Multiple sequence alignment - TraesCS3A01G123800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G123800 chr3A 100.000 5142 0 0 1 5142 100010417 100015558 0.000000e+00 9496.0
1 TraesCS3A01G123800 chr3A 89.665 358 26 4 1049 1406 243662405 243662751 3.650000e-121 446.0
2 TraesCS3A01G123800 chr3A 83.838 198 25 6 4908 5104 40842814 40842623 1.140000e-41 182.0
3 TraesCS3A01G123800 chr3D 91.798 4706 249 65 523 5142 83915848 83920502 0.000000e+00 6425.0
4 TraesCS3A01G123800 chr3D 87.212 391 28 4 43 431 193242069 193242439 4.760000e-115 425.0
5 TraesCS3A01G123800 chr3B 92.984 3278 151 33 1895 5142 132629011 132625783 0.000000e+00 4706.0
6 TraesCS3A01G123800 chr3B 92.399 2447 142 19 1899 4326 131518213 131515792 0.000000e+00 3448.0
7 TraesCS3A01G123800 chr3B 90.023 882 30 19 968 1805 132629875 132629008 0.000000e+00 1088.0
8 TraesCS3A01G123800 chr3B 92.422 607 20 6 4545 5142 131515592 131515003 0.000000e+00 843.0
9 TraesCS3A01G123800 chr3B 92.308 585 21 5 971 1534 131519071 131518490 0.000000e+00 809.0
10 TraesCS3A01G123800 chr3B 95.045 222 10 1 1616 1836 131518436 131518215 1.060000e-91 348.0
11 TraesCS3A01G123800 chr3B 82.791 430 31 25 470 861 132630311 132629887 1.370000e-90 344.0
12 TraesCS3A01G123800 chr3B 86.127 173 18 3 508 680 131579809 131579643 1.140000e-41 182.0
13 TraesCS3A01G123800 chr3B 93.878 49 3 0 927 975 131521571 131521523 1.990000e-09 75.0
14 TraesCS3A01G123800 chr2B 90.000 650 50 9 1636 2281 73147914 73147276 0.000000e+00 826.0
15 TraesCS3A01G123800 chr2B 88.667 300 30 3 1856 2153 104796564 104796267 3.780000e-96 363.0
16 TraesCS3A01G123800 chr2B 84.553 369 36 9 1787 2153 104796155 104795806 3.810000e-91 346.0
17 TraesCS3A01G123800 chr2B 86.740 181 19 2 1216 1396 73149383 73149208 4.060000e-46 196.0
18 TraesCS3A01G123800 chr6A 91.013 523 35 4 1442 1963 571222713 571222202 0.000000e+00 695.0
19 TraesCS3A01G123800 chr6A 92.222 90 7 0 1274 1363 58746187 58746098 1.500000e-25 128.0
20 TraesCS3A01G123800 chr6A 92.222 90 7 0 1274 1363 92816870 92816781 1.500000e-25 128.0
21 TraesCS3A01G123800 chr4A 90.822 523 36 4 1442 1963 10028565 10028054 0.000000e+00 689.0
22 TraesCS3A01G123800 chr4A 90.769 520 31 6 1442 1960 703784462 703784965 0.000000e+00 678.0
23 TraesCS3A01G123800 chr4A 93.069 202 13 1 1442 1642 727041057 727041258 1.400000e-75 294.0
24 TraesCS3A01G123800 chr1B 90.577 520 37 4 1442 1960 562247646 562248154 0.000000e+00 678.0
25 TraesCS3A01G123800 chr1B 92.112 393 26 4 43 432 373118789 373118399 2.710000e-152 549.0
26 TraesCS3A01G123800 chr1B 84.824 369 40 8 1787 2153 198561913 198562267 1.760000e-94 357.0
27 TraesCS3A01G123800 chr1B 89.130 92 10 0 1378 1469 76550354 76550263 1.170000e-21 115.0
28 TraesCS3A01G123800 chr1B 77.714 175 36 3 43 215 409905089 409905262 2.530000e-18 104.0
29 TraesCS3A01G123800 chr1A 89.293 523 40 6 1442 1963 417204690 417204183 4.340000e-180 641.0
30 TraesCS3A01G123800 chr1A 90.415 386 20 8 43 414 435083255 435082873 4.630000e-135 492.0
31 TraesCS3A01G123800 chr1A 100.000 28 0 0 405 432 435081993 435081966 9.000000e-03 52.8
32 TraesCS3A01G123800 chr7D 91.582 392 29 2 43 432 380925451 380925840 5.860000e-149 538.0
33 TraesCS3A01G123800 chr7D 85.780 218 27 2 4925 5141 101575502 101575288 1.440000e-55 228.0
34 TraesCS3A01G123800 chr7D 86.364 198 20 6 4908 5104 83321961 83321770 5.220000e-50 209.0
35 TraesCS3A01G123800 chr7D 80.258 233 35 9 41 270 194458720 194458496 1.150000e-36 165.0
36 TraesCS3A01G123800 chr7D 84.615 117 16 1 42 156 401044346 401044230 1.170000e-21 115.0
37 TraesCS3A01G123800 chr7A 88.736 364 28 9 1049 1412 623777170 623776820 2.840000e-117 433.0
38 TraesCS3A01G123800 chr2A 88.462 364 30 7 1049 1412 606238606 606238255 3.680000e-116 429.0
