Multiple sequence alignment - TraesCS3A01G124000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G124000 chr3A 100.000 2337 0 0 1 2337 100035989 100033653 0.000000e+00 4316
1 TraesCS3A01G124000 chr3A 83.236 1366 216 12 1 1360 352452325 352450967 0.000000e+00 1242
2 TraesCS3A01G124000 chr3A 95.869 581 23 1 1758 2337 461147562 461146982 0.000000e+00 939
3 TraesCS3A01G124000 chr3A 95.424 590 23 4 1749 2337 716619483 716618897 0.000000e+00 937
4 TraesCS3A01G124000 chr7D 95.011 1363 63 5 1 1360 497005872 497007232 0.000000e+00 2135
5 TraesCS3A01G124000 chr7D 85.567 1358 185 8 1 1352 472803815 472802463 0.000000e+00 1411
6 TraesCS3A01G124000 chr7D 96.354 576 20 1 1763 2337 436868229 436867654 0.000000e+00 946
7 TraesCS3A01G124000 chr7D 96.181 576 21 1 1763 2337 515410816 515410241 0.000000e+00 941
8 TraesCS3A01G124000 chr7A 94.721 1364 68 3 1 1360 75026911 75025548 0.000000e+00 2117
9 TraesCS3A01G124000 chr3B 94.282 1364 68 4 1 1360 410610872 410612229 0.000000e+00 2078
10 TraesCS3A01G124000 chr3B 93.035 201 13 1 1563 1763 132613899 132614098 2.270000e-75 292
11 TraesCS3A01G124000 chr3B 89.474 209 20 2 1357 1563 132613729 132613937 1.780000e-66 263
12 TraesCS3A01G124000 chr2A 94.742 989 50 2 1 987 54148498 54147510 0.000000e+00 1537
13 TraesCS3A01G124000 chr2D 93.478 1012 57 7 1 1009 340516652 340517657 0.000000e+00 1495
14 TraesCS3A01G124000 chr1D 84.464 1371 199 13 1 1360 286395885 286397252 0.000000e+00 1339
15 TraesCS3A01G124000 chr3D 84.542 1365 196 12 1 1357 339845390 339844033 0.000000e+00 1338
16 TraesCS3A01G124000 chr3D 83.150 1365 216 11 1 1359 213677769 213676413 0.000000e+00 1234
17 TraesCS3A01G124000 chr3D 82.809 1367 226 8 1 1361 177015446 177014083 0.000000e+00 1214
18 TraesCS3A01G124000 chr3D 96.181 576 20 2 1763 2337 311722277 311721703 0.000000e+00 941
19 TraesCS3A01G124000 chr3D 91.045 201 17 1 1563 1763 83930635 83930436 1.060000e-68 270
20 TraesCS3A01G124000 chr3D 90.547 201 18 1 1563 1763 84000499 84000300 4.950000e-67 265
21 TraesCS3A01G124000 chr3D 88.038 209 23 2 1357 1563 84000669 84000461 1.790000e-61 246
22 TraesCS3A01G124000 chr3D 86.667 210 25 3 1356 1563 83930805 83930597 1.810000e-56 230
23 TraesCS3A01G124000 chr6A 96.842 570 18 0 1768 2337 579881837 579882406 0.000000e+00 953
24 TraesCS3A01G124000 chr5D 96.354 576 20 1 1763 2337 494640895 494641470 0.000000e+00 946
25 TraesCS3A01G124000 chr5D 96.181 576 21 1 1763 2337 526795827 526795252 0.000000e+00 941
26 TraesCS3A01G124000 chr5A 96.181 576 21 1 1763 2337 694663546 694662971 0.000000e+00 941


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G124000 chr3A 100033653 100035989 2336 True 4316 4316 100.000 1 2337 1 chr3A.!!$R1 2336
1 TraesCS3A01G124000 chr3A 352450967 352452325 1358 True 1242 1242 83.236 1 1360 1 chr3A.!!$R2 1359
2 TraesCS3A01G124000 chr3A 461146982 461147562 580 True 939 939 95.869 1758 2337 1 chr3A.!!$R3 579
3 TraesCS3A01G124000 chr3A 716618897 716619483 586 True 937 937 95.424 1749 2337 1 chr3A.!!$R4 588
4 TraesCS3A01G124000 chr7D 497005872 497007232 1360 False 2135 2135 95.011 1 1360 1 chr7D.!!$F1 1359
5 TraesCS3A01G124000 chr7D 472802463 472803815 1352 True 1411 1411 85.567 1 1352 1 chr7D.!!$R2 1351
6 TraesCS3A01G124000 chr7D 436867654 436868229 575 True 946 946 96.354 1763 2337 1 chr7D.!!$R1 574
7 TraesCS3A01G124000 chr7D 515410241 515410816 575 True 941 941 96.181 1763 2337 1 chr7D.!!$R3 574
8 TraesCS3A01G124000 chr7A 75025548 75026911 1363 True 2117 2117 94.721 1 1360 1 chr7A.!!$R1 1359
9 TraesCS3A01G124000 chr3B 410610872 410612229 1357 False 2078 2078 94.282 1 1360 1 chr3B.!!$F1 1359
10 TraesCS3A01G124000 chr2A 54147510 54148498 988 True 1537 1537 94.742 1 987 1 chr2A.!!$R1 986
11 TraesCS3A01G124000 chr2D 340516652 340517657 1005 False 1495 1495 93.478 1 1009 1 chr2D.!!$F1 1008
12 TraesCS3A01G124000 chr1D 286395885 286397252 1367 False 1339 1339 84.464 1 1360 1 chr1D.!!$F1 1359
13 TraesCS3A01G124000 chr3D 339844033 339845390 1357 True 1338 1338 84.542 1 1357 1 chr3D.!!$R4 1356
14 TraesCS3A01G124000 chr3D 213676413 213677769 1356 True 1234 1234 83.150 1 1359 1 chr3D.!!$R2 1358
15 TraesCS3A01G124000 chr3D 177014083 177015446 1363 True 1214 1214 82.809 1 1361 1 chr3D.!!$R1 1360
16 TraesCS3A01G124000 chr3D 311721703 311722277 574 True 941 941 96.181 1763 2337 1 chr3D.!!$R3 574
17 TraesCS3A01G124000 chr6A 579881837 579882406 569 False 953 953 96.842 1768 2337 1 chr6A.!!$F1 569
18 TraesCS3A01G124000 chr5D 494640895 494641470 575 False 946 946 96.354 1763 2337 1 chr5D.!!$F1 574
19 TraesCS3A01G124000 chr5D 526795252 526795827 575 True 941 941 96.181 1763 2337 1 chr5D.!!$R1 574
20 TraesCS3A01G124000 chr5A 694662971 694663546 575 True 941 941 96.181 1763 2337 1 chr5A.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 935 0.031917 TAGGGGAACTATGTGGGCGA 60.032 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1765 0.107703 TCCCAACAGAGCTTATGCGG 60.108 55.0 0.0 0.0 45.42 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 209 4.938226 GGATTCTTTCAATTCCACTCTCGT 59.062 41.667 0.00 0.00 0.00 4.18
389 392 0.872388 GGAAGTTATATTGCCCGGCG 59.128 55.000 4.58 0.00 0.00 6.46
495 498 1.529244 ACTTGCCCCACTTGCTCAC 60.529 57.895 0.00 0.00 0.00 3.51
616 620 1.007721 AGTAGACCATGCTGGAGAGGT 59.992 52.381 8.91 0.00 40.96 3.85
655 659 3.601443 ACTTCTCTCGGACCAAGATTG 57.399 47.619 0.00 0.00 0.00 2.67
682 686 2.039613 TGATAGGTCACCACAATGTGCA 59.960 45.455 8.05 0.00 36.17 4.57
750 754 5.063564 CGGAAGTTAGTGCATAAGGAGAAAC 59.936 44.000 0.00 0.00 0.00 2.78
786 790 6.357579 TGCAGATTTCAATGGGTGTTTTAT 57.642 33.333 0.00 0.00 0.00 1.40
861 866 2.841595 GGATGGTCCTGTCCCCTAG 58.158 63.158 3.22 0.00 32.53 3.02
862 867 0.264955 GGATGGTCCTGTCCCCTAGA 59.735 60.000 0.00 0.00 32.53 2.43
918 925 3.983410 ACCATGATATGCTTAGGGGAACT 59.017 43.478 0.00 0.00 0.00 3.01
922 929 6.296662 CCATGATATGCTTAGGGGAACTATGT 60.297 42.308 0.00 0.00 31.33 2.29
928 935 0.031917 TAGGGGAACTATGTGGGCGA 60.032 55.000 0.00 0.00 0.00 5.54
1377 1391 4.972514 AAAAGCACTTATCCAGCTTAGC 57.027 40.909 0.00 0.00 46.95 3.09
1378 1392 3.634397 AAGCACTTATCCAGCTTAGCA 57.366 42.857 7.07 0.00 45.91 3.49
1379 1393 3.634397 AGCACTTATCCAGCTTAGCAA 57.366 42.857 7.07 0.00 34.37 3.91
1380 1394 3.955471 AGCACTTATCCAGCTTAGCAAA 58.045 40.909 7.07 0.00 34.37 3.68
1381 1395 3.691609 AGCACTTATCCAGCTTAGCAAAC 59.308 43.478 7.07 0.00 34.37 2.93
1382 1396 3.440173 GCACTTATCCAGCTTAGCAAACA 59.560 43.478 7.07 0.00 0.00 2.83
1383 1397 4.082787 GCACTTATCCAGCTTAGCAAACAA 60.083 41.667 7.07 0.00 0.00 2.83
1384 1398 5.393461 GCACTTATCCAGCTTAGCAAACAAT 60.393 40.000 7.07 0.00 0.00 2.71
1385 1399 6.624423 CACTTATCCAGCTTAGCAAACAATT 58.376 36.000 7.07 0.00 0.00 2.32
1386 1400 6.529125 CACTTATCCAGCTTAGCAAACAATTG 59.471 38.462 7.07 3.24 39.65 2.32
