.00 6.13
4873 23617 3.393970 CCCTGAGAAGCTCCGCCA 61.394 66.667 0.00 0.00 0.00 5.69
4874 23618 2.125350 CCTGAGAAGCTCCGCCAC 60.125 66.667 0.00 0.00 0.00 5.01
4875 23619 2.654079 CCTGAGAAGCTCCGCCACT 61.654 63.158 0.00 0.00 0.00 4.00
4876 23620 1.447489 CTGAGAAGCTCCGCCACTG 60.447 63.158 0.00 0.00 0.00 3.66
5063 23810 7.203218 GCCACTTTCTTTGTTTTTCTCTACAT 58.797 34.615 0.00 0.00 0.00 2.29
5188 23948 1.336125 GTCCTCCAAATGCTGCTATGC 59.664 52.381 0.00 0.00 0.00 3.14
5222 23982 5.106277 GGCAAAGTACTTTATGGTGTCCTTC 60.106 44.000 20.15 0.00 0.00 3.46
5223 23983 5.705905 GCAAAGTACTTTATGGTGTCCTTCT 59.294 40.000 20.15 0.00 0.00 2.85
5224 23984 6.206829 GCAAAGTACTTTATGGTGTCCTTCTT 59.793 38.462 20.15 0.00 0.00 2.52
5240 24000 5.707764 GTCCTTCTTTCTTATCTGCCACTTT 59.292 40.000 0.00 0.00 0.00 2.66
5241 24001 5.940470 TCCTTCTTTCTTATCTGCCACTTTC 59.060 40.000 0.00 0.00 0.00 2.62
5242 24002 5.942826 CCTTCTTTCTTATCTGCCACTTTCT 59.057 40.000 0.00 0.00 0.00 2.52
5243 24003 6.432472 CCTTCTTTCTTATCTGCCACTTTCTT 59.568 38.462 0.00 0.00 0.00 2.52
5244 24004 7.040132 CCTTCTTTCTTATCTGCCACTTTCTTT 60.040 37.037 0.00 0.00 0.00 2.52
5245 24005 7.823745 TCTTTCTTATCTGCCACTTTCTTTT 57.176 32.000 0.00 0.00 0.00 2.27
5246 24006 8.237811 TCTTTCTTATCTGCCACTTTCTTTTT 57.762 30.769 0.00 0.00 0.00 1.94
5281 24041 9.777297 ATTTATGTAAAAACAGTCAGCCAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
5285 24045 9.777297 ATGTAAAAACAGTCAGCCAAAATAATT 57.223 25.926 0.00 0.00 0.00 1.40
5291 24051 8.776376 AACAGTCAGCCAAAATAATTAATTGG 57.224 30.769 20.94 20.94 45.11 3.16
5292 24052 8.133024 ACAGTCAGCCAAAATAATTAATTGGA 57.867 30.769 26.00 11.10 45.14 3.53
5293 24053 8.592809 ACAGTCAGCCAAAATAATTAATTGGAA 58.407 29.630 26.00 13.92 45.14 3.53
5294 24054 9.603921 CAGTCAGCCAAAATAATTAATTGGAAT 57.396 29.630 26.00 15.93 45.14 3.01
5297 24057 9.612066 TCAGCCAAAATAATTAATTGGAATTCC 57.388 29.630 26.00 18.17 45.14 3.01
5298 24058 9.393512 CAGCCAAAATAATTAATTGGAATTCCA 57.606 29.630 23.63 23.63 45.14 3.53
5314 24074 8.648698 TGGAATTCCAATTAATCACTGAAGAA 57.351 30.769 25.13 0.00 44.35 2.52
5315 24075 9.087871 TGGAATTCCAATTAATCACTGAAGAAA 57.912 29.630 25.13 0.00 44.35 2.52
5363 24123 9.539194 AAATCCAAGTCTTAAATGAAAGGATCT 57.461 29.630 0.00 0.00 32.53 2.75
5364 24124 7.928307 TCCAAGTCTTAAATGAAAGGATCTG 57.072 36.000 0.00 0.00 0.00 2.90
5365 24125 6.886459 TCCAAGTCTTAAATGAAAGGATCTGG 59.114 38.462 0.00 0.00 0.00 3.86
5366 24126 6.660949 CCAAGTCTTAAATGAAAGGATCTGGT 59.339 38.462 0.00 0.00 0.00 4.00
5367 24127 7.177392 CCAAGTCTTAAATGAAAGGATCTGGTT 59.823 37.037 0.00 0.00 0.00 3.67
5368 24128 7.693969 AGTCTTAAATGAAAGGATCTGGTTG 57.306 36.000 0.00 0.00 0.00 3.77
5369 24129 6.660949 AGTCTTAAATGAAAGGATCTGGTTGG 59.339 38.462 0.00 0.00 0.00 3.77
5370 24130 6.659242 GTCTTAAATGAAAGGATCTGGTTGGA 59.341 38.462 0.00 0.00 0.00 3.53
5371 24131 7.176690 GTCTTAAATGAAAGGATCTGGTTGGAA 59.823 37.037 0.00 0.00 0.00 3.53
5372 24132 7.895429 TCTTAAATGAAAGGATCTGGTTGGAAT 59.105 33.333 0.00 0.00 0.00 3.01
5373 24133 6.535963 AAATGAAAGGATCTGGTTGGAATC 57.464 37.500 0.00 0.00 0.00 2.52
5374 24134 3.609853 TGAAAGGATCTGGTTGGAATCG 58.390 45.455 0.00 0.00 0.00 3.34
5375 24135 3.009033 TGAAAGGATCTGGTTGGAATCGT 59.991 43.478 0.00 0.00 0.00 3.73
5376 24136 4.224147 TGAAAGGATCTGGTTGGAATCGTA 59.776 41.667 0.00 0.00 0.00 3.43
5377 24137 4.837093 AAGGATCTGGTTGGAATCGTAA 57.163 40.909 0.00 0.00 0.00 3.18
5378 24138 4.837093 AGGATCTGGTTGGAATCGTAAA 57.163 40.909 0.00 0.00 0.00 2.01
5379 24139 4.770795 AGGATCTGGTTGGAATCGTAAAG 58.229 43.478 0.00 0.00 0.00 1.85
5380 24140 4.225267 AGGATCTGGTTGGAATCGTAAAGT 59.775 41.667 0.00 0.00 0.00 2.66
5381 24141 4.332819 GGATCTGGTTGGAATCGTAAAGTG 59.667 45.833 0.00 0.00 0.00 3.16
5382 24142 4.345859 TCTGGTTGGAATCGTAAAGTGT 57.654 40.909 0.00 0.00 0.00 3.55
5383 24143 4.062293 TCTGGTTGGAATCGTAAAGTGTG 58.938 43.478 0.00 0.00 0.00 3.82
5384 24144 3.142951 TGGTTGGAATCGTAAAGTGTGG 58.857 45.455 0.00 0.00 0.00 4.17
