Multiple sequence alignment - TraesCS3A01G123400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G123400 chr3A 100.000 3155 0 0 1 3155 99389591 99386437 0.000000e+00 5827
1 TraesCS3A01G123400 chr3A 91.736 968 62 11 930 1897 99297673 99296724 0.000000e+00 1328
2 TraesCS3A01G123400 chr3A 76.608 342 65 9 190 522 83956259 83955924 1.160000e-39 174
3 TraesCS3A01G123400 chr3A 94.595 74 2 2 2100 2172 99296461 99296389 2.570000e-21 113
4 TraesCS3A01G123400 chr3D 91.355 1122 74 14 779 1896 83502905 83501803 0.000000e+00 1513
5 TraesCS3A01G123400 chr3D 92.982 855 58 2 2301 3155 75913400 75914252 0.000000e+00 1245
6 TraesCS3A01G123400 chr3D 91.763 862 64 6 1038 1897 83601496 83600640 0.000000e+00 1192
7 TraesCS3A01G123400 chr3D 78.212 358 61 12 1167 1516 442397582 442397930 2.470000e-51 213
8 TraesCS3A01G123400 chr7A 97.430 856 21 1 2300 3155 292853458 292852604 0.000000e+00 1458
9 TraesCS3A01G123400 chr7A 86.940 781 94 4 2301 3077 88744613 88745389 0.000000e+00 870
10 TraesCS3A01G123400 chr7A 86.044 781 101 5 2301 3077 88687464 88688240 0.000000e+00 832
11 TraesCS3A01G123400 chr2A 95.678 856 33 3 2300 3155 43918569 43919420 0.000000e+00 1373
12 TraesCS3A01G123400 chr2A 90.134 598 58 1 2299 2896 753462989 753462393 0.000000e+00 776
13 TraesCS3A01G123400 chr3B 83.683 1526 154 48 1 1507 130131523 130130074 0.000000e+00 1351
14 TraesCS3A01G123400 chr3B 90.673 847 60 12 1038 1878 130187150 130186317 0.000000e+00 1109
15 TraesCS3A01G123400 chr3B 91.176 272 17 5 1471 1735 130128758 130128487 2.310000e-96 363
16 TraesCS3A01G123400 chr3B 89.474 95 6 2 2100 2190 130128188 130128094 1.990000e-22 117
17 TraesCS3A01G123400 chr1B 90.771 856 76 3 2300 3155 535143005 535142153 0.000000e+00 1140
18 TraesCS3A01G123400 chr7B 88.628 853 91 4 2298 3145 456001818 456002669 0.000000e+00 1033
19 TraesCS3A01G123400 chr1A 94.038 520 29 2 2300 2818 495443957 495443439 0.000000e+00 787
20 TraesCS3A01G123400 chr1A 94.444 342 19 0 2814 3155 495377167 495376826 7.750000e-146 527
21 TraesCS3A01G123400 chr2B 77.684 354 62 13 1173 1518 143133066 143132722 1.920000e-47 200
22 TraesCS3A01G123400 chr2B 83.684 190 31 0 1676 1865 140520338 140520149 2.500000e-41 180
23 TraesCS3A01G123400 chr2D 77.183 355 62 15 1173 1518 90321766 90321422 4.150000e-44 189
24 TraesCS3A01G123400 chr2D 75.900 361 68 15 1167 1518 118845481 118845831 1.950000e-37 167
