Multiple sequence alignment - TraesCS3A01G126000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G126000 chr3A 100.000 3421 0 0 1 3421 101775593 101779013 0.000000e+00 6318
1 TraesCS3A01G126000 chr3A 97.256 3061 77 3 216 3269 297824491 297821431 0.000000e+00 5180
2 TraesCS3A01G126000 chr3A 94.598 2129 95 9 1 2119 732953741 732951623 0.000000e+00 3277
3 TraesCS3A01G126000 chr5D 97.097 2136 59 3 2 2136 4661299 4663432 0.000000e+00 3598
4 TraesCS3A01G126000 chr5D 95.556 315 13 1 2955 3269 4664229 4664542 1.420000e-138 503
5 TraesCS3A01G126000 chr5D 94.006 317 18 1 2955 3271 558116253 558115938 2.390000e-131 479
6 TraesCS3A01G126000 chr2A 95.469 2141 91 6 1 2136 547851550 547853689 0.000000e+00 3411
7 TraesCS3A01G126000 chr2A 94.455 2128 97 9 3 2119 671216852 671218969 0.000000e+00 3256
8 TraesCS3A01G126000 chr2A 92.055 793 52 4 2172 2954 547853693 547854484 0.000000e+00 1105
9 TraesCS3A01G126000 chr2A 93.949 314 17 2 2955 3268 547854449 547854760 1.110000e-129 473
10 TraesCS3A01G126000 chr2A 97.386 153 2 1 3269 3421 93272015 93272165 3.390000e-65 259
11 TraesCS3A01G126000 chr2A 96.774 155 3 1 3267 3421 382693091 382693243 1.220000e-64 257
12 TraesCS3A01G126000 chr1A 94.648 2130 91 12 1 2119 38345760 38343643 0.000000e+00 3280
13 TraesCS3A01G126000 chr1A 91.371 788 62 4 2172 2954 38343444 38342658 0.000000e+00 1074
14 TraesCS3A01G126000 chr1A 92.920 565 31 4 58 613 576696418 576695854 0.000000e+00 813
15 TraesCS3A01G126000 chr1A 96.732 153 3 1 3269 3421 174922411 174922261 1.580000e-63 254
16 TraesCS3A01G126000 chr1A 96.732 153 3 1 3269 3421 281981468 281981618 1.580000e-63 254
17 TraesCS3A01G126000 chr1A 96.732 153 3 1 3269 3421 461162977 461163127 1.580000e-63 254
18 TraesCS3A01G126000 chr1A 96.732 153 3 1 3269 3421 500724481 500724631 1.580000e-63 254
19 TraesCS3A01G126000 chr1A 95.597 159 4 2 3263 3421 94993301 94993146 5.670000e-63 252
20 TraesCS3A01G126000 chr2D 95.067 2088 88 7 58 2136 16920688 16918607 0.000000e+00 3271
21 TraesCS3A01G126000 chr2D 95.733 1992 82 3 144 2133 221291612 221293602 0.000000e+00 3205
22 TraesCS3A01G126000 chr2D 92.317 794 45 7 2172 2954 16918603 16917815 0.000000e+00 1114
23 TraesCS3A01G126000 chr2D 92.229 785 58 3 2172 2954 221293609 221294392 0.000000e+00 1109
24 TraesCS3A01G126000 chr2D 91.097 775 63 5 2176 2948 21212531 21213301 0.000000e+00 1044
25 TraesCS3A01G126000 chr2D 93.949 314 18 1 2955 3268 221294357 221294669 1.110000e-129 473
26 TraesCS3A01G126000 chr4A 93.123 1614 79 17 523 2119 605879069 605880667 0.000000e+00 2337
27 TraesCS3A01G126000 chr4A 91.538 780 60 2 2176 2954 294601496 294602270 0.000000e+00 1070
28 TraesCS3A01G126000 chr7D 92.841 908 52 9 58 964 52492279 52493174 0.000000e+00 1304
29 TraesCS3A01G126000 chr5B 94.395 785 40 1 56 840 669731711 669732491 0.000000e+00 1203
30 TraesCS3A01G126000 chr7B 91.443 783 65 2 2172 2953 710130183 710129402 0.000000e+00 1074
31 TraesCS3A01G126000 chr7B 91.315 783 67 1 2172 2953 710107477 710106695 0.000000e+00 1068
32 TraesCS3A01G126000 chr6A 93.968 315 18 1 2955 3269 193175624 193175311 3.090000e-130 475
33 TraesCS3A01G126000 chr6A 96.732 153 3 1 3269 3421 169659722 169659872 1.580000e-63 254
34 TraesCS3A01G126000 chr6D 93.930 313 18 1 2956 3268 435842122 435841811 4.000000e-129 472
35 TraesCS3A01G126000 chr7A 93.910 312 18 1 2955 3266 128302108 128302418 1.440000e-128 470
36 TraesCS3A01G126000 chr7A 97.386 153 4 0 3269 3421 180605297 180605449 9.420000e-66 261
37 TraesCS3A01G126000 chr3B 93.910 312 18 1 2955 3266 342731840 342731530 1.440000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G126000 chr3A 101775593 101779013 3420 False 6318.000000 6318 100.000000 1 3421 1 chr3A.!!$F1 3420
