Multiple sequence alignment - TraesCS3A01G123600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G123600 chr3A 100.000 5267 0 0 1 5267 99626561 99621295 0.000000e+00 9727.0
1 TraesCS3A01G123600 chr3A 93.319 479 29 3 1 476 488716516 488716994 0.000000e+00 704.0
2 TraesCS3A01G123600 chr3D 95.858 3935 124 10 476 4391 83829682 83825768 0.000000e+00 6327.0
3 TraesCS3A01G123600 chr3D 82.278 395 56 12 4391 4776 552583873 552584262 3.930000e-86 329.0
4 TraesCS3A01G123600 chr3D 82.895 380 37 16 4789 5148 418774312 418774683 3.060000e-82 316.0
5 TraesCS3A01G123600 chr3B 95.448 3932 123 17 476 4393 132719760 132723649 0.000000e+00 6218.0
6 TraesCS3A01G123600 chr3B 81.360 397 57 8 4390 4776 556962941 556962552 1.840000e-79 307.0
7 TraesCS3A01G123600 chr2A 93.608 485 25 4 1 479 62119827 62120311 0.000000e+00 719.0
8 TraesCS3A01G123600 chr2A 93.711 477 28 2 1 476 416006974 416007449 0.000000e+00 713.0
9 TraesCS3A01G123600 chr2A 91.841 478 35 4 1 476 759892699 759893174 0.000000e+00 664.0
10 TraesCS3A01G123600 chr2A 81.443 388 58 11 4392 4775 46127274 46126897 6.630000e-79 305.0
11 TraesCS3A01G123600 chr2A 80.653 398 63 13 4383 4774 579442536 579442925 3.990000e-76 296.0
12 TraesCS3A01G123600 chr4D 90.605 479 39 4 1 476 502885900 502886375 9.630000e-177 630.0
13 TraesCS3A01G123600 chr4D 80.494 405 59 18 4381 4774 4140727 4141122 5.160000e-75 292.0
14 TraesCS3A01G123600 chrUn 90.698 473 42 2 1 471 71596312 71596784 3.460000e-176 628.0
15 TraesCS3A01G123600 chrUn 100.000 33 0 0 4066 4098 380817035 380817003 1.580000e-05 62.1
16 TraesCS3A01G123600 chrUn 91.304 46 2 2 4054 4098 451705454 451705498 1.580000e-05 62.1
17 TraesCS3A01G123600 chr1D 90.850 459 35 6 25 480 356146822 356147276 4.510000e-170 608.0
18 TraesCS3A01G123600 chr5A 90.789 456 35 6 21 473 290552492 290552041 2.100000e-168 603.0
19 TraesCS3A01G123600 chr5A 90.414 459 38 5 22 476 666260536 666260992 2.710000e-167 599.0
20 TraesCS3A01G123600 chr5A 84.638 345 38 11 4789 5122 12021193 12021533 3.930000e-86 329.0
21 TraesCS3A01G123600 chr5A 100.000 33 0 0 4066 4098 36052803 36052771 1.580000e-05 62.1
22 TraesCS3A01G123600 chr5A 100.000 33 0 0 4066 4098 36079572 36079540 1.580000e-05 62.1
23 TraesCS3A01G123600 chr5A 100.000 33 0 0 4066 4098 36107520 36107488 1.580000e-05 62.1
24 TraesCS3A01G123600 chr5A 100.000 33 0 0 4066 4098 36136073 36136041 1.580000e-05 62.1
25 TraesCS3A01G123600 chr2B 85.757 337 39 9 4789 5122 202289600 202289930 1.090000e-91 348.0
26 TraesCS3A01G123600 chr2D 83.421 380 47 7 4789 5155 560397936 560397560 6.530000e-89 339.0
27 TraesCS3A01G123600 chr2D 82.097 391 56 9 4392 4775 304257443 304257060 6.580000e-84 322.0
28 TraesCS3A01G123600 chr4A 83.424 368 47 10 4789 5148 513294290 513294651 3.930000e-86 329.0
29 TraesCS3A01G123600 chr4A 90.426 94 8 1 5175 5267 313643076 313642983 7.160000e-24 122.0
30 TraesCS3A01G123600 chr7D 83.198 369 48 9 4789 5151 486116313 486115953 5.090000e-85 326.0
31 TraesCS3A01G123600 chr7D 81.704 399 59 11 4391 4782 446926538 446926147 2.370000e-83 320.0
32 TraesCS3A01G123600 chr7D 82.574 373 45 12 4789 5151 446925969 446925607 1.420000e-80 311.0
33 TraesCS3A01G123600 chr7A 82.713 376 51 13 4789 5155 584358242 584357872 6.580000e-84 322.0
34 TraesCS3A01G123600 chr6A 82.097 391 56 10 4392 4773 520768293 520768678 6.580000e-84 322.0
35 TraesCS3A01G123600 chr6D 82.306 373 55 7 4789 5158 448820032 448819668 3.960000e-81 313.0
36 TraesCS3A01G123600 chr5B 81.679 393 56 11 4391 4776 590377415 590377798 3.960000e-81 313.0
37 TraesCS3A01G123600 chr5D 79.121 91 14 4 4054 4140 45259352 45259441 2.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G123600 chr3A 99621295 99626561 5266 True 9727.0 9727 100.000 1 5267 1 chr3A.!!$R1 5266
1 TraesCS3A01G123600 chr3D 83825768 83829682 3914 True 6327.0 6327 95.858 476 4391 1 chr3D.!!$R1 3915
2 TraesCS3A01G123600 chr3B 132719760 132723649 3889 False 6218.0 6218 95.448 476 4393 1 chr3B.!!$F1 3917
3 TraesCS3A01G123600 chr7D 446925607 446926538 931 True 315.5 320 82.139 4391 5151 2 chr7D.!!$R2 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 380 0.032952 GAAAACACCCTTTTCGGCCC 59.967 55.000 0.00 0.0 0.00 5.80 F
904 906 0.035458 AGTTCTTTCCTGGGCACTCG 59.965 55.000 0.00 0.0 0.00 4.18 F
965 967 0.175760 TGCTCAGTAACCAGATCGCC 59.824 55.000 0.00 0.0 0.00 5.54 F
2127 2131 1.153568 CGTCATGCAGGACATCCGT 60.154 57.895 28.84 0.0 42.08 4.69 F
3210 3214 0.104120 CGATCATGTACCGGGAGCAA 59.896 55.000 6.32 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1261 0.321298 GCTTCCAGTCGCCCTTAACA 60.321 55.0 0.0 0.0 0.00 2.41 R
2834 2838 0.179062 CTGCATTTCCGAGGAGGGAG 60.179 60.0 0.0 0.0 41.52 4.30 R
2835 2839 1.626356 CCTGCATTTCCGAGGAGGGA 61.626 60.0 0.0 0.0 39.43 4.20 R
3813 3817 0.973496 GCGGGAGGAGGAAGAAGTCT 60.973 60.0 0.0 0.0 0.00 3.24 R
5116 5333 0.033601 TGCCTTGTTGTCCAGTTGGT 60.034 50.0 0.0 0.0 36.34 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.706636 CGGGTGGCAGGAACATATG 58.293 57.895 0.00 0.00 0.00 1.78
19 20 0.180171 CGGGTGGCAGGAACATATGA 59.820 55.000 10.38 0.00 0.00 2.15
20 21 1.680338 GGGTGGCAGGAACATATGAC 58.320 55.000 10.38 3.00 0.00 3.06
21 22 1.299541 GGTGGCAGGAACATATGACG 58.700 55.000 10.38 0.00 0.00 4.35
22 23 1.299541 GTGGCAGGAACATATGACGG 58.700 55.000 10.38 1.50 0.00 4.79
23 24 0.180171 TGGCAGGAACATATGACGGG 59.820 55.000 10.38 0.00 0.00 5.28
24 25 0.468226 GGCAGGAACATATGACGGGA 59.532 55.000 10.38 0.00 0.00 5.14
25 26 1.134220 GGCAGGAACATATGACGGGAA 60.134 52.381 10.38 0.00 0.00 3.97
26 27 2.213499 GCAGGAACATATGACGGGAAG 58.787 52.381 10.38 0.00 0.00 3.46
27 28 2.838736 CAGGAACATATGACGGGAAGG 58.161 52.381 10.38 0.00 0.00 3.46
28 29 1.768870 AGGAACATATGACGGGAAGGG 59.231 52.381 10.38 0.00 0.00 3.95
29 30 1.202770 GGAACATATGACGGGAAGGGG 60.203 57.143 10.38 0.00 0.00 4.79
30 31 1.489230 GAACATATGACGGGAAGGGGT 59.511 52.381 10.38 0.00 0.00 4.95
31 32 1.591768 ACATATGACGGGAAGGGGTT 58.408 50.000 10.38 0.00 0.00 4.11
32 33 1.211949 ACATATGACGGGAAGGGGTTG 59.788 52.381 10.38 0.00 0.00 3.77
33 34 0.843984 ATATGACGGGAAGGGGTTGG 59.156 55.000 0.00 0.00 0.00 3.77
34 35 0.548197 TATGACGGGAAGGGGTTGGT 60.548 55.000 0.00 0.00 0.00 3.67
35 36 2.033602 GACGGGAAGGGGTTGGTG 59.966 66.667 0.00 0.00 0.00 4.17
36 37 3.562732 GACGGGAAGGGGTTGGTGG 62.563 68.421 0.00 0.00 0.00 4.61
37 38 4.360405 CGGGAAGGGGTTGGTGGG 62.360 72.222 0.00 0.00 0.00 4.61
38 39 2.861974 GGGAAGGGGTTGGTGGGA 60.862 66.667 0.00 0.00 0.00 4.37
39 40 2.475172 GGGAAGGGGTTGGTGGGAA 61.475 63.158 0.00 0.00 0.00 3.97
40 41 1.544703 GGAAGGGGTTGGTGGGAAA 59.455 57.895 0.00 0.00 0.00 3.13
41 42 0.830444 GGAAGGGGTTGGTGGGAAAC 60.830 60.000 0.00 0.00 0.00 2.78
42 43 1.152631 AAGGGGTTGGTGGGAAACG 60.153 57.895 0.00 0.00 0.00 3.60
43 44 2.599281 GGGGTTGGTGGGAAACGG 60.599 66.667 0.00 0.00 0.00 4.44
44 45 2.599281 GGGTTGGTGGGAAACGGG 60.599 66.667 0.00 0.00 0.00 5.28
45 46 2.196502 GGTTGGTGGGAAACGGGT 59.803 61.111 0.00 0.00 0.00 5.28
46 47 2.197605 GGTTGGTGGGAAACGGGTG 61.198 63.158 0.00 0.00 0.00 4.61
47 48 2.196229 TTGGTGGGAAACGGGTGG 59.804 61.111 0.00 0.00 0.00 4.61
48 49 4.589675 TGGTGGGAAACGGGTGGC 62.590 66.667 0.00 0.00 0.00 5.01
53 54 4.646877 GGAAACGGGTGGCGGGAA 62.647 66.667 0.00 0.00 0.00 3.97
54 55 2.595172 GAAACGGGTGGCGGGAAA 60.595 61.111 0.00 0.00 0.00 3.13
55 56 2.123812 AAACGGGTGGCGGGAAAA 60.124 55.556 0.00 0.00 0.00 2.29
56 57 1.529152 GAAACGGGTGGCGGGAAAAT 61.529 55.000 0.00 0.00 0.00 1.82
57 58 0.251253 AAACGGGTGGCGGGAAAATA 60.251 50.000 0.00 0.00 0.00 1.40
58 59 0.033894 AACGGGTGGCGGGAAAATAT 60.034 50.000 0.00 0.00 0.00 1.28
59 60 0.033894 ACGGGTGGCGGGAAAATATT 60.034 50.000 0.00 0.00 0.00 1.28
60 61 0.383949 CGGGTGGCGGGAAAATATTG 59.616 55.000 0.00 0.00 0.00 1.90
61 62 1.770294 GGGTGGCGGGAAAATATTGA 58.230 50.000 0.00 0.00 0.00 2.57
62 63 1.681264 GGGTGGCGGGAAAATATTGAG 59.319 52.381 0.00 0.00 0.00 3.02
63 64 1.681264 GGTGGCGGGAAAATATTGAGG 59.319 52.381 0.00 0.00 0.00 3.86
64 65 2.650322 GTGGCGGGAAAATATTGAGGA 58.350 47.619 0.00 0.00 0.00 3.71
65 66 3.020984 GTGGCGGGAAAATATTGAGGAA 58.979 45.455 0.00 0.00 0.00 3.36
66 67 3.445805 GTGGCGGGAAAATATTGAGGAAA 59.554 43.478 0.00 0.00 0.00 3.13
67 68 4.081917 GTGGCGGGAAAATATTGAGGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
68 69 4.528596 TGGCGGGAAAATATTGAGGAAAAA 59.471 37.500 0.00 0.00 0.00 1.94
69 70 5.109210 GGCGGGAAAATATTGAGGAAAAAG 58.891 41.667 0.00 0.00 0.00 2.27
70 71 5.109210 GCGGGAAAATATTGAGGAAAAAGG 58.891 41.667 0.00 0.00 0.00 3.11
71 72 5.660460 CGGGAAAATATTGAGGAAAAAGGG 58.340 41.667 0.00 0.00 0.00 3.95
72 73 5.186992 CGGGAAAATATTGAGGAAAAAGGGT 59.813 40.000 0.00 0.00 0.00 4.34
73 74 6.295632 CGGGAAAATATTGAGGAAAAAGGGTT 60.296 38.462 0.00 0.00 0.00 4.11
74 75 6.878923 GGGAAAATATTGAGGAAAAAGGGTTG 59.121 38.462 0.00 0.00 0.00 3.77
75 76 6.371548 GGAAAATATTGAGGAAAAAGGGTTGC 59.628 38.462 0.00 0.00 0.00 4.17
76 77 4.718940 ATATTGAGGAAAAAGGGTTGCG 57.281 40.909 0.00 0.00 0.00 4.85