25 TraesCS3A01G123400 chr2D 84.106 151 24 0 1715 1865 87580532 87580382 2.540000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G123400 chr3A 99386437 99389591 3154 True 5827.000000 5827 100.0000 1 3155 1 chr3A.!!$R2 3154
1 TraesCS3A01G123400 chr3A 99296389 99297673 1284 True 720.500000 1328 93.1655 930 2172 2 chr3A.!!$R3 1242
2 TraesCS3A01G123400 chr3D 83501803 83502905 1102 True 1513.000000 1513 91.3550 779 1896 1 chr3D.!!$R1 1117
3 TraesCS3A01G123400 chr3D 75913400 75914252 852 False 1245.000000 1245 92.9820 2301 3155 1 chr3D.!!$F1 854
4 TraesCS3A01G123400 chr3D 83600640 83601496 856 True 1192.000000 1192 91.7630 1038 1897 1 chr3D.!!$R2 859
5 TraesCS3A01G123400 chr7A 292852604 292853458 854 True 1458.000000 1458 97.4300 2300 3155 1 chr7A.!!$R1 855
6 TraesCS3A01G123400 chr7A 88744613 88745389 776 False 870.000000 870 86.9400 2301 3077 1 chr7A.!!$F2 776
7 TraesCS3A01G123400 chr7A 88687464 88688240 776 False 832.000000 832 86.0440 2301 3077 1 chr7A.!!$F1 776
8 TraesCS3A01G123400 chr2A 43918569 43919420 851 False 1373.000000 1373 95.6780 2300 3155 1 chr2A.!!$F1 855
9 TraesCS3A01G123400 chr2A 753462393 753462989 596 True 776.000000 776 90.1340 2299 2896 1 chr2A.!!$R1 597
10 TraesCS3A01G123400 chr3B 130186317 130187150 833 True 1109.000000 1109 90.6730 1038 1878 1 chr3B.!!$R1 840
11 TraesCS3A01G123400 chr3B 130128094 130131523 3429 True 610.333333 1351 88.1110 1 2190 3 chr3B.!!$R2 2189
12 TraesCS3A01G123400 chr1B 535142153 535143005 852 True 1140.000000 1140 90.7710 2300 3155 1 chr1B.!!$R1 855
13 TraesCS3A01G123400 chr7B 456001818 456002669 851 False 1033.000000 1033 88.6280 2298 3145 1 chr7B.!!$F1 847
14 TraesCS3A01G123400 chr1A 495443439 495443957 518 True 787.000000 787 94.0380 2300 2818 1 chr1A.!!$R2 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 483 0.036306 AGGGGCTAGAAACGGTGTTG 59.964 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 3759 0.321653 AAAAAGACGAGGGCTGCGAT 60.322 50.0 6.55 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.146913 GAGAGGCAGCGCTCTCCT 61.147 66.667 23.54 23.54 39.96 3.69
19 20 1.826054 GAGAGGCAGCGCTCTCCTA 60.826 63.158 23.41 0.00 39.96 2.94
20 21 1.152567 AGAGGCAGCGCTCTCCTAT 60.153 57.895 23.41 19.06 30.18 2.57
21 22 1.006337 GAGGCAGCGCTCTCCTATG 60.006 63.158 23.41 6.94 0.00 2.23
22 23 1.743321 GAGGCAGCGCTCTCCTATGT 61.743 60.000 23.41 6.15 0.00 2.29
23 24 1.144936 GGCAGCGCTCTCCTATGTT 59.855 57.895 7.13 0.00 0.00 2.71