39 TraesCS3A01G123800 chr2D 86.992 369 31 8 1787 2153 628886647 628887000 2.880000e-107 399.0
40 TraesCS3A01G123800 chr2D 90.333 300 24 4 1856 2153 628886239 628886535 6.240000e-104 388.0
41 TraesCS3A01G123800 chr2D 83.333 198 26 6 4908 5104 575973939 575974130 5.290000e-40 176.0
42 TraesCS3A01G123800 chr2D 82.123 179 27 4 42 217 6735764 6735940 1.150000e-31 148.0
43 TraesCS3A01G123800 chr7B 92.574 202 13 2 1049 1250 74053949 74053750 6.510000e-74 289.0
44 TraesCS3A01G123800 chr7B 92.118 203 14 2 1048 1250 74047679 74047879 8.430000e-73 285.0
45 TraesCS3A01G123800 chr7B 91.089 202 16 2 1049 1250 42197963 42197764 6.560000e-69 272.0
46 TraesCS3A01G123800 chr7B 91.089 202 17 1 1442 1642 660137411 660137612 6.560000e-69 272.0
47 TraesCS3A01G123800 chr7B 93.478 46 3 0 5089 5134 126162095 126162140 9.240000e-08 69.4
48 TraesCS3A01G123800 chr7B 95.000 40 2 0 5098 5137 126192873 126192834 4.300000e-06 63.9
49 TraesCS3A01G123800 chr5B 92.040 201 14 2 1049 1249 538080631 538080433 1.090000e-71 281.0
50 TraesCS3A01G123800 chr5B 83.425 181 24 5 43 221 420373227 420373403 4.120000e-36 163.0
51 TraesCS3A01G123800 chr5D 87.374 198 18 6 4908 5104 9074171 9073980 2.410000e-53 220.0
52 TraesCS3A01G123800 chr1D 82.828 198 26 7 4908 5104 452252614 452252804 2.460000e-38 171.0
53 TraesCS3A01G123800 chr1D 87.755 98 8 4 234 328 149145159 149145063 1.510000e-20 111.0
54 TraesCS3A01G123800 chr4D 82.456 114 17 3 104 215 46722898 46722786 4.240000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G123800 chr3A 100010417 100015558 5141 False 9496.0 9496 100.000000 1 5142 1 chr3A.!!$F1 5141
1 TraesCS3A01G123800 chr3D 83915848 83920502 4654 False 6425.0 6425 91.798000 523 5142 1 chr3D.!!$F1 4619
2 TraesCS3A01G123800 chr3B 132625783 132630311 4528 True 2046.0 4706 88.599333 470 5142 3 chr3B.!!$R3 4672
3 TraesCS3A01G123800 chr3B 131515003 131521571 6568 True 1104.6 3448 93.210400 927 5142 5 chr3B.!!$R2 4215
4 TraesCS3A01G123800 chr2B 73147276 73149383 2107 True 511.0 826 88.370000 1216 2281 2 chr2B.!!$R1 1065
5 TraesCS3A01G123800 chr2B 104795806 104796564 758 True 354.5 363 86.610000 1787 2153 2 chr2B.!!$R2 366
6 TraesCS3A01G123800 chr6A 571222202 571222713 511 True 695.0 695 91.013000 1442 1963 1 chr6A.!!$R3 521
7 TraesCS3A01G123800 chr4A 10028054 10028565 511 True 689.0 689 90.822000 1442 1963 1 chr4A.!!$R1 521
8 TraesCS3A01G123800 chr4A 703784462 703784965 503 False 678.0 678 90.769000 1442 1960 1 chr4A.!!$F1 518
9 TraesCS3A01G123800 chr1B 562247646 562248154 508 False 678.0 678 90.577000 1442 1960 1 chr1B.!!$F3 518
10 TraesCS3A01G123800 chr1A 417204183 417204690 507 True 641.0 641 89.293000 1442 1963 1 chr1A.!!$R1 521
11 TraesCS3A01G123800 chr1A 435081966 435083255 1289 True 272.4 492 95.207500 43 432 2 chr1A.!!$R2 389
12 TraesCS3A01G123800 chr2D 628886239 628887000 761 False 393.5 399 88.662500 1787 2153 2 chr2D.!!$F3 366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 1506 0.388520 TTCTGACACGCACGGATCAG 60.389 55.0 15.63 15.63 39.99 2.90 F
1227 4716 0.036306 CCACGAGGTACCTGCCTTTT 59.964 55.0 22.10 0.00 39.34 2.27 F
1235 4724 0.108804 TACCTGCCTTTTCTCGCTCG 60.109 55.0 0.00 0.00 0.00 5.03 F
2205 6829 0.453390 GATTGAGGGGCTGCTTTTCG 59.547 55.0 0.00 0.00 0.00 3.46 F
3153 7786 0.035056 AAAGGGGAAGAGCATCGGTG 60.035 55.0 0.00 0.00 42.67 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 6500 0.319555 GCTCTGTTCCTGCACGTACA 60.320 55.000 0.00 0.00 0.00 2.90 R
2195 6819 0.453449 GCAGCTACACGAAAAGCAGC 60.453 55.000 8.58 8.58 42.72 5.25 R
2421 7051 1.003759 CATTCTTCTGCTGCATCTCGC 60.004 52.381 1.31 0.00 42.89 5.03 R
3975 8611 0.179009 TGAGGAACTTGCTGCTGCTT 60.179 50.000 17.00 2.62 41.55 3.91 R