1 TraesCS3A01G126000 chr3A 297821431 297824491 3060 True 5180.000000 5180 97.256000 216 3269 1 chr3A.!!$R1 3053
2 TraesCS3A01G126000 chr3A 732951623 732953741 2118 True 3277.000000 3277 94.598000 1 2119 1 chr3A.!!$R2 2118
3 TraesCS3A01G126000 chr5D 4661299 4664542 3243 False 2050.500000 3598 96.326500 2 3269 2 chr5D.!!$F1 3267
4 TraesCS3A01G126000 chr2A 671216852 671218969 2117 False 3256.000000 3256 94.455000 3 2119 1 chr2A.!!$F3 2116
5 TraesCS3A01G126000 chr2A 547851550 547854760 3210 False 1663.000000 3411 93.824333 1 3268 3 chr2A.!!$F4 3267
6 TraesCS3A01G126000 chr1A 38342658 38345760 3102 True 2177.000000 3280 93.009500 1 2954 2 chr1A.!!$R4 2953
7 TraesCS3A01G126000 chr1A 576695854 576696418 564 True 813.000000 813 92.920000 58 613 1 chr1A.!!$R3 555
8 TraesCS3A01G126000 chr2D 16917815 16920688 2873 True 2192.500000 3271 93.692000 58 2954 2 chr2D.!!$R1 2896
9 TraesCS3A01G126000 chr2D 221291612 221294669 3057 False 1595.666667 3205 93.970333 144 3268 3 chr2D.!!$F2 3124
10 TraesCS3A01G126000 chr2D 21212531 21213301 770 False 1044.000000 1044 91.097000 2176 2948 1 chr2D.!!$F1 772
11 TraesCS3A01G126000 chr4A 605879069 605880667 1598 False 2337.000000 2337 93.123000 523 2119 1 chr4A.!!$F2 1596
12 TraesCS3A01G126000 chr4A 294601496 294602270 774 False 1070.000000 1070 91.538000 2176 2954 1 chr4A.!!$F1 778
13 TraesCS3A01G126000 chr7D 52492279 52493174 895 False 1304.000000 1304 92.841000 58 964 1 chr7D.!!$F1 906
14 TraesCS3A01G126000 chr5B 669731711 669732491 780 False 1203.000000 1203 94.395000 56 840 1 chr5B.!!$F1 784
15 TraesCS3A01G126000 chr7B 710129402 710130183 781 True 1074.000000 1074 91.443000 2172 2953 1 chr7B.!!$R2 781
16 TraesCS3A01G126000 chr7B 710106695 710107477 782 True 1068.000000 1068 91.315000 2172 2953 1 chr7B.!!$R1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 885 0.107508 AGTGCAAGGGATGATGTCGG 60.108 55.0 0.00 0.0 0.00 4.79 F
1526 1571 1.089920 CACCTGCTATGGCTTCACAC 58.910 55.0 1.68 0.0 39.59 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 1999 1.316651 GGAGGGAGCAGATTGAATGC 58.683 55.0 0.0 0.0 44.18 3.56 R
3354 3665 0.031716 CACATGGGGAGGGAGAGAGA 60.032 60.0 0.0 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
405 419 3.870419 CAGCTCATTGAGAAGTTAGGCTC 59.130 47.826 17.87 0.00 0.00 4.70
747 766 5.073311 TGTCTTCTACTGTATGACTTGGC 57.927 43.478 13.11 0.00 0.00 4.52
764 783 8.523915 TGACTTGGCATATCATACTTCAAAAT 57.476 30.769 0.00 0.00 0.00 1.82
863 885 0.107508 AGTGCAAGGGATGATGTCGG 60.108 55.000 0.00 0.00 0.00 4.79
1085 1119 7.121463 TGTTCAGGTACACACAACAGTAATTTT 59.879 33.333 0.00 0.00 0.00 1.82
1089 1123 8.779303 CAGGTACACACAACAGTAATTTTATCA 58.221 33.333 0.00 0.00 0.00 2.15
1101 1135 7.284489 ACAGTAATTTTATCAATACGGGTGCAT 59.716 33.333 0.00 0.00 0.00 3.96
1526 1571 1.089920 CACCTGCTATGGCTTCACAC 58.910 55.000 1.68 0.00 39.59 3.82
1558 1603 3.024547 CCTACTCAGTTCCTCCGATTGA 58.975 50.000 0.00 0.00 0.00 2.57
1691 1749 4.761235 ATGAGTTCAATGAGCACTTGTG 57.239 40.909 0.00 0.00 0.00 3.33
1939 1999 4.386867 TCTGCGGATAAGTTCAAGGTAG 57.613 45.455 0.00 0.00 0.00 3.18
1961 2021 0.537188 TTCAATCTGCTCCCTCCGAC 59.463 55.000 0.00 0.00 0.00 4.79
1975 2035 4.020543 CCCTCCGACCCAAATTAATTGAA 58.979 43.478 0.39 0.00 41.85 2.69
2051 2112 3.181445 TGAGGTGTGGTTCTATGTTTGCT 60.181 43.478 0.00 0.00 0.00 3.91
2430 2693 2.611518 CAAAGAACTAGCTCGACTGGG 58.388 52.381 0.00 0.00 0.00 4.45
2663 2973 7.230849 AGCACCATGAAGATTTAAATTGTCA 57.769 32.000 13.88 13.88 0.00 3.58
2691 3002 6.560253 AGTTTCTCGCTACAAACATTTCAT 57.440 33.333 0.00 0.00 35.33 2.57
2755 3066 5.893687 TGCAATTTCCTATTACGACGACTA 58.106 37.500 0.00 0.00 0.00 2.59