24 25 1.156645 GGCAGCGCTCTCCTATGTTG 61.157 60.000 7.13 0.00 0.00 3.33
28 29 1.592669 CGCTCTCCTATGTTGGGCG 60.593 63.158 0.00 0.00 35.54 6.13
29 30 1.227674 GCTCTCCTATGTTGGGCGG 60.228 63.158 0.00 0.00 0.00 6.13
30 31 1.686325 GCTCTCCTATGTTGGGCGGA 61.686 60.000 0.00 0.00 0.00 5.54
62 64 0.456653 GCGCCGCATGAATTCTTGTT 60.457 50.000 19.25 0.00 0.00 2.83
77 79 5.929697 TTCTTGTTGTTCTGTCATGCTAG 57.070 39.130 0.00 0.00 0.00 3.42
107 109 6.615726 AGTGATATGTGGTGTATAAAGGGAGT 59.384 38.462 0.00 0.00 0.00 3.85
112 114 5.697067 TGTGGTGTATAAAGGGAGTGTTTT 58.303 37.500 0.00 0.00 0.00 2.43
115 117 7.163441 GTGGTGTATAAAGGGAGTGTTTTAGA 58.837 38.462 0.00 0.00 0.00 2.10
121 123 9.948964 GTATAAAGGGAGTGTTTTAGAGGTTTA 57.051 33.333 0.00 0.00 0.00 2.01
122 124 8.859236 ATAAAGGGAGTGTTTTAGAGGTTTAC 57.141 34.615 0.00 0.00 0.00 2.01
123 125 5.899631 AGGGAGTGTTTTAGAGGTTTACA 57.100 39.130 0.00 0.00 0.00 2.41
124 126 5.866207 AGGGAGTGTTTTAGAGGTTTACAG 58.134 41.667 0.00 0.00 0.00 2.74
125 127 5.368816 AGGGAGTGTTTTAGAGGTTTACAGT 59.631 40.000 0.00 0.00 0.00 3.55
126 128 6.060136 GGGAGTGTTTTAGAGGTTTACAGTT 58.940 40.000 0.00 0.00 0.00 3.16
127 129 6.204301 GGGAGTGTTTTAGAGGTTTACAGTTC 59.796 42.308 0.00 0.00 0.00 3.01
128 130 6.764560 GGAGTGTTTTAGAGGTTTACAGTTCA 59.235 38.462 0.00 0.00 0.00 3.18
129 131 7.444487 GGAGTGTTTTAGAGGTTTACAGTTCAT 59.556 37.037 0.00 0.00 0.00 2.57
130 132 8.154649 AGTGTTTTAGAGGTTTACAGTTCATG 57.845 34.615 0.00 0.00 0.00 3.07
131 133 7.228706 AGTGTTTTAGAGGTTTACAGTTCATGG 59.771 37.037 0.00 0.00 0.00 3.66
132 134 6.488683 TGTTTTAGAGGTTTACAGTTCATGGG 59.511 38.462 0.00 0.00 0.00 4.00
144 146 0.770499 TTCATGGGAAGCAGACCACA 59.230 50.000 0.00 0.00 40.05 4.17
148 150 1.352622 TGGGAAGCAGACCACACCTT 61.353 55.000 0.00 0.00 0.00 3.50
153 155 2.664402 AGCAGACCACACCTTCAAAT 57.336 45.000 0.00 0.00 0.00 2.32
160 162 4.583073 AGACCACACCTTCAAATGGTTTAC 59.417 41.667 0.00 0.00 45.55 2.01
163 165 4.533222 CACACCTTCAAATGGTTTACGAC 58.467 43.478 0.00 0.00 35.28 4.34
184 186 2.360852 GCAGCAGGCAGTGGATGT 60.361 61.111 0.00 0.00 43.97 3.06
185 187 1.975407 GCAGCAGGCAGTGGATGTT 60.975 57.895 0.00 0.00 43.97 2.71
186 188 1.530013 GCAGCAGGCAGTGGATGTTT 61.530 55.000 0.00 0.00 43.97 2.83
187 189 1.825090 CAGCAGGCAGTGGATGTTTA 58.175 50.000 0.00 0.00 0.00 2.01
188 190 1.470098 CAGCAGGCAGTGGATGTTTAC 59.530 52.381 0.00 0.00 0.00 2.01
194 196 2.356135 GCAGTGGATGTTTACGGATGT 58.644 47.619 0.00 0.00 0.00 3.06