4895 9797 1.463444 CGGACATTTTCCAACTCCGAC 59.537 52.381 0.00 0.00 46.29 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 1.029681 GTCGGTCAAAAGCAAACCCT 58.970 50.000 0.00 0.00 0.00 4.34
122 123 5.604650 CCTCTAAATCCCTGAAGTCCATACT 59.395 44.000 0.00 0.00 37.65 2.12
125 126 7.592736 TCTAAATCCCTGAAGTCCATACTCTA 58.407 38.462 0.00 0.00 33.75 2.43
184 185 7.637511 ACTCTTTTAGGAGTGGATTTGATGAT 58.362 34.615 0.00 0.00 43.89 2.45
215 216 2.730382 AGACCGGGTTTGTTGACTTTT 58.270 42.857 6.32 0.00 0.00 2.27
308 310 1.438222 GTCGGTCGTTTTCTTGCGC 60.438 57.895 0.00 0.00 0.00 6.09
309 311 2.496794 CGGTCGTTTTCTTGCGCG 60.497 61.111 0.00 0.00 0.00 6.86
332 334 2.694628 GCATGGGATCAATTGTAGGCAA 59.305 45.455 5.13 0.00 39.16 4.52
334 336 2.364632 TGGGATCAATTGTAGGCAACG 58.635 47.619 5.13 0.00 46.39 4.10
360 362 1.600023 ACGCTAGCTAGCTCTACAGG 58.400 55.000 36.02 23.66 46.85 4.00
362 364 2.104451 ACGCTAGCTAGCTCTACAGGTA 59.896 50.000 36.02 0.00 46.85 3.08
364 366 3.126171 CGCTAGCTAGCTCTACAGGTATG 59.874 52.174 36.02 16.97 46.85 2.39
365 367 3.119637 GCTAGCTAGCTCTACAGGTATGC 60.120 52.174 33.71 7.25 45.62 3.14
368 370 2.350964 GCTAGCTCTACAGGTATGCGTC 60.351 54.545 7.70 0.00 32.08 5.19
369 371 1.763968 AGCTCTACAGGTATGCGTCA 58.236 50.000 0.00 0.00 0.00 4.35
370 372 1.405821 AGCTCTACAGGTATGCGTCAC 59.594 52.381 0.00 0.00 0.00 3.67
378 393 2.603110 CAGGTATGCGTCACACATGTAC 59.397 50.000 0.00 0.00 0.00 2.90
397 412 0.526524 CGTGCCACGCAAAGGAAAAA 60.527 50.000 3.47 0.00 41.47 1.94
398 413 1.864565 GTGCCACGCAAAGGAAAAAT 58.135 45.000 0.00 0.00 41.47 1.82
399 414 2.605823 CGTGCCACGCAAAGGAAAAATA 60.606 45.455 3.47 0.00 41.47 1.40
400 415 3.584834 GTGCCACGCAAAGGAAAAATAT 58.415 40.909 0.00 0.00 41.47 1.28
401 416 4.673061 CGTGCCACGCAAAGGAAAAATATA 60.673 41.667 3.47 0.00 41.47 0.86
402 417 4.561213 GTGCCACGCAAAGGAAAAATATAC 59.439 41.667 0.00 0.00 41.47 1.47
403 418 3.789224 GCCACGCAAAGGAAAAATATACG 59.211 43.478 0.00 0.00 0.00 3.06
436 1337 2.021931 GCGCACGCACTAAGATGC 59.978 61.111 10.65 0.00 42.48 3.91
437 1338 2.703409 CGCACGCACTAAGATGCC 59.297 61.111 0.00 0.00 42.99 4.40
438 1339 2.813179 CGCACGCACTAAGATGCCC 61.813 63.158 0.00 0.00 42.99 5.36
439 1340 2.813179 GCACGCACTAAGATGCCCG 61.813 63.158 0.00 0.00 42.99 6.13
440 1341 2.173669 CACGCACTAAGATGCCCGG 61.174 63.158 0.00 0.00 42.99 5.73
441 1342 2.588877 CGCACTAAGATGCCCGGG 60.589 66.667 19.09 19.09 42.99 5.73
442 1343 2.203209 GCACTAAGATGCCCGGGG 60.203 66.667 25.28 9.31 39.86 5.73
443 1344 3.043999 GCACTAAGATGCCCGGGGT 62.044 63.158 25.28 6.54 39.86 4.95
444 1345 1.146263 CACTAAGATGCCCGGGGTC 59.854 63.158 25.28 6.94 0.00 4.46
445 1346 2.421739 CTAAGATGCCCGGGGTCG 59.578 66.667 25.28 0.00 0.00 4.79
446 1347 2.364579 TAAGATGCCCGGGGTCGT 60.365 61.111 25.28 7.74 33.95 4.34
447 1348 2.644555 CTAAGATGCCCGGGGTCGTG 62.645 65.000 25.28 0.00 33.95 4.35
449 1350 4.404098 GATGCCCGGGGTCGTGTT 62.404 66.667 25.28 0.00 33.95 3.32
450 1351 4.715523 ATGCCCGGGGTCGTGTTG 62.716 66.667 25.28 0.00 33.95 3.33
457 1358 4.309950 GGGTCGTGTTGGGCTCGT 62.310 66.667 0.00 0.00 35.78 4.18
458 1359 3.041940 GGTCGTGTTGGGCTCGTG 61.042 66.667 0.00 0.00 35.78 4.35
459 1360 3.712881 GTCGTGTTGGGCTCGTGC 61.713 66.667 0.00 0.00 35.78 5.34
460 1361 3.923864 TCGTGTTGGGCTCGTGCT 61.924 61.111 9.61 0.00 39.59 4.40
461 1362 3.414700 CGTGTTGGGCTCGTGCTC 61.415 66.667 9.61 5.81 40.87 4.26
466 1367 4.314440 TGGGCTCGTGCTCACCAC 62.314 66.667 8.18 0.00 46.08 4.16
487 1388 1.667756 GGATTTCAAACCGGCCGAAAC 60.668 52.381 30.73 10.35 31.87 2.78
502 1403 2.869192 CCGAAACAAACAAAACCATGGG 59.131 45.455 18.09 0.00 0.00 4.00
520 1421 7.763674 ACCATGGGTTTTAAATCCATCTGTGG 61.764 42.308 18.65 19.42 39.07 4.17
547 1451 2.818274 CCGGCTGCCGTCCTAAAC 60.818 66.667 35.82 0.00 46.80 2.01
561 1465 0.452122 CTAAACAAAACTCCGCGGCG 60.452 55.000 23.51 19.05 0.00 6.46