77 78 0.387565 TTGAGGAAAAAGGGTTGCGC 59.612 50.000 0.00 0.00 0.00 6.09
78 79 1.081442 GAGGAAAAAGGGTTGCGCG 60.081 57.895 0.00 0.00 0.00 6.86
79 80 1.512156 GAGGAAAAAGGGTTGCGCGA 61.512 55.000 12.10 0.00 0.00 5.87
80 81 1.104577 AGGAAAAAGGGTTGCGCGAA 61.105 50.000 12.10 0.00 0.00 4.70
81 82 0.249114 GGAAAAAGGGTTGCGCGAAA 60.249 50.000 12.10 0.74 0.00 3.46
82 83 1.562017 GAAAAAGGGTTGCGCGAAAA 58.438 45.000 12.10 0.00 0.00 2.29
83 84 2.131972 GAAAAAGGGTTGCGCGAAAAT 58.868 42.857 12.10 0.00 0.00 1.82
84 85 3.310246 GAAAAAGGGTTGCGCGAAAATA 58.690 40.909 12.10 0.00 0.00 1.40
85 86 3.586100 AAAAGGGTTGCGCGAAAATAT 57.414 38.095 12.10 0.00 0.00 1.28
86 87 4.705337 AAAAGGGTTGCGCGAAAATATA 57.295 36.364 12.10 0.00 0.00 0.86
87 88 4.911514 AAAGGGTTGCGCGAAAATATAT 57.088 36.364 12.10 0.00 0.00 0.86
88 89 4.911514 AAGGGTTGCGCGAAAATATATT 57.088 36.364 12.10 0.00 0.00 1.28
89 90 4.911514 AGGGTTGCGCGAAAATATATTT 57.088 36.364 12.10 4.81 0.00 1.40
90 91 5.257082 AGGGTTGCGCGAAAATATATTTT 57.743 34.783 20.77 20.77 42.24 1.82
91 92 5.656480 AGGGTTGCGCGAAAATATATTTTT 58.344 33.333 21.39 8.30 39.86 1.94
114 115 6.713762 TTTAATGTCTAAGATGGGCAATGG 57.286 37.500 0.00 0.00 0.00 3.16
115 116 3.959495 ATGTCTAAGATGGGCAATGGT 57.041 42.857 0.00 0.00 0.00 3.55
116 117 3.737559 TGTCTAAGATGGGCAATGGTT 57.262 42.857 0.00 0.00 0.00 3.67
117 118 3.355378 TGTCTAAGATGGGCAATGGTTG 58.645 45.455 0.00 0.00 0.00 3.77
166 167 3.717350 AAAAATCGCTTCGGTCTAACG 57.283 42.857 0.00 0.00 0.00 3.18
167 168 2.358939 AAATCGCTTCGGTCTAACGT 57.641 45.000 0.00 0.00 34.94 3.99
168 169 3.492421 AAATCGCTTCGGTCTAACGTA 57.508 42.857 0.00 0.00 34.94 3.57
169 170 3.492421 AATCGCTTCGGTCTAACGTAA 57.508 42.857 0.00 0.00 34.94 3.18
171 172 0.912528 CGCTTCGGTCTAACGTAAGC 59.087 55.000 6.85 6.85 45.62 3.09
172 173 1.275505 GCTTCGGTCTAACGTAAGCC 58.724 55.000 5.81 0.00 45.62 4.35
173 174 1.918595 CTTCGGTCTAACGTAAGCCC 58.081 55.000 0.00 0.00 45.62 5.19
174 175 1.203052 CTTCGGTCTAACGTAAGCCCA 59.797 52.381 0.00 0.00 45.62 5.36
175 176 1.255882 TCGGTCTAACGTAAGCCCAA 58.744 50.000 0.00 0.00 45.62 4.12
176 177 1.203052 TCGGTCTAACGTAAGCCCAAG 59.797 52.381 0.00 0.00 45.62 3.61
177 178 1.203052 CGGTCTAACGTAAGCCCAAGA 59.797 52.381 0.00 0.00 45.62 3.02
178 179 2.734492 CGGTCTAACGTAAGCCCAAGAG 60.734 54.545 0.00 0.00 45.62 2.85
179 180 2.233186 GGTCTAACGTAAGCCCAAGAGT 59.767 50.000 0.00 0.00 45.62 3.24
180 181 3.251571 GTCTAACGTAAGCCCAAGAGTG 58.748 50.000 0.00 0.00 45.62 3.51
181 182 2.895404 TCTAACGTAAGCCCAAGAGTGT 59.105 45.455 0.00 0.00 45.62 3.55
182 183 4.081406 TCTAACGTAAGCCCAAGAGTGTA 58.919 43.478 0.00 0.00 45.62 2.90
183 184 3.314541 AACGTAAGCCCAAGAGTGTAG 57.685 47.619 0.00 0.00 45.62 2.74
184 185 1.067071 ACGTAAGCCCAAGAGTGTAGC 60.067 52.381 0.00 0.00 45.62 3.58
185 186 1.739371 CGTAAGCCCAAGAGTGTAGCC 60.739 57.143 0.00 0.00 0.00 3.93
186 187 1.278127 GTAAGCCCAAGAGTGTAGCCA 59.722 52.381 0.00 0.00 0.00 4.75
187 188 0.995024 AAGCCCAAGAGTGTAGCCAT 59.005 50.000 0.00 0.00 0.00 4.40
188 189 0.254178 AGCCCAAGAGTGTAGCCATG 59.746 55.000 0.00 0.00 0.00 3.66
189 190 1.379642 GCCCAAGAGTGTAGCCATGC 61.380 60.000 0.00 0.00 0.00 4.06
190 191 0.254178 CCCAAGAGTGTAGCCATGCT 59.746 55.000 0.00 0.00 43.41 3.79
191 192 1.486310 CCCAAGAGTGTAGCCATGCTA 59.514 52.381 0.00 0.00 40.44 3.49
200 201 1.480789 TAGCCATGCTACTTCGGTCA 58.519 50.000 0.00 0.00 40.44 4.02
201 202 0.613260 AGCCATGCTACTTCGGTCAA 59.387 50.000 0.00 0.00 36.99 3.18
202 203 0.727398 GCCATGCTACTTCGGTCAAC 59.273 55.000 0.00 0.00 0.00 3.18
203 204 1.369625 CCATGCTACTTCGGTCAACC 58.630 55.000 0.00 0.00 0.00 3.77
204 205 1.338674 CCATGCTACTTCGGTCAACCA 60.339 52.381 0.00 0.00 35.14 3.67
205 206 2.632377 CATGCTACTTCGGTCAACCAT 58.368 47.619 0.00 0.00 35.14 3.55
206 207 2.851263 TGCTACTTCGGTCAACCATT 57.149 45.000 0.00 0.00 35.14 3.16
207 208 3.965379 TGCTACTTCGGTCAACCATTA 57.035 42.857 0.00 0.00 35.14 1.90
208 209 4.274602 TGCTACTTCGGTCAACCATTAA 57.725 40.909 0.00 0.00 35.14 1.40
209 210 4.839121 TGCTACTTCGGTCAACCATTAAT 58.161 39.130 0.00 0.00 35.14 1.40
210 211 4.634004 TGCTACTTCGGTCAACCATTAATG 59.366 41.667 8.58 8.58 35.14 1.90
211 212 4.634443 GCTACTTCGGTCAACCATTAATGT 59.366 41.667 14.25 0.18 35.14 2.71
212 213 5.447279 GCTACTTCGGTCAACCATTAATGTG 60.447 44.000 14.25 7.15 35.14 3.21
213 214 4.647611 ACTTCGGTCAACCATTAATGTGA 58.352 39.130 14.25 9.33 35.14 3.58
214 215 5.067273 ACTTCGGTCAACCATTAATGTGAA 58.933 37.500 14.25 5.85 35.14 3.18
215 216 5.533154 ACTTCGGTCAACCATTAATGTGAAA 59.467 36.000 14.25 3.84 35.14 2.69
216 217 6.039941 ACTTCGGTCAACCATTAATGTGAAAA 59.960 34.615 14.25 7.00 35.14 2.29
217 218 6.007936 TCGGTCAACCATTAATGTGAAAAG 57.992 37.500 14.25 7.28 35.14 2.27
218 219 5.048364 TCGGTCAACCATTAATGTGAAAAGG 60.048 40.000 14.25 0.00 35.14 3.11
219 220 5.278758 CGGTCAACCATTAATGTGAAAAGGT 60.279 40.000 14.25 0.32 35.14 3.50
220 221 5.925969 GGTCAACCATTAATGTGAAAAGGTG 59.074 40.000 14.25 6.75 35.64 4.00
221 222 5.925969 GTCAACCATTAATGTGAAAAGGTGG 59.074 40.000 14.25 1.27 0.00 4.61
222 223 5.011533 TCAACCATTAATGTGAAAAGGTGGG 59.988 40.000 14.25 0.00 0.00 4.61
223 224 3.260632 ACCATTAATGTGAAAAGGTGGGC 59.739 43.478 14.25 0.00 0.00 5.36
224 225 3.369366 CCATTAATGTGAAAAGGTGGGCC 60.369 47.826 14.25 0.00 0.00 5.80
225 226 1.931635 TAATGTGAAAAGGTGGGCCC 58.068 50.000 17.59 17.59 34.57 5.80
226 227 0.105246 AATGTGAAAAGGTGGGCCCA 60.105 50.000 24.45 24.45 34.66 5.36
227 228 0.105246 ATGTGAAAAGGTGGGCCCAA 60.105 50.000 30.64 8.01 34.66 4.12
228 229 0.758685 TGTGAAAAGGTGGGCCCAAG 60.759 55.000 30.64 0.00 34.66 3.61
229 230 1.152355 TGAAAAGGTGGGCCCAAGG 60.152 57.895 30.64 0.00 34.66 3.61
230 231 1.155155 GAAAAGGTGGGCCCAAGGA 59.845 57.895 30.64 0.00 34.66 3.36
231 232 1.152333 AAAAGGTGGGCCCAAGGAC 60.152 57.895 30.64 17.50 34.66 3.85
232 233 1.664956 AAAAGGTGGGCCCAAGGACT 61.665 55.000 30.64 19.64 34.66 3.85
233 234 1.664956 AAAGGTGGGCCCAAGGACTT 61.665 55.000 30.64 24.22 34.66 3.01
234 235 1.664956 AAGGTGGGCCCAAGGACTTT 61.665 55.000 30.64 14.34 34.66 2.66
235 236 1.152333 GGTGGGCCCAAGGACTTTT 60.152 57.895 30.64 0.00 0.00 2.27
236 237 0.762842 GGTGGGCCCAAGGACTTTTT 60.763 55.000 30.64 0.00 0.00 1.94
237 238 0.392706 GTGGGCCCAAGGACTTTTTG 59.607 55.000 30.64 0.00 0.00 2.44
238 239 0.762461 TGGGCCCAAGGACTTTTTGG 60.762 55.000 26.33 0.00 43.77 3.28
239 240 1.371183 GGCCCAAGGACTTTTTGGC 59.629 57.895 0.00 7.96 43.00 4.52
247 248 2.881111 GGACTTTTTGGCCTACTCCT 57.119 50.000 3.32 0.00 41.93 3.69
248 249 2.437413 GGACTTTTTGGCCTACTCCTG 58.563 52.381 3.32 0.00 41.93 3.86
249 250 2.039879 GGACTTTTTGGCCTACTCCTGA 59.960 50.000 3.32 0.00 41.93 3.86
250 251 3.075148 GACTTTTTGGCCTACTCCTGAC 58.925 50.000 3.32 0.00 0.00 3.51
251 252 2.224793 ACTTTTTGGCCTACTCCTGACC 60.225 50.000 3.32 0.00 0.00 4.02
252 253 1.440618 TTTTGGCCTACTCCTGACCA 58.559 50.000 3.32 0.00 0.00 4.02
253 254 1.440618 TTTGGCCTACTCCTGACCAA 58.559 50.000 3.32 0.00 38.58 3.67
254 255 1.440618 TTGGCCTACTCCTGACCAAA 58.559 50.000 3.32 0.00 37.45 3.28
255 256 1.440618 TGGCCTACTCCTGACCAAAA 58.559 50.000 3.32 0.00 0.00 2.44
256 257 1.777878 TGGCCTACTCCTGACCAAAAA 59.222 47.619 3.32 0.00 0.00 1.94
257 258 2.224769 TGGCCTACTCCTGACCAAAAAG 60.225 50.000 3.32 0.00 0.00 2.27
258 259 2.437413 GCCTACTCCTGACCAAAAAGG 58.563 52.381 0.00 0.00 45.67 3.11
259 260 2.039879 GCCTACTCCTGACCAAAAAGGA 59.960 50.000 0.00 0.00 40.36 3.36
260 261 3.676093 CCTACTCCTGACCAAAAAGGAC 58.324 50.000 0.00 0.00 37.68 3.85
261 262 3.328050 CCTACTCCTGACCAAAAAGGACT 59.672 47.826 0.00 0.00 37.68 3.85
262 263 3.953542 ACTCCTGACCAAAAAGGACTT 57.046 42.857 0.00 0.00 37.68 3.01
263 264 4.251103 ACTCCTGACCAAAAAGGACTTT 57.749 40.909 0.00 0.00 37.68 2.66
264 265 4.610333 ACTCCTGACCAAAAAGGACTTTT 58.390 39.130 4.29 4.29 43.88 2.27
265 266 4.645136 ACTCCTGACCAAAAAGGACTTTTC 59.355 41.667 10.18 0.00 41.45 2.29
266 267 3.630312 TCCTGACCAAAAAGGACTTTTCG 59.370 43.478 10.18 6.73 41.45 3.46
267 268 3.243401 CCTGACCAAAAAGGACTTTTCGG 60.243 47.826 11.85 11.85 41.45 4.30
268 269 2.100087 TGACCAAAAAGGACTTTTCGGC 59.900 45.455 13.05 8.40 41.45 5.54
269 270 1.411246 ACCAAAAAGGACTTTTCGGCC 59.589 47.619 13.05 0.00 41.45 6.13
270 271 1.686587 CCAAAAAGGACTTTTCGGCCT 59.313 47.619 10.18 0.00 41.45 5.19
271 272 2.888414 CCAAAAAGGACTTTTCGGCCTA 59.112 45.455 10.18 0.00 41.45 3.93
272 273 3.509967 CCAAAAAGGACTTTTCGGCCTAT 59.490 43.478 10.18 0.00 41.45 2.57
273 274 4.021456 CCAAAAAGGACTTTTCGGCCTATT 60.021 41.667 10.18 0.00 41.45 1.73
274 275 5.161358 CAAAAAGGACTTTTCGGCCTATTC 58.839 41.667 10.18 0.00 41.45 1.75
275 276 2.711978 AGGACTTTTCGGCCTATTCC 57.288 50.000 0.00 0.00 0.00 3.01
276 277 2.197465 AGGACTTTTCGGCCTATTCCT 58.803 47.619 0.00 0.00 0.00 3.36
277 278 2.092914 AGGACTTTTCGGCCTATTCCTG 60.093 50.000 0.00 0.00 30.61 3.86
278 279 2.093128 GGACTTTTCGGCCTATTCCTGA 60.093 50.000 0.00 0.00 0.00 3.86
279 280 2.937149 GACTTTTCGGCCTATTCCTGAC 59.063 50.000 0.00 0.00 0.00 3.51
280 281 2.289565 CTTTTCGGCCTATTCCTGACC 58.710 52.381 0.00 0.00 0.00 4.02