5385 24145 3.143728 GGTTGGAATCGTAAAGTGTGGT 58.856 45.455 0.00 0.00 0.00 4.16
5386 24146 4.202336 TGGTTGGAATCGTAAAGTGTGGTA 60.202 41.667 0.00 0.00 0.00 3.25
5387 24147 4.390909 GGTTGGAATCGTAAAGTGTGGTAG 59.609 45.833 0.00 0.00 0.00 3.18
5388 24148 5.232463 GTTGGAATCGTAAAGTGTGGTAGA 58.768 41.667 0.00 0.00 0.00 2.59
5389 24149 5.471556 TGGAATCGTAAAGTGTGGTAGAA 57.528 39.130 0.00 0.00 0.00 2.10
5390 24150 5.856156 TGGAATCGTAAAGTGTGGTAGAAA 58.144 37.500 0.00 0.00 0.00 2.52
5391 24151 5.929992 TGGAATCGTAAAGTGTGGTAGAAAG 59.070 40.000 0.00 0.00 0.00 2.62
5392 24152 6.161381 GGAATCGTAAAGTGTGGTAGAAAGA 58.839 40.000 0.00 0.00 0.00 2.52
5393 24153 6.647895 GGAATCGTAAAGTGTGGTAGAAAGAA 59.352 38.462 0.00 0.00 0.00 2.52
5394 24154 7.359849 GGAATCGTAAAGTGTGGTAGAAAGAAC 60.360 40.741 0.00 0.00 0.00 3.01
5395 24155 6.152932 TCGTAAAGTGTGGTAGAAAGAACT 57.847 37.500 0.00 0.00 0.00 3.01
5396 24156 7.275888 TCGTAAAGTGTGGTAGAAAGAACTA 57.724 36.000 0.00 0.00 0.00 2.24
5397 24157 7.141363 TCGTAAAGTGTGGTAGAAAGAACTAC 58.859 38.462 0.00 0.00 41.13 2.73
5398 24158 6.919662 CGTAAAGTGTGGTAGAAAGAACTACA 59.080 38.462 0.00 0.00 42.91 2.74
5399 24159 7.597743 CGTAAAGTGTGGTAGAAAGAACTACAT 59.402 37.037 0.00 0.00 42.91 2.29
5400 24160 9.918630 GTAAAGTGTGGTAGAAAGAACTACATA 57.081 33.333 0.00 0.00 42.91 2.29
5404 24164 9.476928 AGTGTGGTAGAAAGAACTACATATAGT 57.523 33.333 0.00 0.00 43.91 2.12
5430 24190 8.937634 TTTTTCTACGACACTTTAGACTCTTT 57.062 30.769 0.00 0.00 0.00 2.52
5431 24191 8.571461 TTTTCTACGACACTTTAGACTCTTTC 57.429 34.615 0.00 0.00 0.00 2.62
5432 24192 7.507733 TTCTACGACACTTTAGACTCTTTCT 57.492 36.000 0.00 0.00 38.51 2.52
5433 24193 8.613060 TTCTACGACACTTTAGACTCTTTCTA 57.387 34.615 0.00 0.00 35.55 2.10
5434 24194 8.789825 TCTACGACACTTTAGACTCTTTCTAT 57.210 34.615 0.00 0.00 36.65 1.98
5435 24195 9.228949 TCTACGACACTTTAGACTCTTTCTATT 57.771 33.333 0.00 0.00 36.65 1.73
5530 24290 8.899427 TTTTTCATTGCATCCACTTAATTTCA 57.101 26.923 0.00 0.00 0.00 2.69
5531 24291 8.899427 TTTTCATTGCATCCACTTAATTTCAA 57.101 26.923 0.00 0.00 0.00 2.69
5532 24292 9.504708 TTTTCATTGCATCCACTTAATTTCAAT 57.495 25.926 0.00 0.00 0.00 2.57
5533 24293 8.706492 TTCATTGCATCCACTTAATTTCAATC 57.294 30.769 0.00 0.00 0.00 2.67
5534 24294 7.838884 TCATTGCATCCACTTAATTTCAATCA 58.161 30.769 0.00 0.00 0.00 2.57
5535 24295 7.977293 TCATTGCATCCACTTAATTTCAATCAG 59.023 33.333 0.00 0.00 0.00 2.90
5536 24296 6.211587 TGCATCCACTTAATTTCAATCAGG 57.788 37.500 0.00 0.00 0.00 3.86
5537 24297 5.716228 TGCATCCACTTAATTTCAATCAGGT 59.284 36.000 0.00 0.00 0.00 4.00
5538 24298 6.127647 TGCATCCACTTAATTTCAATCAGGTC 60.128 38.462 0.00 0.00 0.00 3.85
5539 24299 6.127647 GCATCCACTTAATTTCAATCAGGTCA 60.128 38.462 0.00 0.00 0.00 4.02
5540 24300 7.577426 GCATCCACTTAATTTCAATCAGGTCAA 60.577 37.037 0.00 0.00 0.00 3.18
5541 24301 7.831691 TCCACTTAATTTCAATCAGGTCAAA 57.168 32.000 0.00 0.00 0.00 2.69
5542 24302 8.243961 TCCACTTAATTTCAATCAGGTCAAAA 57.756 30.769 0.00 0.00 0.00 2.44
5543 24303 8.869109 TCCACTTAATTTCAATCAGGTCAAAAT 58.131 29.630 0.00 0.00 0.00 1.82
5574 24334 9.971922 AAAATCTAAGACAATTCTTGACCAAAG 57.028 29.630 0.00 0.00 42.41 2.77
5575 24335 8.924511 AATCTAAGACAATTCTTGACCAAAGA 57.075 30.769 0.00 0.00 42.41 2.52
5586 24346 6.579666 TCTTGACCAAAGAATCCATGAAAG 57.420 37.500 0.00 0.00 42.09 2.62
5587 24347 6.306199 TCTTGACCAAAGAATCCATGAAAGA 58.694 36.000 0.00 0.00 42.09 2.52
5732 24492 0.318441 TTCCTGGAGAACGTGAGCAG 59.682 55.000 0.00 0.00 0.00 4.24
5742 24502 2.025969 CGTGAGCAGGTGTGAGCAG 61.026 63.158 0.00 0.00 0.00 4.24
5866 24626 2.444895 ACCTCCAGCTCCGATCCC 60.445 66.667 0.00 0.00 0.00 3.85
5886 24646 0.179134 GTCAAGATGCTCGCGTACCT 60.179 55.000 5.77 0.00 0.00 3.08
6072 24832 1.229951 ATGGCACCTTCCCTCCTCA 60.230 57.895 0.00 0.00 0.00 3.86
6195 24955 1.464376 CGAGACGGTGGCCATAGGAT 61.464 60.000 9.72 0.00 0.00 3.24
6225 24985 0.391661 GTCGATGGAGGAAGCAGCAA 60.392 55.000 0.00 0.00 0.00 3.91
6287 25047 2.508663 GCCGTCAAGCTACCGTCC 60.509 66.667 0.00 0.00 0.00 4.79