600 1504 1.078759 CCTTCTGACACGCACGGATC 61.079 60.000 0.00 0.00 0.00 3.36
602 1506 0.388520 TTCTGACACGCACGGATCAG 60.389 55.000 15.63 15.63 39.99 2.90
606 1510 0.458543 GACACGCACGGATCAGTCAT 60.459 55.000 0.00 0.00 0.00 3.06
675 1580 5.013568 TCGTCGCCATAAATAAGGAGAAA 57.986 39.130 0.00 0.00 35.47 2.52
683 1588 9.755064 CGCCATAAATAAGGAGAAAATAATACG 57.245 33.333 0.00 0.00 0.00 3.06
684 1589 9.556030 GCCATAAATAAGGAGAAAATAATACGC 57.444 33.333 0.00 0.00 0.00 4.42
702 1607 6.951256 ATACGCGTATACAATCTCGTACTA 57.049 37.500 29.34 0.00 35.65 1.82
704 1609 4.070896 CGCGTATACAATCTCGTACTACG 58.929 47.826 0.00 1.93 44.19 3.51
705 1610 4.375405 CGCGTATACAATCTCGTACTACGT 60.375 45.833 8.42 0.00 43.14 3.57
706 1611 5.164187 CGCGTATACAATCTCGTACTACGTA 60.164 44.000 8.42 0.00 43.14 3.57
707 1612 6.453003 CGCGTATACAATCTCGTACTACGTAT 60.453 42.308 8.42 1.74 43.14 3.06
708 1613 7.253321 CGCGTATACAATCTCGTACTACGTATA 60.253 40.741 8.42 0.61 43.14 1.47
709 1614 7.836969 GCGTATACAATCTCGTACTACGTATAC 59.163 40.741 8.42 10.23 43.14 1.47
713 1618 7.171447 ACAATCTCGTACTACGTATACTCAC 57.829 40.000 8.42 0.00 43.14 3.51
715 1620 8.138074 ACAATCTCGTACTACGTATACTCACTA 58.862 37.037 8.42 0.00 43.14 2.74
716 1621 8.423973 CAATCTCGTACTACGTATACTCACTAC 58.576 40.741 8.42 0.00 43.14 2.73
718 1623 7.135467 TCTCGTACTACGTATACTCACTACAG 58.865 42.308 8.42 0.00 43.14 2.74
720 1625 7.927048 TCGTACTACGTATACTCACTACAGTA 58.073 38.462 8.42 0.00 43.14 2.74
721 1626 7.856398 TCGTACTACGTATACTCACTACAGTAC 59.144 40.741 8.42 1.35 43.14 2.73
722 1627 7.149272 CGTACTACGTATACTCACTACAGTACG 60.149 44.444 18.80 18.80 42.12 3.67
746 1664 3.163832 TACGCCAGCTGTGCACAGT 62.164 57.895 39.30 26.51 45.45 3.55
750 1668 2.671177 CCAGCTGTGCACAGTACGC 61.671 63.158 39.30 29.13 45.45 4.42
758 1676 2.853210 CACAGTACGCACTTGCCG 59.147 61.111 0.00 0.00 37.91 5.69
759 1677 1.954146 CACAGTACGCACTTGCCGT 60.954 57.895 0.00 0.18 37.91 5.68
760 1678 1.663702 ACAGTACGCACTTGCCGTC 60.664 57.895 0.00 0.00 37.91 4.79
762 1680 3.475774 GTACGCACTTGCCGTCCG 61.476 66.667 0.00 0.00 37.91 4.79
784 1737 3.579302 CCCACCCCACAAGCCAGA 61.579 66.667 0.00 0.00 0.00 3.86
797 1750 3.775654 CCAGACTCACTCGCCCCC 61.776 72.222 0.00 0.00 0.00 5.40
798 1751 4.135153 CAGACTCACTCGCCCCCG 62.135 72.222 0.00 0.00 0.00 5.73
854 1807 2.742372 CCAACCCAACGGCTCTCG 60.742 66.667 0.00 0.00 45.88 4.04
895 1869 3.175240 CCGTTGCGCAGAGAGACG 61.175 66.667 21.31 21.31 0.00 4.18
908 1889 4.421479 AGACGCAACGCTCCTCCG 62.421 66.667 0.00 0.00 0.00 4.63
1226 4715 1.677552 CCACGAGGTACCTGCCTTT 59.322 57.895 22.10 0.00 39.34 3.11
1227 4716 0.036306 CCACGAGGTACCTGCCTTTT 59.964 55.000 22.10 0.00 39.34 2.27
1228 4717 1.439679 CACGAGGTACCTGCCTTTTC 58.560 55.000 22.10 1.54 39.34 2.29
1231 4720 1.736032 CGAGGTACCTGCCTTTTCTCG 60.736 57.143 22.10 9.68 39.34 4.04
1235 4724 0.108804 TACCTGCCTTTTCTCGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
1604 5621 2.289072 ACATGGTTCTGAACTCTGACGG 60.289 50.000 19.05 6.07 0.00 4.79
1613 5659 1.803366 AACTCTGACGGACGGTGGAC 61.803 60.000 0.00 0.00 0.00 4.02
1629 5675 0.526211 GGACGGATGCTTGGTTTTCC 59.474 55.000 0.00 0.00 41.14 3.13
1831 6433 3.119096 GTCCGACGCCCTTTGCTC 61.119 66.667 0.00 0.00 38.05 4.26
1835 6437 3.056328 GACGCCCTTTGCTCACCC 61.056 66.667 0.00 0.00 38.05 4.61
1836 6438 3.553095 GACGCCCTTTGCTCACCCT 62.553 63.158 0.00 0.00 38.05 4.34
1837 6439 3.058160 CGCCCTTTGCTCACCCTG 61.058 66.667 0.00 0.00 38.05 4.45
1838 6440 2.436109 GCCCTTTGCTCACCCTGA 59.564 61.111 0.00 0.00 36.87 3.86
1839 6441 1.676967 GCCCTTTGCTCACCCTGAG 60.677 63.158 0.00 0.00 46.90 3.35
1840 6442 1.763770 CCCTTTGCTCACCCTGAGT 59.236 57.895 1.37 0.00 45.94 3.41
1841 6443 0.984230 CCCTTTGCTCACCCTGAGTA 59.016 55.000 1.37 0.00 45.94 2.59