281 282 1.281419 TTTCGGCCTATTCCTGACCA 58.719 50.000 0.00 0.00 0.00 4.02
282 283 1.281419 TTCGGCCTATTCCTGACCAA 58.719 50.000 0.00 0.00 0.00 3.67
283 284 1.281419 TCGGCCTATTCCTGACCAAA 58.719 50.000 0.00 0.00 0.00 3.28
284 285 1.631388 TCGGCCTATTCCTGACCAAAA 59.369 47.619 0.00 0.00 0.00 2.44
285 286 2.040545 TCGGCCTATTCCTGACCAAAAA 59.959 45.455 0.00 0.00 0.00 1.94
286 287 2.423538 CGGCCTATTCCTGACCAAAAAG 59.576 50.000 0.00 0.00 0.00 2.27
287 288 2.760650 GGCCTATTCCTGACCAAAAAGG 59.239 50.000 0.00 0.00 45.67 3.11
298 299 2.148916 CCAAAAAGGTCTTTTCGGCC 57.851 50.000 8.86 0.00 41.45 6.13
299 300 1.270094 CCAAAAAGGTCTTTTCGGCCC 60.270 52.381 8.86 0.00 41.45 5.80
300 301 1.410882 CAAAAAGGTCTTTTCGGCCCA 59.589 47.619 8.86 0.00 41.45 5.36
301 302 1.783071 AAAAGGTCTTTTCGGCCCAA 58.217 45.000 0.00 0.00 38.27 4.12
302 303 1.328279 AAAGGTCTTTTCGGCCCAAG 58.672 50.000 0.00 0.00 0.00 3.61
303 304 0.185175 AAGGTCTTTTCGGCCCAAGT 59.815 50.000 0.00 0.00 0.00 3.16
304 305 1.061546 AGGTCTTTTCGGCCCAAGTA 58.938 50.000 0.00 0.00 0.00 2.24
305 306 1.162698 GGTCTTTTCGGCCCAAGTAC 58.837 55.000 0.00 0.00 0.00 2.73
306 307 0.794473 GTCTTTTCGGCCCAAGTACG 59.206 55.000 0.00 0.00 0.00 3.67
307 308 0.952010 TCTTTTCGGCCCAAGTACGC 60.952 55.000 0.00 0.00 0.00 4.42
308 309 1.227883 TTTTCGGCCCAAGTACGCA 60.228 52.632 0.00 0.00 0.00 5.24
309 310 1.508808 TTTTCGGCCCAAGTACGCAC 61.509 55.000 0.00 0.00 0.00 5.34
310 311 3.887335 TTCGGCCCAAGTACGCACC 62.887 63.158 0.00 0.00 0.00 5.01
311 312 4.388499 CGGCCCAAGTACGCACCT 62.388 66.667 0.00 0.00 0.00 4.00
312 313 2.033602 GGCCCAAGTACGCACCTT 59.966 61.111 0.00 0.00 0.00 3.50
313 314 1.602605 GGCCCAAGTACGCACCTTT 60.603 57.895 0.00 0.00 0.00 3.11
314 315 1.176619 GGCCCAAGTACGCACCTTTT 61.177 55.000 0.00 0.00 0.00 2.27
315 316 0.240145 GCCCAAGTACGCACCTTTTC 59.760 55.000 0.00 0.00 0.00 2.29
316 317 0.515564 CCCAAGTACGCACCTTTTCG 59.484 55.000 0.00 0.00 0.00 3.46
317 318 0.515564 CCAAGTACGCACCTTTTCGG 59.484 55.000 0.00 0.00 39.35 4.30
318 319 0.110373 CAAGTACGCACCTTTTCGGC 60.110 55.000 0.00 0.00 35.61 5.54
319 320 1.232621 AAGTACGCACCTTTTCGGCC 61.233 55.000 0.00 0.00 35.61 6.13
320 321 1.962306 GTACGCACCTTTTCGGCCA 60.962 57.895 2.24 0.00 35.61 5.36
321 322 1.227883 TACGCACCTTTTCGGCCAA 60.228 52.632 2.24 0.00 35.61 4.52
322 323 1.231958 TACGCACCTTTTCGGCCAAG 61.232 55.000 2.24 0.00 35.61 3.61
323 324 2.650778 GCACCTTTTCGGCCAAGG 59.349 61.111 16.89 16.89 45.74 3.61
324 325 2.650778 CACCTTTTCGGCCAAGGC 59.349 61.111 18.11 1.52 44.32 4.35
325 326 2.197324 ACCTTTTCGGCCAAGGCA 59.803 55.556 18.11 0.00 44.32 4.75
326 327 1.456705 ACCTTTTCGGCCAAGGCAA 60.457 52.632 18.11 0.00 44.32 4.52
327 328 1.290009 CCTTTTCGGCCAAGGCAAG 59.710 57.895 13.87 7.59 44.11 4.01
328 329 1.178534 CCTTTTCGGCCAAGGCAAGA 61.179 55.000 13.87 8.81 44.11 3.02
329 330 0.039165 CTTTTCGGCCAAGGCAAGAC 60.039 55.000 13.87 0.00 44.11 3.01
330 331 1.460273 TTTTCGGCCAAGGCAAGACC 61.460 55.000 13.87 0.00 44.11 3.85
331 332 4.697756 TCGGCCAAGGCAAGACCG 62.698 66.667 13.87 6.88 46.52 4.79
332 333 4.697756 CGGCCAAGGCAAGACCGA 62.698 66.667 13.87 0.00 46.71 4.69
333 334 2.282180 GGCCAAGGCAAGACCGAA 60.282 61.111 13.87 0.00 46.52 4.30
334 335 1.901464 GGCCAAGGCAAGACCGAAA 60.901 57.895 13.87 0.00 46.52 3.46
335 336 1.460273 GGCCAAGGCAAGACCGAAAA 61.460 55.000 13.87 0.00 46.52 2.29
336 337 0.039165 GCCAAGGCAAGACCGAAAAG 60.039 55.000 6.14 0.00 46.52 2.27
337 338 1.318576 CCAAGGCAAGACCGAAAAGT 58.681 50.000 0.00 0.00 46.52 2.66
338 339 1.266989 CCAAGGCAAGACCGAAAAGTC 59.733 52.381 0.00 0.00 46.52 3.01
339 340 1.266989 CAAGGCAAGACCGAAAAGTCC 59.733 52.381 0.00 0.00 46.52 3.85
340 341 0.472471 AGGCAAGACCGAAAAGTCCA 59.528 50.000 0.00 0.00 46.52 4.02
341 342 1.073923 AGGCAAGACCGAAAAGTCCAT 59.926 47.619 0.00 0.00 46.52 3.41
342 343 1.886542 GGCAAGACCGAAAAGTCCATT 59.113 47.619 0.00 0.00 37.49 3.16
343 344 2.296190 GGCAAGACCGAAAAGTCCATTT 59.704 45.455 0.00 0.00 37.49 2.32
344 345 3.565516 GCAAGACCGAAAAGTCCATTTC 58.434 45.455 0.00 0.00 37.49 2.17
351 352 3.378911 GAAAAGTCCATTTCGGCCAAA 57.621 42.857 2.24 2.92 30.37 3.28
352 353 3.317150 GAAAAGTCCATTTCGGCCAAAG 58.683 45.455 2.24 0.00 30.37 2.77
353 354 1.995376 AAGTCCATTTCGGCCAAAGT 58.005 45.000 2.24 0.00 33.14 2.66
354 355 1.247567 AGTCCATTTCGGCCAAAGTG 58.752 50.000 2.24 0.00 33.14 3.16
355 356 1.202879 AGTCCATTTCGGCCAAAGTGA 60.203 47.619 2.24 1.24 33.14 3.41
356 357 1.200020 GTCCATTTCGGCCAAAGTGAG 59.800 52.381 2.24 0.00 33.14 3.51
357 358 0.527565 CCATTTCGGCCAAAGTGAGG 59.472 55.000 2.24 1.04 0.00 3.86
363 364 3.758172 GCCAAAGTGAGGCCGAAA 58.242 55.556 0.00 0.00 46.50 3.46
364 365 2.037871 GCCAAAGTGAGGCCGAAAA 58.962 52.632 0.00 0.00 46.50 2.29
365 366 0.318699 GCCAAAGTGAGGCCGAAAAC 60.319 55.000 0.00 0.00 46.50 2.43
366 367 1.028905 CCAAAGTGAGGCCGAAAACA 58.971 50.000 0.00 0.00 0.00 2.83
367 368 1.269051 CCAAAGTGAGGCCGAAAACAC 60.269 52.381 0.00 4.58 0.00 3.32
368 369 1.029681 AAAGTGAGGCCGAAAACACC 58.970 50.000 0.00 0.00 34.33 4.16
369 370 0.822121 AAGTGAGGCCGAAAACACCC 60.822 55.000 0.00 0.00 34.33 4.61
370 371 1.228154 GTGAGGCCGAAAACACCCT 60.228 57.895 0.00 0.00 0.00 4.34
371 372 0.822121 GTGAGGCCGAAAACACCCTT 60.822 55.000 0.00 0.00 0.00 3.95
372 373 0.106419 TGAGGCCGAAAACACCCTTT 60.106 50.000 0.00 0.00 0.00 3.11
373 374 1.037493 GAGGCCGAAAACACCCTTTT 58.963 50.000 0.00 0.00 0.00 2.27
374 375 1.000607 GAGGCCGAAAACACCCTTTTC 60.001 52.381 0.00 0.00 35.63 2.29
378 379 3.580904 GAAAACACCCTTTTCGGCC 57.419 52.632 0.00 0.00 0.00 6.13
379 380 0.032952 GAAAACACCCTTTTCGGCCC 59.967 55.000 0.00 0.00 0.00 5.80
380 381 0.688087 AAAACACCCTTTTCGGCCCA 60.688 50.000 0.00 0.00 0.00 5.36
381 382 1.396607 AAACACCCTTTTCGGCCCAC 61.397 55.000 0.00 0.00 0.00 4.61
382 383 2.989253 CACCCTTTTCGGCCCACC 60.989 66.667 0.00 0.00 0.00 4.61
383 384 4.295199 ACCCTTTTCGGCCCACCC 62.295 66.667 0.00 0.00 0.00 4.61
405 406 4.687464 CCGACGGGTGCTAGTTTT 57.313 55.556 5.81 0.00 0.00 2.43
406 407 2.159181 CCGACGGGTGCTAGTTTTG 58.841 57.895 5.81 0.00 0.00 2.44
407 408 0.320073 CCGACGGGTGCTAGTTTTGA 60.320 55.000 5.81 0.00 0.00 2.69
408 409 1.674817 CCGACGGGTGCTAGTTTTGAT 60.675 52.381 5.81 0.00 0.00 2.57
409 410 2.073816 CGACGGGTGCTAGTTTTGATT 58.926 47.619 0.00 0.00 0.00 2.57
410 411 2.482721 CGACGGGTGCTAGTTTTGATTT 59.517 45.455 0.00 0.00 0.00 2.17
411 412 3.058501 CGACGGGTGCTAGTTTTGATTTT 60.059 43.478 0.00 0.00 0.00 1.82
412 413 4.555906 CGACGGGTGCTAGTTTTGATTTTT 60.556 41.667 0.00 0.00 0.00 1.94
413 414 4.866921 ACGGGTGCTAGTTTTGATTTTTC 58.133 39.130 0.00 0.00 0.00 2.29
414 415 4.583073 ACGGGTGCTAGTTTTGATTTTTCT 59.417 37.500 0.00 0.00 0.00 2.52
415 416 5.154222 CGGGTGCTAGTTTTGATTTTTCTC 58.846 41.667 0.00 0.00 0.00 2.87
416 417 5.470368 GGGTGCTAGTTTTGATTTTTCTCC 58.530 41.667 0.00 0.00 0.00 3.71
417 418 5.010617 GGGTGCTAGTTTTGATTTTTCTCCA 59.989 40.000 0.00 0.00 0.00 3.86
418 419 6.295292 GGGTGCTAGTTTTGATTTTTCTCCAT 60.295 38.462 0.00 0.00 0.00 3.41
419 420 7.154656 GGTGCTAGTTTTGATTTTTCTCCATT 58.845 34.615 0.00 0.00 0.00 3.16
420 421 7.329471 GGTGCTAGTTTTGATTTTTCTCCATTC 59.671 37.037 0.00 0.00 0.00 2.67
421 422 8.084684 GTGCTAGTTTTGATTTTTCTCCATTCT 58.915 33.333 0.00 0.00 0.00 2.40
422 423 8.641541 TGCTAGTTTTGATTTTTCTCCATTCTT 58.358 29.630 0.00 0.00 0.00 2.52
423 424 9.481340 GCTAGTTTTGATTTTTCTCCATTCTTT 57.519 29.630 0.00 0.00 0.00 2.52
436 437 9.595823 TTTCTCCATTCTTTACTATAGTTTCCG 57.404 33.333 11.40 0.00 0.00 4.30
437 438 8.529424 TCTCCATTCTTTACTATAGTTTCCGA 57.471 34.615 11.40 0.61 0.00 4.55
438 439 8.974238 TCTCCATTCTTTACTATAGTTTCCGAA 58.026 33.333 11.40 9.35 0.00 4.30
439 440 9.765795 CTCCATTCTTTACTATAGTTTCCGAAT 57.234 33.333 11.40 11.03 0.00 3.34
444 445 9.444600 TTCTTTACTATAGTTTCCGAATTTGCT 57.555 29.630 11.40 0.00 0.00 3.91
453 454 7.755582 AGTTTCCGAATTTGCTATAAAATGC 57.244 32.000 0.00 0.00 30.21 3.56
454 455 6.472163 AGTTTCCGAATTTGCTATAAAATGCG 59.528 34.615 4.01 4.01 44.70 4.73
455 456 5.493133 TCCGAATTTGCTATAAAATGCGT 57.507 34.783 8.70 0.00 43.96 5.24
456 457 5.507077 TCCGAATTTGCTATAAAATGCGTC 58.493 37.500 8.70 0.00 43.96 5.19
457 458 5.065346 TCCGAATTTGCTATAAAATGCGTCA 59.935 36.000 8.70 0.00 43.96 4.35
458 459 5.914635 CCGAATTTGCTATAAAATGCGTCAT 59.085 36.000 8.70 0.00 43.96 3.06
459 460 7.041712 TCCGAATTTGCTATAAAATGCGTCATA 60.042 33.333 8.70 0.00 43.96 2.15
460 461 7.269084 CCGAATTTGCTATAAAATGCGTCATAG 59.731 37.037 8.70 0.00 43.96 2.23
461 462 7.798516 CGAATTTGCTATAAAATGCGTCATAGT 59.201 33.333 3.10 0.00 41.63 2.12
462 463 9.450807 GAATTTGCTATAAAATGCGTCATAGTT 57.549 29.630 0.00 0.00 30.21 2.24
463 464 9.801873 AATTTGCTATAAAATGCGTCATAGTTT 57.198 25.926 0.00 0.00 30.21 2.66
499 500 2.887568 CGAGAGGGCACATGCGAC 60.888 66.667 0.00 0.00 43.26 5.19
500 501 2.581354 GAGAGGGCACATGCGACT 59.419 61.111 0.00 0.00 43.26 4.18
709 711 1.479389 CCCTAATCCCATGAAGCCCAC 60.479 57.143 0.00 0.00 0.00 4.61
733 735 5.373262 CAACAAAAATAATGCAACCGAAGC 58.627 37.500 0.00 0.00 0.00 3.86
855 857 1.586564 CACGGCGTACTAGAGCAGC 60.587 63.158 14.22 0.00 34.54 5.25