200 202 6.148811 CAGTGGATGTTTACGGATGTTTACTT 59.851 38.462 0.00 0.00 0.00 2.24
209 211 7.556733 TTACGGATGTTTACTTCAAGTTTGT 57.443 32.000 0.00 0.00 0.00 2.83
217 219 2.879826 ACTTCAAGTTTGTGCACAAGC 58.120 42.857 31.86 31.86 37.15 4.01
232 234 3.318886 CACAAGCATGCAAGCAATGTTA 58.681 40.909 21.98 0.00 35.53 2.41
250 252 3.271729 GTTAAAGTAGGCAAGGCTCCTC 58.728 50.000 0.00 0.00 35.21 3.71
251 253 0.621082 AAAGTAGGCAAGGCTCCTCC 59.379 55.000 0.00 0.00 35.21 4.30
253 255 0.980231 AGTAGGCAAGGCTCCTCCAG 60.980 60.000 0.00 0.00 37.29 3.86
260 262 1.140312 AAGGCTCCTCCAGTGTTTGA 58.860 50.000 0.00 0.00 37.29 2.69
272 277 5.496556 TCCAGTGTTTGAGAAGAACTTCAA 58.503 37.500 15.43 1.84 41.84 2.69
285 290 4.641396 AGAACTTCAACATCATCGTCCAA 58.359 39.130 0.00 0.00 0.00 3.53
291 296 6.151648 ACTTCAACATCATCGTCCAATTCATT 59.848 34.615 0.00 0.00 0.00 2.57
301 306 6.421377 TCGTCCAATTCATTGTGATTGTAG 57.579 37.500 11.64 5.83 36.06 2.74
322 327 6.483974 TGTAGTGTCGTTTTATTGGTGTGATT 59.516 34.615 0.00 0.00 0.00 2.57
334 339 2.300437 TGGTGTGATTGGTGTGATCGTA 59.700 45.455 0.00 0.00 0.00 3.43
336 341 3.309682 GGTGTGATTGGTGTGATCGTATG 59.690 47.826 0.00 0.00 0.00 2.39
339 344 5.005394 GTGTGATTGGTGTGATCGTATGTAC 59.995 44.000 0.00 0.00 0.00 2.90
340 345 4.506654 GTGATTGGTGTGATCGTATGTACC 59.493 45.833 0.00 0.00 0.00 3.34
365 370 5.584649 GTGTAGTTGATAAGCTTGCCACATA 59.415 40.000 9.86 0.07 0.00 2.29
369 374 4.077300 TGATAAGCTTGCCACATAGGAG 57.923 45.455 9.86 0.00 41.22 3.69
370 375 3.455910 TGATAAGCTTGCCACATAGGAGT 59.544 43.478 9.86 0.00 41.22 3.85
372 377 3.550437 AAGCTTGCCACATAGGAGTAG 57.450 47.619 0.00 0.00 41.22 2.57
393 398 4.040755 AGGATACAAGGTAAGCAGACCAT 58.959 43.478 9.49 0.00 40.16 3.55
435 440 0.038892 TCGTGTCGTTGTAAGAGCCC 60.039 55.000 0.00 0.00 0.00 5.19
437 442 1.870580 CGTGTCGTTGTAAGAGCCCAA 60.871 52.381 0.00 0.00 0.00 4.12
460 465 0.390124 ATGCAGGCAACCAAACACAG 59.610 50.000 0.00 0.00 37.17 3.66
465 470 2.133641 GCAACCAAACACAGGGGCT 61.134 57.895 0.00 0.00 0.00 5.19
476 481 1.125711 ACAGGGGCTAGAAACGGTGT 61.126 55.000 0.00 0.00 0.00 4.16
478 483 0.036306 AGGGGCTAGAAACGGTGTTG 59.964 55.000 0.00 0.00 0.00 3.33
482 487 2.423577 GGCTAGAAACGGTGTTGTGAT 58.576 47.619 0.00 0.00 0.00 3.06
484 489 2.806244 GCTAGAAACGGTGTTGTGATGT 59.194 45.455 0.00 0.00 0.00 3.06
486 491 4.630069 GCTAGAAACGGTGTTGTGATGTAT 59.370 41.667 0.00 0.00 0.00 2.29
491 496 3.745799 ACGGTGTTGTGATGTATGGAAA 58.254 40.909 0.00 0.00 0.00 3.13