1842 6444 1.561542 CCCTTTGCTCACCCTGAGTAT 59.438 52.381 1.37 0.00 45.94 2.12
1843 6445 2.771943 CCCTTTGCTCACCCTGAGTATA 59.228 50.000 1.37 0.00 45.94 1.47
1864 6475 1.409521 CCAACAGGTTTCAGGTGGACA 60.410 52.381 0.00 0.00 0.00 4.02
1884 6498 3.809832 ACAGACGGATTGTTCTGAAACTG 59.190 43.478 5.63 0.00 36.30 3.16
1885 6499 3.809832 CAGACGGATTGTTCTGAAACTGT 59.190 43.478 0.00 0.00 36.30 3.55
1886 6500 4.273480 CAGACGGATTGTTCTGAAACTGTT 59.727 41.667 0.00 0.00 36.30 3.16
2153 6775 9.084164 CAGAGAATTTCTTGCATTAATTTCCTG 57.916 33.333 0.00 4.42 32.41 3.86
2195 6819 2.641321 TGAGCTATGGATGATTGAGGGG 59.359 50.000 0.00 0.00 0.00 4.79
2205 6829 0.453390 GATTGAGGGGCTGCTTTTCG 59.547 55.000 0.00 0.00 0.00 3.46
2251 6875 1.079057 GAAGGACGAGAACCTGGCC 60.079 63.158 0.00 0.00 37.85 5.36
2338 6968 3.199946 TCACCAATCCTTACCTGTCCATC 59.800 47.826 0.00 0.00 0.00 3.51
2340 6970 2.170607 CCAATCCTTACCTGTCCATCGT 59.829 50.000 0.00 0.00 0.00 3.73
2366 6996 1.605058 TAGGGACTCGCTGAGGCAAC 61.605 60.000 12.43 5.74 39.95 4.17
2377 7007 1.448717 GAGGCAACGAGAAGAGGCC 60.449 63.158 0.00 0.00 46.39 5.19
2413 7043 2.036475 TGAGCTCACTGAACTGGAGAAC 59.964 50.000 13.74 0.00 0.00 3.01
2421 7051 1.613925 TGAACTGGAGAACGAGGTGAG 59.386 52.381 0.00 0.00 0.00 3.51
2482 7112 2.730524 GGACCTGGAGGCTCAGCTC 61.731 68.421 17.69 8.45 39.32 4.09
2587 7217 0.391130 GAGACGCCATGCACCAGTAA 60.391 55.000 0.00 0.00 0.00 2.24
2588 7218 0.391661 AGACGCCATGCACCAGTAAG 60.392 55.000 0.00 0.00 0.00 2.34
2589 7219 1.369091 GACGCCATGCACCAGTAAGG 61.369 60.000 0.00 0.00 45.67 2.69
2628 7258 4.464947 ACCAAGAGCTGCTAGTTTCTTTT 58.535 39.130 0.15 0.00 0.00 2.27
3005 7635 4.652881 TCAGAGGACTTCAGATGCATACAT 59.347 41.667 0.00 0.00 39.98 2.29
3006 7636 5.129980 TCAGAGGACTTCAGATGCATACATT 59.870 40.000 0.00 0.00 36.35 2.71
3008 7638 6.988580 CAGAGGACTTCAGATGCATACATTAA 59.011 38.462 0.00 0.00 36.35 1.40
3015 7648 6.000246 TCAGATGCATACATTAACCTGGAA 58.000 37.500 0.00 0.00 36.35 3.53
3066 7699 6.791887 ACAATGAGTTATGTCAACACTGAG 57.208 37.500 0.00 0.00 30.14 3.35
3123 7756 4.286808 TCCATCTCCACTGATGAAAACAGA 59.713 41.667 6.12 0.00 44.71 3.41
3138 7771 7.083875 TGAAAACAGAAGTTACACTGAAAGG 57.916 36.000 14.10 0.00 35.66 3.11
3147 7780 1.140312 ACACTGAAAGGGGAAGAGCA 58.860 50.000 0.00 0.00 46.65 4.26
3153 7786 0.035056 AAAGGGGAAGAGCATCGGTG 60.035 55.000 0.00 0.00 42.67 4.94
3192 7825 2.959071 GCGATCAGAGAGCGGCAC 60.959 66.667 1.45 0.00 41.94 5.01
3336 7969 1.736681 GCAAGCCAGACAGTCTCATTC 59.263 52.381 0.00 0.00 0.00 2.67
3351 7984 1.165782 ATTCCCAAGGACCCCCTCA 59.834 57.895 0.00 0.00 43.48 3.86
3423 8056 0.105593 ACCACACAGAGCAGTCACTG 59.894 55.000 0.00 0.00 39.65 3.66
3531 8164 3.428045 GCAATGTTGATAAGTGGCTCCAC 60.428 47.826 10.96 10.96 46.50 4.02
3558 8194 0.771127 TGGAGGACCAACAAGAAGGG 59.229 55.000 0.00 0.00 43.91 3.95
3570 8206 1.026718 AAGAAGGGAATGAAGCGGCG 61.027 55.000 0.51 0.51 0.00 6.46
3572 8208 1.982073 GAAGGGAATGAAGCGGCGTG 61.982 60.000 9.37 0.00 0.00 5.34
3711 8347 5.640783 TGTTGATGAGATCACTGAATGTGTC 59.359 40.000 0.00 0.00 46.27 3.67
3748 8384 1.670406 GGTGGTGAGAGTGCTGCTG 60.670 63.158 0.00 0.00 0.00 4.41
3776 8412 2.345760 GCACACCAAGATGCAGGGG 61.346 63.158 0.00 0.00 41.65 4.79
3855 8491 2.580815 GGTAGGGGTTTCCGGTCG 59.419 66.667 0.00 0.00 41.52 4.79
3870 8506 3.157252 TCGCTGCCATCCTCTCCC 61.157 66.667 0.00 0.00 0.00 4.30
3900 8536 1.045350 TGGGAATGAGGAGAGGCTCG 61.045 60.000 9.22 0.00 0.00 5.03
3966 8602 4.440112 CGCATATACGGCTATGAGGATTCA 60.440 45.833 9.83 0.00 37.81 2.57
3969 8605 2.898729 ACGGCTATGAGGATTCAGTG 57.101 50.000 0.00 0.00 36.61 3.66
3975 8611 4.342378 GGCTATGAGGATTCAGTGTCTACA 59.658 45.833 0.00 0.00 36.61 2.74
4072 8708 6.239289 CCCTGTGTTTATTCTTTTCCATGTGT 60.239 38.462 0.00 0.00 0.00 3.72