898 900 0.674895 CCGAGCAGTTCTTTCCTGGG 60.675 60.000 0.00 0.00 0.00 4.45
904 906 0.035458 AGTTCTTTCCTGGGCACTCG 59.965 55.000 0.00 0.00 0.00 4.18
948 950 4.636206 ACCGGAGAAATTTCTATGTTCTGC 59.364 41.667 20.51 5.78 37.73 4.26
965 967 0.175760 TGCTCAGTAACCAGATCGCC 59.824 55.000 0.00 0.00 0.00 5.54
1014 1018 4.101790 GCAATGGCGGTGACCACG 62.102 66.667 1.11 0.00 44.17 4.94
1065 1069 3.777925 CTTGCCGTGGCTTCGTCG 61.778 66.667 12.84 0.00 42.51 5.12
1160 1164 2.501222 CGAGTACGTGCGCTTCGT 60.501 61.111 26.84 26.84 43.86 3.85
1257 1261 1.377725 CATGCCGGAGCTGTCCTTT 60.378 57.895 5.05 0.00 41.34 3.11
1260 1264 1.600916 GCCGGAGCTGTCCTTTGTT 60.601 57.895 5.05 0.00 41.34 2.83
2023 2027 1.608590 CCAACTGGAAATGCAACTCGT 59.391 47.619 0.00 0.00 37.39 4.18
2127 2131 1.153568 CGTCATGCAGGACATCCGT 60.154 57.895 28.84 0.00 42.08 4.69
2139 2143 3.760035 ATCCGTTGCGAGCCGAGT 61.760 61.111 0.00 0.00 0.00 4.18
2224 2228 4.424566 GGTACACGGCGGCGAAGA 62.425 66.667 38.93 18.56 0.00 2.87
2547 2551 2.199535 ACCAAGGCCAAGCAAGCT 59.800 55.556 5.01 0.00 0.00 3.74
2622 2626 2.069465 CTCTGCTGAGCTATCCGCGT 62.069 60.000 5.83 0.00 45.59 6.01
2821 2825 2.673775 TGGACTTGGCAAAGAATCCA 57.326 45.000 8.15 8.50 36.63 3.41
2822 2826 2.956132 TGGACTTGGCAAAGAATCCAA 58.044 42.857 8.15 0.00 36.26 3.53
2823 2827 3.509442 TGGACTTGGCAAAGAATCCAAT 58.491 40.909 8.15 0.00 41.10 3.16
2824 2828 3.511146 TGGACTTGGCAAAGAATCCAATC 59.489 43.478 8.15 0.00 41.10 2.67
2825 2829 3.118992 GGACTTGGCAAAGAATCCAATCC 60.119 47.826 8.15 0.00 41.10 3.01
2826 2830 2.833943 ACTTGGCAAAGAATCCAATCCC 59.166 45.455 8.15 0.00 41.10 3.85
2827 2831 2.619697 TGGCAAAGAATCCAATCCCA 57.380 45.000 0.00 0.00 0.00 4.37
2828 2832 2.899975 TGGCAAAGAATCCAATCCCAA 58.100 42.857 0.00 0.00 0.00 4.12
2829 2833 3.246301 TGGCAAAGAATCCAATCCCAAA 58.754 40.909 0.00 0.00 0.00 3.28
2830 2834 3.261390 TGGCAAAGAATCCAATCCCAAAG 59.739 43.478 0.00 0.00 0.00 2.77
2831 2835 3.515104 GGCAAAGAATCCAATCCCAAAGA 59.485 43.478 0.00 0.00 0.00 2.52
2832 2836 4.382362 GGCAAAGAATCCAATCCCAAAGAG 60.382 45.833 0.00 0.00 0.00 2.85
2833 2837 4.221482 GCAAAGAATCCAATCCCAAAGAGT 59.779 41.667 0.00 0.00 0.00 3.24
2834 2838 5.623141 GCAAAGAATCCAATCCCAAAGAGTC 60.623 44.000 0.00 0.00 0.00 3.36
2835 2839 5.527026 AAGAATCCAATCCCAAAGAGTCT 57.473 39.130 0.00 0.00 35.36 3.24
2854 2858 1.153086 CCCTCCTCGGAAATGCAGG 60.153 63.158 0.00 0.00 33.16 4.85
2856 2860 1.078214 CTCCTCGGAAATGCAGGCA 60.078 57.895 0.00 0.00 0.00 4.75
2917 2921 4.153330 TCTCCGGGAGCCCCTACC 62.153 72.222 19.48 0.00 42.67 3.18
3112 3116 1.746615 CAGTGGCTGATCAACCCCG 60.747 63.158 12.62 0.00 32.44 5.73
3165 3169 2.047179 GGCGACCCTCTGTGGTTC 60.047 66.667 0.00 0.00 39.24 3.62
3210 3214 0.104120 CGATCATGTACCGGGAGCAA 59.896 55.000 6.32 0.00 0.00 3.91
3315 3319 1.945394 CAGCTGATGTACATCAAGGCC 59.055 52.381 31.21 22.41 46.10 5.19
3357 3361 3.731728 TCCCTGGTGATGCTGGGC 61.732 66.667 0.00 0.00 39.49 5.36
3745 3749 1.005569 AGGAGGACTCGTACATGGACA 59.994 52.381 9.21 0.00 0.00 4.02
4321 4355 7.229306 TGACAATGTATGTGCTTCTTCTTCTTT 59.771 33.333 0.00 0.00 44.12 2.52
4405 4439 6.841755 AGCTTTACTCCATCCTCTATAACACT 59.158 38.462 0.00 0.00 0.00 3.55
4407 4441 8.808092 GCTTTACTCCATCCTCTATAACACTAT 58.192 37.037 0.00 0.00 0.00 2.12
4411 4445 6.435904 ACTCCATCCTCTATAACACTATGCTC 59.564 42.308 0.00 0.00 0.00 4.26
4416 4450 6.860034 TCCTCTATAACACTATGCTCCCTAA 58.140 40.000 0.00 0.00 0.00 2.69
4428 4462 7.706607 CACTATGCTCCCTAATTTTAAAAAGCC 59.293 37.037 14.39 2.05 0.00 4.35
4447 4481 6.670695 AAGCCCACATTCAATTAAAGTCTT 57.329 33.333 0.00 0.00 0.00 3.01
4451 4485 6.928492 GCCCACATTCAATTAAAGTCTTCAAA 59.072 34.615 0.00 0.00 0.00 2.69
4452 4486 7.440856 GCCCACATTCAATTAAAGTCTTCAAAA 59.559 33.333 0.00 0.00 0.00 2.44
4453 4487 8.981647 CCCACATTCAATTAAAGTCTTCAAAAG 58.018 33.333 0.00 0.00 0.00 2.27
4471 4508 4.746535 AAAGTTTGGTCACCCGATTTTT 57.253 36.364 0.00 0.00 0.00 1.94
4473 4510 6.413783 AAAGTTTGGTCACCCGATTTTTAT 57.586 33.333 0.00 0.00 0.00 1.40
4475 4512 4.155280 AGTTTGGTCACCCGATTTTTATCG 59.845 41.667 0.00 0.00 43.15 2.92
4494 4531 5.782893 ATCGGGTCAACAATTTCTCAAAA 57.217 34.783 0.00 0.00 0.00 2.44
4498 4535 4.984785 GGGTCAACAATTTCTCAAAAGCTC 59.015 41.667 0.00 0.00 0.00 4.09
4499 4536 5.221322 GGGTCAACAATTTCTCAAAAGCTCT 60.221 40.000 0.00 0.00 0.00 4.09
4502 4539 7.752686 GGTCAACAATTTCTCAAAAGCTCTATC 59.247 37.037 0.00 0.00 0.00 2.08
4555 4592 5.777732 TGCTTCCTAATTTTTAAGGCCTCAA 59.222 36.000 5.23 0.00 32.55 3.02
4558 4595 7.117812 GCTTCCTAATTTTTAAGGCCTCAAAAC 59.882 37.037 13.70 0.00 32.55 2.43
4616 4653 7.220741 TGATTTTGATCGGGTCAACAATTTA 57.779 32.000 2.53 0.00 46.14 1.40
4618 4655 8.310382 TGATTTTGATCGGGTCAACAATTTATT 58.690 29.630 2.53 0.00 46.14 1.40
4622 4659 7.328277 TGATCGGGTCAACAATTTATTAAGG 57.672 36.000 0.00 0.00 32.78 2.69
4623 4660 7.113437 TGATCGGGTCAACAATTTATTAAGGA 58.887 34.615 0.00 0.00 32.78 3.36
4624 4661 6.995511 TCGGGTCAACAATTTATTAAGGAG 57.004 37.500 0.00 0.00 0.00 3.69
4625 4662 5.355910 TCGGGTCAACAATTTATTAAGGAGC 59.644 40.000 0.00 0.00 0.00 4.70
4626 4663 5.357032 CGGGTCAACAATTTATTAAGGAGCT 59.643 40.000 0.00 0.00 0.00 4.09
4627 4664 6.458342 CGGGTCAACAATTTATTAAGGAGCTC 60.458 42.308 4.71 4.71 0.00 4.09
4686 4726 6.434028 TGAAACTCTTCTATTCAATTGGGGTG 59.566 38.462 5.42 0.00 30.60 4.61
4687 4727 4.273318 ACTCTTCTATTCAATTGGGGTGC 58.727 43.478 5.42 0.00 0.00 5.01
4697 4737 3.075884 CAATTGGGGTGCTCAATTTTGG 58.924 45.455 0.00 0.00 41.28 3.28
4702 4742 3.007831 TGGGGTGCTCAATTTTGGATTTC 59.992 43.478 0.00 0.00 0.00 2.17
4708 4748 6.589907 GGTGCTCAATTTTGGATTTCGTTTAT 59.410 34.615 0.00 0.00 0.00 1.40
4718 4758 8.527567 TTTGGATTTCGTTTATGATTTTGACC 57.472 30.769 0.00 0.00 0.00 4.02
4720 4760 6.072397 TGGATTTCGTTTATGATTTTGACCGT 60.072 34.615 0.00 0.00 0.00 4.83
4726 4766 2.723124 ATGATTTTGACCGTGCCAAC 57.277 45.000 0.00 0.00 0.00 3.77
4727 4767 1.393603 TGATTTTGACCGTGCCAACA 58.606 45.000 0.00 0.00 0.00 3.33
4749 4816 9.672086 CAACAATTTTTCAAATCAATCAGCAAT 57.328 25.926 0.00 0.00 0.00 3.56
4754 4821 7.579589 TTTTCAAATCAATCAGCAATAACCG 57.420 32.000 0.00 0.00 0.00 4.44
4755 4822 5.247507 TCAAATCAATCAGCAATAACCGG 57.752 39.130 0.00 0.00 0.00 5.28
4757 4824 2.121291 TCAATCAGCAATAACCGGCA 57.879 45.000 0.00 0.00 0.00 5.69
4776 4843 8.402798 ACCGGCATATAAAAACATATCAATCA 57.597 30.769 0.00 0.00 0.00 2.57
4777 4844 8.855110 ACCGGCATATAAAAACATATCAATCAA 58.145 29.630 0.00 0.00 0.00 2.57
4778 4845 9.128107 CCGGCATATAAAAACATATCAATCAAC 57.872 33.333 0.00 0.00 0.00 3.18
4779 4846 9.676195 CGGCATATAAAAACATATCAATCAACA 57.324 29.630 0.00 0.00 0.00 3.33
4784 4851 8.909708 ATAAAAACATATCAATCAACACCGTG 57.090 30.769 0.00 0.00 0.00 4.94
4785 4852 5.957842 AAACATATCAATCAACACCGTGT 57.042 34.783 0.00 0.00 0.00 4.49
4787 4854 7.441890 AAACATATCAATCAACACCGTGTTA 57.558 32.000 16.44 6.35 38.77 2.41
4828 5038 0.401105 CTCCATCATCTCCCCCACCT 60.401 60.000 0.00 0.00 0.00 4.00
4836 5046 2.780924 TCCCCCACCTGCCAAACT 60.781 61.111 0.00 0.00 0.00 2.66
4837 5047 1.464395 TCCCCCACCTGCCAAACTA 60.464 57.895 0.00 0.00 0.00 2.24
4838 5048 1.068943 TCCCCCACCTGCCAAACTAA 61.069 55.000 0.00 0.00 0.00 2.24
4839 5049 0.178947 CCCCCACCTGCCAAACTAAA 60.179 55.000 0.00 0.00 0.00 1.85
4844 5054 5.205056 CCCCACCTGCCAAACTAAATATTA 58.795 41.667 0.00 0.00 0.00 0.98
4845 5055 5.838521 CCCCACCTGCCAAACTAAATATTAT 59.161 40.000 0.00 0.00 0.00 1.28
4849 5059 9.295825 CCACCTGCCAAACTAAATATTATATCA 57.704 33.333 0.00 0.00 0.00 2.15
4994 5204 8.763049 TTCATGATAAATCTCATCATACCGAC 57.237 34.615 0.00 0.00 40.37 4.79
5006 5216 9.025041 TCTCATCATACCGACTTGATATTATGT 57.975 33.333 0.00 0.00 31.50 2.29
5122 5339 2.815158 AGAAACCCAACAACACCAACT 58.185 42.857 0.00 0.00 0.00 3.16
5124 5341 1.190643 AACCCAACAACACCAACTGG 58.809 50.000 0.00 0.00 42.17 4.00
5125 5342 0.333312 ACCCAACAACACCAACTGGA 59.667 50.000 1.86 0.00 38.94 3.86
5132 5349 2.491693 ACAACACCAACTGGACAACAAG 59.508 45.455 1.86 0.00 38.94 3.16
5135 5352 0.033601 ACCAACTGGACAACAAGGCA 60.034 50.000 1.86 0.00 38.94 4.75
5136 5353 0.385390 CCAACTGGACAACAAGGCAC 59.615 55.000 0.00 0.00 37.39 5.01
5137 5354 1.102154 CAACTGGACAACAAGGCACA 58.898 50.000 0.00 0.00 0.00 4.57
5139 5356 0.751643 ACTGGACAACAAGGCACACC 60.752 55.000 0.00 0.00 0.00 4.16
5148 5365 1.457455 AAGGCACACCCAACCCTTG 60.457 57.895 0.00 0.00 36.39 3.61
5151 5368 0.468400 GGCACACCCAACCCTTGTAA 60.468 55.000 0.00 0.00 0.00 2.41
5152 5369 1.627864 GCACACCCAACCCTTGTAAT 58.372 50.000 0.00 0.00 0.00 1.89
5153 5370 1.967779 GCACACCCAACCCTTGTAATT 59.032 47.619 0.00 0.00 0.00 1.40
5154 5371 2.367241 GCACACCCAACCCTTGTAATTT 59.633 45.455 0.00 0.00 0.00 1.82
5155 5372 3.801983 GCACACCCAACCCTTGTAATTTG 60.802 47.826 0.00 0.00 0.00 2.32
5156 5373 3.386402 CACACCCAACCCTTGTAATTTGT 59.614 43.478 0.00 0.00 0.00 2.83
5157 5374 3.386402 ACACCCAACCCTTGTAATTTGTG 59.614 43.478 0.00 0.00 0.00 3.33
5158 5375 2.367241 ACCCAACCCTTGTAATTTGTGC 59.633 45.455 0.00 0.00 0.00 4.57
5159 5376 2.289382 CCCAACCCTTGTAATTTGTGCC 60.289 50.000 0.00 0.00 0.00 5.01