6331 25092 0.323999 TGGCTCTGAACCCGCTACTA 60.324 55.000 0.00 0.00 0.00 1.82
6374 25135 5.052481 TCGAATCTGTGATAAAGATGCTGG 58.948 41.667 0.00 0.00 34.59 4.85
6381 25142 4.105217 TGTGATAAAGATGCTGGGGATCAT 59.895 41.667 0.00 0.00 0.00 2.45
6403 25164 1.003476 GCTTTGGTTGGCCCCAATG 60.003 57.895 13.57 15.73 43.77 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.521681 CCTTCCTCCCGTCAATCGC 60.522 63.158 0.00 0.00 38.35 4.58
42 6736 9.981460 ACCTCTCTTTGATTTATGGAAAACTAT 57.019 29.630 0.00 0.00 0.00 2.12
50 6744 6.648192 AGAGTGACCTCTCTTTGATTTATGG 58.352 40.000 0.00 0.00 45.08 2.74
82 6776 5.701224 AGTGACCTTTGTCTCCCATAAAAA 58.299 37.500 0.00 0.00 42.28 1.94
87 6781 2.625639 AGAGTGACCTTTGTCTCCCAT 58.374 47.619 0.00 0.00 42.28 4.00
92 6786 5.871396 TTGACTAAGAGTGACCTTTGTCT 57.129 39.130 19.64 0.00 43.92 3.41
93 6787 5.050023 GCTTTGACTAAGAGTGACCTTTGTC 60.050 44.000 15.53 15.53 43.88 3.18
94 6788 4.816925 GCTTTGACTAAGAGTGACCTTTGT 59.183 41.667 0.49 0.00 35.80 2.83
129 6823 0.768221 TCTGTGACTGCCCCCTTCTT 60.768 55.000 0.00 0.00 0.00 2.52
138 6832 0.389166 CCGAGTCCTTCTGTGACTGC 60.389 60.000 0.00 0.00 42.94 4.40
139 6833 1.068194 GTCCGAGTCCTTCTGTGACTG 60.068 57.143 0.00 0.00 42.94 3.51
145 6839 0.108898 CTGCAGTCCGAGTCCTTCTG 60.109 60.000 5.25 0.00 0.00 3.02
152 6846 2.259818 CTTCGCTGCAGTCCGAGT 59.740 61.111 16.64 0.00 34.68 4.18
154 6848 2.987282 TTTGCTTCGCTGCAGTCCGA 62.987 55.000 16.64 13.90 44.27 4.55
174 6868 1.190643 GGAACTCTGCTCCTACTGCT 58.809 55.000 0.00 0.00 0.00 4.24
182 6876 1.818642 ACTTGCATGGAACTCTGCTC 58.181 50.000 0.00 0.00 38.25 4.26
193 6887 0.731514 CGCTGCAGGAAACTTGCATG 60.732 55.000 17.12 0.00 41.41 4.06
223 6917 2.554344 CCTTGGATTTTGAACGGAGGGA 60.554 50.000 0.00 0.00 0.00 4.20
226 6920 1.818674 CCCCTTGGATTTTGAACGGAG 59.181 52.381 0.00 0.00 0.00 4.63
230 6924 3.414269 TCGTACCCCTTGGATTTTGAAC 58.586 45.455 0.00 0.00 34.81 3.18
280 7067 1.777199 CGCCAACGGTTACGAAGAC 59.223 57.895 9.17 0.00 44.60 3.01
358 7166 1.680651 CCCTTTGTATTGGCGGGCA 60.681 57.895 0.00 0.00 0.00 5.36
370 7178 1.672356 CTGGAGTCCACGCCCTTTG 60.672 63.158 8.12 0.00 34.71 2.77
375 7183 4.083862 GGGTCTGGAGTCCACGCC 62.084 72.222 8.12 12.91 36.28 5.68
386 7194 1.477295 GTTTCCCTCTACTCGGGTCTG 59.523 57.143 0.00 0.00 42.56 3.51
388 7196 0.822811 GGTTTCCCTCTACTCGGGTC 59.177 60.000 0.00 0.00 42.56 4.46
485 7301 2.887568 CCAAGGCTAGCGCTCACG 60.888 66.667 16.34 4.83 44.07 4.35
490 7306 3.589881 CATGGCCAAGGCTAGCGC 61.590 66.667 10.96 0.00 41.60 5.92
516 7332 1.091771 CAGCGGATGGGCAGTAGTTG 61.092 60.000 0.00 0.00 34.64 3.16
541 7357 2.806621 GTTACCGGCGTCGTGGAC 60.807 66.667 9.28 0.00 33.95 4.02
542 7358 4.403137 CGTTACCGGCGTCGTGGA 62.403 66.667 9.28 0.00 33.95 4.02
555 7371 1.588082 GTTCACGGGAGCCTCGTTA 59.412 57.895 0.00 0.00 38.94 3.18
577 7393 1.841302 ATGCTGCAACCTTCGAGGGA 61.841 55.000 22.01 0.00 40.58 4.20
589 7405 2.432456 GTCGTCGTGGATGCTGCA 60.432 61.111 4.13 4.13 0.00 4.41
592 7408 4.796231 GGCGTCGTCGTGGATGCT 62.796 66.667 17.58 0.00 45.94 3.79
609 7425 3.055719 ATGGGAGCGTTGTTGCCG 61.056 61.111 0.00 0.00 34.65 5.69
610 7426 1.523154 TTCATGGGAGCGTTGTTGCC 61.523 55.000 0.00 0.00 34.65 4.52
611 7427 0.387239 GTTCATGGGAGCGTTGTTGC 60.387 55.000 0.00 0.00 0.00 4.17
612 7428 0.110238 CGTTCATGGGAGCGTTGTTG 60.110 55.000 0.00 0.00 42.01 3.33
613 7429 0.250124 TCGTTCATGGGAGCGTTGTT 60.250 50.000 0.00 0.00 46.27 2.83
614 7430 0.036388 ATCGTTCATGGGAGCGTTGT 60.036 50.000 0.00 0.00 46.27 3.32
615 7431 1.062587 GAATCGTTCATGGGAGCGTTG 59.937 52.381 0.00 0.00 46.27 4.10
616 7432 1.369625 GAATCGTTCATGGGAGCGTT 58.630 50.000 0.00 0.00 46.27 4.84
617 7433 0.462047 GGAATCGTTCATGGGAGCGT 60.462 55.000 0.00 0.00 46.27 5.07
619 7435 0.181350 AGGGAATCGTTCATGGGAGC 59.819 55.000 0.00 0.00 0.00 4.70
620 7436 1.539065 CGAGGGAATCGTTCATGGGAG 60.539 57.143 0.00 0.00 46.62 4.30
642 7458 1.026718 CAAGCAAAGAGGGGCTACCG 61.027 60.000 0.00 0.00 46.96 4.02
653 7469 0.666577 GCTGGAGCAAGCAAGCAAAG 60.667 55.000 8.81 0.00 43.01 2.77