1387 1401 6.209391 ACTTATCCAGCTTAGCAAACAATTGT 59.791 34.615 4.92 4.92 38.85 2.71
1388 1402 4.935352 TCCAGCTTAGCAAACAATTGTT 57.065 36.364 18.13 18.13 38.85 2.83
1389 1403 4.619973 TCCAGCTTAGCAAACAATTGTTG 58.380 39.130 23.93 17.66 38.44 3.33
1390 1404 3.742369 CCAGCTTAGCAAACAATTGTTGG 59.258 43.478 23.93 21.71 38.44 3.77
1391 1405 4.501229 CCAGCTTAGCAAACAATTGTTGGA 60.501 41.667 26.65 6.45 38.44 3.53
1392 1406 4.445385 CAGCTTAGCAAACAATTGTTGGAC 59.555 41.667 26.65 17.74 38.44 4.02
1393 1407 4.342092 AGCTTAGCAAACAATTGTTGGACT 59.658 37.500 26.65 22.59 38.44 3.85
1394 1408 5.534654 AGCTTAGCAAACAATTGTTGGACTA 59.465 36.000 26.65 21.74 38.44 2.59
1395 1409 5.858581 GCTTAGCAAACAATTGTTGGACTAG 59.141 40.000 26.65 18.78 38.44 2.57
1396 1410 6.515035 GCTTAGCAAACAATTGTTGGACTAGT 60.515 38.462 26.65 6.73 38.44 2.57
1397 1411 7.308348 GCTTAGCAAACAATTGTTGGACTAGTA 60.308 37.037 26.65 12.87 38.44 1.82
1398 1412 8.630054 TTAGCAAACAATTGTTGGACTAGTAT 57.370 30.769 26.65 5.31 38.44 2.12
1399 1413 7.145932 AGCAAACAATTGTTGGACTAGTATC 57.854 36.000 26.65 8.40 38.44 2.24
1400 1414 6.714810 AGCAAACAATTGTTGGACTAGTATCA 59.285 34.615 26.65 0.00 38.44 2.15
1401 1415 6.801862 GCAAACAATTGTTGGACTAGTATCAC 59.198 38.462 26.65 3.80 38.44 3.06
1402 1416 7.308589 GCAAACAATTGTTGGACTAGTATCACT 60.309 37.037 26.65 3.48 38.44 3.41
1403 1417 8.567948 CAAACAATTGTTGGACTAGTATCACTT 58.432 33.333 23.93 0.04 38.44 3.16
1404 1418 9.787435 AAACAATTGTTGGACTAGTATCACTTA 57.213 29.630 23.93 0.00 38.44 2.24
1405 1419 9.787435 AACAATTGTTGGACTAGTATCACTTAA 57.213 29.630 22.71 0.00 36.80 1.85
1406 1420 9.787435 ACAATTGTTGGACTAGTATCACTTAAA 57.213 29.630 4.92 0.00 34.12 1.52
1410 1424 9.616156 TTGTTGGACTAGTATCACTTAAAAACA 57.384 29.630 0.00 0.00 0.00 2.83
1411 1425 9.616156 TGTTGGACTAGTATCACTTAAAAACAA 57.384 29.630 0.00 0.00 0.00 2.83
1423 1437 9.986833 ATCACTTAAAAACAAATGAAAAACTGC 57.013 25.926 0.00 0.00 0.00 4.40
1424 1438 9.213799 TCACTTAAAAACAAATGAAAAACTGCT 57.786 25.926 0.00 0.00 0.00 4.24
1425 1439 9.824534 CACTTAAAAACAAATGAAAAACTGCTT 57.175 25.926 0.00 0.00 0.00 3.91
1433 1447 9.822185 AACAAATGAAAAACTGCTTCTATTTCT 57.178 25.926 0.00 0.00 32.60 2.52
1434 1448 9.822185 ACAAATGAAAAACTGCTTCTATTTCTT 57.178 25.926 0.00 0.00 32.60 2.52
1437 1451 9.822185 AATGAAAAACTGCTTCTATTTCTTTGT 57.178 25.926 0.00 0.00 32.60 2.83
1445 1459 9.944376 ACTGCTTCTATTTCTTTGTAATACTCA 57.056 29.630 0.00 0.00 0.00 3.41
1447 1461 9.719355 TGCTTCTATTTCTTTGTAATACTCACA 57.281 29.630 0.00 0.00 0.00 3.58
1455 1469 7.864108 TCTTTGTAATACTCACATTCCATGG 57.136 36.000 4.97 4.97 33.60 3.66
1456 1470 6.828273 TCTTTGTAATACTCACATTCCATGGG 59.172 38.462 13.02 0.00 34.11 4.00
1457 1471 5.708736 TGTAATACTCACATTCCATGGGT 57.291 39.130 13.02 2.07 34.56 4.51
1458 1472 6.073447 TGTAATACTCACATTCCATGGGTT 57.927 37.500 13.02 0.00 34.56 4.11
1459 1473 6.489603 TGTAATACTCACATTCCATGGGTTT 58.510 36.000 13.02 0.00 34.56 3.27
1460 1474 5.920193 AATACTCACATTCCATGGGTTTG 57.080 39.130 13.02 9.73 34.56 2.93
1461 1475 3.524095 ACTCACATTCCATGGGTTTGA 57.476 42.857 13.02 9.04 34.56 2.69
1462 1476 3.424703 ACTCACATTCCATGGGTTTGAG 58.575 45.455 22.19 22.19 34.56 3.02
1463 1477 2.165030 CTCACATTCCATGGGTTTGAGC 59.835 50.000 13.02 0.00 34.56 4.26
1464 1478 1.894466 CACATTCCATGGGTTTGAGCA 59.106 47.619 13.02 0.00 33.60 4.26
1465 1479 2.498481 CACATTCCATGGGTTTGAGCAT 59.502 45.455 13.02 0.00 33.60 3.79
1466 1480 2.762327 ACATTCCATGGGTTTGAGCATC 59.238 45.455 13.02 0.00 33.60 3.91
1467 1481 1.851304 TTCCATGGGTTTGAGCATCC 58.149 50.000 13.02 0.00 0.00 3.51
1468 1482 0.033208 TCCATGGGTTTGAGCATCCC 60.033 55.000 13.02 0.00 41.41 3.85
1469 1483 0.032813 CCATGGGTTTGAGCATCCCT 60.033 55.000 2.85 0.00 41.58 4.20
1470 1484 1.396653 CATGGGTTTGAGCATCCCTC 58.603 55.000 10.89 0.00 41.58 4.30
1471 1485 1.064166 CATGGGTTTGAGCATCCCTCT 60.064 52.381 10.89 0.00 41.35 3.69
1472 1486 0.620556 TGGGTTTGAGCATCCCTCTC 59.379 55.000 10.89 0.00 41.35 3.20
1473 1487 0.915364 GGGTTTGAGCATCCCTCTCT 59.085 55.000 0.00 0.00 41.35 3.10
1474 1488 1.283321 GGGTTTGAGCATCCCTCTCTT 59.717 52.381 0.00 0.00 41.35 2.85
1475 1489 2.291217 GGGTTTGAGCATCCCTCTCTTT 60.291 50.000 0.00 0.00 41.35 2.52
1476 1490 3.013219 GGTTTGAGCATCCCTCTCTTTC 58.987 50.000 0.00 0.00 41.35 2.62
1477 1491 3.308046 GGTTTGAGCATCCCTCTCTTTCT 60.308 47.826 0.00 0.00 41.35 2.52
1478 1492 3.902881 TTGAGCATCCCTCTCTTTCTC 57.097 47.619 0.00 0.00 41.35 2.87
1479 1493 2.825223 TGAGCATCCCTCTCTTTCTCA 58.175 47.619 0.00 0.00 41.35 3.27
1480 1494 3.382278 TGAGCATCCCTCTCTTTCTCAT 58.618 45.455 0.00 0.00 41.35 2.90
1481 1495 4.550669 TGAGCATCCCTCTCTTTCTCATA 58.449 43.478 0.00 0.00 41.35 2.15
1482 1496 5.153675 TGAGCATCCCTCTCTTTCTCATAT 58.846 41.667 0.00 0.00 41.35 1.78
1483 1497 5.605908 TGAGCATCCCTCTCTTTCTCATATT 59.394 40.000 0.00 0.00 41.35 1.28
1484 1498 5.867330 AGCATCCCTCTCTTTCTCATATTG 58.133 41.667 0.00 0.00 0.00 1.90
1485 1499 5.369110 AGCATCCCTCTCTTTCTCATATTGT 59.631 40.000 0.00 0.00 0.00 2.71
1486 1500 5.700373 GCATCCCTCTCTTTCTCATATTGTC 59.300 44.000 0.00 0.00 0.00 3.18
1487 1501 5.878406 TCCCTCTCTTTCTCATATTGTCC 57.122 43.478 0.00 0.00 0.00 4.02
1488 1502 4.656112 TCCCTCTCTTTCTCATATTGTCCC 59.344 45.833 0.00 0.00 0.00 4.46
1489 1503 4.657969 CCCTCTCTTTCTCATATTGTCCCT 59.342 45.833 0.00 0.00 0.00 4.20
1490 1504 5.454471 CCCTCTCTTTCTCATATTGTCCCTG 60.454 48.000 0.00 0.00 0.00 4.45
1491 1505 5.028549 TCTCTTTCTCATATTGTCCCTGC 57.971 43.478 0.00 0.00 0.00 4.85
1492 1506 4.718774 TCTCTTTCTCATATTGTCCCTGCT 59.281 41.667 0.00 0.00 0.00 4.24
1493 1507 5.028549 TCTTTCTCATATTGTCCCTGCTC 57.971 43.478 0.00 0.00 0.00 4.26
1494 1508 4.471025 TCTTTCTCATATTGTCCCTGCTCA 59.529 41.667 0.00 0.00 0.00 4.26
1495 1509 5.131642 TCTTTCTCATATTGTCCCTGCTCAT 59.868 40.000 0.00 0.00 0.00 2.90
1496 1510 5.378230 TTCTCATATTGTCCCTGCTCATT 57.622 39.130 0.00 0.00 0.00 2.57
1497 1511 6.499106 TTCTCATATTGTCCCTGCTCATTA 57.501 37.500 0.00 0.00 0.00 1.90
1498 1512 6.692849 TCTCATATTGTCCCTGCTCATTAT 57.307 37.500 0.00 0.00 0.00 1.28
1499 1513 6.470278 TCTCATATTGTCCCTGCTCATTATG 58.530 40.000 0.00 0.00 33.23 1.90
1500 1514 6.043590 TCTCATATTGTCCCTGCTCATTATGT 59.956 38.462 0.00 0.00 33.47 2.29
1501 1515 6.604171 TCATATTGTCCCTGCTCATTATGTT 58.396 36.000 0.00 0.00 33.47 2.71
1502 1516 6.487668 TCATATTGTCCCTGCTCATTATGTTG 59.512 38.462 0.00 0.00 33.47 3.33
1503 1517 3.719268 TGTCCCTGCTCATTATGTTGT 57.281 42.857 0.00 0.00 0.00 3.32
1504 1518 4.032960 TGTCCCTGCTCATTATGTTGTT 57.967 40.909 0.00 0.00 0.00 2.83
1505 1519 5.172687 TGTCCCTGCTCATTATGTTGTTA 57.827 39.130 0.00 0.00 0.00 2.41
1506 1520 5.754782 TGTCCCTGCTCATTATGTTGTTAT 58.245 37.500 0.00 0.00 0.00 1.89
1507 1521 5.589855 TGTCCCTGCTCATTATGTTGTTATG 59.410 40.000 0.00 0.00 0.00 1.90
1508 1522 5.009010 GTCCCTGCTCATTATGTTGTTATGG 59.991 44.000 0.00 0.00 0.00 2.74
1509 1523 5.104151 TCCCTGCTCATTATGTTGTTATGGA 60.104 40.000 0.00 0.00 0.00 3.41