5160 5377 2.366916 CCAACCCTTGTAATTTGTGCCA 59.633 45.455 0.00 0.00 0.00 4.92
5161 5378 3.181461 CCAACCCTTGTAATTTGTGCCAA 60.181 43.478 0.00 0.00 0.00 4.52
5162 5379 4.504689 CCAACCCTTGTAATTTGTGCCAAT 60.505 41.667 0.00 0.00 0.00 3.16
5163 5380 4.535526 ACCCTTGTAATTTGTGCCAATC 57.464 40.909 0.00 0.00 0.00 2.67
5164 5381 4.159557 ACCCTTGTAATTTGTGCCAATCT 58.840 39.130 0.00 0.00 0.00 2.40
5165 5382 4.220602 ACCCTTGTAATTTGTGCCAATCTC 59.779 41.667 0.00 0.00 0.00 2.75
5166 5383 4.414852 CCTTGTAATTTGTGCCAATCTCG 58.585 43.478 0.00 0.00 0.00 4.04
5167 5384 4.414852 CTTGTAATTTGTGCCAATCTCGG 58.585 43.478 0.00 0.00 0.00 4.63
5177 5394 2.620251 CCAATCTCGGCCACATTAGA 57.380 50.000 2.24 0.00 0.00 2.10
5178 5395 2.487934 CCAATCTCGGCCACATTAGAG 58.512 52.381 2.24 0.00 0.00 2.43
5179 5396 2.487934 CAATCTCGGCCACATTAGAGG 58.512 52.381 2.24 0.00 0.00 3.69
5186 5403 2.332063 GCCACATTAGAGGCTAAGCA 57.668 50.000 0.00 0.00 46.56 3.91
5187 5404 1.943340 GCCACATTAGAGGCTAAGCAC 59.057 52.381 0.00 0.00 46.56 4.40
5188 5405 2.205074 CCACATTAGAGGCTAAGCACG 58.795 52.381 0.00 0.00 0.00 5.34
5189 5406 1.594862 CACATTAGAGGCTAAGCACGC 59.405 52.381 0.00 0.00 0.00 5.34
5190 5407 1.482593 ACATTAGAGGCTAAGCACGCT 59.517 47.619 0.00 0.00 0.00 5.07
5191 5408 2.093447 ACATTAGAGGCTAAGCACGCTT 60.093 45.455 9.57 9.57 39.83 4.68
5192 5409 2.295253 TTAGAGGCTAAGCACGCTTC 57.705 50.000 7.71 0.00 37.47 3.86
5193 5410 0.100682 TAGAGGCTAAGCACGCTTCG 59.899 55.000 7.71 3.05 38.38 3.79
5194 5411 2.803713 GAGGCTAAGCACGCTTCGC 61.804 63.158 17.32 17.32 41.93 4.70
5196 5413 4.210304 GCTAAGCACGCTTCGCCG 62.210 66.667 15.31 2.44 38.35 6.46
5197 5414 4.210304 CTAAGCACGCTTCGCCGC 62.210 66.667 7.71 0.00 37.47 6.53
5211 5428 3.479269 CCGCGCCGTTCTTCAGTC 61.479 66.667 0.00 0.00 0.00 3.51
5212 5429 3.827784 CGCGCCGTTCTTCAGTCG 61.828 66.667 0.00 0.00 0.00 4.18
5213 5430 2.733593 GCGCCGTTCTTCAGTCGT 60.734 61.111 0.00 0.00 0.00 4.34
5214 5431 3.000080 GCGCCGTTCTTCAGTCGTG 62.000 63.158 0.00 0.00 0.00 4.35
5215 5432 2.372690 CGCCGTTCTTCAGTCGTGG 61.373 63.158 0.00 0.00 0.00 4.94
5216 5433 2.027625 GCCGTTCTTCAGTCGTGGG 61.028 63.158 0.00 0.00 0.00 4.61
5217 5434 1.663739 CCGTTCTTCAGTCGTGGGA 59.336 57.895 0.00 0.00 0.00 4.37
5218 5435 0.246635 CCGTTCTTCAGTCGTGGGAT 59.753 55.000 0.00 0.00 0.00 3.85
5219 5436 1.337823 CCGTTCTTCAGTCGTGGGATT 60.338 52.381 0.00 0.00 0.00 3.01
5220 5437 2.094390 CCGTTCTTCAGTCGTGGGATTA 60.094 50.000 0.00 0.00 0.00 1.75
5221 5438 3.581755 CGTTCTTCAGTCGTGGGATTAA 58.418 45.455 0.00 0.00 0.00 1.40
5222 5439 3.367025 CGTTCTTCAGTCGTGGGATTAAC 59.633 47.826 0.00 0.00 0.00 2.01
5223 5440 4.566987 GTTCTTCAGTCGTGGGATTAACT 58.433 43.478 0.00 0.00 0.00 2.24
5224 5441 4.451629 TCTTCAGTCGTGGGATTAACTC 57.548 45.455 0.00 0.00 0.00 3.01
5225 5442 4.087182 TCTTCAGTCGTGGGATTAACTCT 58.913 43.478 0.00 0.00 0.00 3.24
5226 5443 4.527038 TCTTCAGTCGTGGGATTAACTCTT 59.473 41.667 0.00 0.00 0.00 2.85
5227 5444 4.884668 TCAGTCGTGGGATTAACTCTTT 57.115 40.909 0.00 0.00 0.00 2.52
5228 5445 5.223449 TCAGTCGTGGGATTAACTCTTTT 57.777 39.130 0.00 0.00 0.00 2.27
5229 5446 4.994852 TCAGTCGTGGGATTAACTCTTTTG 59.005 41.667 0.00 0.00 0.00 2.44
5230 5447 4.755123 CAGTCGTGGGATTAACTCTTTTGT 59.245 41.667 0.00 0.00 0.00 2.83
5231 5448 5.929992 CAGTCGTGGGATTAACTCTTTTGTA 59.070 40.000 0.00 0.00 0.00 2.41
5232 5449 6.594159 CAGTCGTGGGATTAACTCTTTTGTAT 59.406 38.462 0.00 0.00 0.00 2.29
5233 5450 6.817140 AGTCGTGGGATTAACTCTTTTGTATC 59.183 38.462 0.00 0.00 0.00 2.24
5234 5451 6.817140 GTCGTGGGATTAACTCTTTTGTATCT 59.183 38.462 0.00 0.00 0.00 1.98
5235 5452 7.977853 GTCGTGGGATTAACTCTTTTGTATCTA 59.022 37.037 0.00 0.00 0.00 1.98
5236 5453 8.195436 TCGTGGGATTAACTCTTTTGTATCTAG 58.805 37.037 0.00 0.00 0.00 2.43
5237 5454 7.980099 CGTGGGATTAACTCTTTTGTATCTAGT 59.020 37.037 0.00 0.00 0.00 2.57
5252 5469 9.908152 TTTGTATCTAGTACATTATGGTGATCG 57.092 33.333 0.00 0.00 42.63 3.69
5253 5470 8.051901 TGTATCTAGTACATTATGGTGATCGG 57.948 38.462 0.00 0.00 38.37 4.18
5254 5471 7.668469 TGTATCTAGTACATTATGGTGATCGGT 59.332 37.037 0.00 0.00 38.37 4.69
5255 5472 6.971726 TCTAGTACATTATGGTGATCGGTT 57.028 37.500 0.00 0.00 0.00 4.44
5256 5473 6.745116 TCTAGTACATTATGGTGATCGGTTG 58.255 40.000 0.00 0.00 0.00 3.77
5257 5474 5.353394 AGTACATTATGGTGATCGGTTGT 57.647 39.130 0.00 0.00 0.00 3.32
5258 5475 5.741011 AGTACATTATGGTGATCGGTTGTT 58.259 37.500 0.00 0.00 0.00 2.83
5259 5476 6.177610 AGTACATTATGGTGATCGGTTGTTT 58.822 36.000 0.00 0.00 0.00 2.83
5260 5477 5.975693 ACATTATGGTGATCGGTTGTTTT 57.024 34.783 0.00 0.00 0.00 2.43
5261 5478 7.825270 AGTACATTATGGTGATCGGTTGTTTTA 59.175 33.333 0.00 0.00 0.00 1.52
5262 5479 7.639113 ACATTATGGTGATCGGTTGTTTTAT 57.361 32.000 0.00 0.00 0.00 1.40
5263 5480 8.062065 ACATTATGGTGATCGGTTGTTTTATT 57.938 30.769 0.00 0.00 0.00 1.40
5264 5481 8.527810 ACATTATGGTGATCGGTTGTTTTATTT 58.472 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.180171 TCATATGTTCCTGCCACCCG 59.820 55.000 1.90 0.00 0.00 5.28
1 2 1.680338 GTCATATGTTCCTGCCACCC 58.320 55.000 1.90 0.00 0.00 4.61
2 3 1.299541 CGTCATATGTTCCTGCCACC 58.700 55.000 1.90 0.00 0.00 4.61
3 4 1.299541 CCGTCATATGTTCCTGCCAC 58.700 55.000 1.90 0.00 0.00 5.01
4 5 0.180171 CCCGTCATATGTTCCTGCCA 59.820 55.000 1.90 0.00 0.00 4.92
5 6 0.468226 TCCCGTCATATGTTCCTGCC 59.532 55.000 1.90 0.00 0.00 4.85
6 7 2.213499 CTTCCCGTCATATGTTCCTGC 58.787 52.381 1.90 0.00 0.00 4.85
7 8 2.485479 CCCTTCCCGTCATATGTTCCTG 60.485 54.545 1.90 0.00 0.00 3.86
8 9 1.768870 CCCTTCCCGTCATATGTTCCT 59.231 52.381 1.90 0.00 0.00 3.36
9 10 1.202770 CCCCTTCCCGTCATATGTTCC 60.203 57.143 1.90 0.00 0.00 3.62
10 11 1.489230 ACCCCTTCCCGTCATATGTTC 59.511 52.381 1.90 0.00 0.00 3.18
11 12 1.591768 ACCCCTTCCCGTCATATGTT 58.408 50.000 1.90 0.00 0.00 2.71
12 13 1.211949 CAACCCCTTCCCGTCATATGT 59.788 52.381 1.90 0.00 0.00 2.29
13 14 1.476833 CCAACCCCTTCCCGTCATATG 60.477 57.143 0.00 0.00 0.00 1.78
14 15 0.843984 CCAACCCCTTCCCGTCATAT 59.156 55.000 0.00 0.00 0.00 1.78
15 16 0.548197 ACCAACCCCTTCCCGTCATA 60.548 55.000 0.00 0.00 0.00 2.15
16 17 1.850755 ACCAACCCCTTCCCGTCAT 60.851 57.895 0.00 0.00 0.00 3.06
17 18 2.448931 ACCAACCCCTTCCCGTCA 60.449 61.111 0.00 0.00 0.00 4.35
18 19 2.033602 CACCAACCCCTTCCCGTC 59.966 66.667 0.00 0.00 0.00 4.79
19 20 3.576259 CCACCAACCCCTTCCCGT 61.576 66.667 0.00 0.00 0.00 5.28
20 21 4.360405 CCCACCAACCCCTTCCCG 62.360 72.222 0.00 0.00 0.00 5.14
21 22 2.026208 TTTCCCACCAACCCCTTCCC 62.026 60.000 0.00 0.00 0.00 3.97
22 23 0.830444 GTTTCCCACCAACCCCTTCC 60.830 60.000 0.00 0.00 0.00 3.46
23 24 1.176619 CGTTTCCCACCAACCCCTTC 61.177 60.000 0.00 0.00 0.00 3.46
24 25 1.152631 CGTTTCCCACCAACCCCTT 60.153 57.895 0.00 0.00 0.00 3.95
25 26 2.518933 CGTTTCCCACCAACCCCT 59.481 61.111 0.00 0.00 0.00 4.79
26 27 2.599281 CCGTTTCCCACCAACCCC 60.599 66.667 0.00 0.00 0.00 4.95
27 28 2.599281 CCCGTTTCCCACCAACCC 60.599 66.667 0.00 0.00 0.00 4.11
28 29 2.196502 ACCCGTTTCCCACCAACC 59.803 61.111 0.00 0.00 0.00 3.77
29 30 2.197605 CCACCCGTTTCCCACCAAC 61.198 63.158 0.00 0.00 0.00 3.77
30 31 2.196229 CCACCCGTTTCCCACCAA 59.804 61.111 0.00 0.00 0.00 3.67
31 32 4.589675 GCCACCCGTTTCCCACCA 62.590 66.667 0.00 0.00 0.00 4.17
36 37 4.646877 TTCCCGCCACCCGTTTCC 62.647 66.667 0.00 0.00 34.38 3.13
37 38 1.529152 ATTTTCCCGCCACCCGTTTC 61.529 55.000 0.00 0.00 34.38 2.78
38 39 0.251253 TATTTTCCCGCCACCCGTTT 60.251 50.000 0.00 0.00 34.38 3.60
39 40 0.033894 ATATTTTCCCGCCACCCGTT 60.034 50.000 0.00 0.00 34.38 4.44
40 41 0.033894 AATATTTTCCCGCCACCCGT 60.034 50.000 0.00 0.00 34.38 5.28
41 42 0.383949 CAATATTTTCCCGCCACCCG 59.616 55.000 0.00 0.00 0.00 5.28
42 43 1.681264 CTCAATATTTTCCCGCCACCC 59.319 52.381 0.00 0.00 0.00 4.61
43 44 1.681264 CCTCAATATTTTCCCGCCACC 59.319 52.381 0.00 0.00 0.00 4.61
44 45 2.650322 TCCTCAATATTTTCCCGCCAC 58.350 47.619 0.00 0.00 0.00 5.01
45 46 3.374042 TTCCTCAATATTTTCCCGCCA 57.626 42.857 0.00 0.00 0.00 5.69
46 47 4.729227 TTTTCCTCAATATTTTCCCGCC 57.271 40.909 0.00 0.00 0.00 6.13
47 48 5.109210 CCTTTTTCCTCAATATTTTCCCGC 58.891 41.667 0.00 0.00 0.00 6.13
48 49 5.186992 ACCCTTTTTCCTCAATATTTTCCCG 59.813 40.000 0.00 0.00 0.00 5.14
49 50 6.620877 ACCCTTTTTCCTCAATATTTTCCC 57.379 37.500 0.00 0.00 0.00 3.97
50 51 6.371548 GCAACCCTTTTTCCTCAATATTTTCC 59.628 38.462 0.00 0.00 0.00 3.13
51 52 6.090763 CGCAACCCTTTTTCCTCAATATTTTC 59.909 38.462 0.00 0.00 0.00 2.29
52 53 5.931724 CGCAACCCTTTTTCCTCAATATTTT 59.068 36.000 0.00 0.00 0.00 1.82
53 54 5.478407 CGCAACCCTTTTTCCTCAATATTT 58.522 37.500 0.00 0.00 0.00 1.40
54 55 4.620567 GCGCAACCCTTTTTCCTCAATATT 60.621 41.667 0.30 0.00 0.00 1.28
55 56 3.119137 GCGCAACCCTTTTTCCTCAATAT 60.119 43.478 0.30 0.00 0.00 1.28
56 57 2.230266 GCGCAACCCTTTTTCCTCAATA 59.770 45.455 0.30 0.00 0.00 1.90
57 58 1.000843 GCGCAACCCTTTTTCCTCAAT 59.999 47.619 0.30 0.00 0.00 2.57
58 59 0.387565 GCGCAACCCTTTTTCCTCAA 59.612 50.000 0.30 0.00 0.00 3.02
59 60 1.791103 CGCGCAACCCTTTTTCCTCA 61.791 55.000 8.75 0.00 0.00 3.86