4073 8709 6.642131 CCTGTGTTTATTCTTTTCCATGTGTG 59.358 38.462 0.00 0.00 0.00 3.82
4074 8710 7.106439 TGTGTTTATTCTTTTCCATGTGTGT 57.894 32.000 0.00 0.00 0.00 3.72
4194 8834 6.030849 TGTGAAACATTTGTGGTTAGTTTCG 58.969 36.000 0.00 0.00 45.67 3.46
4195 8835 6.031471 GTGAAACATTTGTGGTTAGTTTCGT 58.969 36.000 0.00 0.00 46.62 3.85
4196 8836 6.020995 GTGAAACATTTGTGGTTAGTTTCGTG 60.021 38.462 0.00 0.00 46.62 4.35
4197 8837 5.821516 AACATTTGTGGTTAGTTTCGTGA 57.178 34.783 0.00 0.00 0.00 4.35
4198 8838 6.385649 AACATTTGTGGTTAGTTTCGTGAT 57.614 33.333 0.00 0.00 0.00 3.06
4199 8839 5.997385 ACATTTGTGGTTAGTTTCGTGATC 58.003 37.500 0.00 0.00 0.00 2.92
4200 8840 5.529430 ACATTTGTGGTTAGTTTCGTGATCA 59.471 36.000 0.00 0.00 0.00 2.92
4201 8841 5.412526 TTTGTGGTTAGTTTCGTGATCAC 57.587 39.130 16.21 16.21 0.00 3.06
4202 8842 3.395639 TGTGGTTAGTTTCGTGATCACC 58.604 45.455 20.03 6.01 0.00 4.02
4203 8843 2.740447 GTGGTTAGTTTCGTGATCACCC 59.260 50.000 20.03 12.59 0.00 4.61
4204 8844 2.635915 TGGTTAGTTTCGTGATCACCCT 59.364 45.455 20.03 12.52 0.00 4.34
4205 8845 3.259902 GGTTAGTTTCGTGATCACCCTC 58.740 50.000 20.03 8.30 0.00 4.30
4206 8846 3.306502 GGTTAGTTTCGTGATCACCCTCA 60.307 47.826 20.03 0.00 0.00 3.86
4207 8847 4.504858 GTTAGTTTCGTGATCACCCTCAT 58.495 43.478 20.03 6.52 0.00 2.90
4375 9036 9.645059 CTCTGTCAGTAATCTCTGAAACATTTA 57.355 33.333 0.00 0.00 44.48 1.40
4414 9075 5.826554 GCAATCAGATTGGCGTGTGTACG 62.827 52.174 22.25 0.00 45.22 3.67
4532 9395 8.383175 TCTGTAACCAAAGGAGAGACAAATTAT 58.617 33.333 0.00 0.00 0.00 1.28
4603 9478 2.672996 ACATGGACTTGCGCCACC 60.673 61.111 4.18 3.45 38.44 4.61
4767 9657 0.320247 AGAGCGTGCTCCACTTGAAG 60.320 55.000 17.76 0.00 43.70 3.02
4775 9674 3.423154 CCACTTGAAGCCGCCGAC 61.423 66.667 0.00 0.00 0.00 4.79
4776 9675 3.777925 CACTTGAAGCCGCCGACG 61.778 66.667 0.00 0.00 39.67 5.12
4874 9773 1.302511 GCCCAGACATGTCACCGTT 60.303 57.895 27.02 3.53 0.00 4.44
4878 9780 1.337728 CCAGACATGTCACCGTTAGCA 60.338 52.381 27.02 0.00 0.00 3.49
4895 9797 1.521010 CACCTGATGAGAGCTGCCG 60.521 63.158 0.00 0.00 0.00 5.69
4923 9825 1.511254 GAAAATGTCCGGCGAACGC 60.511 57.895 9.30 10.81 42.52 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.213482 GCTTTTGACCGACACTACAATCTT 59.787 41.667 0.00 0.00 0.00 2.40
77 78 1.314730 GAGGGTTTGCTTTTGACCGA 58.685 50.000 0.00 0.00 34.22 4.69
95 96 3.775316 GGACTTCAGGGATTTAGAGGTGA 59.225 47.826 0.00 0.00 0.00 4.02
122 123 4.811498 TGACCGGGATTAAAGAGGATAGA 58.189 43.478 6.32 0.00 0.00 1.98
125 126 5.388599 AAATGACCGGGATTAAAGAGGAT 57.611 39.130 6.32 0.00 0.00 3.24
184 185 2.429930 CCGGTCTTCCTTGCCACA 59.570 61.111 0.00 0.00 0.00 4.17
308 310 1.881973 CTACAATTGATCCCATGCCCG 59.118 52.381 13.59 0.00 0.00 6.13
309 311 2.242043 CCTACAATTGATCCCATGCCC 58.758 52.381 13.59 0.00 0.00 5.36
314 316 2.290641 ACGTTGCCTACAATTGATCCCA 60.291 45.455 13.59 1.13 38.27 4.37
334 336 3.744198 GCTAGCTAGCGTACGGTAC 57.256 57.895 28.89 17.93 39.82 3.34
360 362 2.027569 CACGTACATGTGTGACGCATAC 59.972 50.000 17.30 6.64 40.19 2.39
362 364 1.067693 CACGTACATGTGTGACGCAT 58.932 50.000 17.30 5.69 40.19 4.73
364 366 1.129809 GCACGTACATGTGTGACGC 59.870 57.895 17.89 10.24 41.94 5.19
365 367 1.779061 GGCACGTACATGTGTGACG 59.221 57.895 17.89 17.00 41.94 4.35
368 370 1.491127 CGTGGCACGTACATGTGTG 59.509 57.895 30.56 10.28 41.94 3.82
369 371 2.314647 GCGTGGCACGTACATGTGT 61.315 57.895 36.68 0.00 44.73 3.72
370 372 1.836510 TTGCGTGGCACGTACATGTG 61.837 55.000 36.68 10.97 44.73 3.21
378 393 0.526524 TTTTTCCTTTGCGTGGCACG 60.527 50.000 33.96 33.96 45.88 5.34
386 401 4.408694 ACACGCGTATATTTTTCCTTTGC 58.591 39.130 13.44 0.00 0.00 3.68
432 1333 4.404098 AACACGACCCCGGGCATC 62.404 66.667 17.73 14.27 44.52 3.91
433 1334 4.715523 CAACACGACCCCGGGCAT 62.716 66.667 17.73 4.67 44.52 4.40