1510 1524 5.593909 CCCTGCTCATTATGTTGTTATGGAA 59.406 40.000 0.00 0.00 0.00 3.53
1511 1525 6.266103 CCCTGCTCATTATGTTGTTATGGAAT 59.734 38.462 0.00 0.00 0.00 3.01
1512 1526 7.448161 CCCTGCTCATTATGTTGTTATGGAATA 59.552 37.037 0.00 0.00 0.00 1.75
1513 1527 8.849168 CCTGCTCATTATGTTGTTATGGAATAA 58.151 33.333 0.00 0.00 36.20 1.40
1528 1542 6.916360 ATGGAATAACAGCCTCAAGAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
1529 1543 6.084326 TGGAATAACAGCCTCAAGAAAAAC 57.916 37.500 0.00 0.00 0.00 2.43
1530 1544 5.833131 TGGAATAACAGCCTCAAGAAAAACT 59.167 36.000 0.00 0.00 0.00 2.66
1531 1545 6.152379 GGAATAACAGCCTCAAGAAAAACTG 58.848 40.000 0.00 0.00 0.00 3.16
1532 1546 3.443099 AACAGCCTCAAGAAAAACTGC 57.557 42.857 0.00 0.00 0.00 4.40
1533 1547 2.378038 ACAGCCTCAAGAAAAACTGCA 58.622 42.857 0.00 0.00 0.00 4.41
1534 1548 2.099756 ACAGCCTCAAGAAAAACTGCAC 59.900 45.455 0.00 0.00 0.00 4.57
1535 1549 1.683385 AGCCTCAAGAAAAACTGCACC 59.317 47.619 0.00 0.00 0.00 5.01
1536 1550 1.269778 GCCTCAAGAAAAACTGCACCC 60.270 52.381 0.00 0.00 0.00 4.61
1537 1551 2.310538 CCTCAAGAAAAACTGCACCCT 58.689 47.619 0.00 0.00 0.00 4.34
1538 1552 3.486383 CCTCAAGAAAAACTGCACCCTA 58.514 45.455 0.00 0.00 0.00 3.53
1539 1553 3.503748 CCTCAAGAAAAACTGCACCCTAG 59.496 47.826 0.00 0.00 0.00 3.02
1540 1554 3.486383 TCAAGAAAAACTGCACCCTAGG 58.514 45.455 0.06 0.06 0.00 3.02
1541 1555 3.137544 TCAAGAAAAACTGCACCCTAGGA 59.862 43.478 11.48 0.00 0.00 2.94
1542 1556 3.425162 AGAAAAACTGCACCCTAGGAG 57.575 47.619 11.48 1.37 0.00 3.69
1543 1557 2.711547 AGAAAAACTGCACCCTAGGAGT 59.288 45.455 11.48 2.13 42.32 3.85
1544 1558 3.908103 AGAAAAACTGCACCCTAGGAGTA 59.092 43.478 11.48 0.73 39.41 2.59
1545 1559 4.349930 AGAAAAACTGCACCCTAGGAGTAA 59.650 41.667 11.48 0.00 39.41 2.24
1546 1560 4.717279 AAAACTGCACCCTAGGAGTAAA 57.283 40.909 11.48 0.00 39.41 2.01
1547 1561 4.929146 AAACTGCACCCTAGGAGTAAAT 57.071 40.909 11.48 0.00 39.41 1.40
1548 1562 4.929146 AACTGCACCCTAGGAGTAAATT 57.071 40.909 11.48 0.00 39.41 1.82
1549 1563 4.929146 ACTGCACCCTAGGAGTAAATTT 57.071 40.909 11.48 0.00 38.49 1.82
1550 1564 5.256806 ACTGCACCCTAGGAGTAAATTTT 57.743 39.130 11.48 0.00 38.49 1.82
1551 1565 6.382919 ACTGCACCCTAGGAGTAAATTTTA 57.617 37.500 11.48 0.00 38.49 1.52
1552 1566 6.786122 ACTGCACCCTAGGAGTAAATTTTAA 58.214 36.000 11.48 0.00 38.49 1.52
1553 1567 7.235804 ACTGCACCCTAGGAGTAAATTTTAAA 58.764 34.615 11.48 0.00 38.49 1.52
1554 1568 7.393515 ACTGCACCCTAGGAGTAAATTTTAAAG 59.606 37.037 11.48 0.00 38.49 1.85
1555 1569 7.463431 TGCACCCTAGGAGTAAATTTTAAAGA 58.537 34.615 11.48 0.00 0.00 2.52
1556 1570 7.392393 TGCACCCTAGGAGTAAATTTTAAAGAC 59.608 37.037 11.48 0.00 0.00 3.01
1557 1571 7.148120 GCACCCTAGGAGTAAATTTTAAAGACC 60.148 40.741 11.48 0.00 0.00 3.85
1558 1572 7.886446 CACCCTAGGAGTAAATTTTAAAGACCA 59.114 37.037 11.48 0.00 0.00 4.02
1559 1573 7.886970 ACCCTAGGAGTAAATTTTAAAGACCAC 59.113 37.037 11.48 0.00 0.00 4.16
1560 1574 7.886446 CCCTAGGAGTAAATTTTAAAGACCACA 59.114 37.037 11.48 0.00 0.00 4.17
1561 1575 9.462606 CCTAGGAGTAAATTTTAAAGACCACAT 57.537 33.333 1.05 0.00 0.00 3.21
1571 1585 9.476202 AATTTTAAAGACCACATAAAAGACTGC 57.524 29.630 0.00 0.00 33.48 4.40
1572 1586 7.575414 TTTAAAGACCACATAAAAGACTGCA 57.425 32.000 0.00 0.00 0.00 4.41
1573 1587 5.438761 AAAGACCACATAAAAGACTGCAC 57.561 39.130 0.00 0.00 0.00 4.57
1574 1588 4.357918 AGACCACATAAAAGACTGCACT 57.642 40.909 0.00 0.00 0.00 4.40
1575 1589 4.319177 AGACCACATAAAAGACTGCACTC 58.681 43.478 0.00 0.00 0.00 3.51
1576 1590 4.040952 AGACCACATAAAAGACTGCACTCT 59.959 41.667 0.00 0.00 0.00 3.24
1577 1591 4.067896 ACCACATAAAAGACTGCACTCTG 58.932 43.478 0.00 0.00 0.00 3.35
1578 1592 3.438087 CCACATAAAAGACTGCACTCTGG 59.562 47.826 0.00 0.00 0.00 3.86
1579 1593 3.438087 CACATAAAAGACTGCACTCTGGG 59.562 47.826 0.00 0.00 0.00 4.45
1580 1594 3.327757 ACATAAAAGACTGCACTCTGGGA 59.672 43.478 0.00 0.00 0.00 4.37
1581 1595 2.557920 AAAAGACTGCACTCTGGGAG 57.442 50.000 0.00 0.00 35.52 4.30
1582 1596 1.428869 AAAGACTGCACTCTGGGAGT 58.571 50.000 0.00 0.00 44.44 3.85
1583 1597 2.310779 AAGACTGCACTCTGGGAGTA 57.689 50.000 0.00 0.00 41.37 2.59
1584 1598 2.310779 AGACTGCACTCTGGGAGTAA 57.689 50.000 0.00 0.00 41.37 2.24
1585 1599 2.826488 AGACTGCACTCTGGGAGTAAT 58.174 47.619 0.00 0.00 41.37 1.89
1586 1600 3.177228 AGACTGCACTCTGGGAGTAATT 58.823 45.455 0.00 0.00 41.37 1.40
1587 1601 3.584848 AGACTGCACTCTGGGAGTAATTT 59.415 43.478 0.00 0.00 41.37 1.82
1588 1602 4.042187 AGACTGCACTCTGGGAGTAATTTT 59.958 41.667 0.00 0.00 41.37 1.82
1589 1603 4.729868 ACTGCACTCTGGGAGTAATTTTT 58.270 39.130 0.00 0.00 41.37 1.94
1590 1604 5.876357 ACTGCACTCTGGGAGTAATTTTTA 58.124 37.500 0.00 0.00 41.37 1.52
1591 1605 6.303839 ACTGCACTCTGGGAGTAATTTTTAA 58.696 36.000 0.00 0.00 41.37 1.52
1592 1606 6.775629 ACTGCACTCTGGGAGTAATTTTTAAA 59.224 34.615 0.00 0.00 41.37 1.52
1593 1607 7.040409 ACTGCACTCTGGGAGTAATTTTTAAAG 60.040 37.037 0.00 0.00 41.37 1.85
1594 1608 7.001674 TGCACTCTGGGAGTAATTTTTAAAGA 58.998 34.615 0.00 0.00 41.37 2.52
1595 1609 7.040686 TGCACTCTGGGAGTAATTTTTAAAGAC 60.041 37.037 0.00 0.00 41.37 3.01
1596 1610 7.575155 GCACTCTGGGAGTAATTTTTAAAGACC 60.575 40.741 0.00 0.00 41.37 3.85
1597 1611 7.447238 CACTCTGGGAGTAATTTTTAAAGACCA 59.553 37.037 0.00 0.00 41.37 4.02
1598 1612 7.447545 ACTCTGGGAGTAATTTTTAAAGACCAC 59.552 37.037 0.00 0.00 41.51 4.16
1599 1613 7.291566 TCTGGGAGTAATTTTTAAAGACCACA 58.708 34.615 0.00 0.00 0.00 4.17
1600 1614 7.947890 TCTGGGAGTAATTTTTAAAGACCACAT 59.052 33.333 0.00 0.00 0.00 3.21
1601 1615 9.238368 CTGGGAGTAATTTTTAAAGACCACATA 57.762 33.333 0.00 0.00 0.00 2.29
1602 1616 9.238368 TGGGAGTAATTTTTAAAGACCACATAG 57.762 33.333 0.00 0.00 0.00 2.23
1603 1617 8.188799 GGGAGTAATTTTTAAAGACCACATAGC 58.811 37.037 0.00 0.00 0.00 2.97
1604 1618 8.736244 GGAGTAATTTTTAAAGACCACATAGCA 58.264 33.333 0.00 0.00 0.00 3.49
1605 1619 9.774742 GAGTAATTTTTAAAGACCACATAGCAG 57.225 33.333 0.00 0.00 0.00 4.24
1606 1620 9.515226 AGTAATTTTTAAAGACCACATAGCAGA 57.485 29.630 0.00 0.00 0.00 4.26
1607 1621 9.774742 GTAATTTTTAAAGACCACATAGCAGAG 57.225 33.333 0.00 0.00 0.00 3.35
1608 1622 8.635765 AATTTTTAAAGACCACATAGCAGAGA 57.364 30.769 0.00 0.00 0.00 3.10
1609 1623 7.672983 TTTTTAAAGACCACATAGCAGAGAG 57.327 36.000 0.00 0.00 0.00 3.20
1610 1624 3.902881 AAAGACCACATAGCAGAGAGG 57.097 47.619 0.00 0.00 0.00 3.69
1611 1625 2.836636 AGACCACATAGCAGAGAGGA 57.163 50.000 0.00 0.00 0.00 3.71
1612 1626 3.107402 AGACCACATAGCAGAGAGGAA 57.893 47.619 0.00 0.00 0.00 3.36
1613 1627 3.445008 AGACCACATAGCAGAGAGGAAA 58.555 45.455 0.00 0.00 0.00 3.13
1614 1628 3.840666 AGACCACATAGCAGAGAGGAAAA 59.159 43.478 0.00 0.00 0.00 2.29
1615 1629 4.472833 AGACCACATAGCAGAGAGGAAAAT 59.527 41.667 0.00 0.00 0.00 1.82
1616 1630 5.663106 AGACCACATAGCAGAGAGGAAAATA 59.337 40.000 0.00 0.00 0.00 1.40