492 497 4.331968 ACGGTGTTGTGATGTATGGAAAT 58.668 39.130 0.00 0.00 0.00 2.17
497 502 6.321181 GGTGTTGTGATGTATGGAAATGGTAT 59.679 38.462 0.00 0.00 0.00 2.73
499 504 6.889177 TGTTGTGATGTATGGAAATGGTATGT 59.111 34.615 0.00 0.00 0.00 2.29
501 506 8.559536 GTTGTGATGTATGGAAATGGTATGTAG 58.440 37.037 0.00 0.00 0.00 2.74
511 516 6.207810 TGGAAATGGTATGTAGACAACCAAAC 59.792 38.462 15.77 11.53 45.91 2.93
513 518 7.255660 GGAAATGGTATGTAGACAACCAAACAA 60.256 37.037 15.77 0.13 45.91 2.83
515 520 5.437946 TGGTATGTAGACAACCAAACAACA 58.562 37.500 11.75 0.00 40.28 3.33
518 523 4.300189 TGTAGACAACCAAACAACATGC 57.700 40.909 0.00 0.00 0.00 4.06
520 525 3.883830 AGACAACCAAACAACATGCAA 57.116 38.095 0.00 0.00 0.00 4.08
525 530 4.094590 ACAACCAAACAACATGCAAATGTG 59.905 37.500 0.00 0.00 34.56 3.21
533 538 4.034279 ACAACATGCAAATGTGTTTTCTGC 59.966 37.500 0.65 0.00 36.48 4.26
534 539 3.794717 ACATGCAAATGTGTTTTCTGCA 58.205 36.364 0.00 0.00 32.79 4.41
555 561 5.913137 CATTATTTGCTTAACCAGACCCA 57.087 39.130 0.00 0.00 0.00 4.51
556 562 6.469782 CATTATTTGCTTAACCAGACCCAT 57.530 37.500 0.00 0.00 0.00 4.00
557 563 5.913137 TTATTTGCTTAACCAGACCCATG 57.087 39.130 0.00 0.00 0.00 3.66
558 564 2.969821 TTGCTTAACCAGACCCATGT 57.030 45.000 0.00 0.00 0.00 3.21
559 565 2.198827 TGCTTAACCAGACCCATGTG 57.801 50.000 0.00 0.00 0.00 3.21
560 566 1.271871 TGCTTAACCAGACCCATGTGG 60.272 52.381 0.00 0.00 45.10 4.17
561 567 1.004277 GCTTAACCAGACCCATGTGGA 59.996 52.381 7.06 0.00 42.06 4.02
562 568 2.554344 GCTTAACCAGACCCATGTGGAA 60.554 50.000 7.06 0.00 42.06 3.53
564 570 2.765689 AACCAGACCCATGTGGAAAA 57.234 45.000 7.06 0.00 42.06 2.29
565 571 2.765689 ACCAGACCCATGTGGAAAAA 57.234 45.000 7.06 0.00 42.06 1.94
597 603 0.527565 GACGATGCTGGCAACCAAAT 59.472 50.000 0.00 0.00 30.80 2.32
598 604 0.968405 ACGATGCTGGCAACCAAATT 59.032 45.000 0.00 0.00 30.80 1.82
599 605 2.163412 GACGATGCTGGCAACCAAATTA 59.837 45.455 0.00 0.00 30.80 1.40
600 606 2.094752 ACGATGCTGGCAACCAAATTAC 60.095 45.455 0.00 0.00 30.80 1.89
617 623 5.767816 AATTACGTCCAAAGAAGCAAGTT 57.232 34.783 0.00 0.00 0.00 2.66
633 639 3.429410 GCAAGTTGCTTGAGGTTTCAGTT 60.429 43.478 20.71 0.00 43.42 3.16
634 640 4.747810 CAAGTTGCTTGAGGTTTCAGTTT 58.252 39.130 2.98 0.00 43.42 2.66
635 641 4.639135 AGTTGCTTGAGGTTTCAGTTTC 57.361 40.909 0.00 0.00 34.15 2.78
636 642 3.381590 AGTTGCTTGAGGTTTCAGTTTCC 59.618 43.478 0.00 0.00 34.15 3.13
637 643 3.297134 TGCTTGAGGTTTCAGTTTCCT 57.703 42.857 0.00 0.00 34.15 3.36