2893 3204 3.057876 GGAACAATATGCACCACGAAACA 60.058 43.478 0.00 0.00 0.00 2.83
2936 3247 2.297315 TGCCACAAATGTTTATCGCCAA 59.703 40.909 0.00 0.00 0.00 4.52
2972 3283 5.030295 GTCATCACAAATGTTTATCGCCAG 58.970 41.667 0.00 0.00 0.00 4.85
3269 3580 4.724279 AGACCCAAATCCTTGTAGTGTT 57.276 40.909 0.00 0.00 0.00 3.32
3270 3581 5.061721 AGACCCAAATCCTTGTAGTGTTT 57.938 39.130 0.00 0.00 0.00 2.83
3271 3582 5.070685 AGACCCAAATCCTTGTAGTGTTTC 58.929 41.667 0.00 0.00 0.00 2.78
3272 3583 5.061721 ACCCAAATCCTTGTAGTGTTTCT 57.938 39.130 0.00 0.00 0.00 2.52
3273 3584 6.043938 AGACCCAAATCCTTGTAGTGTTTCTA 59.956 38.462 0.00 0.00 0.00 2.10
3274 3585 6.790319 ACCCAAATCCTTGTAGTGTTTCTAT 58.210 36.000 0.00 0.00 0.00 1.98
3275 3586 6.884836 ACCCAAATCCTTGTAGTGTTTCTATC 59.115 38.462 0.00 0.00 0.00 2.08
3276 3587 6.037172 CCCAAATCCTTGTAGTGTTTCTATCG 59.963 42.308 0.00 0.00 0.00 2.92
3277 3588 6.456988 CCAAATCCTTGTAGTGTTTCTATCGC 60.457 42.308 0.00 0.00 0.00 4.58
3278 3589 3.766151 TCCTTGTAGTGTTTCTATCGCG 58.234 45.455 0.00 0.00 0.00 5.87
3279 3590 2.281762 CCTTGTAGTGTTTCTATCGCGC 59.718 50.000 0.00 0.00 0.00 6.86
3280 3591 2.640346 TGTAGTGTTTCTATCGCGCA 57.360 45.000 8.75 0.00 0.00 6.09
3281 3592 2.256174 TGTAGTGTTTCTATCGCGCAC 58.744 47.619 8.75 1.25 0.00 5.34
3282 3593 1.252015 GTAGTGTTTCTATCGCGCACG 59.748 52.381 8.75 0.00 42.01 5.34
3283 3594 1.295930 GTGTTTCTATCGCGCACGC 60.296 57.895 8.75 4.64 39.84 5.34
3284 3595 1.734837 TGTTTCTATCGCGCACGCA 60.735 52.632 16.04 2.79 42.06 5.24
3285 3596 1.295930 GTTTCTATCGCGCACGCAC 60.296 57.895 16.04 0.00 42.06 5.34
3286 3597 1.445410 TTTCTATCGCGCACGCACT 60.445 52.632 16.04 3.75 42.06 4.40
3287 3598 1.410737 TTTCTATCGCGCACGCACTC 61.411 55.000 16.04 0.00 42.06 3.51
3288 3599 3.323136 CTATCGCGCACGCACTCC 61.323 66.667 16.04 0.00 42.06 3.85
3289 3600 4.865761 TATCGCGCACGCACTCCC 62.866 66.667 16.04 0.00 42.06 4.30
3294 3605 2.434884 CGCACGCACTCCCTTGAT 60.435 61.111 0.00 0.00 0.00 2.57
3295 3606 2.456119 CGCACGCACTCCCTTGATC 61.456 63.158 0.00 0.00 0.00 2.92
3296 3607 1.078848 GCACGCACTCCCTTGATCT 60.079 57.895 0.00 0.00 0.00 2.75
3297 3608 1.086634 GCACGCACTCCCTTGATCTC 61.087 60.000 0.00 0.00 0.00 2.75
3298 3609 0.460987 CACGCACTCCCTTGATCTCC 60.461 60.000 0.00 0.00 0.00 3.71
3299 3610 1.144936 CGCACTCCCTTGATCTCCC 59.855 63.158 0.00 0.00 0.00 4.30
3300 3611 1.617018 CGCACTCCCTTGATCTCCCA 61.617 60.000 0.00 0.00 0.00 4.37
3301 3612 0.107459 GCACTCCCTTGATCTCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
3302 3613 0.543749 CACTCCCTTGATCTCCCACC 59.456 60.000 0.00 0.00 0.00 4.61
3303 3614 0.621862 ACTCCCTTGATCTCCCACCC 60.622 60.000 0.00 0.00 0.00 4.61
3304 3615 0.621571 CTCCCTTGATCTCCCACCCA 60.622 60.000 0.00 0.00 0.00 4.51
3305 3616 0.046242 TCCCTTGATCTCCCACCCAT 59.954 55.000 0.00 0.00 0.00 4.00
3306 3617 1.296832 TCCCTTGATCTCCCACCCATA 59.703 52.381 0.00 0.00 0.00 2.74
3307 3618 2.089408 TCCCTTGATCTCCCACCCATAT 60.089 50.000 0.00 0.00 0.00 1.78
3308 3619 3.145861 TCCCTTGATCTCCCACCCATATA 59.854 47.826 0.00 0.00 0.00 0.86
3309 3620 3.521126 CCCTTGATCTCCCACCCATATAG 59.479 52.174 0.00 0.00 0.00 1.31
3310 3621 4.171234 CCTTGATCTCCCACCCATATAGT 58.829 47.826 0.00 0.00 0.00 2.12
3311 3622 4.223923 CCTTGATCTCCCACCCATATAGTC 59.776 50.000 0.00 0.00 0.00 2.59
3312 3623 3.791320 TGATCTCCCACCCATATAGTCC 58.209 50.000 0.00 0.00 0.00 3.85
3313 3624 2.715763 TCTCCCACCCATATAGTCCC 57.284 55.000 0.00 0.00 0.00 4.46
3314 3625 1.151413 TCTCCCACCCATATAGTCCCC 59.849 57.143 0.00 0.00 0.00 4.81
3315 3626 1.152271 CTCCCACCCATATAGTCCCCT 59.848 57.143 0.00 0.00 0.00 4.79
3316 3627 1.151413 TCCCACCCATATAGTCCCCTC 59.849 57.143 0.00 0.00 0.00 4.30
3317 3628 1.132527 CCCACCCATATAGTCCCCTCA 60.133 57.143 0.00 0.00 0.00 3.86