1617 1631 5.923204 ACCACATAGCAGAGAGGAAAATAG 58.077 41.667 0.00 0.00 0.00 1.73
1618 1632 5.163258 ACCACATAGCAGAGAGGAAAATAGG 60.163 44.000 0.00 0.00 0.00 2.57
1619 1633 5.163258 CCACATAGCAGAGAGGAAAATAGGT 60.163 44.000 0.00 0.00 0.00 3.08
1620 1634 6.352516 CACATAGCAGAGAGGAAAATAGGTT 58.647 40.000 0.00 0.00 0.00 3.50
1621 1635 6.825721 CACATAGCAGAGAGGAAAATAGGTTT 59.174 38.462 0.00 0.00 0.00 3.27
1622 1636 6.825721 ACATAGCAGAGAGGAAAATAGGTTTG 59.174 38.462 0.00 0.00 0.00 2.93
1623 1637 5.505181 AGCAGAGAGGAAAATAGGTTTGA 57.495 39.130 0.00 0.00 0.00 2.69
1624 1638 5.249420 AGCAGAGAGGAAAATAGGTTTGAC 58.751 41.667 0.00 0.00 0.00 3.18
1625 1639 4.093556 GCAGAGAGGAAAATAGGTTTGACG 59.906 45.833 0.00 0.00 0.00 4.35
1626 1640 4.093556 CAGAGAGGAAAATAGGTTTGACGC 59.906 45.833 0.00 0.00 0.00 5.19
1627 1641 3.344515 AGAGGAAAATAGGTTTGACGCC 58.655 45.455 0.00 0.00 0.00 5.68
1628 1642 3.009143 AGAGGAAAATAGGTTTGACGCCT 59.991 43.478 0.00 0.00 40.00 5.52
1629 1643 3.344515 AGGAAAATAGGTTTGACGCCTC 58.655 45.455 0.00 0.00 37.54 4.70
1630 1644 3.009143 AGGAAAATAGGTTTGACGCCTCT 59.991 43.478 0.00 0.00 37.54 3.69
1631 1645 3.127030 GGAAAATAGGTTTGACGCCTCTG 59.873 47.826 0.00 0.00 37.54 3.35
1632 1646 2.403252 AATAGGTTTGACGCCTCTGG 57.597 50.000 0.00 0.00 37.54 3.86
1633 1647 1.568504 ATAGGTTTGACGCCTCTGGA 58.431 50.000 0.00 0.00 37.54 3.86
1634 1648 1.344065 TAGGTTTGACGCCTCTGGAA 58.656 50.000 0.00 0.00 37.54 3.53
1635 1649 0.693049 AGGTTTGACGCCTCTGGAAT 59.307 50.000 0.00 0.00 0.00 3.01
1636 1650 1.073923 AGGTTTGACGCCTCTGGAATT 59.926 47.619 0.00 0.00 0.00 2.17
1637 1651 2.304761 AGGTTTGACGCCTCTGGAATTA 59.695 45.455 0.00 0.00 0.00 1.40
1638 1652 3.078837 GGTTTGACGCCTCTGGAATTAA 58.921 45.455 0.00 0.00 0.00 1.40
1639 1653 3.119955 GGTTTGACGCCTCTGGAATTAAC 60.120 47.826 0.00 0.00 0.00 2.01
1640 1654 3.410631 TTGACGCCTCTGGAATTAACA 57.589 42.857 0.00 0.00 0.00 2.41
1641 1655 2.972625 TGACGCCTCTGGAATTAACAG 58.027 47.619 3.78 3.78 37.30 3.16
1642 1656 2.565391 TGACGCCTCTGGAATTAACAGA 59.435 45.455 10.79 10.79 42.31 3.41
1643 1657 3.007506 TGACGCCTCTGGAATTAACAGAA 59.992 43.478 11.98 0.00 43.74 3.02
1644 1658 4.000988 GACGCCTCTGGAATTAACAGAAA 58.999 43.478 11.98 0.00 43.74 2.52
1645 1659 4.589908 ACGCCTCTGGAATTAACAGAAAT 58.410 39.130 11.98 0.00 43.74 2.17
1646 1660 5.741011 ACGCCTCTGGAATTAACAGAAATA 58.259 37.500 11.98 0.00 43.74 1.40
1647 1661 6.357367 ACGCCTCTGGAATTAACAGAAATAT 58.643 36.000 11.98 0.00 43.74 1.28
1648 1662 7.506114 ACGCCTCTGGAATTAACAGAAATATA 58.494 34.615 11.98 0.00 43.74 0.86
1649 1663 7.441458 ACGCCTCTGGAATTAACAGAAATATAC 59.559 37.037 11.98 1.12 43.74 1.47
1650 1664 7.441157 CGCCTCTGGAATTAACAGAAATATACA 59.559 37.037 11.98 0.00 43.74 2.29
1651 1665 9.120538 GCCTCTGGAATTAACAGAAATATACAA 57.879 33.333 11.98 0.00 43.74 2.41
1659 1673 9.515020 AATTAACAGAAATATACAAATGCACGG 57.485 29.630 0.00 0.00 0.00 4.94
1660 1674 6.751514 AACAGAAATATACAAATGCACGGA 57.248 33.333 0.00 0.00 0.00 4.69
1661 1675 6.942532 ACAGAAATATACAAATGCACGGAT 57.057 33.333 0.00 0.00 0.00 4.18
1662 1676 6.728200 ACAGAAATATACAAATGCACGGATG 58.272 36.000 0.00 0.00 0.00 3.51
1663 1677 6.318648 ACAGAAATATACAAATGCACGGATGT 59.681 34.615 0.00 0.00 0.00 3.06
1677 1691 5.845985 CACGGATGTGCATATACCTTTAG 57.154 43.478 0.00 0.00 39.67 1.85
1678 1692 5.538118 CACGGATGTGCATATACCTTTAGA 58.462 41.667 0.00 0.00 39.67 2.10
1679 1693 6.166279 CACGGATGTGCATATACCTTTAGAT 58.834 40.000 0.00 0.00 39.67 1.98
1680 1694 6.650807 CACGGATGTGCATATACCTTTAGATT 59.349 38.462 0.00 0.00 39.67 2.40
1681 1695 6.874134 ACGGATGTGCATATACCTTTAGATTC 59.126 38.462 0.00 0.00 0.00 2.52
1682 1696 6.873605 CGGATGTGCATATACCTTTAGATTCA 59.126 38.462 0.00 0.00 0.00 2.57
1683 1697 7.550551 CGGATGTGCATATACCTTTAGATTCAT 59.449 37.037 0.00 0.00 0.00 2.57
1684 1698 9.890629 GGATGTGCATATACCTTTAGATTCATA 57.109 33.333 0.00 0.00 0.00 2.15
1705 1719 9.571810 TTCATATTGTCAACTTAAATCATGCAC 57.428 29.630 0.00 0.00 0.00 4.57
1706 1720 8.959548 TCATATTGTCAACTTAAATCATGCACT 58.040 29.630 0.00 0.00 0.00 4.40
1707 1721 9.577110 CATATTGTCAACTTAAATCATGCACTT 57.423 29.630 0.00 0.00 0.00 3.16
1708 1722 9.793252 ATATTGTCAACTTAAATCATGCACTTC 57.207 29.630 0.00 0.00 0.00 3.01
1709 1723 6.882610 TGTCAACTTAAATCATGCACTTCT 57.117 33.333 0.00 0.00 0.00 2.85
1710 1724 7.977789 TGTCAACTTAAATCATGCACTTCTA 57.022 32.000 0.00 0.00 0.00 2.10
1711 1725 7.806690 TGTCAACTTAAATCATGCACTTCTAC 58.193 34.615 0.00 0.00 0.00 2.59
1712 1726 7.094805 TGTCAACTTAAATCATGCACTTCTACC 60.095 37.037 0.00 0.00 0.00 3.18
1713 1727 6.939730 TCAACTTAAATCATGCACTTCTACCA 59.060 34.615 0.00 0.00 0.00 3.25
1714 1728 6.992063 ACTTAAATCATGCACTTCTACCAG 57.008 37.500 0.00 0.00 0.00 4.00
1715 1729 6.711277 ACTTAAATCATGCACTTCTACCAGA 58.289 36.000 0.00 0.00 0.00 3.86
1716 1730 7.168219 ACTTAAATCATGCACTTCTACCAGAA 58.832 34.615 0.00 0.00 32.50 3.02
1717 1731 5.886960 AAATCATGCACTTCTACCAGAAC 57.113 39.130 0.00 0.00 29.89 3.01
1718 1732 4.558226 ATCATGCACTTCTACCAGAACA 57.442 40.909 0.00 0.00 29.89 3.18
1719 1733 4.350368 TCATGCACTTCTACCAGAACAA 57.650 40.909 0.00 0.00 29.89 2.83
1720 1734 4.910195 TCATGCACTTCTACCAGAACAAT 58.090 39.130 0.00 0.00 29.89 2.71
1721 1735 6.048732 TCATGCACTTCTACCAGAACAATA 57.951 37.500 0.00 0.00 29.89 1.90
1722 1736 6.108687 TCATGCACTTCTACCAGAACAATAG 58.891 40.000 0.00 0.00 29.89 1.73
1723 1737 5.738619 TGCACTTCTACCAGAACAATAGA 57.261 39.130 0.00 0.00 29.89 1.98
1724 1738 6.299805 TGCACTTCTACCAGAACAATAGAT 57.700 37.500 0.00 0.00 29.89 1.98
1725 1739 6.711277 TGCACTTCTACCAGAACAATAGATT 58.289 36.000 0.00 0.00 29.89 2.40
1726 1740 6.595326 TGCACTTCTACCAGAACAATAGATTG 59.405 38.462 0.61 0.61 43.26 2.67
1727 1741 6.037610 GCACTTCTACCAGAACAATAGATTGG 59.962 42.308 7.16 0.00 41.96 3.16
1728 1742 7.331026 CACTTCTACCAGAACAATAGATTGGA 58.669 38.462 7.16 0.00 41.96 3.53
1729 1743 7.278868 CACTTCTACCAGAACAATAGATTGGAC 59.721 40.741 7.16 1.10 41.96 4.02
1730 1744 7.181125 ACTTCTACCAGAACAATAGATTGGACT 59.819 37.037 7.16 3.17 41.96 3.85
1731 1745 8.603898 TTCTACCAGAACAATAGATTGGACTA 57.396 34.615 7.16 0.00 41.96 2.59
1732 1746 8.783660 TCTACCAGAACAATAGATTGGACTAT 57.216 34.615 7.16 0.00 41.96 2.12
1733 1747 8.642432 TCTACCAGAACAATAGATTGGACTATG 58.358 37.037 7.16 0.00 41.96 2.23
1734 1748 6.595682 ACCAGAACAATAGATTGGACTATGG 58.404 40.000 7.16 9.33 41.96 2.74
1735 1749 5.471456 CCAGAACAATAGATTGGACTATGGC 59.529 44.000 7.16 0.00 41.96 4.40
1736 1750 5.471456 CAGAACAATAGATTGGACTATGGCC 59.529 44.000 0.00 0.00 41.96 5.36
1737 1751 5.370880 AGAACAATAGATTGGACTATGGCCT 59.629 40.000 3.32 0.00 41.96 5.19
1738 1752 5.234466 ACAATAGATTGGACTATGGCCTC 57.766 43.478 3.32 0.00 41.96 4.70
1739 1753 4.910304 ACAATAGATTGGACTATGGCCTCT 59.090 41.667 3.32 0.00 41.96 3.69
1740 1754 6.084738 ACAATAGATTGGACTATGGCCTCTA 58.915 40.000 3.32 0.00 41.96 2.43
1741 1755 6.558775 ACAATAGATTGGACTATGGCCTCTAA 59.441 38.462 3.32 0.00 41.96 2.10