638 644 2.951642 TGCTTGAGGTTTCAGTTTCCTG 59.048 45.455 0.00 0.00 40.25 3.86
639 645 2.294512 GCTTGAGGTTTCAGTTTCCTGG 59.705 50.000 0.00 0.00 39.31 4.45
640 646 1.981256 TGAGGTTTCAGTTTCCTGGC 58.019 50.000 0.00 0.00 39.31 4.85
641 647 1.214175 TGAGGTTTCAGTTTCCTGGCA 59.786 47.619 0.00 0.00 39.31 4.92
646 652 0.401738 TTCAGTTTCCTGGCAGAGGG 59.598 55.000 17.94 0.00 43.06 4.30
698 704 3.860930 TTCGCCCCAACTCCAAGCC 62.861 63.158 0.00 0.00 0.00 4.35
708 714 2.278332 ACTCCAAGCCAAGTTCTTCC 57.722 50.000 0.00 0.00 0.00 3.46
709 715 1.494721 ACTCCAAGCCAAGTTCTTCCA 59.505 47.619 0.00 0.00 0.00 3.53
710 716 1.882623 CTCCAAGCCAAGTTCTTCCAC 59.117 52.381 0.00 0.00 0.00 4.02
750 768 3.121030 CAAGCTTGCCCGGTCGAG 61.121 66.667 14.65 0.00 0.00 4.04
753 771 4.143333 GCTTGCCCGGTCGAGCTA 62.143 66.667 17.61 0.84 39.74 3.32
754 772 2.815308 CTTGCCCGGTCGAGCTAT 59.185 61.111 13.48 0.00 0.00 2.97
755 773 1.300233 CTTGCCCGGTCGAGCTATC 60.300 63.158 13.48 1.71 0.00 2.08
765 783 3.564637 CGAGCTATCGTATCGTCCG 57.435 57.895 0.00 0.00 44.09 4.79
766 784 0.094901 CGAGCTATCGTATCGTCCGG 59.905 60.000 0.00 0.00 44.09 5.14
767 785 1.436600 GAGCTATCGTATCGTCCGGA 58.563 55.000 0.00 0.00 0.00 5.14
768 786 1.394227 GAGCTATCGTATCGTCCGGAG 59.606 57.143 3.06 0.00 0.00 4.63
769 787 0.179194 GCTATCGTATCGTCCGGAGC 60.179 60.000 3.06 0.00 0.00 4.70
770 788 1.440708 CTATCGTATCGTCCGGAGCT 58.559 55.000 3.06 0.00 0.00 4.09
771 789 1.394227 CTATCGTATCGTCCGGAGCTC 59.606 57.143 3.06 4.71 0.00 4.09
772 790 1.235948 ATCGTATCGTCCGGAGCTCC 61.236 60.000 23.79 23.79 0.00 4.70
852 871 0.480690 TTTAGGGAAAGCAGGCACCA 59.519 50.000 0.00 0.00 0.00 4.17
976 1004 2.950877 GAGACATTCTCGACTGCCG 58.049 57.895 0.00 0.00 33.35 5.69
977 1005 0.526524 GAGACATTCTCGACTGCCGG 60.527 60.000 0.00 0.00 39.14 6.13
997 1025 4.222847 GCCGCCCCCTCTTCTACG 62.223 72.222 0.00 0.00 0.00 3.51
1468 1497 1.374252 GACACCAACGCATCCTCGT 60.374 57.895 0.00 0.00 45.58 4.18
1472 1501 0.250124 ACCAACGCATCCTCGTCAAA 60.250 50.000 0.00 0.00 42.46 2.69
1589 2981 0.384309 GATGTACTCGTCGCCATGGA 59.616 55.000 18.40 0.00 0.00 3.41
1897 3289 1.968310 ACTGGCGGTGAGTTCTCTC 59.032 57.895 0.00 0.00 40.79 3.20
1898 3290 0.827925 ACTGGCGGTGAGTTCTCTCA 60.828 55.000 0.00 0.00 46.85 3.27
1908 3331 3.225940 TGAGTTCTCTCAAGCTCTCACA 58.774 45.455 0.00 0.00 46.17 3.58
1923 3346 4.457257 GCTCTCACAGACAAAAATAGGCTT 59.543 41.667 0.00 0.00 0.00 4.35