654 7470 1.364901 GCTGGAGCAAGCAAGCAAA 59.635 52.632 8.81 0.00 43.01 3.68
655 7471 2.911484 CGCTGGAGCAAGCAAGCAA 61.911 57.895 12.63 0.00 43.73 3.91
656 7472 3.359523 CGCTGGAGCAAGCAAGCA 61.360 61.111 12.63 0.00 43.73 3.91
657 7473 2.412037 AAACGCTGGAGCAAGCAAGC 62.412 55.000 6.83 0.00 43.73 4.01
658 7474 0.662374 CAAACGCTGGAGCAAGCAAG 60.662 55.000 6.83 0.00 43.73 4.01
659 7475 1.359833 CAAACGCTGGAGCAAGCAA 59.640 52.632 6.83 0.00 43.73 3.91
670 7486 1.128188 AGGAGGAGGGAACAAACGCT 61.128 55.000 0.00 0.00 35.82 5.07
676 7492 1.978580 GTCAGAAAGGAGGAGGGAACA 59.021 52.381 0.00 0.00 0.00 3.18
687 7504 3.418047 ACGTAATTTGGGGTCAGAAAGG 58.582 45.455 0.00 0.00 0.00 3.11
700 7517 5.163893 CGTGTCTGCATTAGGAACGTAATTT 60.164 40.000 0.00 0.00 33.66 1.82
701 7518 4.328983 CGTGTCTGCATTAGGAACGTAATT 59.671 41.667 0.00 0.00 33.66 1.40
710 7527 2.672961 TCCTTCGTGTCTGCATTAGG 57.327 50.000 0.00 0.00 0.00 2.69
721 7561 2.208431 GCCTTCATGAGATCCTTCGTG 58.792 52.381 0.00 0.00 35.80 4.35
729 7569 0.250640 GATGGCCGCCTTCATGAGAT 60.251 55.000 18.20 0.00 0.00 2.75
746 7586 0.529992 GAATCGAGGTTTCCGGCGAT 60.530 55.000 9.30 6.58 43.51 4.58
782 7622 1.280133 TCATGAAGTTCAGGGGAGCAG 59.720 52.381 16.88 0.00 0.00 4.24
816 7656 3.062639 AGAAGCGAGCGTATGTGAAATTG 59.937 43.478 0.00 0.00 0.00 2.32
861 7703 9.702726 CGTCACAAATAGACCAATTACAATTAG 57.297 33.333 0.00 0.00 32.41 1.73
868 7710 5.553123 ACACCGTCACAAATAGACCAATTA 58.447 37.500 0.00 0.00 32.41 1.40
869 7711 4.394729 ACACCGTCACAAATAGACCAATT 58.605 39.130 0.00 0.00 32.41 2.32
870 7712 4.015872 ACACCGTCACAAATAGACCAAT 57.984 40.909 0.00 0.00 32.41 3.16
886 7737 3.252458 CCTTCTCCCAAAAGTAAACACCG 59.748 47.826 0.00 0.00 0.00 4.94
896 7747 6.043938 ACTCTGTACAATACCTTCTCCCAAAA 59.956 38.462 0.00 0.00 0.00 2.44
900 7751 4.957327 AGACTCTGTACAATACCTTCTCCC 59.043 45.833 0.00 0.00 0.00 4.30
903 7755 6.952358 TGGTAAGACTCTGTACAATACCTTCT 59.048 38.462 0.00 0.00 33.97 2.85
936 18515 3.733344 AATCGCCGATGGGTCACCG 62.733 63.158 0.00 0.00 40.75 4.94
1020 18599 3.012518 CTCCTCCACCAAATACTTGCTG 58.987 50.000 0.00 0.00 0.00 4.41
1098 18680 0.170561 TTAAGCACGGAGAGAGCGAC 59.829 55.000 0.00 0.00 0.00 5.19
1104 18686 2.076863 CCTGGTTTTAAGCACGGAGAG 58.923 52.381 0.00 0.00 32.29 3.20
1110 18692 0.603065 CAGCCCCTGGTTTTAAGCAC 59.397 55.000 0.00 0.00 32.29 4.40
1122 18705 1.380785 CATTGACATGGCAGCCCCT 60.381 57.895 9.64 0.00 0.00 4.79
1344 18951 2.127646 GTGTGCATGTGCGTGTCG 60.128 61.111 0.00 0.00 45.83 4.35
1455 19085 7.047891 TGATCCCATAAGTCATGTTCTAACAC 58.952 38.462 0.00 0.00 42.51 3.32
1485 19115 1.068588 TGCAGCGTCCTGTGATATACC 59.931 52.381 0.00 0.00 41.26 2.73
1488 19118 1.541889 CCATGCAGCGTCCTGTGATAT 60.542 52.381 0.00 0.00 41.26 1.63
1627 19257 1.970640 AGGACATATACATCTGCGCCA 59.029 47.619 4.18 0.00 0.00 5.69
1810 19979 9.634021 GGAATAATCCAGAGAATTCTAACCTTT 57.366 33.333 8.25 3.15 45.79 3.11
2007 20190 6.433847 TCCAAGAGGAACTGAATGAAGTTA 57.566 37.500 0.00 0.00 42.23 2.24
2110 20299 1.312815 AGCTTTATGAGAATGCGGCC 58.687 50.000 0.00 0.00 0.00 6.13
2203 20394 8.889717 CAATTTCCTGTTAGTATAATCAACGGT 58.110 33.333 0.00 0.00 0.00 4.83
2230 20421 4.788679 ACAACTTTACTAGGCACAAGGTT 58.211 39.130 0.00 0.00 0.00 3.50
2261 20452 9.199982 GCTAAATGATATGGATTGTTTTGATGG 57.800 33.333 0.00 0.00 0.00 3.51
2361 20553 0.599991 AGACTTGCAATCGTGTCGCA 60.600 50.000 0.00 0.00 34.92 5.10
2434 20628 7.490962 ACGAACTCAATAACTGACAATCAAA 57.509 32.000 0.00 0.00 0.00 2.69
2593 21270 5.246037 ATTGCCATTCAAAAGGGAACCAGA 61.246 41.667 0.00 0.00 45.68 3.86
2814 21493 5.124138 ACAAACACGAACAGAAACATACCAA 59.876 36.000 0.00 0.00 0.00 3.67
2941 21656 7.783119 GGACACCTAAGATTACCCCAATAAATT 59.217 37.037 0.00 0.00 0.00 1.82
3037 21753 5.628797 TCAGCATGATCACATTACCCTTA 57.371 39.130 0.00 0.00 42.56 2.69
3068 21784 4.290942 CCCTCTTGTTAGACCAGGACTAT 58.709 47.826 0.00 0.00 0.00 2.12
3093 21809 7.867921 TGGGTTCATTATGTCTATTGTTAGGT 58.132 34.615 0.00 0.00 0.00 3.08
3214 21930 9.530633 GAAGTAGAAGAACTCTTTTACTCAACA 57.469 33.333 18.06 0.00 46.61 3.33