1742 1756 7.238514 ACAATAGATTGGACTATGGCCTCTAAT 59.761 37.037 3.32 2.23 41.96 1.73
1743 1757 7.821134 ATAGATTGGACTATGGCCTCTAATT 57.179 36.000 3.32 0.00 32.68 1.40
1744 1758 6.120507 AGATTGGACTATGGCCTCTAATTC 57.879 41.667 3.32 0.00 0.00 2.17
1745 1759 5.608437 AGATTGGACTATGGCCTCTAATTCA 59.392 40.000 3.32 0.00 0.00 2.57
1746 1760 5.708736 TTGGACTATGGCCTCTAATTCAA 57.291 39.130 3.32 0.00 0.00 2.69
1747 1761 5.296151 TGGACTATGGCCTCTAATTCAAG 57.704 43.478 3.32 0.00 0.00 3.02
1748 1762 4.068599 GGACTATGGCCTCTAATTCAAGC 58.931 47.826 3.32 0.00 0.00 4.01
1749 1763 4.068599 GACTATGGCCTCTAATTCAAGCC 58.931 47.826 3.32 0.00 44.13 4.35
1752 1766 1.393603 GGCCTCTAATTCAAGCCACC 58.606 55.000 0.00 0.00 43.32 4.61
1753 1767 1.017387 GCCTCTAATTCAAGCCACCG 58.983 55.000 0.00 0.00 0.00 4.94
1754 1768 1.017387 CCTCTAATTCAAGCCACCGC 58.983 55.000 0.00 0.00 0.00 5.68
1755 1769 1.678728 CCTCTAATTCAAGCCACCGCA 60.679 52.381 0.00 0.00 37.52 5.69
1756 1770 2.292267 CTCTAATTCAAGCCACCGCAT 58.708 47.619 0.00 0.00 37.52 4.73
1760 1774 0.740737 ATTCAAGCCACCGCATAAGC 59.259 50.000 0.00 0.00 37.52 3.09
1896 1911 4.093850 GGAAGCGTTATATCAACGTGGTTT 59.906 41.667 10.77 2.18 44.69 3.27
1953 1968 2.047655 CCGAAAGCACGGCACCTA 60.048 61.111 4.29 0.00 46.20 3.08
2013 2028 1.306141 TCGATCCAGCAAGAGGGGT 60.306 57.895 0.00 0.00 0.00 4.95
2035 2050 4.398673 GTGAAGTAGTAGATGAGTTCCGGT 59.601 45.833 0.00 0.00 0.00 5.28
2113 2128 6.097356 CCTAAGCACTACGAAAACTATGACA 58.903 40.000 0.00 0.00 0.00 3.58
2129 2144 9.702253 AAACTATGACAGAGGATAAACTAGAGA 57.298 33.333 1.55 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 265 4.021981 CGATGGAATATGCTGACTAGACCA 60.022 45.833 0.00 0.00 0.00 4.02
266 269 5.159925 CACTCGATGGAATATGCTGACTAG 58.840 45.833 0.00 0.00 0.00 2.57
267 270 5.126396 CACTCGATGGAATATGCTGACTA 57.874 43.478 0.00 0.00 0.00 2.59
336 339 6.184789 TCCAAATAGGATTAACTGTGGTTCC 58.815 40.000 0.00 0.00 43.07 3.62
379 382 1.175983 TTTCACTTTCGCCGGGCAAT 61.176 50.000 20.71 0.00 0.00 3.56
389 392 7.897800 GTGCGCCATATAAAAATTTTCACTTTC 59.102 33.333 4.18 0.00 0.00 2.62
418 421 2.295885 GGCATGGGAGAGTTTCATGAG 58.704 52.381 6.71 0.00 40.28 2.90
445 448 6.830912 ACCTTCATATGTCTATTAGCAAGCA 58.169 36.000 1.90 0.00 0.00 3.91
495 498 8.562892 CATATGTTTTGTATCTTCTAAGCCCTG 58.437 37.037 0.00 0.00 0.00 4.45
590 594 1.945387 CAGCATGGTCTACTTCGCAT 58.055 50.000 0.00 0.00 0.00 4.73
616 620 6.073314 AGAAGTAGTAAGTACTCCAACACCA 58.927 40.000 0.00 0.00 41.50 4.17
655 659 2.398588 TGTGGTGACCTATCATCCTCC 58.601 52.381 2.11 0.00 34.76 4.30
682 686 4.840271 TGTTGAGACAGCAATCATCTCAT 58.160 39.130 4.15 0.00 46.19 2.90
750 754 0.906775 ATCTGCAAGGCATTTTGGGG 59.093 50.000 0.00 0.00 38.13 4.96
786 790 6.975772 GCATTAACAAAGTTTGTGGTAAGTGA 59.024 34.615 21.53 2.66 44.59 3.41
860 865 6.053005 TCAACATTAAGTTTCACGAACCTCT 58.947 36.000 0.00 0.00 38.74 3.69
861 866 6.295039 TCAACATTAAGTTTCACGAACCTC 57.705 37.500 0.00 0.00 38.74 3.85
862 867 6.668323 CATCAACATTAAGTTTCACGAACCT 58.332 36.000 0.00 0.00 38.74 3.50
918 925 1.133482 TCTCTCAGGATCGCCCACATA 60.133 52.381 0.00 0.00 37.41 2.29
922 929 2.121538 CGTCTCTCAGGATCGCCCA 61.122 63.158 0.00 0.00 37.41 5.36
928 935 1.205893 GCCTTTGTCGTCTCTCAGGAT 59.794 52.381 0.00 0.00 0.00 3.24
1143 1154 6.785191 AGCATAATGAAAACAATCGTCGAAT 58.215 32.000 0.00 0.00 0.00 3.34
1361 1375 5.627499 TTGTTTGCTAAGCTGGATAAGTG 57.373 39.130 0.00 0.00 0.00 3.16
1362 1376 6.209391 ACAATTGTTTGCTAAGCTGGATAAGT 59.791 34.615 4.92 0.00 36.22 2.24
1363 1377 6.624423 ACAATTGTTTGCTAAGCTGGATAAG 58.376 36.000 4.92 0.00 36.22 1.73
1364 1378 6.588719 ACAATTGTTTGCTAAGCTGGATAA 57.411 33.333 4.92 0.00 36.22 1.75
1365 1379 6.389091 CAACAATTGTTTGCTAAGCTGGATA 58.611 36.000 21.10 0.00 35.83 2.59
1366 1380 5.232463 CAACAATTGTTTGCTAAGCTGGAT 58.768 37.500 21.10 0.00 35.83 3.41
1367 1381 4.501229 CCAACAATTGTTTGCTAAGCTGGA 60.501 41.667 21.10 0.00 35.83 3.86
1368 1382 3.742369 CCAACAATTGTTTGCTAAGCTGG 59.258 43.478 21.10 12.73 35.83 4.85
1369 1383 4.445385 GTCCAACAATTGTTTGCTAAGCTG 59.555 41.667 21.10 7.54 35.83 4.24
1370 1384 4.342092 AGTCCAACAATTGTTTGCTAAGCT 59.658 37.500 21.10 9.56 35.83 3.74
1371 1385 4.620982 AGTCCAACAATTGTTTGCTAAGC 58.379 39.130 21.10 7.65 35.83 3.09
1372 1386 6.970484 ACTAGTCCAACAATTGTTTGCTAAG 58.030 36.000 21.10 16.72 35.83 2.18
1373 1387 6.952773 ACTAGTCCAACAATTGTTTGCTAA 57.047 33.333 21.10 6.66 35.83 3.09
1374 1388 7.880713 TGATACTAGTCCAACAATTGTTTGCTA 59.119 33.333 21.10 19.01 35.83 3.49
1375 1389 6.714810 TGATACTAGTCCAACAATTGTTTGCT 59.285 34.615 21.10 18.92 35.83 3.91
1376 1390 6.801862 GTGATACTAGTCCAACAATTGTTTGC 59.198 38.462 21.10 13.40 35.83 3.68
1377 1391 8.099364 AGTGATACTAGTCCAACAATTGTTTG 57.901 34.615 21.10 17.60 35.83 2.93
1378 1392 8.691661 AAGTGATACTAGTCCAACAATTGTTT 57.308 30.769 21.10 9.58 35.83 2.83
1379 1393 9.787435 TTAAGTGATACTAGTCCAACAATTGTT 57.213 29.630 18.13 18.13 39.12 2.83
1380 1394 9.787435 TTTAAGTGATACTAGTCCAACAATTGT 57.213 29.630 4.92 4.92 0.00 2.71
1384 1398 9.616156 TGTTTTTAAGTGATACTAGTCCAACAA 57.384 29.630 0.00 0.00 0.00 2.83
1385 1399 9.616156 TTGTTTTTAAGTGATACTAGTCCAACA 57.384 29.630 0.00 0.00 0.00 3.33
1397 1411 9.986833 GCAGTTTTTCATTTGTTTTTAAGTGAT 57.013 25.926 0.00 0.00 0.00 3.06
1398 1412 9.213799 AGCAGTTTTTCATTTGTTTTTAAGTGA 57.786 25.926 0.00 0.00 0.00 3.41
1399 1413 9.824534 AAGCAGTTTTTCATTTGTTTTTAAGTG 57.175 25.926 0.00 0.00 0.00 3.16
1407 1421 9.822185 AGAAATAGAAGCAGTTTTTCATTTGTT 57.178 25.926 0.00 0.00 0.00 2.83
1408 1422 9.822185 AAGAAATAGAAGCAGTTTTTCATTTGT 57.178 25.926 0.00 0.00 0.00 2.83
1411 1425 9.822185 ACAAAGAAATAGAAGCAGTTTTTCATT 57.178 25.926 0.00 0.00 0.00 2.57
1419 1433 9.944376 TGAGTATTACAAAGAAATAGAAGCAGT 57.056 29.630 0.00 0.00 0.00 4.40
1421 1435 9.719355 TGTGAGTATTACAAAGAAATAGAAGCA 57.281 29.630 0.00 0.00 0.00 3.91
1429 1443 8.739039 CCATGGAATGTGAGTATTACAAAGAAA 58.261 33.333 5.56 0.00 44.81 2.52
1430 1444 7.339212 CCCATGGAATGTGAGTATTACAAAGAA 59.661 37.037 15.22 0.00 44.81 2.52
1431 1445 6.828273 CCCATGGAATGTGAGTATTACAAAGA 59.172 38.462 15.22 0.00 44.81 2.52
1432 1446 6.603201 ACCCATGGAATGTGAGTATTACAAAG 59.397 38.462 15.22 0.00 44.81 2.77
1433 1447 6.489603 ACCCATGGAATGTGAGTATTACAAA 58.510 36.000 15.22 0.00 44.81 2.83
1434 1448 6.073447 ACCCATGGAATGTGAGTATTACAA 57.927 37.500 15.22 0.00 44.81 2.41
1435 1449 5.708736 ACCCATGGAATGTGAGTATTACA 57.291 39.130 15.22 0.00 44.81 2.41
1436 1450 6.601613 TCAAACCCATGGAATGTGAGTATTAC 59.398 38.462 15.22 0.00 44.81 1.89
1437 1451 6.726379 TCAAACCCATGGAATGTGAGTATTA 58.274 36.000 15.22 0.00 44.81 0.98
1438 1452 5.579047 TCAAACCCATGGAATGTGAGTATT 58.421 37.500 15.22 0.00 44.81 1.89
1439 1453 5.191727 TCAAACCCATGGAATGTGAGTAT 57.808 39.130 15.22 0.00 44.81 2.12
1440 1454 4.588899 CTCAAACCCATGGAATGTGAGTA 58.411 43.478 20.51 0.00 44.81 2.59