60 61 1.081442 CGCGCAACCCTTTTTCCTC 60.081 57.895 8.75 0.00 0.00 3.71
61 62 1.104577 TTCGCGCAACCCTTTTTCCT 61.105 50.000 8.75 0.00 0.00 3.36
62 63 0.249114 TTTCGCGCAACCCTTTTTCC 60.249 50.000 8.75 0.00 0.00 3.13
63 64 1.562017 TTTTCGCGCAACCCTTTTTC 58.438 45.000 8.75 0.00 0.00 2.29
64 65 2.232756 ATTTTCGCGCAACCCTTTTT 57.767 40.000 8.75 0.00 0.00 1.94
65 66 3.586100 ATATTTTCGCGCAACCCTTTT 57.414 38.095 8.75 0.00 0.00 2.27
66 67 4.911514 ATATATTTTCGCGCAACCCTTT 57.088 36.364 8.75 0.00 0.00 3.11
67 68 4.911514 AATATATTTTCGCGCAACCCTT 57.088 36.364 8.75 0.00 0.00 3.95
68 69 4.911514 AAATATATTTTCGCGCAACCCT 57.088 36.364 8.75 0.00 0.00 4.34
69 70 5.959652 AAAAATATATTTTCGCGCAACCC 57.040 34.783 20.86 0.00 38.92 4.11
89 90 7.180051 ACCATTGCCCATCTTAGACATTAAAAA 59.820 33.333 0.00 0.00 0.00 1.94
90 91 6.667414 ACCATTGCCCATCTTAGACATTAAAA 59.333 34.615 0.00 0.00 0.00 1.52
91 92 6.194235 ACCATTGCCCATCTTAGACATTAAA 58.806 36.000 0.00 0.00 0.00 1.52
92 93 5.765510 ACCATTGCCCATCTTAGACATTAA 58.234 37.500 0.00 0.00 0.00 1.40
93 94 5.387113 ACCATTGCCCATCTTAGACATTA 57.613 39.130 0.00 0.00 0.00 1.90
94 95 4.255510 ACCATTGCCCATCTTAGACATT 57.744 40.909 0.00 0.00 0.00 2.71
95 96 3.956199 CAACCATTGCCCATCTTAGACAT 59.044 43.478 0.00 0.00 0.00 3.06
96 97 3.355378 CAACCATTGCCCATCTTAGACA 58.645 45.455 0.00 0.00 0.00 3.41
146 147 3.062042 ACGTTAGACCGAAGCGATTTTT 58.938 40.909 0.00 0.00 0.00 1.94
147 148 2.680577 ACGTTAGACCGAAGCGATTTT 58.319 42.857 0.00 0.00 0.00 1.82
148 149 2.358939 ACGTTAGACCGAAGCGATTT 57.641 45.000 0.00 0.00 0.00 2.17
149 150 3.432782 CTTACGTTAGACCGAAGCGATT 58.567 45.455 0.00 0.00 0.00 3.34
150 151 2.793933 GCTTACGTTAGACCGAAGCGAT 60.794 50.000 5.61 0.00 34.18 4.58
151 152 1.466360 GCTTACGTTAGACCGAAGCGA 60.466 52.381 5.61 0.00 34.18 4.93
152 153 0.912528 GCTTACGTTAGACCGAAGCG 59.087 55.000 5.61 0.00 34.18 4.68
153 154 1.275505 GGCTTACGTTAGACCGAAGC 58.724 55.000 5.61 7.08 38.77 3.86
154 155 1.918595 GGGCTTACGTTAGACCGAAG 58.081 55.000 11.33 0.00 32.51 3.79
158 159 2.233186 ACTCTTGGGCTTACGTTAGACC 59.767 50.000 19.72 19.72 44.22 3.85
159 160 3.251571 CACTCTTGGGCTTACGTTAGAC 58.748 50.000 5.61 1.38 0.00 2.59
160 161 2.895404 ACACTCTTGGGCTTACGTTAGA 59.105 45.455 5.61 0.00 0.00 2.10
161 162 3.314541 ACACTCTTGGGCTTACGTTAG 57.685 47.619 0.00 0.00 0.00 2.34
162 163 3.367703 GCTACACTCTTGGGCTTACGTTA 60.368 47.826 0.00 0.00 0.00 3.18
163 164 2.612221 GCTACACTCTTGGGCTTACGTT 60.612 50.000 0.00 0.00 0.00 3.99
164 165 1.067071 GCTACACTCTTGGGCTTACGT 60.067 52.381 0.00 0.00 0.00 3.57
165 166 1.641577 GCTACACTCTTGGGCTTACG 58.358 55.000 0.00 0.00 0.00 3.18
166 167 1.278127 TGGCTACACTCTTGGGCTTAC 59.722 52.381 0.00 0.00 0.00 2.34
167 168 1.651737 TGGCTACACTCTTGGGCTTA 58.348 50.000 0.00 0.00 0.00 3.09
168 169 0.995024 ATGGCTACACTCTTGGGCTT 59.005 50.000 0.00 0.00 0.00 4.35
169 170 0.254178 CATGGCTACACTCTTGGGCT 59.746 55.000 0.00 0.00 0.00 5.19
170 171 1.379642 GCATGGCTACACTCTTGGGC 61.380 60.000 0.00 0.00 0.00 5.36
171 172 0.254178 AGCATGGCTACACTCTTGGG 59.746 55.000 0.00 0.00 36.99 4.12
172 173 2.988010 TAGCATGGCTACACTCTTGG 57.012 50.000 0.00 0.00 40.44 3.61
181 182 1.480789 TGACCGAAGTAGCATGGCTA 58.519 50.000 0.00 0.00 40.44 3.93
182 183 0.613260 TTGACCGAAGTAGCATGGCT 59.387 50.000 0.00 0.00 43.41 4.75
183 184 0.727398 GTTGACCGAAGTAGCATGGC 59.273 55.000 0.00 0.00 0.00 4.40
184 185 1.338674 TGGTTGACCGAAGTAGCATGG 60.339 52.381 0.00 0.00 39.43 3.66
185 186 2.093306 TGGTTGACCGAAGTAGCATG 57.907 50.000 0.00 0.00 39.43 4.06
186 187 3.350219 AATGGTTGACCGAAGTAGCAT 57.650 42.857 0.00 0.00 39.43 3.79
187 188 2.851263 AATGGTTGACCGAAGTAGCA 57.149 45.000 0.00 0.00 39.43 3.49
188 189 4.634443 ACATTAATGGTTGACCGAAGTAGC 59.366 41.667 19.37 0.00 39.43 3.58
189 190 5.872617 TCACATTAATGGTTGACCGAAGTAG 59.127 40.000 19.37 0.00 39.43 2.57
190 191 5.795972 TCACATTAATGGTTGACCGAAGTA 58.204 37.500 19.37 0.00 39.43 2.24
191 192 4.647611 TCACATTAATGGTTGACCGAAGT 58.352 39.130 19.37 0.00 39.43 3.01
192 193 5.621197 TTCACATTAATGGTTGACCGAAG 57.379 39.130 19.37 0.00 39.43 3.79
193 194 6.392625 TTTTCACATTAATGGTTGACCGAA 57.607 33.333 19.37 4.46 39.43 4.30
194 195 5.048364 CCTTTTCACATTAATGGTTGACCGA 60.048 40.000 19.37 0.00 39.43 4.69
195 196 5.160641 CCTTTTCACATTAATGGTTGACCG 58.839 41.667 19.37 6.10 39.43 4.79
196 197 5.925969 CACCTTTTCACATTAATGGTTGACC 59.074 40.000 19.37 0.00 32.50 4.02
197 198 5.925969 CCACCTTTTCACATTAATGGTTGAC 59.074 40.000 19.37 0.00 32.50 3.18
198 199 5.011533 CCCACCTTTTCACATTAATGGTTGA 59.988 40.000 19.37 11.80 32.50 3.18
199 200 5.237048 CCCACCTTTTCACATTAATGGTTG 58.763 41.667 19.37 9.69 32.50 3.77
200 201 4.262851 GCCCACCTTTTCACATTAATGGTT 60.263 41.667 19.37 0.00 32.50 3.67
201 202 3.260632 GCCCACCTTTTCACATTAATGGT 59.739 43.478 19.37 3.12 34.43 3.55
202 203 3.369366 GGCCCACCTTTTCACATTAATGG 60.369 47.826 19.37 8.69 0.00 3.16
203 204 3.369366 GGGCCCACCTTTTCACATTAATG 60.369 47.826 19.95 14.01 35.85 1.90
204 205 2.837591 GGGCCCACCTTTTCACATTAAT 59.162 45.455 19.95 0.00 35.85 1.40
205 206 2.252714 GGGCCCACCTTTTCACATTAA 58.747 47.619 19.95 0.00 35.85 1.40
206 207 1.148027 TGGGCCCACCTTTTCACATTA 59.852 47.619 24.45 0.00 41.11 1.90
207 208 0.105246 TGGGCCCACCTTTTCACATT 60.105 50.000 24.45 0.00 41.11 2.71
208 209 0.105246 TTGGGCCCACCTTTTCACAT 60.105 50.000 28.70 0.00 41.11 3.21
209 210 0.758685 CTTGGGCCCACCTTTTCACA 60.759 55.000 28.70 5.17 41.11 3.58
210 211 1.471829 CCTTGGGCCCACCTTTTCAC 61.472 60.000 28.70 0.00 41.11 3.18
211 212 1.152355 CCTTGGGCCCACCTTTTCA 60.152 57.895 28.70 7.00 41.11 2.69
212 213 1.155155 TCCTTGGGCCCACCTTTTC 59.845 57.895 28.70 0.00 41.11 2.29
213 214 1.152333 GTCCTTGGGCCCACCTTTT 60.152 57.895 28.70 0.00 41.11 2.27
214 215 1.664956 AAGTCCTTGGGCCCACCTTT 61.665 55.000 28.70 12.19 41.11 3.11
215 216 1.664956 AAAGTCCTTGGGCCCACCTT 61.665 55.000 28.70 20.59 41.11 3.50
216 217 1.664956 AAAAGTCCTTGGGCCCACCT 61.665 55.000 28.70 15.47 41.11 4.00
217 218 0.762842 AAAAAGTCCTTGGGCCCACC 60.763 55.000 28.70 13.16 40.81 4.61
218 219 0.392706 CAAAAAGTCCTTGGGCCCAC 59.607 55.000 28.70 13.96 0.00 4.61
219 220 0.762461 CCAAAAAGTCCTTGGGCCCA 60.762 55.000 24.45 24.45 39.82 5.36
220 221 2.057830 CCAAAAAGTCCTTGGGCCC 58.942 57.895 17.59 17.59 39.82 5.80
221 222 1.371183 GCCAAAAAGTCCTTGGGCC 59.629 57.895 0.00 0.00 43.11 5.80
223 224 1.893137 GTAGGCCAAAAAGTCCTTGGG 59.107 52.381 5.01 0.00 43.11 4.12
224 225 2.820197 GAGTAGGCCAAAAAGTCCTTGG 59.180 50.000 5.01 0.00 45.26 3.61
225 226 2.820197 GGAGTAGGCCAAAAAGTCCTTG 59.180 50.000 5.01 0.00 31.21 3.61
226 227 2.716969 AGGAGTAGGCCAAAAAGTCCTT 59.283 45.455 5.01 0.00 39.55 3.36
227 228 2.040412 CAGGAGTAGGCCAAAAAGTCCT 59.960 50.000 5.01 11.54 42.59 3.85
228 229 2.039879 TCAGGAGTAGGCCAAAAAGTCC 59.960 50.000 5.01 9.29 33.61 3.85
229 230 3.075148 GTCAGGAGTAGGCCAAAAAGTC 58.925 50.000 5.01 0.00 0.00 3.01
230 231 2.224793 GGTCAGGAGTAGGCCAAAAAGT 60.225 50.000 5.01 0.00 0.00 2.66
231 232 2.224769 TGGTCAGGAGTAGGCCAAAAAG 60.225 50.000 5.01 0.00 0.00 2.27
232 233 1.777878 TGGTCAGGAGTAGGCCAAAAA 59.222 47.619 5.01 0.00 0.00 1.94
233 234 1.440618 TGGTCAGGAGTAGGCCAAAA 58.559 50.000 5.01 0.00 0.00 2.44
234 235 1.440618 TTGGTCAGGAGTAGGCCAAA 58.559 50.000 5.01 0.00 36.42 3.28
235 236 1.440618 TTTGGTCAGGAGTAGGCCAA 58.559 50.000 5.01 0.00 37.42 4.52
236 237 1.440618 TTTTGGTCAGGAGTAGGCCA 58.559 50.000 5.01 0.00 0.00 5.36
237 238 2.437413 CTTTTTGGTCAGGAGTAGGCC 58.563 52.381 0.00 0.00 0.00 5.19
238 239 2.039879 TCCTTTTTGGTCAGGAGTAGGC 59.960 50.000 0.00 0.00 33.99 3.93
239 240 3.328050 AGTCCTTTTTGGTCAGGAGTAGG 59.672 47.826 0.00 0.00 40.54 3.18
240 241 4.625607 AGTCCTTTTTGGTCAGGAGTAG 57.374 45.455 0.00 0.00 40.54 2.57
241 242 5.382664 AAAGTCCTTTTTGGTCAGGAGTA 57.617 39.130 0.00 0.00 41.34 2.59
242 243 3.953542 AAGTCCTTTTTGGTCAGGAGT 57.046 42.857 0.00 0.00 43.67 3.85
243 244 4.261197 CGAAAAGTCCTTTTTGGTCAGGAG 60.261 45.833 10.63 0.00 42.26 3.69
244 245 3.630312 CGAAAAGTCCTTTTTGGTCAGGA 59.370 43.478 10.63 0.00 42.26 3.86
245 246 3.964909 CGAAAAGTCCTTTTTGGTCAGG 58.035 45.455 10.63 0.00 42.26 3.86
251 252 4.783764 ATAGGCCGAAAAGTCCTTTTTG 57.216 40.909 11.29 11.29 42.26 2.44
252 253 4.219944 GGAATAGGCCGAAAAGTCCTTTTT 59.780 41.667 6.48 0.00 42.26 1.94
253 254 3.762288 GGAATAGGCCGAAAAGTCCTTTT 59.238 43.478 4.75 4.75 44.59 2.27
254 255 3.010250 AGGAATAGGCCGAAAAGTCCTTT 59.990 43.478 11.92 0.00 29.63 3.11
255 256 2.576648 AGGAATAGGCCGAAAAGTCCTT 59.423 45.455 11.92 0.00 29.63 3.36
256 257 2.092914 CAGGAATAGGCCGAAAAGTCCT 60.093 50.000 11.92 11.92 34.31 3.85
257 258 2.093128 TCAGGAATAGGCCGAAAAGTCC 60.093 50.000 0.00 2.79 0.00 3.85
258 259 2.937149 GTCAGGAATAGGCCGAAAAGTC 59.063 50.000 0.00 0.00 0.00 3.01
259 260 2.355818 GGTCAGGAATAGGCCGAAAAGT 60.356 50.000 0.00 0.00 0.00 2.66
260 261 2.289565 GGTCAGGAATAGGCCGAAAAG 58.710 52.381 0.00 0.00 0.00 2.27
261 262 1.631388 TGGTCAGGAATAGGCCGAAAA 59.369 47.619 0.00 0.00 0.00 2.29
262 263 1.281419 TGGTCAGGAATAGGCCGAAA 58.719 50.000 0.00 0.00 0.00 3.46