3318 3629 1.978580 CCACCCATATAGTCCCCTCAC 59.021 57.143 0.00 0.00 0.00 3.51
3319 3630 1.618837 CACCCATATAGTCCCCTCACG 59.381 57.143 0.00 0.00 0.00 4.35
3320 3631 1.502039 ACCCATATAGTCCCCTCACGA 59.498 52.381 0.00 0.00 0.00 4.35
3321 3632 2.111972 ACCCATATAGTCCCCTCACGAT 59.888 50.000 0.00 0.00 0.00 3.73
3322 3633 2.761208 CCCATATAGTCCCCTCACGATC 59.239 54.545 0.00 0.00 0.00 3.69
3323 3634 3.564571 CCCATATAGTCCCCTCACGATCT 60.565 52.174 0.00 0.00 0.00 2.75
3324 3635 3.697045 CCATATAGTCCCCTCACGATCTC 59.303 52.174 0.00 0.00 0.00 2.75
3325 3636 1.898902 ATAGTCCCCTCACGATCTCG 58.101 55.000 0.00 0.00 46.33 4.04
3326 3637 0.835276 TAGTCCCCTCACGATCTCGA 59.165 55.000 6.60 0.00 43.02 4.04
3327 3638 0.748729 AGTCCCCTCACGATCTCGAC 60.749 60.000 6.60 0.00 43.02 4.20
3328 3639 1.818363 TCCCCTCACGATCTCGACG 60.818 63.158 6.60 0.00 43.02 5.12
3329 3640 2.716244 CCCTCACGATCTCGACGG 59.284 66.667 6.60 3.54 43.02 4.79
3330 3641 2.716244 CCTCACGATCTCGACGGG 59.284 66.667 6.60 0.00 43.02 5.28
3331 3642 1.818363 CCTCACGATCTCGACGGGA 60.818 63.158 0.00 0.00 43.02 5.14
3332 3643 1.167155 CCTCACGATCTCGACGGGAT 61.167 60.000 10.70 10.70 42.20 3.85
3333 3644 0.236187 CTCACGATCTCGACGGGATC 59.764 60.000 24.88 24.88 42.20 3.36
3334 3645 0.179054 TCACGATCTCGACGGGATCT 60.179 55.000 29.72 17.06 43.02 2.75
3335 3646 0.236187 CACGATCTCGACGGGATCTC 59.764 60.000 29.72 11.65 43.02 2.75
3336 3647 0.107081 ACGATCTCGACGGGATCTCT 59.893 55.000 29.72 15.48 43.02 3.10
3337 3648 0.793861 CGATCTCGACGGGATCTCTC 59.206 60.000 29.72 10.61 43.02 3.20
3338 3649 1.606994 CGATCTCGACGGGATCTCTCT 60.607 57.143 29.72 0.76 43.02 3.10
3339 3650 2.352912 CGATCTCGACGGGATCTCTCTA 60.353 54.545 29.72 0.00 43.02 2.43
3340 3651 3.677700 CGATCTCGACGGGATCTCTCTAT 60.678 52.174 29.72 0.00 43.02 1.98
3341 3652 3.322211 TCTCGACGGGATCTCTCTATC 57.678 52.381 0.00 0.00 0.00 2.08
3342 3653 2.633481 TCTCGACGGGATCTCTCTATCA 59.367 50.000 0.00 0.00 0.00 2.15
3343 3654 2.739913 CTCGACGGGATCTCTCTATCAC 59.260 54.545 0.00 0.00 0.00 3.06
3344 3655 2.104281 TCGACGGGATCTCTCTATCACA 59.896 50.000 0.00 0.00 0.00 3.58
3345 3656 2.879026 CGACGGGATCTCTCTATCACAA 59.121 50.000 0.00 0.00 0.00 3.33
3346 3657 3.315470 CGACGGGATCTCTCTATCACAAA 59.685 47.826 0.00 0.00 0.00 2.83
3347 3658 4.612943 GACGGGATCTCTCTATCACAAAC 58.387 47.826 0.00 0.00 0.00 2.93
3348 3659 4.023980 ACGGGATCTCTCTATCACAAACA 58.976 43.478 0.00 0.00 0.00 2.83
3349 3660 4.142138 ACGGGATCTCTCTATCACAAACAC 60.142 45.833 0.00 0.00 0.00 3.32
3350 3661 4.142160 CGGGATCTCTCTATCACAAACACA 60.142 45.833 0.00 0.00 0.00 3.72
3351 3662 5.112686 GGGATCTCTCTATCACAAACACAC 58.887 45.833 0.00 0.00 0.00 3.82
3352 3663 5.112686 GGATCTCTCTATCACAAACACACC 58.887 45.833 0.00 0.00 0.00 4.16
3353 3664 4.537135 TCTCTCTATCACAAACACACCC 57.463 45.455 0.00 0.00 0.00 4.61
3354 3665 4.160329 TCTCTCTATCACAAACACACCCT 58.840 43.478 0.00 0.00 0.00 4.34
3355 3666 4.220821 TCTCTCTATCACAAACACACCCTC 59.779 45.833 0.00 0.00 0.00 4.30
3356 3667 4.160329 TCTCTATCACAAACACACCCTCT 58.840 43.478 0.00 0.00 0.00 3.69
3357 3668 4.220821 TCTCTATCACAAACACACCCTCTC 59.779 45.833 0.00 0.00 0.00 3.20
3358 3669 4.160329 TCTATCACAAACACACCCTCTCT 58.840 43.478 0.00 0.00 0.00 3.10
3359 3670 2.910688 TCACAAACACACCCTCTCTC 57.089 50.000 0.00 0.00 0.00 3.20
3360 3671 2.398588 TCACAAACACACCCTCTCTCT 58.601 47.619 0.00 0.00 0.00 3.10
3361 3672 2.365617 TCACAAACACACCCTCTCTCTC 59.634 50.000 0.00 0.00 0.00 3.20
3362 3673 1.694696 ACAAACACACCCTCTCTCTCC 59.305 52.381 0.00 0.00 0.00 3.71
3363 3674 1.002544 CAAACACACCCTCTCTCTCCC 59.997 57.143 0.00 0.00 0.00 4.30
3364 3675 0.489567 AACACACCCTCTCTCTCCCT 59.510 55.000 0.00 0.00 0.00 4.20