3274 21990 6.071334 TGGGTTTGTACTCATTGTCTAGAGAG 60.071 42.308 0.00 0.00 35.83 3.20
3275 21991 5.778241 TGGGTTTGTACTCATTGTCTAGAGA 59.222 40.000 0.00 0.00 35.83 3.10
3435 22153 4.574013 GCTAGCTCTTTGACATGCTTATGT 59.426 41.667 7.70 0.00 37.02 2.29
3598 22325 3.447742 ACTTTTTCTTCTTTGGCAAGCG 58.552 40.909 0.00 0.00 0.00 4.68
3704 22431 9.544579 ACCACCTAAACTATAAGAGTCTAAGTT 57.455 33.333 8.80 8.80 37.44 2.66
3854 22581 8.573035 TCAAATTATATTCATTTTAGACGGGCC 58.427 33.333 0.00 0.00 0.00 5.80
3963 22690 0.996583 TTCCTTGTCGCCCCCTAAAT 59.003 50.000 0.00 0.00 0.00 1.40
4264 22991 7.124052 ACTTCAATTTCATGGATTCAGGAGAT 58.876 34.615 0.00 0.00 35.01 2.75
4267 22994 8.827832 ATAACTTCAATTTCATGGATTCAGGA 57.172 30.769 0.00 0.00 31.27 3.86
4381 23108 7.104290 TGTACGGTCAATTTGGATATGTTGTA 58.896 34.615 0.00 0.00 0.00 2.41
4401 23128 5.694816 TGGCTTGTTCAATTTACATGTACG 58.305 37.500 4.68 0.00 0.00 3.67
4444 23171 5.163195 ACTGTAGAATGGGGTTATGGATCAC 60.163 44.000 0.00 0.00 0.00 3.06
4447 23174 8.933522 ATATACTGTAGAATGGGGTTATGGAT 57.066 34.615 0.00 0.00 0.00 3.41
4454 23181 8.017251 AGGAAGTAATATACTGTAGAATGGGGT 58.983 37.037 0.00 0.00 39.39 4.95
4464 23191 8.757982 TCTTTACGGAGGAAGTAATATACTGT 57.242 34.615 0.00 0.00 39.39 3.55
4477 23204 9.205513 AGGTAAGTAATATTTCTTTACGGAGGA 57.794 33.333 11.94 0.00 35.25 3.71
4510 23252 6.224584 ACAGGTAGAAAACTGTCTAAGCTTC 58.775 40.000 0.00 0.00 44.08 3.86
4596 23340 4.217118 ACATTCAACAGAAAGAGGACATGC 59.783 41.667 0.00 0.00 0.00 4.06
4616 23360 5.894298 TCTCCATGACTTATTGCCTACAT 57.106 39.130 0.00 0.00 0.00 2.29
4646 23390 0.039437 CTCCTGTTCGCGTACAGTGT 60.039 55.000 34.05 0.00 43.17 3.55
4691 23435 4.329545 TCCGCCACTGCCTTCACC 62.330 66.667 0.00 0.00 0.00 4.02
4692 23436 2.743928 CTCCGCCACTGCCTTCAC 60.744 66.667 0.00 0.00 0.00 3.18
4693 23437 4.704833 GCTCCGCCACTGCCTTCA 62.705 66.667 0.00 0.00 0.00 3.02
4694 23438 3.909086 AAGCTCCGCCACTGCCTTC 62.909 63.158 0.00 0.00 0.00 3.46
4695 23439 3.958860 AAGCTCCGCCACTGCCTT 61.959 61.111 0.00 0.00 0.00 4.35
4696 23440 4.711949 CAAGCTCCGCCACTGCCT 62.712 66.667 0.00 0.00 0.00 4.75
4709 23453 1.685148 CCCTAGATTTCAGCCCAAGC 58.315 55.000 0.00 0.00 40.32 4.01
4710 23454 1.133668 CCCCCTAGATTTCAGCCCAAG 60.134 57.143 0.00 0.00 0.00 3.61
4711 23455 0.926293 CCCCCTAGATTTCAGCCCAA 59.074 55.000 0.00 0.00 0.00 4.12
4712 23456 2.632831 CCCCCTAGATTTCAGCCCA 58.367 57.895 0.00 0.00 0.00 5.36
4728 23472 4.224609 CCCTAGCCCATTGCCCCC 62.225 72.222 0.00 0.00 42.71 5.40
4729 23473 4.224609 CCCCTAGCCCATTGCCCC 62.225 72.222 0.00 0.00 42.71 5.80
4730 23474 4.224609 CCCCCTAGCCCATTGCCC 62.225 72.222 0.00 0.00 42.71 5.36
4746 23490 5.122519 CCAAAATACATATTGTTTGCCCCC 58.877 41.667 0.00 0.00 0.00 5.40
4747 23491 5.122519 CCCAAAATACATATTGTTTGCCCC 58.877 41.667 0.00 0.00 0.00 5.80
4748 23492 4.574421 GCCCAAAATACATATTGTTTGCCC 59.426 41.667 0.00 0.00 0.00 5.36
4749 23493 5.294060 CAGCCCAAAATACATATTGTTTGCC 59.706 40.000 0.00 0.00 0.00 4.52
4750 23494 6.105333 TCAGCCCAAAATACATATTGTTTGC 58.895 36.000 0.00 0.00 0.00 3.68
4751 23495 8.721019 AATCAGCCCAAAATACATATTGTTTG 57.279 30.769 0.00 0.00 0.00 2.93
4752 23496 9.737844 AAAATCAGCCCAAAATACATATTGTTT 57.262 25.926 0.00 0.00 0.00 2.83
4753 23497 9.165035 CAAAATCAGCCCAAAATACATATTGTT 57.835 29.630 0.00 0.00 0.00 2.83
4754 23498 7.280652 GCAAAATCAGCCCAAAATACATATTGT 59.719 33.333 0.00 0.00 0.00 2.71
4755 23499 7.496591 AGCAAAATCAGCCCAAAATACATATTG 59.503 33.333 0.00 0.00 0.00 1.90
4756 23500 7.567458 AGCAAAATCAGCCCAAAATACATATT 58.433 30.769 0.00 0.00 0.00 1.28
4757 23501 7.128234 AGCAAAATCAGCCCAAAATACATAT 57.872 32.000 0.00 0.00 0.00 1.78
4758 23502 6.543430 AGCAAAATCAGCCCAAAATACATA 57.457 33.333 0.00 0.00 0.00 2.29
4759 23503 5.425196 AGCAAAATCAGCCCAAAATACAT 57.575 34.783 0.00 0.00 0.00 2.29
4760 23504 4.888326 AGCAAAATCAGCCCAAAATACA 57.112 36.364 0.00 0.00 0.00 2.29
4761 23505 5.237048 TCAAGCAAAATCAGCCCAAAATAC 58.763 37.500 0.00 0.00 0.00 1.89