263 264 1.281419 TTGGTCAGGAATAGGCCGAA 58.719 50.000 0.00 0.00 0.00 4.30
264 265 1.281419 TTTGGTCAGGAATAGGCCGA 58.719 50.000 0.00 0.00 0.00 5.54
265 266 2.122783 TTTTGGTCAGGAATAGGCCG 57.877 50.000 0.00 0.00 0.00 6.13
266 267 2.760650 CCTTTTTGGTCAGGAATAGGCC 59.239 50.000 0.00 0.00 30.81 5.19
280 281 1.410882 TGGGCCGAAAAGACCTTTTTG 59.589 47.619 13.11 13.11 42.26 2.44
281 282 1.783071 TGGGCCGAAAAGACCTTTTT 58.217 45.000 8.88 0.00 42.26 1.94
282 283 1.686587 CTTGGGCCGAAAAGACCTTTT 59.313 47.619 0.54 7.39 44.59 2.27
283 284 1.328279 CTTGGGCCGAAAAGACCTTT 58.672 50.000 0.54 0.00 0.00 3.11
284 285 0.185175 ACTTGGGCCGAAAAGACCTT 59.815 50.000 15.99 0.00 0.00 3.50
285 286 1.061546 TACTTGGGCCGAAAAGACCT 58.938 50.000 15.99 0.00 0.00 3.85
286 287 1.162698 GTACTTGGGCCGAAAAGACC 58.837 55.000 15.99 4.62 0.00 3.85
287 288 0.794473 CGTACTTGGGCCGAAAAGAC 59.206 55.000 15.99 7.11 0.00 3.01
288 289 0.952010 GCGTACTTGGGCCGAAAAGA 60.952 55.000 15.99 0.00 0.00 2.52
289 290 1.231958 TGCGTACTTGGGCCGAAAAG 61.232 55.000 0.54 5.80 0.00 2.27
290 291 1.227883 TGCGTACTTGGGCCGAAAA 60.228 52.632 0.54 0.00 0.00 2.29
291 292 1.962306 GTGCGTACTTGGGCCGAAA 60.962 57.895 0.54 0.00 0.00 3.46
292 293 2.357760 GTGCGTACTTGGGCCGAA 60.358 61.111 0.00 0.00 0.00 4.30
293 294 4.382320 GGTGCGTACTTGGGCCGA 62.382 66.667 3.01 0.00 0.00 5.54
294 295 3.894547 AAGGTGCGTACTTGGGCCG 62.895 63.158 3.01 0.00 0.00 6.13
295 296 1.176619 AAAAGGTGCGTACTTGGGCC 61.177 55.000 3.01 0.00 0.00 5.80
296 297 0.240145 GAAAAGGTGCGTACTTGGGC 59.760 55.000 3.01 0.00 0.00 5.36
297 298 0.515564 CGAAAAGGTGCGTACTTGGG 59.484 55.000 3.01 0.00 0.00 4.12
298 299 0.515564 CCGAAAAGGTGCGTACTTGG 59.484 55.000 3.01 0.00 34.51 3.61
299 300 0.110373 GCCGAAAAGGTGCGTACTTG 60.110 55.000 3.01 0.00 43.70 3.16
300 301 1.232621 GGCCGAAAAGGTGCGTACTT 61.233 55.000 3.01 0.00 43.70 2.24
301 302 1.670083 GGCCGAAAAGGTGCGTACT 60.670 57.895 3.01 0.00 43.70 2.73
302 303 1.508808 TTGGCCGAAAAGGTGCGTAC 61.509 55.000 0.00 0.00 43.70 3.67
303 304 1.227883 TTGGCCGAAAAGGTGCGTA 60.228 52.632 0.00 0.00 43.70 4.42
304 305 2.517402 TTGGCCGAAAAGGTGCGT 60.517 55.556 0.00 0.00 43.70 5.24
305 306 2.255252 CTTGGCCGAAAAGGTGCG 59.745 61.111 0.00 0.00 43.70 5.34
306 307 2.650778 CCTTGGCCGAAAAGGTGC 59.349 61.111 11.45 0.00 43.70 5.01
307 308 1.743321 TTGCCTTGGCCGAAAAGGTG 61.743 55.000 18.88 0.00 45.14 4.00
308 309 1.456705 TTGCCTTGGCCGAAAAGGT 60.457 52.632 18.88 0.00 45.14 3.50
309 310 1.178534 TCTTGCCTTGGCCGAAAAGG 61.179 55.000 14.69 14.69 45.96 3.11
310 311 0.039165 GTCTTGCCTTGGCCGAAAAG 60.039 55.000 9.35 6.19 0.00 2.27
311 312 1.460273 GGTCTTGCCTTGGCCGAAAA 61.460 55.000 9.35 0.00 0.00 2.29
312 313 1.901464 GGTCTTGCCTTGGCCGAAA 60.901 57.895 9.35 0.00 0.00 3.46
313 314 2.282180 GGTCTTGCCTTGGCCGAA 60.282 61.111 9.35 0.00 0.00 4.30
314 315 4.697756 CGGTCTTGCCTTGGCCGA 62.698 66.667 9.35 0.00 44.57 5.54
315 316 4.697756 TCGGTCTTGCCTTGGCCG 62.698 66.667 9.35 7.30 43.32 6.13
316 317 1.460273 TTTTCGGTCTTGCCTTGGCC 61.460 55.000 9.35 0.00 34.25 5.36
317 318 0.039165 CTTTTCGGTCTTGCCTTGGC 60.039 55.000 4.43 4.43 34.25 4.52
318 319 1.266989 GACTTTTCGGTCTTGCCTTGG 59.733 52.381 0.00 0.00 33.81 3.61
319 320 1.266989 GGACTTTTCGGTCTTGCCTTG 59.733 52.381 0.00 0.00 36.55 3.61
320 321 1.133915 TGGACTTTTCGGTCTTGCCTT 60.134 47.619 0.00 0.00 36.55 4.35
321 322 0.472471 TGGACTTTTCGGTCTTGCCT 59.528 50.000 0.00 0.00 36.55 4.75
322 323 1.534729 ATGGACTTTTCGGTCTTGCC 58.465 50.000 0.00 0.00 36.55 4.52
323 324 3.565516 GAAATGGACTTTTCGGTCTTGC 58.434 45.455 0.00 0.00 36.55 4.01
337 338 1.533625 CTCACTTTGGCCGAAATGGA 58.466 50.000 14.11 7.29 42.00 3.41
338 339 0.527565 CCTCACTTTGGCCGAAATGG 59.472 55.000 14.11 5.19 42.50 3.16
339 340 0.109132 GCCTCACTTTGGCCGAAATG 60.109 55.000 7.92 7.92 44.32 2.32
340 341 2.267045 GCCTCACTTTGGCCGAAAT 58.733 52.632 6.92 0.00 44.32 2.17
341 342 3.758172 GCCTCACTTTGGCCGAAA 58.242 55.556 6.92 3.63 44.32 3.46
347 348 1.028905 TGTTTTCGGCCTCACTTTGG 58.971 50.000 0.00 0.00 0.00 3.28
348 349 1.269051 GGTGTTTTCGGCCTCACTTTG 60.269 52.381 0.00 0.00 0.00 2.77
349 350 1.029681 GGTGTTTTCGGCCTCACTTT 58.970 50.000 0.00 0.00 0.00 2.66
350 351 0.822121 GGGTGTTTTCGGCCTCACTT 60.822 55.000 0.00 0.00 0.00 3.16
351 352 1.228154 GGGTGTTTTCGGCCTCACT 60.228 57.895 0.00 0.00 0.00 3.41
352 353 0.822121 AAGGGTGTTTTCGGCCTCAC 60.822 55.000 0.00 2.38 0.00 3.51
353 354 0.106419 AAAGGGTGTTTTCGGCCTCA 60.106 50.000 0.00 0.00 0.00 3.86
354 355 1.000607 GAAAAGGGTGTTTTCGGCCTC 60.001 52.381 0.00 0.00 0.00 4.70
355 356 1.037493 GAAAAGGGTGTTTTCGGCCT 58.963 50.000 0.00 0.00 0.00 5.19
356 357 3.580904 GAAAAGGGTGTTTTCGGCC 57.419 52.632 0.00 0.00 0.00 6.13
360 361 0.032952 GGGCCGAAAAGGGTGTTTTC 59.967 55.000 0.00 0.95 41.48 2.29
361 362 0.688087 TGGGCCGAAAAGGGTGTTTT 60.688 50.000 0.00 0.00 41.48 2.43
362 363 1.075896 TGGGCCGAAAAGGGTGTTT 60.076 52.632 0.00 0.00 41.48 2.83
363 364 1.830847 GTGGGCCGAAAAGGGTGTT 60.831 57.895 0.00 0.00 41.48 3.32
364 365 2.203437 GTGGGCCGAAAAGGGTGT 60.203 61.111 0.00 0.00 41.48 4.16
365 366 2.989253 GGTGGGCCGAAAAGGGTG 60.989 66.667 0.00 0.00 41.48 4.61
366 367 4.295199 GGGTGGGCCGAAAAGGGT 62.295 66.667 0.00 0.00 41.48 4.34
368 369 4.653888 ACGGGTGGGCCGAAAAGG 62.654 66.667 0.00 0.00 44.97 3.11
369 370 3.361977 CACGGGTGGGCCGAAAAG 61.362 66.667 0.00 0.00 34.97 2.27
370 371 3.875023 TCACGGGTGGGCCGAAAA 61.875 61.111 0.00 0.00 34.97 2.29
371 372 4.629523 GTCACGGGTGGGCCGAAA 62.630 66.667 0.00 0.00 34.97 3.46
384 385 2.151049 AACTAGCACCCGTCGGTCAC 62.151 60.000 11.06 0.00 42.04 3.67
385 386 1.466025 AAACTAGCACCCGTCGGTCA 61.466 55.000 11.06 0.00 42.04 4.02
386 387 0.320160 AAAACTAGCACCCGTCGGTC 60.320 55.000 11.06 0.00 42.04 4.79
387 388 0.601841 CAAAACTAGCACCCGTCGGT 60.602 55.000 11.06 0.00 46.31 4.69
388 389 0.320073 TCAAAACTAGCACCCGTCGG 60.320 55.000 3.60 3.60 0.00 4.79
389 390 1.722011 ATCAAAACTAGCACCCGTCG 58.278 50.000 0.00 0.00 0.00 5.12
390 391 4.499037 AAAATCAAAACTAGCACCCGTC 57.501 40.909 0.00 0.00 0.00 4.79
391 392 4.583073 AGAAAAATCAAAACTAGCACCCGT 59.417 37.500 0.00 0.00 0.00 5.28
392 393 5.121221 AGAAAAATCAAAACTAGCACCCG 57.879 39.130 0.00 0.00 0.00 5.28
393 394 5.010617 TGGAGAAAAATCAAAACTAGCACCC 59.989 40.000 0.00 0.00 0.00 4.61
394 395 6.084326 TGGAGAAAAATCAAAACTAGCACC 57.916 37.500 0.00 0.00 0.00 5.01
395 396 8.084684 AGAATGGAGAAAAATCAAAACTAGCAC 58.915 33.333 0.00 0.00 0.00 4.40
396 397 8.181904 AGAATGGAGAAAAATCAAAACTAGCA 57.818 30.769 0.00 0.00 0.00 3.49
397 398 9.481340 AAAGAATGGAGAAAAATCAAAACTAGC 57.519 29.630 0.00 0.00 0.00 3.42
410 411 9.595823 CGGAAACTATAGTAAAGAATGGAGAAA 57.404 33.333 5.65 0.00 0.00 2.52
411 412 8.974238 TCGGAAACTATAGTAAAGAATGGAGAA 58.026 33.333 5.65 0.00 0.00 2.87
412 413 8.529424 TCGGAAACTATAGTAAAGAATGGAGA 57.471 34.615 5.65 0.00 0.00 3.71
413 414 9.765795 ATTCGGAAACTATAGTAAAGAATGGAG 57.234 33.333 5.65 0.00 0.00 3.86
418 419 9.444600 AGCAAATTCGGAAACTATAGTAAAGAA 57.555 29.630 5.65 10.00 0.00 2.52
427 428 9.463443 GCATTTTATAGCAAATTCGGAAACTAT 57.537 29.630 0.00 3.39 0.00 2.12
428 429 7.642194 CGCATTTTATAGCAAATTCGGAAACTA 59.358 33.333 0.00 0.00 31.60 2.24
429 430 6.472163 CGCATTTTATAGCAAATTCGGAAACT 59.528 34.615 0.00 0.00 31.60 2.66
430 431 6.252655 ACGCATTTTATAGCAAATTCGGAAAC 59.747 34.615 0.00 0.00 37.18 2.78
431 432 6.326375 ACGCATTTTATAGCAAATTCGGAAA 58.674 32.000 0.00 0.00 37.18 3.13
432 433 5.885881 ACGCATTTTATAGCAAATTCGGAA 58.114 33.333 6.80 0.00 37.18 4.30
433 434 5.065346 TGACGCATTTTATAGCAAATTCGGA 59.935 36.000 6.80 0.00 37.18 4.55
434 435 5.270083 TGACGCATTTTATAGCAAATTCGG 58.730 37.500 6.80 0.00 37.18 4.30
435 436 6.974677 ATGACGCATTTTATAGCAAATTCG 57.025 33.333 1.90 1.90 38.33 3.34
436 437 9.450807 AACTATGACGCATTTTATAGCAAATTC 57.549 29.630 0.00 0.00 0.00 2.17
437 438 9.801873 AAACTATGACGCATTTTATAGCAAATT 57.198 25.926 0.00 0.00 0.00 1.82
474 475 1.248101 TGTGCCCTCTCGTGAATCGA 61.248 55.000 0.00 0.00 46.83 3.59
478 479 1.375908 GCATGTGCCCTCTCGTGAA 60.376 57.895 0.00 0.00 34.31 3.18
709 711 5.614449 GCTTCGGTTGCATTATTTTTGTTGG 60.614 40.000 0.00 0.00 0.00 3.77
757 759 2.582172 TGGATCATTTGGAGGATGGTGT 59.418 45.455 0.00 0.00 0.00 4.16
877 879 0.603707 CAGGAAAGAACTGCTCGGCA 60.604 55.000 0.00 0.00 36.92 5.69
886 888 1.578206 GCGAGTGCCCAGGAAAGAAC 61.578 60.000 0.00 0.00 33.98 3.01
927 929 5.582269 TGAGCAGAACATAGAAATTTCTCCG 59.418 40.000 23.70 17.44 38.70 4.63
948 950 1.115467 AGGGCGATCTGGTTACTGAG 58.885 55.000 0.00 0.00 0.00 3.35
965 967 3.257393 CAAGCTAACACTCACAGCTAGG 58.743 50.000 0.00 0.00 44.70 3.02
1089 1093 1.481802 CCCATGGGATCCATCCTTTGG 60.482 57.143 28.27 15.30 43.15 3.28
1160 1164 3.973516 ACTGCCGCTTGACGTCGA 61.974 61.111 11.62 8.40 41.42 4.20
1257 1261 0.321298 GCTTCCAGTCGCCCTTAACA 60.321 55.000 0.00 0.00 0.00 2.41
1260 1264 1.596934 CTGCTTCCAGTCGCCCTTA 59.403 57.895 0.00 0.00 34.31 2.69
1410 1414 4.735132 TTGAGCGCCGTCTTCCCG 62.735 66.667 2.29 0.00 0.00 5.14
1518 1522 0.614697 TCTTCATCTCGGTGCTCCCA 60.615 55.000 0.00 0.00 0.00 4.37