3365 3676 0.040499 ACACACCCTCTCTCTCCCTC 59.960 60.000 0.00 0.00 0.00 4.30
3366 3677 0.686112 CACACCCTCTCTCTCCCTCC 60.686 65.000 0.00 0.00 0.00 4.30
3367 3678 1.075600 CACCCTCTCTCTCCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
3368 3679 2.329399 ACCCTCTCTCTCCCTCCCC 61.329 68.421 0.00 0.00 0.00 4.81
3369 3680 2.328589 CCCTCTCTCTCCCTCCCCA 61.329 68.421 0.00 0.00 0.00 4.96
3370 3681 1.673928 CCCTCTCTCTCCCTCCCCAT 61.674 65.000 0.00 0.00 0.00 4.00
3371 3682 0.471591 CCTCTCTCTCCCTCCCCATG 60.472 65.000 0.00 0.00 0.00 3.66
3372 3683 0.264359 CTCTCTCTCCCTCCCCATGT 59.736 60.000 0.00 0.00 0.00 3.21
3373 3684 0.031716 TCTCTCTCCCTCCCCATGTG 60.032 60.000 0.00 0.00 0.00 3.21
3374 3685 0.326048 CTCTCTCCCTCCCCATGTGT 60.326 60.000 0.00 0.00 0.00 3.72
3375 3686 0.325671 TCTCTCCCTCCCCATGTGTC 60.326 60.000 0.00 0.00 0.00 3.67
3376 3687 1.306997 TCTCCCTCCCCATGTGTCC 60.307 63.158 0.00 0.00 0.00 4.02
3377 3688 1.616327 CTCCCTCCCCATGTGTCCA 60.616 63.158 0.00 0.00 0.00 4.02
3378 3689 0.990282 CTCCCTCCCCATGTGTCCAT 60.990 60.000 0.00 0.00 0.00 3.41
3379 3690 1.228228 CCCTCCCCATGTGTCCATG 59.772 63.158 0.00 0.00 46.65 3.66
3380 3691 1.454479 CCTCCCCATGTGTCCATGC 60.454 63.158 0.00 0.00 45.90 4.06
3381 3692 1.454479 CTCCCCATGTGTCCATGCC 60.454 63.158 0.00 0.00 45.90 4.40
3382 3693 2.214122 CTCCCCATGTGTCCATGCCA 62.214 60.000 0.00 0.00 45.90 4.92
3383 3694 1.075822 CCCCATGTGTCCATGCCAT 60.076 57.895 0.00 0.00 45.90 4.40
3384 3695 1.111116 CCCCATGTGTCCATGCCATC 61.111 60.000 0.00 0.00 45.90 3.51
3385 3696 1.111116 CCCATGTGTCCATGCCATCC 61.111 60.000 0.00 0.00 45.90 3.51
3386 3697 0.396001 CCATGTGTCCATGCCATCCA 60.396 55.000 0.00 0.00 45.90 3.41
3387 3698 1.699730 CATGTGTCCATGCCATCCAT 58.300 50.000 0.00 0.00 41.88 3.41
3394 3705 2.422303 CATGCCATCCATGTGTCCC 58.578 57.895 0.00 0.00 45.05 4.46
3395 3706 0.106369 CATGCCATCCATGTGTCCCT 60.106 55.000 0.00 0.00 45.05 4.20
3396 3707 0.184451 ATGCCATCCATGTGTCCCTC 59.816 55.000 0.00 0.00 31.48 4.30
3397 3708 1.524621 GCCATCCATGTGTCCCTCG 60.525 63.158 0.00 0.00 0.00 4.63
3398 3709 1.524621 CCATCCATGTGTCCCTCGC 60.525 63.158 0.00 0.00 0.00 5.03
3399 3710 1.884464 CATCCATGTGTCCCTCGCG 60.884 63.158 0.00 0.00 0.00 5.87
3400 3711 2.058001 ATCCATGTGTCCCTCGCGA 61.058 57.895 9.26 9.26 0.00 5.87
3401 3712 2.298158 ATCCATGTGTCCCTCGCGAC 62.298 60.000 3.71 0.00 0.00 5.19
3402 3713 2.509336 CATGTGTCCCTCGCGACC 60.509 66.667 3.71 0.00 31.35 4.79
3403 3714 2.680352 ATGTGTCCCTCGCGACCT 60.680 61.111 3.71 0.00 31.35 3.85
3404 3715 2.283529 ATGTGTCCCTCGCGACCTT 61.284 57.895 3.71 0.00 31.35 3.50
3405 3716 1.827399 ATGTGTCCCTCGCGACCTTT 61.827 55.000 3.71 0.00 31.35 3.11
3406 3717 2.027625 GTGTCCCTCGCGACCTTTG 61.028 63.158 3.71 0.00 31.35 2.77
3407 3718 2.342648 GTCCCTCGCGACCTTTGT 59.657 61.111 3.71 0.00 0.00 2.83
3408 3719 1.301479 GTCCCTCGCGACCTTTGTT 60.301 57.895 3.71 0.00 0.00 2.83
3409 3720 1.005394 TCCCTCGCGACCTTTGTTC 60.005 57.895 3.71 0.00 0.00 3.18
3410 3721 2.033194 CCCTCGCGACCTTTGTTCC 61.033 63.158 3.71 0.00 0.00 3.62
3411 3722 1.004918 CCTCGCGACCTTTGTTCCT 60.005 57.895 3.71 0.00 0.00 3.36
3412 3723 0.602905 CCTCGCGACCTTTGTTCCTT 60.603 55.000 3.71 0.00 0.00 3.36
3413 3724 0.512952 CTCGCGACCTTTGTTCCTTG 59.487 55.000 3.71 0.00 0.00 3.61
3414 3725 0.179067 TCGCGACCTTTGTTCCTTGT 60.179 50.000 3.71 0.00 0.00 3.16
3415 3726 0.661020 CGCGACCTTTGTTCCTTGTT 59.339 50.000 0.00 0.00 0.00 2.83
3416 3727 1.596954 CGCGACCTTTGTTCCTTGTTG 60.597 52.381 0.00 0.00 0.00 3.33
3417 3728 1.269051 GCGACCTTTGTTCCTTGTTGG 60.269 52.381 0.00 0.00 37.10 3.77
3418 3729 1.269051 CGACCTTTGTTCCTTGTTGGC 60.269 52.381 0.00 0.00 35.26 4.52
3419 3730 1.068588 GACCTTTGTTCCTTGTTGGCC 59.931 52.381 0.00 0.00 35.26 5.36