4762 23506 5.245751 TCTCAAGCAAAATCAGCCCAAAATA 59.754 36.000 0.00 0.00 0.00 1.40
4763 23507 4.040706 TCTCAAGCAAAATCAGCCCAAAAT 59.959 37.500 0.00 0.00 0.00 1.82
4764 23508 3.387374 TCTCAAGCAAAATCAGCCCAAAA 59.613 39.130 0.00 0.00 0.00 2.44
4765 23509 2.964464 TCTCAAGCAAAATCAGCCCAAA 59.036 40.909 0.00 0.00 0.00 3.28
4766 23510 2.596346 TCTCAAGCAAAATCAGCCCAA 58.404 42.857 0.00 0.00 0.00 4.12
4767 23511 2.291209 TCTCAAGCAAAATCAGCCCA 57.709 45.000 0.00 0.00 0.00 5.36
4768 23512 4.261909 CCATATCTCAAGCAAAATCAGCCC 60.262 45.833 0.00 0.00 0.00 5.19
4769 23513 4.261909 CCCATATCTCAAGCAAAATCAGCC 60.262 45.833 0.00 0.00 0.00 4.85
4770 23514 4.795308 GCCCATATCTCAAGCAAAATCAGC 60.795 45.833 0.00 0.00 0.00 4.26
4771 23515 4.261909 GGCCCATATCTCAAGCAAAATCAG 60.262 45.833 0.00 0.00 0.00 2.90
4772 23516 3.638160 GGCCCATATCTCAAGCAAAATCA 59.362 43.478 0.00 0.00 0.00 2.57
4773 23517 3.638160 TGGCCCATATCTCAAGCAAAATC 59.362 43.478 0.00 0.00 0.00 2.17
4774 23518 3.645434 TGGCCCATATCTCAAGCAAAAT 58.355 40.909 0.00 0.00 0.00 1.82
4775 23519 3.098774 TGGCCCATATCTCAAGCAAAA 57.901 42.857 0.00 0.00 0.00 2.44
4776 23520 2.824689 TGGCCCATATCTCAAGCAAA 57.175 45.000 0.00 0.00 0.00 3.68
4777 23521 2.824689 TTGGCCCATATCTCAAGCAA 57.175 45.000 0.00 0.00 0.00 3.91
4778 23522 2.824689 TTTGGCCCATATCTCAAGCA 57.175 45.000 0.00 0.00 0.00 3.91
4779 23523 4.401925 AGTATTTGGCCCATATCTCAAGC 58.598 43.478 0.00 0.00 0.00 4.01
4780 23524 6.656693 CCTTAGTATTTGGCCCATATCTCAAG 59.343 42.308 0.00 0.00 0.00 3.02
4781 23525 6.467194 CCCTTAGTATTTGGCCCATATCTCAA 60.467 42.308 0.00 0.00 0.00 3.02
4782 23526 5.014123 CCCTTAGTATTTGGCCCATATCTCA 59.986 44.000 0.00 0.00 0.00 3.27
4783 23527 5.501156 CCCTTAGTATTTGGCCCATATCTC 58.499 45.833 0.00 0.00 0.00 2.75
4784 23528 4.292306 CCCCTTAGTATTTGGCCCATATCT 59.708 45.833 0.00 0.00 0.00 1.98
4785 23529 4.044191 ACCCCTTAGTATTTGGCCCATATC 59.956 45.833 0.00 0.00 0.00 1.63
4786 23530 3.994384 ACCCCTTAGTATTTGGCCCATAT 59.006 43.478 0.00 0.00 0.00 1.78
4787 23531 3.409159 ACCCCTTAGTATTTGGCCCATA 58.591 45.455 0.00 0.00 0.00 2.74
4788 23532 2.223174 ACCCCTTAGTATTTGGCCCAT 58.777 47.619 0.00 0.00 0.00 4.00
4789 23533 1.688750 ACCCCTTAGTATTTGGCCCA 58.311 50.000 0.00 0.00 0.00 5.36
4790 23534 4.464652 AATACCCCTTAGTATTTGGCCC 57.535 45.455 0.00 0.00 39.38 5.80
4817 23561 1.288188 CCCCCAGCCCATGAATTTTT 58.712 50.000 0.00 0.00 0.00 1.94
4818 23562 3.010627 CCCCCAGCCCATGAATTTT 57.989 52.632 0.00 0.00 0.00 1.82
4819 23563 4.813907 CCCCCAGCCCATGAATTT 57.186 55.556 0.00 0.00 0.00 1.82
4848 23592 2.911926 GCTTCTCAGGGGCCAACCT 61.912 63.158 4.39 0.00 43.08 3.50
4849 23593 2.361737 GCTTCTCAGGGGCCAACC 60.362 66.667 4.39 0.00 39.11 3.77
4850 23594 1.377856 GAGCTTCTCAGGGGCCAAC 60.378 63.158 4.39 0.00 0.00 3.77
4851 23595 2.606587 GGAGCTTCTCAGGGGCCAA 61.607 63.158 4.39 0.00 31.08 4.52
4852 23596 3.011517 GGAGCTTCTCAGGGGCCA 61.012 66.667 4.39 0.00 31.08 5.36
4853 23597 4.168291 CGGAGCTTCTCAGGGGCC 62.168 72.222 0.00 0.00 31.08 5.80
4866 23610 2.046892 CTTCACCCAGTGGCGGAG 60.047 66.667 2.61 0.00 33.87 4.63
4867 23611 3.636231 CCTTCACCCAGTGGCGGA 61.636 66.667 2.61 0.00 33.87 5.54
4868 23612 3.953775 ACCTTCACCCAGTGGCGG 61.954 66.667 2.61 0.00 33.87 6.13
4869 23613 2.669569 CACCTTCACCCAGTGGCG 60.670 66.667 2.61 0.00 33.87 5.69
4870 23614 2.983725 AAGCACCTTCACCCAGTGGC 62.984 60.000 2.61 0.00 33.87 5.01
4871 23615 0.468029 AAAGCACCTTCACCCAGTGG 60.468 55.000 0.63 0.63 33.87 4.00
4872 23616 0.670162 CAAAGCACCTTCACCCAGTG 59.330 55.000 0.00 0.00 34.45 3.66
4873 23617 0.258774 ACAAAGCACCTTCACCCAGT 59.741 50.000 0.00 0.00 0.00 4.00
4874 23618 0.954452 GACAAAGCACCTTCACCCAG 59.046 55.000 0.00 0.00 0.00 4.45
4875 23619 0.257328 TGACAAAGCACCTTCACCCA 59.743 50.000 0.00 0.00 0.00 4.51
4876 23620 0.954452 CTGACAAAGCACCTTCACCC 59.046 55.000 0.00 0.00 0.00 4.61
5063 23810 2.551270 AGGCTTGTTCATACTCCTGGA 58.449 47.619 0.00 0.00 0.00 3.86
5157 23904 4.557496 GCATTTGGAGGACACTCAAAAGAC 60.557 45.833 3.94 0.00 46.83 3.01