1441 1455 3.424703 CTCAAACCCATGGAATGTGAGT 58.575 45.455 20.51 5.17 44.81 3.41
1442 1456 2.165030 GCTCAAACCCATGGAATGTGAG 59.835 50.000 22.90 22.90 44.81 3.51
1443 1457 2.170166 GCTCAAACCCATGGAATGTGA 58.830 47.619 15.22 10.84 44.81 3.58
1444 1458 1.894466 TGCTCAAACCCATGGAATGTG 59.106 47.619 15.22 6.56 44.81 3.21
1445 1459 2.307496 TGCTCAAACCCATGGAATGT 57.693 45.000 15.22 0.00 44.81 2.71
1446 1460 2.101917 GGATGCTCAAACCCATGGAATG 59.898 50.000 15.22 9.16 46.21 2.67
1447 1461 2.391678 GGATGCTCAAACCCATGGAAT 58.608 47.619 15.22 0.00 0.00 3.01
1448 1462 1.619432 GGGATGCTCAAACCCATGGAA 60.619 52.381 15.22 0.00 42.81 3.53
1449 1463 0.033208 GGGATGCTCAAACCCATGGA 60.033 55.000 15.22 0.00 42.81 3.41
1450 1464 0.032813 AGGGATGCTCAAACCCATGG 60.033 55.000 4.14 4.14 45.43 3.66
1451 1465 1.064166 AGAGGGATGCTCAAACCCATG 60.064 52.381 14.53 0.00 45.43 3.66
1452 1466 1.213926 GAGAGGGATGCTCAAACCCAT 59.786 52.381 14.53 5.93 45.43 4.00
1453 1467 0.620556 GAGAGGGATGCTCAAACCCA 59.379 55.000 14.53 0.00 45.43 4.51
1454 1468 0.915364 AGAGAGGGATGCTCAAACCC 59.085 55.000 0.00 0.00 43.55 4.11
1455 1469 2.797177 AAGAGAGGGATGCTCAAACC 57.203 50.000 0.00 0.00 34.85 3.27
1456 1470 3.938334 GAGAAAGAGAGGGATGCTCAAAC 59.062 47.826 0.00 0.00 34.85 2.93
1457 1471 3.584406 TGAGAAAGAGAGGGATGCTCAAA 59.416 43.478 0.00 0.00 34.85 2.69
1458 1472 3.176411 TGAGAAAGAGAGGGATGCTCAA 58.824 45.455 0.00 0.00 34.85 3.02
1459 1473 2.825223 TGAGAAAGAGAGGGATGCTCA 58.175 47.619 0.00 0.00 34.85 4.26
1460 1474 5.743636 ATATGAGAAAGAGAGGGATGCTC 57.256 43.478 0.00 0.00 0.00 4.26
1461 1475 5.369110 ACAATATGAGAAAGAGAGGGATGCT 59.631 40.000 0.00 0.00 0.00 3.79
1462 1476 5.619220 ACAATATGAGAAAGAGAGGGATGC 58.381 41.667 0.00 0.00 0.00 3.91
1463 1477 6.229733 GGACAATATGAGAAAGAGAGGGATG 58.770 44.000 0.00 0.00 0.00 3.51
1464 1478 5.309282 GGGACAATATGAGAAAGAGAGGGAT 59.691 44.000 0.00 0.00 0.00 3.85
1465 1479 4.656112 GGGACAATATGAGAAAGAGAGGGA 59.344 45.833 0.00 0.00 0.00 4.20
1466 1480 4.657969 AGGGACAATATGAGAAAGAGAGGG 59.342 45.833 0.00 0.00 0.00 4.30
1467 1481 5.609423 CAGGGACAATATGAGAAAGAGAGG 58.391 45.833 0.00 0.00 0.00 3.69
1468 1482 5.055812 GCAGGGACAATATGAGAAAGAGAG 58.944 45.833 0.00 0.00 0.00 3.20
1469 1483 4.718774 AGCAGGGACAATATGAGAAAGAGA 59.281 41.667 0.00 0.00 0.00 3.10
1470 1484 5.033589 AGCAGGGACAATATGAGAAAGAG 57.966 43.478 0.00 0.00 0.00 2.85
1471 1485 4.471025 TGAGCAGGGACAATATGAGAAAGA 59.529 41.667 0.00 0.00 0.00 2.52
1472 1486 4.774124 TGAGCAGGGACAATATGAGAAAG 58.226 43.478 0.00 0.00 0.00 2.62
1473 1487 4.842531 TGAGCAGGGACAATATGAGAAA 57.157 40.909 0.00 0.00 0.00 2.52
1474 1488 5.378230 AATGAGCAGGGACAATATGAGAA 57.622 39.130 0.00 0.00 0.00 2.87
1475 1489 6.043590 ACATAATGAGCAGGGACAATATGAGA 59.956 38.462 0.00 0.00 35.06 3.27
1476 1490 6.236409 ACATAATGAGCAGGGACAATATGAG 58.764 40.000 0.00 0.00 35.06 2.90
1477 1491 6.191657 ACATAATGAGCAGGGACAATATGA 57.808 37.500 0.00 0.00 35.06 2.15
1478 1492 6.263842 ACAACATAATGAGCAGGGACAATATG 59.736 38.462 0.00 0.00 36.53 1.78
1479 1493 6.367983 ACAACATAATGAGCAGGGACAATAT 58.632 36.000 0.00 0.00 0.00 1.28
1480 1494 5.754782 ACAACATAATGAGCAGGGACAATA 58.245 37.500 0.00 0.00 0.00 1.90
1481 1495 4.603131 ACAACATAATGAGCAGGGACAAT 58.397 39.130 0.00 0.00 0.00 2.71
1482 1496 4.032960 ACAACATAATGAGCAGGGACAA 57.967 40.909 0.00 0.00 0.00 3.18
1483 1497 3.719268 ACAACATAATGAGCAGGGACA 57.281 42.857 0.00 0.00 0.00 4.02
1484 1498 5.009010 CCATAACAACATAATGAGCAGGGAC 59.991 44.000 0.00 0.00 0.00 4.46
1485 1499 5.104151 TCCATAACAACATAATGAGCAGGGA 60.104 40.000 0.00 0.00 0.00 4.20
1486 1500 5.132502 TCCATAACAACATAATGAGCAGGG 58.867 41.667 0.00 0.00 0.00 4.45
1487 1501 6.698008 TTCCATAACAACATAATGAGCAGG 57.302 37.500 0.00 0.00 0.00 4.85
1488 1502 9.669353 GTTATTCCATAACAACATAATGAGCAG 57.331 33.333 2.37 0.00 43.50 4.24
1502 1516 7.391148 TTTCTTGAGGCTGTTATTCCATAAC 57.609 36.000 0.00 0.44 44.13 1.89
1503 1517 8.303876 GTTTTTCTTGAGGCTGTTATTCCATAA 58.696 33.333 0.00 0.00 0.00 1.90
1504 1518 7.669722 AGTTTTTCTTGAGGCTGTTATTCCATA 59.330 33.333 0.00 0.00 0.00 2.74
1505 1519 6.494835 AGTTTTTCTTGAGGCTGTTATTCCAT 59.505 34.615 0.00 0.00 0.00 3.41
1506 1520 5.833131 AGTTTTTCTTGAGGCTGTTATTCCA 59.167 36.000 0.00 0.00 0.00 3.53
1507 1521 6.152379 CAGTTTTTCTTGAGGCTGTTATTCC 58.848 40.000 0.00 0.00 0.00 3.01
1508 1522 5.631096 GCAGTTTTTCTTGAGGCTGTTATTC 59.369 40.000 0.00 0.00 0.00 1.75
1509 1523 5.068987 TGCAGTTTTTCTTGAGGCTGTTATT 59.931 36.000 0.00 0.00 0.00 1.40
1510 1524 4.584325 TGCAGTTTTTCTTGAGGCTGTTAT 59.416 37.500 0.00 0.00 0.00 1.89
1511 1525 3.951037 TGCAGTTTTTCTTGAGGCTGTTA 59.049 39.130 0.00 0.00 0.00 2.41
1512 1526 2.760092 TGCAGTTTTTCTTGAGGCTGTT 59.240 40.909 0.00 0.00 0.00 3.16
1513 1527 2.099756 GTGCAGTTTTTCTTGAGGCTGT 59.900 45.455 0.00 0.00 0.00 4.40
1514 1528 2.544486 GGTGCAGTTTTTCTTGAGGCTG 60.544 50.000 0.00 0.00 0.00 4.85
1515 1529 1.683385 GGTGCAGTTTTTCTTGAGGCT 59.317 47.619 0.00 0.00 0.00 4.58
1516 1530 1.269778 GGGTGCAGTTTTTCTTGAGGC 60.270 52.381 0.00 0.00 0.00 4.70
1517 1531 2.310538 AGGGTGCAGTTTTTCTTGAGG 58.689 47.619 0.00 0.00 0.00 3.86
1518 1532 3.503748 CCTAGGGTGCAGTTTTTCTTGAG 59.496 47.826 0.00 0.00 0.00 3.02
1519 1533 3.137544 TCCTAGGGTGCAGTTTTTCTTGA 59.862 43.478 9.46 0.00 0.00 3.02
1520 1534 3.486383 TCCTAGGGTGCAGTTTTTCTTG 58.514 45.455 9.46 0.00 0.00 3.02
1521 1535 3.138468 ACTCCTAGGGTGCAGTTTTTCTT 59.862 43.478 9.46 0.00 0.00 2.52
1522 1536 2.711547 ACTCCTAGGGTGCAGTTTTTCT 59.288 45.455 9.46 0.00 0.00 2.52
1523 1537 3.141767 ACTCCTAGGGTGCAGTTTTTC 57.858 47.619 9.46 0.00 0.00 2.29
1524 1538 4.717279 TTACTCCTAGGGTGCAGTTTTT 57.283 40.909 9.46 0.00 0.00 1.94
1525 1539 4.717279 TTTACTCCTAGGGTGCAGTTTT 57.283 40.909 9.46 0.00 0.00 2.43
1526 1540 4.929146 ATTTACTCCTAGGGTGCAGTTT 57.071 40.909 9.46 0.00 0.00 2.66
1527 1541 4.929146 AATTTACTCCTAGGGTGCAGTT 57.071 40.909 9.46 0.00 0.00 3.16
1528 1542 4.929146 AAATTTACTCCTAGGGTGCAGT 57.071 40.909 9.46 7.52 0.00 4.40
1529 1543 7.610305 TCTTTAAAATTTACTCCTAGGGTGCAG 59.390 37.037 9.46 0.73 0.00 4.41
1530 1544 7.392393 GTCTTTAAAATTTACTCCTAGGGTGCA 59.608 37.037 9.46 0.00 0.00 4.57
1531 1545 7.148120 GGTCTTTAAAATTTACTCCTAGGGTGC 60.148 40.741 9.46 0.00 0.00 5.01
1532 1546 7.886446 TGGTCTTTAAAATTTACTCCTAGGGTG 59.114 37.037 9.46 5.02 0.00 4.61
1533 1547 7.886970 GTGGTCTTTAAAATTTACTCCTAGGGT 59.113 37.037 9.46 8.50 0.00 4.34
1534 1548 7.886446 TGTGGTCTTTAAAATTTACTCCTAGGG 59.114 37.037 9.46 2.03 0.00 3.53
1535 1549 8.857694 TGTGGTCTTTAAAATTTACTCCTAGG 57.142 34.615 0.82 0.82 0.00 3.02
1545 1559 9.476202 GCAGTCTTTTATGTGGTCTTTAAAATT 57.524 29.630 0.00 0.00 0.00 1.82
1546 1560 8.637986 TGCAGTCTTTTATGTGGTCTTTAAAAT 58.362 29.630 0.00 0.00 0.00 1.82
1547 1561 7.918562 GTGCAGTCTTTTATGTGGTCTTTAAAA 59.081 33.333 0.00 0.00 0.00 1.52
1548 1562 7.284489 AGTGCAGTCTTTTATGTGGTCTTTAAA 59.716 33.333 0.00 0.00 0.00 1.52