440 1341 4.309950 ACGAGCCCAACACGACCC 62.310 66.667 0.00 0.00 36.14 4.46
441 1342 3.041940 CACGAGCCCAACACGACC 61.042 66.667 0.00 0.00 36.14 4.79
442 1343 3.712881 GCACGAGCCCAACACGAC 61.713 66.667 0.00 0.00 36.14 4.34
443 1344 3.858868 GAGCACGAGCCCAACACGA 62.859 63.158 0.00 0.00 43.56 4.35
444 1345 3.414700 GAGCACGAGCCCAACACG 61.415 66.667 0.00 0.00 43.56 4.49
445 1346 2.280797 TGAGCACGAGCCCAACAC 60.281 61.111 0.00 0.00 43.56 3.32
446 1347 2.280797 GTGAGCACGAGCCCAACA 60.281 61.111 0.00 0.00 43.56 3.33
447 1348 3.050275 GGTGAGCACGAGCCCAAC 61.050 66.667 0.00 0.00 43.56 3.77
448 1349 3.555324 TGGTGAGCACGAGCCCAA 61.555 61.111 0.00 0.00 43.56 4.12
449 1350 4.314440 GTGGTGAGCACGAGCCCA 62.314 66.667 0.00 0.00 43.56 5.36
455 1356 0.948623 TGAAATCCGTGGTGAGCACG 60.949 55.000 27.94 27.94 44.67 5.34
456 1357 1.234821 TTGAAATCCGTGGTGAGCAC 58.765 50.000 4.41 4.41 0.00 4.40
457 1358 1.606668 GTTTGAAATCCGTGGTGAGCA 59.393 47.619 0.00 0.00 0.00 4.26
458 1359 1.068541 GGTTTGAAATCCGTGGTGAGC 60.069 52.381 0.00 0.00 0.00 4.26
459 1360 1.196808 CGGTTTGAAATCCGTGGTGAG 59.803 52.381 9.67 0.00 41.58 3.51
460 1361 1.231221 CGGTTTGAAATCCGTGGTGA 58.769 50.000 9.67 0.00 41.58 4.02
461 1362 0.239879 CCGGTTTGAAATCCGTGGTG 59.760 55.000 14.49 0.75 44.51 4.17
462 1363 1.520600 GCCGGTTTGAAATCCGTGGT 61.521 55.000 1.90 0.00 44.51 4.16
463 1364 1.211709 GCCGGTTTGAAATCCGTGG 59.788 57.895 1.90 0.00 44.51 4.94
464 1365 1.211709 GGCCGGTTTGAAATCCGTG 59.788 57.895 1.90 9.18 44.51 4.94
465 1366 2.329614 CGGCCGGTTTGAAATCCGT 61.330 57.895 20.10 0.00 44.51 4.69
466 1367 1.579084 TTCGGCCGGTTTGAAATCCG 61.579 55.000 27.83 4.73 45.42 4.18
467 1368 0.599060 TTTCGGCCGGTTTGAAATCC 59.401 50.000 27.83 0.00 0.00 3.01
468 1369 1.001158 TGTTTCGGCCGGTTTGAAATC 60.001 47.619 27.83 10.52 34.47 2.17
561 1465 2.591715 ACAACGTGCAGAGTGGGC 60.592 61.111 0.00 0.00 0.00 5.36
600 1504 4.157105 TGATGAGTTGGCATTGAATGACTG 59.843 41.667 12.88 0.00 39.69 3.51
602 1506 4.707030 TGATGAGTTGGCATTGAATGAC 57.293 40.909 9.76 6.73 39.32 3.06
606 1510 3.321396 TGCTTTGATGAGTTGGCATTGAA 59.679 39.130 0.00 0.00 0.00 2.69
675 1580 8.446273 AGTACGAGATTGTATACGCGTATTATT 58.554 33.333 34.24 19.79 43.54 1.40
683 1588 5.011451 ACGTAGTACGAGATTGTATACGC 57.989 43.478 28.47 0.00 46.05 4.42
722 1627 1.352156 GCACAGCTGGCGTACACTAC 61.352 60.000 19.93 0.00 0.00 2.73
725 1630 2.664851 TGCACAGCTGGCGTACAC 60.665 61.111 19.93 0.00 0.00 2.90
766 1684 4.684134 CTGGCTTGTGGGGTGGGG 62.684 72.222 0.00 0.00 0.00 4.96
767 1685 3.579302 TCTGGCTTGTGGGGTGGG 61.579 66.667 0.00 0.00 0.00 4.61
768 1686 2.282462 GTCTGGCTTGTGGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
769 1687 1.302832 GAGTCTGGCTTGTGGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
770 1688 1.770110 TGAGTCTGGCTTGTGGGGT 60.770 57.895 0.00 0.00 0.00 4.95
908 1889 2.402572 GGCTTTCTTCTGCCGGAGC 61.403 63.158 5.05 1.33 39.71 4.70
963 1944 3.448660 CCTGATGATGACTGAGGTGTGTA 59.551 47.826 0.00 0.00 0.00 2.90
1604 5621 2.100631 CAAGCATCCGTCCACCGTC 61.101 63.158 0.00 0.00 33.66 4.79
1613 5659 0.447801 CGAGGAAAACCAAGCATCCG 59.552 55.000 0.00 0.00 37.05 4.18
1629 5675 2.506061 CCTCCCCCTGCAGATCGAG 61.506 68.421 17.39 15.09 0.00 4.04
1831 6433 3.543680 CCTGTTGGTATACTCAGGGTG 57.456 52.381 22.42 8.05 42.38 4.61
1864 6475 4.073293 ACAGTTTCAGAACAATCCGTCT 57.927 40.909 0.00 0.00 38.26 4.18
1884 6498 1.792949 CTCTGTTCCTGCACGTACAAC 59.207 52.381 0.00 0.00 0.00 3.32
1885 6499 1.872237 GCTCTGTTCCTGCACGTACAA 60.872 52.381 0.00 0.00 0.00 2.41
1886 6500 0.319555 GCTCTGTTCCTGCACGTACA 60.320 55.000 0.00 0.00 0.00 2.90
2054 6671 2.254546 ACTGATTTGAGCACCGAACA 57.745 45.000 0.00 0.00 0.00 3.18
2153 6775 4.332543 TCATATGCAGATGTGACGAAAACC 59.667 41.667 20.12 0.00 0.00 3.27
2195 6819 0.453449 GCAGCTACACGAAAAGCAGC 60.453 55.000 8.58 8.58 42.72 5.25