5188 23948 3.059352 AGTACTTTGCCAGCCTACAAG 57.941 47.619 0.00 0.00 0.00 3.16
5255 24015 9.777297 ATTTTGGCTGACTGTTTTTACATAAAT 57.223 25.926 0.00 0.00 0.00 1.40
5259 24019 9.777297 AATTATTTTGGCTGACTGTTTTTACAT 57.223 25.926 0.00 0.00 0.00 2.29
5265 24025 9.218440 CCAATTAATTATTTTGGCTGACTGTTT 57.782 29.630 12.33 0.00 34.03 2.83
5266 24026 8.592809 TCCAATTAATTATTTTGGCTGACTGTT 58.407 29.630 17.15 0.00 39.79 3.16
5267 24027 8.133024 TCCAATTAATTATTTTGGCTGACTGT 57.867 30.769 17.15 0.00 39.79 3.55
5268 24028 9.603921 ATTCCAATTAATTATTTTGGCTGACTG 57.396 29.630 17.15 0.62 39.79 3.51
5271 24031 9.612066 GGAATTCCAATTAATTATTTTGGCTGA 57.388 29.630 20.04 9.75 39.79 4.26
5272 24032 9.393512 TGGAATTCCAATTAATTATTTTGGCTG 57.606 29.630 25.13 2.12 44.35 4.85
5289 24049 8.648698 TTCTTCAGTGATTAATTGGAATTCCA 57.351 30.769 23.63 23.63 45.94 3.53
5337 24097 9.539194 AGATCCTTTCATTTAAGACTTGGATTT 57.461 29.630 0.00 0.00 32.66 2.17
5338 24098 8.964772 CAGATCCTTTCATTTAAGACTTGGATT 58.035 33.333 0.00 0.00 32.66 3.01
5339 24099 7.559170 CCAGATCCTTTCATTTAAGACTTGGAT 59.441 37.037 0.00 0.00 34.87 3.41
5340 24100 6.886459 CCAGATCCTTTCATTTAAGACTTGGA 59.114 38.462 0.00 0.00 0.00 3.53
5341 24101 6.660949 ACCAGATCCTTTCATTTAAGACTTGG 59.339 38.462 0.00 0.00 0.00 3.61
5342 24102 7.693969 ACCAGATCCTTTCATTTAAGACTTG 57.306 36.000 0.00 0.00 0.00 3.16
5343 24103 7.177392 CCAACCAGATCCTTTCATTTAAGACTT 59.823 37.037 0.00 0.00 0.00 3.01
5344 24104 6.660949 CCAACCAGATCCTTTCATTTAAGACT 59.339 38.462 0.00 0.00 0.00 3.24
5345 24105 6.659242 TCCAACCAGATCCTTTCATTTAAGAC 59.341 38.462 0.00 0.00 0.00 3.01
5346 24106 6.789268 TCCAACCAGATCCTTTCATTTAAGA 58.211 36.000 0.00 0.00 0.00 2.10
5347 24107 7.466746 TTCCAACCAGATCCTTTCATTTAAG 57.533 36.000 0.00 0.00 0.00 1.85
5348 24108 7.148086 CGATTCCAACCAGATCCTTTCATTTAA 60.148 37.037 0.00 0.00 0.00 1.52
5349 24109 6.318648 CGATTCCAACCAGATCCTTTCATTTA 59.681 38.462 0.00 0.00 0.00 1.40
5350 24110 5.126061 CGATTCCAACCAGATCCTTTCATTT 59.874 40.000 0.00 0.00 0.00 2.32
5351 24111 4.641989 CGATTCCAACCAGATCCTTTCATT 59.358 41.667 0.00 0.00 0.00 2.57
5352 24112 4.202441 CGATTCCAACCAGATCCTTTCAT 58.798 43.478 0.00 0.00 0.00 2.57
5353 24113 3.009033 ACGATTCCAACCAGATCCTTTCA 59.991 43.478 0.00 0.00 0.00 2.69
5354 24114 3.610911 ACGATTCCAACCAGATCCTTTC 58.389 45.455 0.00 0.00 0.00 2.62
5355 24115 3.721087 ACGATTCCAACCAGATCCTTT 57.279 42.857 0.00 0.00 0.00 3.11
5356 24116 4.837093 TTACGATTCCAACCAGATCCTT 57.163 40.909 0.00 0.00 0.00 3.36
5357 24117 4.225267 ACTTTACGATTCCAACCAGATCCT 59.775 41.667 0.00 0.00 0.00 3.24
5358 24118 4.332819 CACTTTACGATTCCAACCAGATCC 59.667 45.833 0.00 0.00 0.00 3.36
5359 24119 4.935808 ACACTTTACGATTCCAACCAGATC 59.064 41.667 0.00 0.00 0.00 2.75
5360 24120 4.695455 CACACTTTACGATTCCAACCAGAT 59.305 41.667 0.00 0.00 0.00 2.90
5361 24121 4.062293 CACACTTTACGATTCCAACCAGA 58.938 43.478 0.00 0.00 0.00 3.86
5362 24122 3.188460 CCACACTTTACGATTCCAACCAG 59.812 47.826 0.00 0.00 0.00 4.00
5363 24123 3.142951 CCACACTTTACGATTCCAACCA 58.857 45.455 0.00 0.00 0.00 3.67
5364 24124 3.143728 ACCACACTTTACGATTCCAACC 58.856 45.455 0.00 0.00 0.00 3.77
5365 24125 5.232463 TCTACCACACTTTACGATTCCAAC 58.768 41.667 0.00 0.00 0.00 3.77
5366 24126 5.471556 TCTACCACACTTTACGATTCCAA 57.528 39.130 0.00 0.00 0.00 3.53
5367 24127 5.471556 TTCTACCACACTTTACGATTCCA 57.528 39.130 0.00 0.00 0.00 3.53
5368 24128 6.161381 TCTTTCTACCACACTTTACGATTCC 58.839 40.000 0.00 0.00 0.00 3.01
5369 24129 7.384387 AGTTCTTTCTACCACACTTTACGATTC 59.616 37.037 0.00 0.00 0.00 2.52
5370 24130 7.215085 AGTTCTTTCTACCACACTTTACGATT 58.785 34.615 0.00 0.00 0.00 3.34
5371 24131 6.756221 AGTTCTTTCTACCACACTTTACGAT 58.244 36.000 0.00 0.00 0.00 3.73
5372 24132 6.152932 AGTTCTTTCTACCACACTTTACGA 57.847 37.500 0.00 0.00 0.00 3.43
5373 24133 6.919662 TGTAGTTCTTTCTACCACACTTTACG 59.080 38.462 0.00 0.00 39.39 3.18
5374 24134 8.828688 ATGTAGTTCTTTCTACCACACTTTAC 57.171 34.615 0.00 0.00 39.39 2.01
5378 24138 9.476928 ACTATATGTAGTTCTTTCTACCACACT 57.523 33.333 0.00 0.00 37.94 3.55