3420 3731 1.118838 CCTTTGTTCCTTGTTGGCCA 58.881 50.000 0.00 0.00 35.26 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
405 419 8.554528 CAACTGGCTTATCAGTCACATTATTAG 58.445 37.037 0.00 0.00 46.17 1.73
649 668 5.900699 TGCCAACCCAGATAGTGTAGTTATA 59.099 40.000 0.00 0.00 0.00 0.98
747 766 9.630098 GCCCAACATATTTTGAAGTATGATATG 57.370 33.333 11.66 0.00 36.96 1.78
967 989 7.826690 TGTATTCAGCTCCAAATAAAAAGGAC 58.173 34.615 0.00 0.00 0.00 3.85
1085 1119 7.934665 ACAAAACTATATGCACCCGTATTGATA 59.065 33.333 0.00 0.00 0.00 2.15
1089 1123 6.116806 TCACAAAACTATATGCACCCGTATT 58.883 36.000 0.00 0.00 0.00 1.89
1093 1127 5.499139 AATCACAAAACTATATGCACCCG 57.501 39.130 0.00 0.00 0.00 5.28
1526 1571 3.902881 ACTGAGTAGGGAGCATCAAAG 57.097 47.619 0.00 0.00 36.25 2.77
1558 1603 0.113776 TAGGAGGAGTGGACGTGGTT 59.886 55.000 0.00 0.00 0.00 3.67
1939 1999 1.316651 GGAGGGAGCAGATTGAATGC 58.683 55.000 0.00 0.00 44.18 3.56
1961 2021 6.830838 ACTAGAGGAGCTTCAATTAATTTGGG 59.169 38.462 0.00 0.00 35.92 4.12
1975 2035 7.964666 AAGATAAAGTTGTACTAGAGGAGCT 57.035 36.000 0.00 0.00 0.00 4.09
2156 2398 5.467399 TGTGGCACAAGTACATGTACTAAAC 59.533 40.000 33.12 23.59 44.96 2.01
2430 2693 9.757227 AAGTCTAAATTATCTGTGATCTAGTGC 57.243 33.333 0.00 0.00 0.00 4.40
2485 2748 8.970691 AAAATATCCGTCAAATGAAACTCAAG 57.029 30.769 0.00 0.00 0.00 3.02
2663 2973 7.435068 AATGTTTGTAGCGAGAAACTATTGT 57.565 32.000 17.98 0.10 39.11 2.71
2893 3204 2.028748 ACAACCTATACCAACGACGCTT 60.029 45.455 0.00 0.00 0.00 4.68
2936 3247 3.282885 TGTGATGACGACTGATAGCTCT 58.717 45.455 0.00 0.00 0.00 4.09
2972 3283 3.932545 ATCATGACGACTGATAGCTCC 57.067 47.619 0.00 0.00 31.65 4.70
3269 3580 1.872234 GAGTGCGTGCGCGATAGAA 60.872 57.895 26.19 0.00 45.51 2.10
3270 3581 2.277949 GAGTGCGTGCGCGATAGA 60.278 61.111 26.19 0.00 45.51 1.98
3271 3582 3.323136 GGAGTGCGTGCGCGATAG 61.323 66.667 26.19 0.00 45.51 2.08
3272 3583 4.865761 GGGAGTGCGTGCGCGATA 62.866 66.667 26.19 8.56 45.51 2.92
3277 3588 2.434884 ATCAAGGGAGTGCGTGCG 60.435 61.111 0.00 0.00 0.00 5.34
3278 3589 1.078848 AGATCAAGGGAGTGCGTGC 60.079 57.895 0.00 0.00 0.00 5.34
3279 3590 0.460987 GGAGATCAAGGGAGTGCGTG 60.461 60.000 0.00 0.00 0.00 5.34
3280 3591 1.617947 GGGAGATCAAGGGAGTGCGT 61.618 60.000 0.00 0.00 0.00 5.24
3281 3592 1.144936 GGGAGATCAAGGGAGTGCG 59.855 63.158 0.00 0.00 0.00 5.34
3282 3593 0.107459 GTGGGAGATCAAGGGAGTGC 60.107 60.000 0.00 0.00 0.00 4.40
3283 3594 0.543749 GGTGGGAGATCAAGGGAGTG 59.456 60.000 0.00 0.00 0.00 3.51
3284 3595 0.621862 GGGTGGGAGATCAAGGGAGT 60.622 60.000 0.00 0.00 0.00 3.85
3285 3596 0.621571 TGGGTGGGAGATCAAGGGAG 60.622 60.000 0.00 0.00 0.00 4.30
3286 3597 0.046242 ATGGGTGGGAGATCAAGGGA 59.954 55.000 0.00 0.00 0.00 4.20
3287 3598 1.819753 TATGGGTGGGAGATCAAGGG 58.180 55.000 0.00 0.00 0.00 3.95
3288 3599 4.171234 ACTATATGGGTGGGAGATCAAGG 58.829 47.826 0.00 0.00 0.00 3.61
3289 3600 4.223923 GGACTATATGGGTGGGAGATCAAG 59.776 50.000 0.00 0.00 0.00 3.02
3290 3601 4.168101 GGACTATATGGGTGGGAGATCAA 58.832 47.826 0.00 0.00 0.00 2.57
3291 3602 3.504156 GGGACTATATGGGTGGGAGATCA 60.504 52.174 0.00 0.00 0.00 2.92
3292 3603 3.108376 GGGACTATATGGGTGGGAGATC 58.892 54.545 0.00 0.00 0.00 2.75
3293 3604 2.225908 GGGGACTATATGGGTGGGAGAT 60.226 54.545 0.00 0.00 0.00 2.75
3294 3605 1.151413 GGGGACTATATGGGTGGGAGA 59.849 57.143 0.00 0.00 0.00 3.71
3295 3606 1.152271 AGGGGACTATATGGGTGGGAG 59.848 57.143 0.00 0.00 40.61 4.30
3296 3607 1.151413 GAGGGGACTATATGGGTGGGA 59.849 57.143 0.00 0.00 44.43 4.37
3297 3608 1.132527 TGAGGGGACTATATGGGTGGG 60.133 57.143 0.00 0.00 44.43 4.61
3298 3609 1.978580 GTGAGGGGACTATATGGGTGG 59.021 57.143 0.00 0.00 44.43 4.61
3299 3610 1.618837 CGTGAGGGGACTATATGGGTG 59.381 57.143 0.00 0.00 44.43 4.61