2127 2131 2.807631 GAACGGTACTCGGCTCGCAA 62.808 60.000 8.31 0.00 44.45 4.85
2139 2143 2.376109 GATCTCTCACCAGGAACGGTA 58.624 52.381 0.00 0.00 37.07 4.02
2509 2513 1.029681 TAGTCGTACGCCATGCTCAT 58.970 50.000 11.24 0.00 0.00 2.90
2727 2731 0.957888 GCACCTCCAGCTGAAGGAAC 60.958 60.000 27.80 13.11 34.08 3.62
2821 2825 2.200955 GGAGGGAGACTCTTTGGGATT 58.799 52.381 1.74 0.00 45.83 3.01
2822 2826 1.367848 AGGAGGGAGACTCTTTGGGAT 59.632 52.381 1.74 0.00 45.83 3.85
2823 2827 0.793617 AGGAGGGAGACTCTTTGGGA 59.206 55.000 1.74 0.00 45.83 4.37
2824 2828 1.199615 GAGGAGGGAGACTCTTTGGG 58.800 60.000 1.74 0.00 45.83 4.12
2825 2829 0.820871 CGAGGAGGGAGACTCTTTGG 59.179 60.000 1.74 0.00 45.83 3.28
2826 2830 0.820871 CCGAGGAGGGAGACTCTTTG 59.179 60.000 1.74 0.00 45.83 2.77
2827 2831 0.705253 TCCGAGGAGGGAGACTCTTT 59.295 55.000 1.74 0.00 45.83 2.52
2828 2832 0.705253 TTCCGAGGAGGGAGACTCTT 59.295 55.000 1.74 0.00 45.83 2.85
2829 2833 0.705253 TTTCCGAGGAGGGAGACTCT 59.295 55.000 1.74 0.00 45.83 3.24
2830 2834 1.410882 CATTTCCGAGGAGGGAGACTC 59.589 57.143 0.00 0.00 45.84 3.36
2831 2835 1.490574 CATTTCCGAGGAGGGAGACT 58.509 55.000 0.00 0.00 41.52 3.24
2832 2836 0.179070 GCATTTCCGAGGAGGGAGAC 60.179 60.000 0.00 0.00 41.52 3.36
2833 2837 0.617535 TGCATTTCCGAGGAGGGAGA 60.618 55.000 0.00 0.00 41.52 3.71
2834 2838 0.179062 CTGCATTTCCGAGGAGGGAG 60.179 60.000 0.00 0.00 41.52 4.30
2835 2839 1.626356 CCTGCATTTCCGAGGAGGGA 61.626 60.000 0.00 0.00 39.43 4.20
2869 2873 1.957562 CGGACACGTTGAGGAGAGT 59.042 57.895 0.00 0.00 34.81 3.24
2917 2921 2.738521 CAGGGCCGACACGTTCAG 60.739 66.667 0.00 0.00 0.00 3.02
3112 3116 4.166011 GATGTGCACCTTCGCGGC 62.166 66.667 15.69 0.79 35.61 6.53
3315 3319 2.860293 GGCATCACGTCCGTGTTG 59.140 61.111 20.73 20.73 45.55 3.33
3813 3817 0.973496 GCGGGAGGAGGAAGAAGTCT 60.973 60.000 0.00 0.00 0.00 3.24
4146 4150 2.482333 CCGCTCGTAGACCCTGGAG 61.482 68.421 0.00 0.00 0.00 3.86
4405 4439 6.670027 TGGGCTTTTTAAAATTAGGGAGCATA 59.330 34.615 17.38 6.79 0.00 3.14
4407 4441 4.841246 TGGGCTTTTTAAAATTAGGGAGCA 59.159 37.500 17.38 1.03 0.00 4.26
4411 4445 7.164803 TGAATGTGGGCTTTTTAAAATTAGGG 58.835 34.615 0.55 0.00 0.00 3.53
4426 4460 6.024552 TGAAGACTTTAATTGAATGTGGGC 57.975 37.500 0.00 0.00 0.00 5.36
4428 4462 9.533253 ACTTTTGAAGACTTTAATTGAATGTGG 57.467 29.630 0.00 0.00 0.00 4.17
4440 4474 5.720202 GGTGACCAAACTTTTGAAGACTTT 58.280 37.500 0.00 0.00 40.55 2.66
4442 4476 4.983671 GGTGACCAAACTTTTGAAGACT 57.016 40.909 0.00 0.00 40.55 3.24
4471 4508 6.569610 GCTTTTGAGAAATTGTTGACCCGATA 60.570 38.462 0.00 0.00 0.00 2.92
4473 4510 4.499019 GCTTTTGAGAAATTGTTGACCCGA 60.499 41.667 0.00 0.00 0.00 5.14
4475 4512 4.948847 AGCTTTTGAGAAATTGTTGACCC 58.051 39.130 0.00 0.00 0.00 4.46
4527 4564 7.126061 AGGCCTTAAAAATTAGGAAGCATAGT 58.874 34.615 0.00 0.00 33.13 2.12
4528 4565 7.285401 TGAGGCCTTAAAAATTAGGAAGCATAG 59.715 37.037 6.77 0.00 33.13 2.23
4601 4638 5.355910 GCTCCTTAATAAATTGTTGACCCGA 59.644 40.000 0.00 0.00 0.00 5.14
4618 4655 9.739276 TGAATTAAAAGAATTGAGAGCTCCTTA 57.261 29.630 10.93 0.00 0.00 2.69
4658 4698 8.367156 CCCCAATTGAATAGAAGAGTTTCAAAA 58.633 33.333 7.12 0.00 41.26 2.44
4659 4699 7.508977 ACCCCAATTGAATAGAAGAGTTTCAAA 59.491 33.333 7.12 0.00 41.26 2.69
4665 4705 4.018050 AGCACCCCAATTGAATAGAAGAGT 60.018 41.667 7.12 0.00 0.00 3.24
4671 4711 5.603170 AATTGAGCACCCCAATTGAATAG 57.397 39.130 7.12 0.00 41.20 1.73
4672 4712 6.171921 CAAAATTGAGCACCCCAATTGAATA 58.828 36.000 7.12 0.00 41.71 1.75
4677 4717 2.978278 TCCAAAATTGAGCACCCCAATT 59.022 40.909 0.00 0.00 43.66 2.32
4682 4722 3.253230 CGAAATCCAAAATTGAGCACCC 58.747 45.455 0.00 0.00 0.00 4.61
4686 4726 7.810766 TCATAAACGAAATCCAAAATTGAGC 57.189 32.000 0.00 0.00 0.00 4.26
4697 4737 6.237201 GCACGGTCAAAATCATAAACGAAATC 60.237 38.462 0.00 0.00 0.00 2.17
4702 4742 3.168193 GGCACGGTCAAAATCATAAACG 58.832 45.455 0.00 0.00 0.00 3.60
4708 4748 1.393603 TGTTGGCACGGTCAAAATCA 58.606 45.000 0.00 0.00 0.00 2.57
4717 4757 4.272018 TGATTTGAAAAATTGTTGGCACGG 59.728 37.500 0.00 0.00 0.00 4.94
4718 4758 5.401033 TGATTTGAAAAATTGTTGGCACG 57.599 34.783 0.00 0.00 0.00 5.34
4720 4760 7.563888 TGATTGATTTGAAAAATTGTTGGCA 57.436 28.000 0.00 0.00 0.00 4.92
4750 4817 8.855110 TGATTGATATGTTTTTATATGCCGGTT 58.145 29.630 1.90 0.00 0.00 4.44
4797 5007 7.054124 GGGAGATGATGGAGTGTGTTTTATTA 58.946 38.462 0.00 0.00 0.00 0.98
4812 5022 1.150081 GCAGGTGGGGGAGATGATG 59.850 63.158 0.00 0.00 0.00 3.07
4815 5025 2.153898 TTTGGCAGGTGGGGGAGATG 62.154 60.000 0.00 0.00 0.00 2.90
4972 5182 8.588472 TCAAGTCGGTATGATGAGATTTATCAT 58.412 33.333 0.00 0.00 44.86 2.45
5116 5333 0.033601 TGCCTTGTTGTCCAGTTGGT 60.034 50.000 0.00 0.00 36.34 3.67
5118 5335 1.102154 TGTGCCTTGTTGTCCAGTTG 58.898 50.000 0.00 0.00 0.00 3.16
5122 5339 1.454847 GGGTGTGCCTTGTTGTCCA 60.455 57.895 0.00 0.00 34.45 4.02
5124 5341 0.102300 GTTGGGTGTGCCTTGTTGTC 59.898 55.000 0.00 0.00 34.45 3.18
5125 5342 1.326951 GGTTGGGTGTGCCTTGTTGT 61.327 55.000 0.00 0.00 34.45 3.32
5132 5349 0.468400 TTACAAGGGTTGGGTGTGCC 60.468 55.000 0.00 0.00 34.12 5.01
5135 5352 3.386402 CACAAATTACAAGGGTTGGGTGT 59.614 43.478 0.00 0.00 34.12 4.16
5136 5353 3.801983 GCACAAATTACAAGGGTTGGGTG 60.802 47.826 0.00 0.00 34.12 4.61
5137 5354 2.367241 GCACAAATTACAAGGGTTGGGT 59.633 45.455 0.00 0.00 34.12 4.51
5139 5356 2.366916 TGGCACAAATTACAAGGGTTGG 59.633 45.455 0.00 0.00 31.92 3.77
5158 5375 2.487934 CTCTAATGTGGCCGAGATTGG 58.512 52.381 0.00 0.28 0.00 3.16
5159 5376 2.487934 CCTCTAATGTGGCCGAGATTG 58.512 52.381 0.00 0.00 0.00 2.67
5160 5377 1.202698 GCCTCTAATGTGGCCGAGATT 60.203 52.381 0.00 0.43 44.54 2.40
5161 5378 0.394565 GCCTCTAATGTGGCCGAGAT 59.605 55.000 0.00 0.00 44.54 2.75
5162 5379 1.823295 GCCTCTAATGTGGCCGAGA 59.177 57.895 0.00 0.00 44.54 4.04
5163 5380 4.445699 GCCTCTAATGTGGCCGAG 57.554 61.111 0.00 0.00 44.54 4.63
5168 5385 2.205074 CGTGCTTAGCCTCTAATGTGG 58.795 52.381 0.29 0.00 0.00 4.17
5169 5386 1.594862 GCGTGCTTAGCCTCTAATGTG 59.405 52.381 0.29 0.00 0.00 3.21
5170 5387 1.482593 AGCGTGCTTAGCCTCTAATGT 59.517 47.619 0.29 0.00 34.64 2.71
5171 5388 2.231215 AGCGTGCTTAGCCTCTAATG 57.769 50.000 0.29 0.00 34.64 1.90
5172 5389 2.799917 CGAAGCGTGCTTAGCCTCTAAT 60.800 50.000 7.15 0.00 36.26 1.73
5173 5390 1.469251 CGAAGCGTGCTTAGCCTCTAA 60.469 52.381 7.15 0.00 36.26 2.10
5174 5391 0.100682 CGAAGCGTGCTTAGCCTCTA 59.899 55.000 7.15 0.00 36.26 2.43
5175 5392 1.153745 CGAAGCGTGCTTAGCCTCT 60.154 57.895 7.15 0.00 36.26 3.69
5176 5393 3.389206 CGAAGCGTGCTTAGCCTC 58.611 61.111 7.15 0.00 36.26 4.70
5194 5411 3.479269 GACTGAAGAACGGCGCGG 61.479 66.667 14.03 14.03 0.00 6.46
5195 5412 3.827784 CGACTGAAGAACGGCGCG 61.828 66.667 6.90 0.00 0.00 6.86
5196 5413 2.733593 ACGACTGAAGAACGGCGC 60.734 61.111 6.90 0.00 0.00 6.53
5197 5414 2.372690 CCACGACTGAAGAACGGCG 61.373 63.158 4.80 4.80 0.00 6.46
5198 5415 2.027625 CCCACGACTGAAGAACGGC 61.028 63.158 0.00 0.00 0.00 5.68
5199 5416 0.246635 ATCCCACGACTGAAGAACGG 59.753 55.000 0.00 0.00 0.00 4.44
5200 5417 2.080286 AATCCCACGACTGAAGAACG 57.920 50.000 0.00 0.00 0.00 3.95
5201 5418 4.566987 AGTTAATCCCACGACTGAAGAAC 58.433 43.478 0.00 0.00 0.00 3.01
5202 5419 4.527038 AGAGTTAATCCCACGACTGAAGAA 59.473 41.667 0.00 0.00 0.00 2.52
5203 5420 4.087182 AGAGTTAATCCCACGACTGAAGA 58.913 43.478 0.00 0.00 0.00 2.87
5204 5421 4.457834 AGAGTTAATCCCACGACTGAAG 57.542 45.455 0.00 0.00 0.00 3.02
5205 5422 4.884668 AAGAGTTAATCCCACGACTGAA 57.115 40.909 0.00 0.00 0.00 3.02
5206 5423 4.884668 AAAGAGTTAATCCCACGACTGA 57.115 40.909 0.00 0.00 0.00 3.41
5207 5424 4.755123 ACAAAAGAGTTAATCCCACGACTG 59.245 41.667 0.00 0.00 0.00 3.51
5208 5425 4.969484 ACAAAAGAGTTAATCCCACGACT 58.031 39.130 0.00 0.00 0.00 4.18
5209 5426 6.817140 AGATACAAAAGAGTTAATCCCACGAC 59.183 38.462 0.00 0.00 0.00 4.34
5210 5427 6.942976 AGATACAAAAGAGTTAATCCCACGA 58.057 36.000 0.00 0.00 0.00 4.35
5211 5428 7.980099 ACTAGATACAAAAGAGTTAATCCCACG 59.020 37.037 0.00 0.00 0.00 4.94
5226 5443 9.908152 CGATCACCATAATGTACTAGATACAAA 57.092 33.333 0.00 0.00 46.90 2.83
5227 5444 8.520351 CCGATCACCATAATGTACTAGATACAA 58.480 37.037 0.00 0.00 46.90 2.41
5229 5446 8.053026 ACCGATCACCATAATGTACTAGATAC 57.947 38.462 0.00 0.00 0.00 2.24
5230 5447 8.520351 CAACCGATCACCATAATGTACTAGATA 58.480 37.037 0.00 0.00 0.00 1.98
5231 5448 7.015292 ACAACCGATCACCATAATGTACTAGAT 59.985 37.037 0.00 0.00 0.00 1.98
5232 5449 6.322969 ACAACCGATCACCATAATGTACTAGA 59.677 38.462 0.00 0.00 0.00 2.43
5233 5450 6.513180 ACAACCGATCACCATAATGTACTAG 58.487 40.000 0.00 0.00 0.00 2.57
5234 5451 6.474140 ACAACCGATCACCATAATGTACTA 57.526 37.500 0.00 0.00 0.00 1.82
5235 5452 5.353394 ACAACCGATCACCATAATGTACT 57.647 39.130 0.00 0.00 0.00 2.73
5236 5453 6.431198 AAACAACCGATCACCATAATGTAC 57.569 37.500 0.00 0.00 0.00 2.90
5237 5454 8.740123 ATAAAACAACCGATCACCATAATGTA 57.260 30.769 0.00 0.00 0.00 2.29
5238 5455 5.975693 AAAACAACCGATCACCATAATGT 57.024 34.783 0.00 0.00 0.00 2.71
5239 5456 8.925161 AAATAAAACAACCGATCACCATAATG 57.075 30.769 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.