5405 24165 8.937634 AAAGAGTCTAAAGTGTCGTAGAAAAA 57.062 30.769 0.00 0.00 39.69 1.94
5406 24166 8.411683 AGAAAGAGTCTAAAGTGTCGTAGAAAA 58.588 33.333 0.00 0.00 33.44 2.29
5407 24167 7.938715 AGAAAGAGTCTAAAGTGTCGTAGAAA 58.061 34.615 0.00 0.00 33.44 2.52
5408 24168 7.507733 AGAAAGAGTCTAAAGTGTCGTAGAA 57.492 36.000 0.00 0.00 33.44 2.10
5409 24169 8.789825 ATAGAAAGAGTCTAAAGTGTCGTAGA 57.210 34.615 0.00 0.00 42.24 2.59
5505 24265 8.899427 TGAAATTAAGTGGATGCAATGAAAAA 57.101 26.923 0.00 0.00 0.00 1.94
5506 24266 8.899427 TTGAAATTAAGTGGATGCAATGAAAA 57.101 26.923 0.00 0.00 0.00 2.29
5507 24267 9.153721 GATTGAAATTAAGTGGATGCAATGAAA 57.846 29.630 0.00 0.00 0.00 2.69
5508 24268 8.312564 TGATTGAAATTAAGTGGATGCAATGAA 58.687 29.630 0.00 0.00 0.00 2.57
5509 24269 7.838884 TGATTGAAATTAAGTGGATGCAATGA 58.161 30.769 0.00 0.00 0.00 2.57
5510 24270 7.223971 CCTGATTGAAATTAAGTGGATGCAATG 59.776 37.037 0.00 0.00 0.00 2.82
5511 24271 7.093201 ACCTGATTGAAATTAAGTGGATGCAAT 60.093 33.333 0.00 0.00 0.00 3.56
5512 24272 6.211184 ACCTGATTGAAATTAAGTGGATGCAA 59.789 34.615 0.00 0.00 0.00 4.08
5513 24273 5.716228 ACCTGATTGAAATTAAGTGGATGCA 59.284 36.000 0.00 0.00 0.00 3.96
5514 24274 6.127647 TGACCTGATTGAAATTAAGTGGATGC 60.128 38.462 0.00 0.00 0.00 3.91
5515 24275 7.395190 TGACCTGATTGAAATTAAGTGGATG 57.605 36.000 0.00 0.00 0.00 3.51
5516 24276 8.421249 TTTGACCTGATTGAAATTAAGTGGAT 57.579 30.769 0.00 0.00 0.00 3.41
5517 24277 7.831691 TTTGACCTGATTGAAATTAAGTGGA 57.168 32.000 0.00 0.00 0.00 4.02
5563 24323 6.306199 TCTTTCATGGATTCTTTGGTCAAGA 58.694 36.000 0.00 0.00 39.99 3.02
5564 24324 6.208204 ACTCTTTCATGGATTCTTTGGTCAAG 59.792 38.462 0.00 0.00 0.00 3.02
5565 24325 6.070656 ACTCTTTCATGGATTCTTTGGTCAA 58.929 36.000 0.00 0.00 0.00 3.18
5566 24326 5.634118 ACTCTTTCATGGATTCTTTGGTCA 58.366 37.500 0.00 0.00 0.00 4.02
5567 24327 7.872113 ATACTCTTTCATGGATTCTTTGGTC 57.128 36.000 0.00 0.00 0.00 4.02
5568 24328 7.775561 GGTATACTCTTTCATGGATTCTTTGGT 59.224 37.037 2.25 0.00 0.00 3.67
5569 24329 7.995488 AGGTATACTCTTTCATGGATTCTTTGG 59.005 37.037 2.25 0.00 0.00 3.28
5570 24330 8.970859 AGGTATACTCTTTCATGGATTCTTTG 57.029 34.615 2.25 0.00 0.00 2.77
5573 24333 8.361139 CGTTAGGTATACTCTTTCATGGATTCT 58.639 37.037 2.25 0.00 0.00 2.40
5574 24334 8.358148 TCGTTAGGTATACTCTTTCATGGATTC 58.642 37.037 2.25 0.00 0.00 2.52
5575 24335 8.246430 TCGTTAGGTATACTCTTTCATGGATT 57.754 34.615 2.25 0.00 0.00 3.01
5576 24336 7.834881 TCGTTAGGTATACTCTTTCATGGAT 57.165 36.000 2.25 0.00 0.00 3.41
5577 24337 7.834881 ATCGTTAGGTATACTCTTTCATGGA 57.165 36.000 2.25 0.00 0.00 3.41
5578 24338 9.790389 GATATCGTTAGGTATACTCTTTCATGG 57.210 37.037 2.25 0.00 0.00 3.66
5582 24342 9.623350 GGTTGATATCGTTAGGTATACTCTTTC 57.377 37.037 2.25 0.00 0.00 2.62
5583 24343 8.583296 GGGTTGATATCGTTAGGTATACTCTTT 58.417 37.037 2.25 0.00 0.00 2.52
5584 24344 7.727186 TGGGTTGATATCGTTAGGTATACTCTT 59.273 37.037 2.25 0.00 0.00 2.85
5585 24345 7.236529 TGGGTTGATATCGTTAGGTATACTCT 58.763 38.462 2.25 1.22 0.00 3.24
5586 24346 7.458409 TGGGTTGATATCGTTAGGTATACTC 57.542 40.000 2.25 0.00 0.00 2.59
5587 24347 7.727186 TCTTGGGTTGATATCGTTAGGTATACT 59.273 37.037 2.25 0.00 0.00 2.12
5732 24492 2.740055 CGCCTCACTGCTCACACC 60.740 66.667 0.00 0.00 0.00 4.16
5762 24522 4.135153 CTCGACCGTCAGGCCTGG 62.135 72.222 32.23 19.37 42.76 4.45
5763 24523 4.135153 CCTCGACCGTCAGGCCTG 62.135 72.222 27.87 27.87 42.76 4.85
5839 24599 4.020617 CTGGAGGTGGCTTGCCGA 62.021 66.667 7.18 0.00 0.00 5.54
5866 24626 1.472276 GGTACGCGAGCATCTTGACG 61.472 60.000 15.93 0.00 0.00 4.35
6195 24955 3.770040 CATCGACGCCACCCCTCA 61.770 66.667 0.00 0.00 0.00 3.86
6257 25017 0.527113 TGACGGCGTCGGAAAATCTA 59.473 50.000 31.90 11.00 41.39 1.98
6287 25047 1.795768 TGTGCCTCGTTAGCTTCAAG 58.204 50.000 0.00 0.00 0.00 3.02
6337 25098 0.105039 ATTCGAATCTCCACCGGCTC 59.895 55.000 4.39 0.00 0.00 4.70
6374 25135 1.753073 CAACCAAAGCCAGATGATCCC 59.247 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.