3300 3611 1.502039 TCGTGAGGGGACTATATGGGT 59.498 52.381 0.00 0.00 44.43 4.51
3301 3612 2.304221 TCGTGAGGGGACTATATGGG 57.696 55.000 0.00 0.00 44.43 4.00
3302 3613 3.697045 GAGATCGTGAGGGGACTATATGG 59.303 52.174 0.00 0.00 44.43 2.74
3303 3614 3.375610 CGAGATCGTGAGGGGACTATATG 59.624 52.174 0.00 0.00 35.95 1.78
3304 3615 3.263681 TCGAGATCGTGAGGGGACTATAT 59.736 47.826 1.70 0.00 40.22 0.86
3305 3616 2.636403 TCGAGATCGTGAGGGGACTATA 59.364 50.000 1.70 0.00 40.22 1.31
3306 3617 1.420514 TCGAGATCGTGAGGGGACTAT 59.579 52.381 1.70 0.00 40.22 2.12
3307 3618 0.835276 TCGAGATCGTGAGGGGACTA 59.165 55.000 1.70 0.00 40.22 2.59
3308 3619 0.748729 GTCGAGATCGTGAGGGGACT 60.749 60.000 1.70 0.00 42.03 3.85
3309 3620 1.728672 GTCGAGATCGTGAGGGGAC 59.271 63.158 1.70 0.00 40.80 4.46
3310 3621 1.818363 CGTCGAGATCGTGAGGGGA 60.818 63.158 1.70 0.00 40.80 4.81
3311 3622 2.716244 CGTCGAGATCGTGAGGGG 59.284 66.667 1.70 0.00 40.80 4.79
3312 3623 2.716244 CCGTCGAGATCGTGAGGG 59.284 66.667 12.49 12.49 40.80 4.30
3313 3624 1.167155 ATCCCGTCGAGATCGTGAGG 61.167 60.000 1.70 4.61 40.80 3.86
3314 3625 0.236187 GATCCCGTCGAGATCGTGAG 59.764 60.000 0.66 0.00 40.80 3.51
3315 3626 0.179054 AGATCCCGTCGAGATCGTGA 60.179 55.000 10.63 0.00 44.02 4.35
3316 3627 0.236187 GAGATCCCGTCGAGATCGTG 59.764 60.000 10.63 0.00 44.02 4.35
3317 3628 0.107081 AGAGATCCCGTCGAGATCGT 59.893 55.000 10.63 0.71 44.02 3.73
3318 3629 0.793861 GAGAGATCCCGTCGAGATCG 59.206 60.000 10.63 0.00 44.02 3.69
3319 3630 2.178912 AGAGAGATCCCGTCGAGATC 57.821 55.000 8.58 8.58 40.42 2.75
3320 3631 3.262151 TGATAGAGAGATCCCGTCGAGAT 59.738 47.826 0.00 0.00 0.00 2.75
3321 3632 2.633481 TGATAGAGAGATCCCGTCGAGA 59.367 50.000 0.00 0.00 0.00 4.04
3322 3633 2.739913 GTGATAGAGAGATCCCGTCGAG 59.260 54.545 0.00 0.00 0.00 4.04
3323 3634 2.104281 TGTGATAGAGAGATCCCGTCGA 59.896 50.000 0.00 0.00 0.00 4.20
3324 3635 2.495084 TGTGATAGAGAGATCCCGTCG 58.505 52.381 0.00 0.00 0.00 5.12
3325 3636 4.098044 TGTTTGTGATAGAGAGATCCCGTC 59.902 45.833 0.00 0.00 0.00 4.79
3326 3637 4.023980 TGTTTGTGATAGAGAGATCCCGT 58.976 43.478 0.00 0.00 0.00 5.28
3327 3638 4.142160 TGTGTTTGTGATAGAGAGATCCCG 60.142 45.833 0.00 0.00 0.00 5.14
3328 3639 5.112686 GTGTGTTTGTGATAGAGAGATCCC 58.887 45.833 0.00 0.00 0.00 3.85
3329 3640 5.112686 GGTGTGTTTGTGATAGAGAGATCC 58.887 45.833 0.00 0.00 0.00 3.36
3330 3641 5.105146 AGGGTGTGTTTGTGATAGAGAGATC 60.105 44.000 0.00 0.00 0.00 2.75
3331 3642 4.780021 AGGGTGTGTTTGTGATAGAGAGAT 59.220 41.667 0.00 0.00 0.00 2.75
3332 3643 4.160329 AGGGTGTGTTTGTGATAGAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
3333 3644 4.221703 AGAGGGTGTGTTTGTGATAGAGAG 59.778 45.833 0.00 0.00 0.00 3.20
3334 3645 4.160329 AGAGGGTGTGTTTGTGATAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
3335 3646 4.221703 AGAGAGGGTGTGTTTGTGATAGAG 59.778 45.833 0.00 0.00 0.00 2.43
3336 3647 4.160329 AGAGAGGGTGTGTTTGTGATAGA 58.840 43.478 0.00 0.00 0.00 1.98
3337 3648 4.221703 AGAGAGAGGGTGTGTTTGTGATAG 59.778 45.833 0.00 0.00 0.00 2.08
3338 3649 4.160329 AGAGAGAGGGTGTGTTTGTGATA 58.840 43.478 0.00 0.00 0.00 2.15
3339 3650 2.975489 AGAGAGAGGGTGTGTTTGTGAT 59.025 45.455 0.00 0.00 0.00 3.06
3340 3651 2.365617 GAGAGAGAGGGTGTGTTTGTGA 59.634 50.000 0.00 0.00 0.00 3.58
3341 3652 2.548920 GGAGAGAGAGGGTGTGTTTGTG 60.549 54.545 0.00 0.00 0.00 3.33
3342 3653 1.694696 GGAGAGAGAGGGTGTGTTTGT 59.305 52.381 0.00 0.00 0.00 2.83
3343 3654 1.002544 GGGAGAGAGAGGGTGTGTTTG 59.997 57.143 0.00 0.00 0.00 2.93
3344 3655 1.132689 AGGGAGAGAGAGGGTGTGTTT 60.133 52.381 0.00 0.00 0.00 2.83
3345 3656 0.489567 AGGGAGAGAGAGGGTGTGTT 59.510 55.000 0.00 0.00 0.00 3.32
3346 3657 0.040499 GAGGGAGAGAGAGGGTGTGT 59.960 60.000 0.00 0.00 0.00 3.72