2205 6829 3.187432 GGAGAACTTCTTTGCAGCTACAC 59.813 47.826 0.00 0.00 0.00 2.90
2319 6949 2.170607 ACGATGGACAGGTAAGGATTGG 59.829 50.000 0.00 0.00 0.00 3.16
2338 6968 1.360551 CGAGTCCCTAGCCATGACG 59.639 63.158 0.00 0.00 34.24 4.35
2340 6970 1.075970 AGCGAGTCCCTAGCCATGA 60.076 57.895 0.00 0.00 32.64 3.07
2366 6996 2.615869 CTTCTTCTTGGCCTCTTCTCG 58.384 52.381 3.32 0.00 0.00 4.04
2377 7007 2.152830 AGCTCAGCTTGCTTCTTCTTG 58.847 47.619 0.00 0.00 37.52 3.02
2413 7043 1.588403 CTGCATCTCGCTCACCTCG 60.588 63.158 0.00 0.00 43.06 4.63
2421 7051 1.003759 CATTCTTCTGCTGCATCTCGC 60.004 52.381 1.31 0.00 42.89 5.03
2482 7112 3.257561 CGCCGACGCCTCTTGATG 61.258 66.667 0.00 0.00 0.00 3.07
2587 7217 6.851836 TCTTGGTTTTATAGGATCATCCTCCT 59.148 38.462 10.40 1.29 45.66 3.69
2588 7218 7.079451 TCTTGGTTTTATAGGATCATCCTCC 57.921 40.000 10.40 4.55 45.66 4.30
2589 7219 6.652900 GCTCTTGGTTTTATAGGATCATCCTC 59.347 42.308 10.40 0.00 45.66 3.71
2628 7258 4.637534 GCACCAGCTAATCAAGATTCTTCA 59.362 41.667 0.00 0.00 37.91 3.02
2898 7528 3.495001 GCAAGTACCTGAAACTCTCACAC 59.505 47.826 0.00 0.00 0.00 3.82
3005 7635 5.083821 CAATTTCTTCCCCTTCCAGGTTAA 58.916 41.667 0.00 0.00 31.93 2.01
3006 7636 4.510205 CCAATTTCTTCCCCTTCCAGGTTA 60.510 45.833 0.00 0.00 31.93 2.85
3008 7638 2.225369 CCAATTTCTTCCCCTTCCAGGT 60.225 50.000 0.00 0.00 31.93 4.00
3015 7648 2.313041 CCCTTCTCCAATTTCTTCCCCT 59.687 50.000 0.00 0.00 0.00 4.79
3024 7657 4.453480 TGTTGAAGTCCCTTCTCCAATT 57.547 40.909 5.65 0.00 40.73 2.32
3138 7771 1.144936 CCTCACCGATGCTCTTCCC 59.855 63.158 0.00 0.00 0.00 3.97
3147 7780 3.383698 TCTAGTTTCTCCCTCACCGAT 57.616 47.619 0.00 0.00 0.00 4.18
3153 7786 4.434520 CCGATTGTTCTAGTTTCTCCCTC 58.565 47.826 0.00 0.00 0.00 4.30
3192 7825 1.559065 TTTCCCTTCCCCTGCTACGG 61.559 60.000 0.00 0.00 0.00 4.02
3336 7969 1.852626 AACTGAGGGGGTCCTTGGG 60.853 63.158 0.00 0.00 45.05 4.12
3351 7984 1.747444 ATGGAGGACTTGGTGGAACT 58.253 50.000 0.00 0.00 36.74 3.01
3394 8027 4.367023 TGTGTGGTACCTCGGCGC 62.367 66.667 14.36 0.00 0.00 6.53
3429 8062 5.726397 TGAAGCATTTCATCATCCTTTTGG 58.274 37.500 0.00 0.00 38.37 3.28
3531 8164 1.340308 TGTTGGTCCTCCATGAGCATG 60.340 52.381 3.50 3.50 43.91 4.06
3588 8224 4.776322 TCCTCGGCGGCATTGTGG 62.776 66.667 10.53 3.36 0.00 4.17
3748 8384 1.870055 CTTGGTGTGCCATGGTGAGC 61.870 60.000 14.67 7.75 45.56 4.26
3776 8412 4.081420 TCTCCTCCTTGATGTCAAAGCTAC 60.081 45.833 0.00 0.00 35.15 3.58
3855 8491 2.817056 GGAGGGAGAGGATGGCAGC 61.817 68.421 0.00 0.00 0.00 5.25
3870 8506 2.106166 CCTCATTCCCAGGATCTTGGAG 59.894 54.545 24.74 14.49 40.87 3.86
3900 8536 1.228245 TTTCCTGCCTGCACAGTCC 60.228 57.895 3.87 0.00 35.83 3.85
3947 8583 5.077564 ACACTGAATCCTCATAGCCGTATA 58.922 41.667 0.00 0.00 0.00 1.47
3966 8602 0.394192 TGCTGCTGCTTGTAGACACT 59.606 50.000 17.00 0.00 40.48 3.55
3969 8605 1.517242 ACTTGCTGCTGCTTGTAGAC 58.483 50.000 17.00 0.00 40.48 2.59
3975 8611 0.179009 TGAGGAACTTGCTGCTGCTT 60.179 50.000 17.00 2.62 41.55 3.91
4023 8659 3.684305 TGAGATTGCCTCATTTGTGTACG 59.316 43.478 0.00 0.00 46.38 3.67
4072 8708 6.502136 TCAGACAAATGTAACAAACACACA 57.498 33.333 0.00 0.00 42.09 3.72
4073 8709 7.008266 CACTTCAGACAAATGTAACAAACACAC 59.992 37.037 0.00 0.00 42.09 3.82
4074 8710 7.026562 CACTTCAGACAAATGTAACAAACACA 58.973 34.615 0.00 0.00 42.09 3.72
4375 9036 5.922053 TGATTGCTGCAGATCACTTACTAT 58.078 37.500 20.43 0.00 0.00 2.12
4532 9395 5.938125 GCTCAATGTTTACTAGGGTTCTTCA 59.062 40.000 0.00 0.00 0.00 3.02
4878 9780 1.954362 GACGGCAGCTCTCATCAGGT 61.954 60.000 0.00 0.00 0.00 4.00
4895 9797 1.463444 CGGACATTTTCCAACTCCGAC 59.537 52.381 0.00 0.00 46.29 4.79
4923 9825 4.767255 GTCGCCAGGCTCCAGGTG 62.767 72.222 10.54 4.70 34.91 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.