1549 1563 6.770785 AGTGCAGTCTTTTATGTGGTCTTTAA 59.229 34.615 0.00 0.00 0.00 1.52
1550 1564 6.296026 AGTGCAGTCTTTTATGTGGTCTTTA 58.704 36.000 0.00 0.00 0.00 1.85
1551 1565 5.133221 AGTGCAGTCTTTTATGTGGTCTTT 58.867 37.500 0.00 0.00 0.00 2.52
1552 1566 4.718961 AGTGCAGTCTTTTATGTGGTCTT 58.281 39.130 0.00 0.00 0.00 3.01
1553 1567 4.040952 AGAGTGCAGTCTTTTATGTGGTCT 59.959 41.667 18.63 0.00 0.00 3.85
1554 1568 4.153117 CAGAGTGCAGTCTTTTATGTGGTC 59.847 45.833 21.67 0.00 0.00 4.02
1555 1569 4.067896 CAGAGTGCAGTCTTTTATGTGGT 58.932 43.478 21.67 0.00 0.00 4.16
1556 1570 3.438087 CCAGAGTGCAGTCTTTTATGTGG 59.562 47.826 21.67 14.40 0.00 4.17
1557 1571 3.438087 CCCAGAGTGCAGTCTTTTATGTG 59.562 47.826 21.67 9.29 0.00 3.21
1558 1572 3.327757 TCCCAGAGTGCAGTCTTTTATGT 59.672 43.478 21.67 0.00 0.00 2.29
1559 1573 3.937706 CTCCCAGAGTGCAGTCTTTTATG 59.062 47.826 21.67 10.71 0.00 1.90
1560 1574 3.584848 ACTCCCAGAGTGCAGTCTTTTAT 59.415 43.478 21.67 3.97 41.76 1.40
1561 1575 2.972713 ACTCCCAGAGTGCAGTCTTTTA 59.027 45.455 21.67 8.57 41.76 1.52
1562 1576 1.771255 ACTCCCAGAGTGCAGTCTTTT 59.229 47.619 21.67 0.00 41.76 2.27
1563 1577 1.428869 ACTCCCAGAGTGCAGTCTTT 58.571 50.000 21.67 0.00 41.76 2.52
1564 1578 2.310779 TACTCCCAGAGTGCAGTCTT 57.689 50.000 21.67 9.49 43.30 3.01
1565 1579 2.310779 TTACTCCCAGAGTGCAGTCT 57.689 50.000 18.63 18.63 43.30 3.24
1566 1580 3.618690 AATTACTCCCAGAGTGCAGTC 57.381 47.619 13.97 13.97 43.30 3.51
1567 1581 4.373156 AAAATTACTCCCAGAGTGCAGT 57.627 40.909 7.51 0.00 43.30 4.40
1568 1582 6.817765 TTAAAAATTACTCCCAGAGTGCAG 57.182 37.500 7.51 0.00 43.30 4.41
1569 1583 7.001674 TCTTTAAAAATTACTCCCAGAGTGCA 58.998 34.615 7.51 0.00 43.30 4.57
1570 1584 7.306213 GTCTTTAAAAATTACTCCCAGAGTGC 58.694 38.462 7.51 0.00 43.30 4.40
1571 1585 7.447238 TGGTCTTTAAAAATTACTCCCAGAGTG 59.553 37.037 7.51 0.00 43.30 3.51
1572 1586 7.447545 GTGGTCTTTAAAAATTACTCCCAGAGT 59.552 37.037 2.38 2.38 45.54 3.24
1573 1587 7.447238 TGTGGTCTTTAAAAATTACTCCCAGAG 59.553 37.037 0.00 0.00 35.52 3.35
1574 1588 7.291566 TGTGGTCTTTAAAAATTACTCCCAGA 58.708 34.615 0.00 0.00 0.00 3.86
1575 1589 7.519032 TGTGGTCTTTAAAAATTACTCCCAG 57.481 36.000 0.00 0.00 0.00 4.45
1576 1590 9.238368 CTATGTGGTCTTTAAAAATTACTCCCA 57.762 33.333 0.00 0.00 0.00 4.37
1577 1591 8.188799 GCTATGTGGTCTTTAAAAATTACTCCC 58.811 37.037 0.00 0.00 0.00 4.30
1578 1592 8.736244 TGCTATGTGGTCTTTAAAAATTACTCC 58.264 33.333 0.00 0.00 0.00 3.85
1579 1593 9.774742 CTGCTATGTGGTCTTTAAAAATTACTC 57.225 33.333 0.00 0.00 0.00 2.59
1580 1594 9.515226 TCTGCTATGTGGTCTTTAAAAATTACT 57.485 29.630 0.00 0.00 0.00 2.24
1581 1595 9.774742 CTCTGCTATGTGGTCTTTAAAAATTAC 57.225 33.333 0.00 0.00 0.00 1.89
1582 1596 9.733556 TCTCTGCTATGTGGTCTTTAAAAATTA 57.266 29.630 0.00 0.00 0.00 1.40
1583 1597 8.635765 TCTCTGCTATGTGGTCTTTAAAAATT 57.364 30.769 0.00 0.00 0.00 1.82
1584 1598 7.337942 CCTCTCTGCTATGTGGTCTTTAAAAAT 59.662 37.037 0.00 0.00 0.00 1.82
1585 1599 6.655003 CCTCTCTGCTATGTGGTCTTTAAAAA 59.345 38.462 0.00 0.00 0.00 1.94
1586 1600 6.013725 TCCTCTCTGCTATGTGGTCTTTAAAA 60.014 38.462 0.00 0.00 0.00 1.52
1587 1601 5.483937 TCCTCTCTGCTATGTGGTCTTTAAA 59.516 40.000 0.00 0.00 0.00 1.52
1588 1602 5.023452 TCCTCTCTGCTATGTGGTCTTTAA 58.977 41.667 0.00 0.00 0.00 1.52
1589 1603 4.610333 TCCTCTCTGCTATGTGGTCTTTA 58.390 43.478 0.00 0.00 0.00 1.85
1590 1604 3.445008 TCCTCTCTGCTATGTGGTCTTT 58.555 45.455 0.00 0.00 0.00 2.52
1591 1605 3.107402 TCCTCTCTGCTATGTGGTCTT 57.893 47.619 0.00 0.00 0.00 3.01
1592 1606 2.836636 TCCTCTCTGCTATGTGGTCT 57.163 50.000 0.00 0.00 0.00 3.85
1593 1607 3.895232 TTTCCTCTCTGCTATGTGGTC 57.105 47.619 0.00 0.00 0.00 4.02
1594 1608 4.851639 ATTTTCCTCTCTGCTATGTGGT 57.148 40.909 0.00 0.00 0.00 4.16
1595 1609 5.163258 ACCTATTTTCCTCTCTGCTATGTGG 60.163 44.000 0.00 0.00 0.00 4.17
1596 1610 5.923204 ACCTATTTTCCTCTCTGCTATGTG 58.077 41.667 0.00 0.00 0.00 3.21
1597 1611 6.567602 AACCTATTTTCCTCTCTGCTATGT 57.432 37.500 0.00 0.00 0.00 2.29
1598 1612 7.011857 GTCAAACCTATTTTCCTCTCTGCTATG 59.988 40.741 0.00 0.00 0.00 2.23
1599 1613 7.051000 GTCAAACCTATTTTCCTCTCTGCTAT 58.949 38.462 0.00 0.00 0.00 2.97
1600 1614 6.407202 GTCAAACCTATTTTCCTCTCTGCTA 58.593 40.000 0.00 0.00 0.00 3.49
1601 1615 5.249420 GTCAAACCTATTTTCCTCTCTGCT 58.751 41.667 0.00 0.00 0.00 4.24
1602 1616 4.093556 CGTCAAACCTATTTTCCTCTCTGC 59.906 45.833 0.00 0.00 0.00 4.26
1603 1617 4.093556 GCGTCAAACCTATTTTCCTCTCTG 59.906 45.833 0.00 0.00 0.00 3.35
1604 1618 4.254492 GCGTCAAACCTATTTTCCTCTCT 58.746 43.478 0.00 0.00 0.00 3.10
1605 1619 3.374367 GGCGTCAAACCTATTTTCCTCTC 59.626 47.826 0.00 0.00 0.00 3.20
1606 1620 3.009143 AGGCGTCAAACCTATTTTCCTCT 59.991 43.478 0.00 0.00 35.10 3.69
1607 1621 3.344515 AGGCGTCAAACCTATTTTCCTC 58.655 45.455 0.00 0.00 35.10 3.71
1608 1622 3.009143 AGAGGCGTCAAACCTATTTTCCT 59.991 43.478 9.41 0.00 37.77 3.36
1609 1623 3.127030 CAGAGGCGTCAAACCTATTTTCC 59.873 47.826 9.41 0.00 37.77 3.13
1610 1624 3.127030 CCAGAGGCGTCAAACCTATTTTC 59.873 47.826 9.41 0.00 37.77 2.29
1611 1625 3.081804 CCAGAGGCGTCAAACCTATTTT 58.918 45.455 9.41 0.00 37.77 1.82
1612 1626 2.304761 TCCAGAGGCGTCAAACCTATTT 59.695 45.455 9.41 0.00 37.77 1.40
1613 1627 1.906574 TCCAGAGGCGTCAAACCTATT 59.093 47.619 9.41 0.00 37.77 1.73
1614 1628 1.568504 TCCAGAGGCGTCAAACCTAT 58.431 50.000 9.41 0.00 37.77 2.57
1615 1629 1.344065 TTCCAGAGGCGTCAAACCTA 58.656 50.000 9.41 0.00 37.77 3.08
1616 1630 0.693049 ATTCCAGAGGCGTCAAACCT 59.307 50.000 9.41 0.00 41.41 3.50
1617 1631 1.534729 AATTCCAGAGGCGTCAAACC 58.465 50.000 9.41 0.00 0.00 3.27
1618 1632 3.500680 TGTTAATTCCAGAGGCGTCAAAC 59.499 43.478 9.41 2.51 0.00 2.93
1619 1633 3.745799 TGTTAATTCCAGAGGCGTCAAA 58.254 40.909 9.41 0.51 0.00 2.69
1620 1634 3.007506 TCTGTTAATTCCAGAGGCGTCAA 59.992 43.478 9.41 0.00 34.12 3.18
1621 1635 2.565391 TCTGTTAATTCCAGAGGCGTCA 59.435 45.455 9.41 0.00 34.12 4.35
1622 1636 3.247006 TCTGTTAATTCCAGAGGCGTC 57.753 47.619 0.00 0.00 34.12 5.19
1623 1637 3.695830 TTCTGTTAATTCCAGAGGCGT 57.304 42.857 7.55 0.00 39.91 5.68
1624 1638 6.867662 ATATTTCTGTTAATTCCAGAGGCG 57.132 37.500 7.55 0.00 39.91 5.52
1625 1639 8.677148 TGTATATTTCTGTTAATTCCAGAGGC 57.323 34.615 7.55 0.00 39.91 4.70
1633 1647 9.515020 CCGTGCATTTGTATATTTCTGTTAATT 57.485 29.630 0.00 0.00 0.00 1.40
1634 1648 8.898761 TCCGTGCATTTGTATATTTCTGTTAAT 58.101 29.630 0.00 0.00 0.00 1.40
1635 1649 8.270080 TCCGTGCATTTGTATATTTCTGTTAA 57.730 30.769 0.00 0.00 0.00 2.01
1636 1650 7.851387 TCCGTGCATTTGTATATTTCTGTTA 57.149 32.000 0.00 0.00 0.00 2.41
1637 1651 6.751514 TCCGTGCATTTGTATATTTCTGTT 57.248 33.333 0.00 0.00 0.00 3.16
1638 1652 6.318648 ACATCCGTGCATTTGTATATTTCTGT 59.681 34.615 0.00 0.00 0.00 3.41
1639 1653 6.634035 CACATCCGTGCATTTGTATATTTCTG 59.366 38.462 0.00 0.00 36.06 3.02
1640 1654 6.728200 CACATCCGTGCATTTGTATATTTCT 58.272 36.000 0.00 0.00 36.06 2.52