3347 3658 0.686112 GGAGGGAGAGAGAGGGTGTG 60.686 65.000 0.00 0.00 0.00 3.82
3348 3659 1.700985 GGAGGGAGAGAGAGGGTGT 59.299 63.158 0.00 0.00 0.00 4.16
3349 3660 1.075600 GGGAGGGAGAGAGAGGGTG 60.076 68.421 0.00 0.00 0.00 4.61
3350 3661 2.329399 GGGGAGGGAGAGAGAGGGT 61.329 68.421 0.00 0.00 0.00 4.34
3351 3662 1.673928 ATGGGGAGGGAGAGAGAGGG 61.674 65.000 0.00 0.00 0.00 4.30
3352 3663 0.471591 CATGGGGAGGGAGAGAGAGG 60.472 65.000 0.00 0.00 0.00 3.69
3353 3664 0.264359 ACATGGGGAGGGAGAGAGAG 59.736 60.000 0.00 0.00 0.00 3.20
3354 3665 0.031716 CACATGGGGAGGGAGAGAGA 60.032 60.000 0.00 0.00 0.00 3.10
3355 3666 0.326048 ACACATGGGGAGGGAGAGAG 60.326 60.000 0.00 0.00 0.00 3.20
3356 3667 0.325671 GACACATGGGGAGGGAGAGA 60.326 60.000 0.00 0.00 0.00 3.10
3357 3668 1.341156 GGACACATGGGGAGGGAGAG 61.341 65.000 0.00 0.00 0.00 3.20
3358 3669 1.306997 GGACACATGGGGAGGGAGA 60.307 63.158 0.00 0.00 0.00 3.71
3359 3670 0.990282 ATGGACACATGGGGAGGGAG 60.990 60.000 0.00 0.00 35.57 4.30
3360 3671 1.084652 ATGGACACATGGGGAGGGA 59.915 57.895 0.00 0.00 35.57 4.20
3361 3672 3.759750 ATGGACACATGGGGAGGG 58.240 61.111 0.00 0.00 35.57 4.30
3369 3680 1.063492 ACATGGATGGCATGGACACAT 60.063 47.619 3.81 0.00 37.99 3.21
3370 3681 0.332293 ACATGGATGGCATGGACACA 59.668 50.000 3.81 0.00 34.56 3.72
3371 3682 0.742505 CACATGGATGGCATGGACAC 59.257 55.000 3.81 0.00 34.56 3.67
3372 3683 0.332293 ACACATGGATGGCATGGACA 59.668 50.000 3.81 1.12 34.56 4.02
3373 3684 1.027357 GACACATGGATGGCATGGAC 58.973 55.000 3.81 0.00 34.56 4.02
3374 3685 0.106569 GGACACATGGATGGCATGGA 60.107 55.000 3.81 0.00 34.56 3.41
3375 3686 1.111116 GGGACACATGGATGGCATGG 61.111 60.000 3.81 0.00 34.56 3.66
3376 3687 0.106369 AGGGACACATGGATGGCATG 60.106 55.000 3.81 0.00 36.22 4.06
3377 3688 0.184451 GAGGGACACATGGATGGCAT 59.816 55.000 0.00 0.00 0.00 4.40
3378 3689 1.609239 GAGGGACACATGGATGGCA 59.391 57.895 0.00 0.00 0.00 4.92
3379 3690 1.524621 CGAGGGACACATGGATGGC 60.525 63.158 0.00 0.00 0.00 4.40
3380 3691 1.524621 GCGAGGGACACATGGATGG 60.525 63.158 0.00 0.00 0.00 3.51
3381 3692 1.884464 CGCGAGGGACACATGGATG 60.884 63.158 0.00 0.00 0.00 3.51
3382 3693 2.058001 TCGCGAGGGACACATGGAT 61.058 57.895 3.71 0.00 0.00 3.41
3383 3694 2.678580 TCGCGAGGGACACATGGA 60.679 61.111 3.71 0.00 0.00 3.41
3384 3695 2.509336 GTCGCGAGGGACACATGG 60.509 66.667 10.24 0.00 36.91 3.66
3385 3696 2.507110 AAGGTCGCGAGGGACACATG 62.507 60.000 10.24 0.00 38.70 3.21
3386 3697 1.827399 AAAGGTCGCGAGGGACACAT 61.827 55.000 10.24 0.00 38.70 3.21
3387 3698 2.504274 AAAGGTCGCGAGGGACACA 61.504 57.895 10.24 0.00 38.70 3.72
3388 3699 2.027625 CAAAGGTCGCGAGGGACAC 61.028 63.158 10.24 0.00 38.70 3.67
3389 3700 2.035237 AACAAAGGTCGCGAGGGACA 62.035 55.000 10.24 0.00 38.70 4.02
3390 3701 1.289800 GAACAAAGGTCGCGAGGGAC 61.290 60.000 10.24 11.23 36.18 4.46
3391 3702 1.005394 GAACAAAGGTCGCGAGGGA 60.005 57.895 10.24 0.00 0.00 4.20
3392 3703 2.033194 GGAACAAAGGTCGCGAGGG 61.033 63.158 10.24 0.00 0.00 4.30
3393 3704 0.602905 AAGGAACAAAGGTCGCGAGG 60.603 55.000 10.24 0.00 0.00 4.63
3394 3705 0.512952 CAAGGAACAAAGGTCGCGAG 59.487 55.000 10.24 0.00 0.00 5.03
3395 3706 0.179067 ACAAGGAACAAAGGTCGCGA 60.179 50.000 3.71 3.71 0.00 5.87
3396 3707 0.661020 AACAAGGAACAAAGGTCGCG 59.339 50.000 0.00 0.00 0.00 5.87
3397 3708 1.269051 CCAACAAGGAACAAAGGTCGC 60.269 52.381 0.00 0.00 41.22 5.19
3398 3709 1.269051 GCCAACAAGGAACAAAGGTCG 60.269 52.381 0.00 0.00 41.22 4.79
3399 3710 1.068588 GGCCAACAAGGAACAAAGGTC 59.931 52.381 0.00 0.00 41.22 3.85
3400 3711 1.119684 GGCCAACAAGGAACAAAGGT 58.880 50.000 0.00 0.00 41.22 3.50
3401 3712 1.118838 TGGCCAACAAGGAACAAAGG 58.881 50.000 0.61 0.00 41.22 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.