1641 1655 6.974677 CACATCCGTGCATTTGTATATTTC 57.025 37.500 0.00 0.00 36.06 2.17
1655 1669 5.538118 TCTAAAGGTATATGCACATCCGTG 58.462 41.667 0.00 0.00 46.56 4.94
1656 1670 5.801531 TCTAAAGGTATATGCACATCCGT 57.198 39.130 0.00 0.00 0.00 4.69
1657 1671 6.873605 TGAATCTAAAGGTATATGCACATCCG 59.126 38.462 0.00 0.00 0.00 4.18
1658 1672 8.798859 ATGAATCTAAAGGTATATGCACATCC 57.201 34.615 0.00 0.00 0.00 3.51
1679 1693 9.571810 GTGCATGATTTAAGTTGACAATATGAA 57.428 29.630 0.00 0.00 0.00 2.57
1680 1694 8.959548 AGTGCATGATTTAAGTTGACAATATGA 58.040 29.630 0.00 0.00 0.00 2.15
1681 1695 9.577110 AAGTGCATGATTTAAGTTGACAATATG 57.423 29.630 0.00 0.00 0.00 1.78
1682 1696 9.793252 GAAGTGCATGATTTAAGTTGACAATAT 57.207 29.630 0.00 0.00 0.00 1.28
1683 1697 9.013229 AGAAGTGCATGATTTAAGTTGACAATA 57.987 29.630 0.00 0.00 0.00 1.90
1684 1698 7.889469 AGAAGTGCATGATTTAAGTTGACAAT 58.111 30.769 0.00 0.00 0.00 2.71
1685 1699 7.275888 AGAAGTGCATGATTTAAGTTGACAA 57.724 32.000 0.00 0.00 0.00 3.18
1686 1700 6.882610 AGAAGTGCATGATTTAAGTTGACA 57.117 33.333 0.00 0.00 0.00 3.58
1687 1701 7.094805 TGGTAGAAGTGCATGATTTAAGTTGAC 60.095 37.037 0.00 0.00 0.00 3.18
1688 1702 6.939730 TGGTAGAAGTGCATGATTTAAGTTGA 59.060 34.615 0.00 0.00 0.00 3.18
1689 1703 7.119699 TCTGGTAGAAGTGCATGATTTAAGTTG 59.880 37.037 0.00 0.00 0.00 3.16
1690 1704 7.168219 TCTGGTAGAAGTGCATGATTTAAGTT 58.832 34.615 0.00 0.00 0.00 2.66
1691 1705 6.711277 TCTGGTAGAAGTGCATGATTTAAGT 58.289 36.000 0.00 0.00 0.00 2.24
1692 1706 7.119699 TGTTCTGGTAGAAGTGCATGATTTAAG 59.880 37.037 0.00 0.00 34.42 1.85
1693 1707 6.939730 TGTTCTGGTAGAAGTGCATGATTTAA 59.060 34.615 0.00 0.00 34.42 1.52
1694 1708 6.472016 TGTTCTGGTAGAAGTGCATGATTTA 58.528 36.000 0.00 0.00 34.42 1.40
1695 1709 5.316167 TGTTCTGGTAGAAGTGCATGATTT 58.684 37.500 0.00 0.00 34.42 2.17
1696 1710 4.910195 TGTTCTGGTAGAAGTGCATGATT 58.090 39.130 0.00 0.00 34.42 2.57
1697 1711 4.558226 TGTTCTGGTAGAAGTGCATGAT 57.442 40.909 0.00 0.00 34.42 2.45
1698 1712 4.350368 TTGTTCTGGTAGAAGTGCATGA 57.650 40.909 0.00 0.00 34.42 3.07
1699 1713 6.108687 TCTATTGTTCTGGTAGAAGTGCATG 58.891 40.000 0.00 0.00 34.42 4.06
1700 1714 6.299805 TCTATTGTTCTGGTAGAAGTGCAT 57.700 37.500 0.00 0.00 34.42 3.96
1701 1715 5.738619 TCTATTGTTCTGGTAGAAGTGCA 57.261 39.130 0.00 0.00 34.42 4.57
1702 1716 6.037610 CCAATCTATTGTTCTGGTAGAAGTGC 59.962 42.308 2.25 0.00 34.42 4.40
1703 1717 7.278868 GTCCAATCTATTGTTCTGGTAGAAGTG 59.721 40.741 2.25 0.00 34.42 3.16
1704 1718 7.181125 AGTCCAATCTATTGTTCTGGTAGAAGT 59.819 37.037 2.25 0.00 34.42 3.01
1705 1719 7.560368 AGTCCAATCTATTGTTCTGGTAGAAG 58.440 38.462 2.25 0.00 34.42 2.85
1706 1720 7.496346 AGTCCAATCTATTGTTCTGGTAGAA 57.504 36.000 2.25 0.00 36.06 2.10
1707 1721 8.642432 CATAGTCCAATCTATTGTTCTGGTAGA 58.358 37.037 2.25 0.00 36.06 2.59
1708 1722 7.875041 CCATAGTCCAATCTATTGTTCTGGTAG 59.125 40.741 2.25 0.00 36.06 3.18
1709 1723 7.689313 GCCATAGTCCAATCTATTGTTCTGGTA 60.689 40.741 2.25 0.00 36.06 3.25
1710 1724 6.595682 CCATAGTCCAATCTATTGTTCTGGT 58.404 40.000 2.25 0.00 36.06 4.00
1711 1725 5.471456 GCCATAGTCCAATCTATTGTTCTGG 59.529 44.000 2.25 3.40 36.06 3.86
1712 1726 5.471456 GGCCATAGTCCAATCTATTGTTCTG 59.529 44.000 0.00 0.00 36.06 3.02
1713 1727 5.370880 AGGCCATAGTCCAATCTATTGTTCT 59.629 40.000 5.01 3.04 36.06 3.01
1714 1728 5.625150 AGGCCATAGTCCAATCTATTGTTC 58.375 41.667 5.01 0.00 36.06 3.18
1715 1729 5.370880 AGAGGCCATAGTCCAATCTATTGTT 59.629 40.000 5.01 0.00 36.06 2.83
1716 1730 4.910304 AGAGGCCATAGTCCAATCTATTGT 59.090 41.667 5.01 0.00 36.06 2.71
1717 1731 5.495926 AGAGGCCATAGTCCAATCTATTG 57.504 43.478 5.01 0.00 37.52 1.90
1718 1732 7.821134 ATTAGAGGCCATAGTCCAATCTATT 57.179 36.000 5.01 0.00 0.00 1.73
1719 1733 7.459125 TGAATTAGAGGCCATAGTCCAATCTAT 59.541 37.037 5.01 0.00 0.00 1.98
1720 1734 6.787458 TGAATTAGAGGCCATAGTCCAATCTA 59.213 38.462 5.01 0.00 0.00 1.98
1721 1735 5.608437 TGAATTAGAGGCCATAGTCCAATCT 59.392 40.000 5.01 0.00 0.00 2.40
1722 1736 5.869579 TGAATTAGAGGCCATAGTCCAATC 58.130 41.667 5.01 0.00 0.00 2.67
1723 1737 5.912149 TGAATTAGAGGCCATAGTCCAAT 57.088 39.130 5.01 0.00 0.00 3.16
1724 1738 5.684704 CTTGAATTAGAGGCCATAGTCCAA 58.315 41.667 5.01 0.00 0.00 3.53
1725 1739 4.444876 GCTTGAATTAGAGGCCATAGTCCA 60.445 45.833 5.01 0.00 0.00 4.02
1726 1740 4.068599 GCTTGAATTAGAGGCCATAGTCC 58.931 47.826 5.01 0.00 0.00 3.85
1727 1741 4.068599 GGCTTGAATTAGAGGCCATAGTC 58.931 47.826 5.01 0.00 42.08 2.59
1728 1742 3.459598 TGGCTTGAATTAGAGGCCATAGT 59.540 43.478 5.01 0.00 46.35 2.12
1729 1743 4.090761 TGGCTTGAATTAGAGGCCATAG 57.909 45.455 5.01 0.00 46.35 2.23
1733 1747 1.393603 GGTGGCTTGAATTAGAGGCC 58.606 55.000 0.00 0.00 42.73 5.19
1734 1748 1.017387 CGGTGGCTTGAATTAGAGGC 58.983 55.000 7.04 7.04 38.78 4.70
1735 1749 1.017387 GCGGTGGCTTGAATTAGAGG 58.983 55.000 0.00 0.00 35.83 3.69
1736 1750 1.737838 TGCGGTGGCTTGAATTAGAG 58.262 50.000 0.00 0.00 40.82 2.43
1737 1751 2.418368 ATGCGGTGGCTTGAATTAGA 57.582 45.000 0.00 0.00 40.82 2.10
1738 1752 3.548818 GCTTATGCGGTGGCTTGAATTAG 60.549 47.826 0.00 0.00 40.82 1.73
1739 1753 2.357637 GCTTATGCGGTGGCTTGAATTA 59.642 45.455 0.00 0.00 40.82 1.40
1740 1754 1.134946 GCTTATGCGGTGGCTTGAATT 59.865 47.619 0.00 0.00 40.82 2.17
1741 1755 0.740737 GCTTATGCGGTGGCTTGAAT 59.259 50.000 0.00 0.00 40.82 2.57
1742 1756 0.322456 AGCTTATGCGGTGGCTTGAA 60.322 50.000 0.00 0.00 45.42 2.69
1743 1757 0.744414 GAGCTTATGCGGTGGCTTGA 60.744 55.000 0.00 0.00 45.42 3.02
1744 1758 0.745845 AGAGCTTATGCGGTGGCTTG 60.746 55.000 0.00 0.00 45.42 4.01
1745 1759 0.745845 CAGAGCTTATGCGGTGGCTT 60.746 55.000 0.00 0.00 45.42 4.35
1746 1760 1.153289 CAGAGCTTATGCGGTGGCT 60.153 57.895 0.00 0.00 45.42 4.75
1747 1761 1.026718 AACAGAGCTTATGCGGTGGC 61.027 55.000 9.16 0.00 45.42 5.01
1748 1762 0.729116 CAACAGAGCTTATGCGGTGG 59.271 55.000 9.16 0.00 45.42 4.61
1749 1763 0.729116 CCAACAGAGCTTATGCGGTG 59.271 55.000 0.00 0.00 45.42 4.94
1750 1764 0.392998 CCCAACAGAGCTTATGCGGT 60.393 55.000 0.00 0.00 45.42 5.68
1751 1765 0.107703 TCCCAACAGAGCTTATGCGG 60.108 55.000 0.00 0.00 45.42 5.69
1752 1766 1.398390 GTTCCCAACAGAGCTTATGCG 59.602 52.381 0.00 0.00 45.42 4.73
1753 1767 1.398390 CGTTCCCAACAGAGCTTATGC 59.602 52.381 0.00 0.00 40.05 3.14
1754 1768 2.699954 ACGTTCCCAACAGAGCTTATG 58.300 47.619 0.00 0.00 0.00 1.90
1755 1769 3.514309 ACTACGTTCCCAACAGAGCTTAT 59.486 43.478 0.00 0.00 0.00 1.73
1756 1770 2.895404 ACTACGTTCCCAACAGAGCTTA 59.105 45.455 0.00 0.00 0.00 3.09
1760 1774 5.929992 TGAAATTACTACGTTCCCAACAGAG 59.070 40.000 0.00 0.00 0.00 3.35
1896 1911 4.173256 TCGTGAAGACGTACGACTACATA 58.827 43.478 24.41 5.56 46.20 2.29
1971 1986 3.371063 GAGGACGTCACCGAGCCA 61.371 66.667 18.91 0.00 37.88 4.75
2013 2028 4.597004 ACCGGAACTCATCTACTACTTCA 58.403 43.478 9.46 0.00 0.00 3.02
2113 2128 4.446600 CCCGTCCTCTCTAGTTTATCCTCT 60.447 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.