1926 3349 6.061441 TCTCACAGACAAAAATAGGCTTCAA 58.939 36.000 0.00 0.00 0.00 2.69
1927 3350 6.716628 TCTCACAGACAAAAATAGGCTTCAAT 59.283 34.615 0.00 0.00 0.00 2.57
1928 3351 6.913170 TCACAGACAAAAATAGGCTTCAATC 58.087 36.000 0.00 0.00 0.00 2.67
1931 3354 7.540055 CACAGACAAAAATAGGCTTCAATCTTC 59.460 37.037 0.00 0.00 0.00 2.87
1932 3355 7.231317 ACAGACAAAAATAGGCTTCAATCTTCA 59.769 33.333 0.00 0.00 0.00 3.02
1933 3356 8.248945 CAGACAAAAATAGGCTTCAATCTTCAT 58.751 33.333 0.00 0.00 0.00 2.57
1934 3357 8.465201 AGACAAAAATAGGCTTCAATCTTCATC 58.535 33.333 0.00 0.00 0.00 2.92
1935 3358 7.253422 ACAAAAATAGGCTTCAATCTTCATCG 58.747 34.615 0.00 0.00 0.00 3.84
1936 3359 7.094205 ACAAAAATAGGCTTCAATCTTCATCGT 60.094 33.333 0.00 0.00 0.00 3.73
1937 3360 6.610741 AAATAGGCTTCAATCTTCATCGTC 57.389 37.500 0.00 0.00 0.00 4.20
1938 3361 2.544685 AGGCTTCAATCTTCATCGTCG 58.455 47.619 0.00 0.00 0.00 5.12
1939 3362 2.093973 AGGCTTCAATCTTCATCGTCGT 60.094 45.455 0.00 0.00 0.00 4.34
1940 3363 2.282820 GGCTTCAATCTTCATCGTCGTC 59.717 50.000 0.00 0.00 0.00 4.20
1941 3364 3.182967 GCTTCAATCTTCATCGTCGTCT 58.817 45.455 0.00 0.00 0.00 4.18
1942 3365 3.614616 GCTTCAATCTTCATCGTCGTCTT 59.385 43.478 0.00 0.00 0.00 3.01
1943 3366 4.259610 GCTTCAATCTTCATCGTCGTCTTC 60.260 45.833 0.00 0.00 0.00 2.87
1944 3367 4.703645 TCAATCTTCATCGTCGTCTTCT 57.296 40.909 0.00 0.00 0.00 2.85
1953 3376 4.994852 TCATCGTCGTCTTCTTTCCAAAAT 59.005 37.500 0.00 0.00 0.00 1.82
1954 3377 5.468746 TCATCGTCGTCTTCTTTCCAAAATT 59.531 36.000 0.00 0.00 0.00 1.82
1960 3383 6.853362 GTCGTCTTCTTTCCAAAATTTCTCAG 59.147 38.462 0.00 0.00 0.00 3.35
1967 3390 4.008074 TCCAAAATTTCTCAGCGAGAGT 57.992 40.909 8.71 1.04 44.98 3.24
1968 3391 5.147330 TCCAAAATTTCTCAGCGAGAGTA 57.853 39.130 8.71 0.00 44.98 2.59
1969 3392 4.929808 TCCAAAATTTCTCAGCGAGAGTAC 59.070 41.667 8.71 0.00 44.98 2.73
1970 3393 4.690748 CCAAAATTTCTCAGCGAGAGTACA 59.309 41.667 8.71 0.00 44.98 2.90
1971 3394 5.163913 CCAAAATTTCTCAGCGAGAGTACAG 60.164 44.000 8.71 1.24 44.98 2.74
1972 3395 4.792521 AATTTCTCAGCGAGAGTACAGT 57.207 40.909 8.71 0.00 44.98 3.55
1973 3396 5.899120 AATTTCTCAGCGAGAGTACAGTA 57.101 39.130 8.71 0.00 44.98 2.74
1974 3397 6.458232 AATTTCTCAGCGAGAGTACAGTAT 57.542 37.500 8.71 0.00 44.98 2.12
1983 3406 8.986847 TCAGCGAGAGTACAGTATAACTAATAC 58.013 37.037 0.00 0.00 40.80 1.89
1986 3409 8.161610 GCGAGAGTACAGTATAACTAATACTCG 58.838 40.741 16.91 0.00 46.50 4.18
2000 3424 6.301486 ACTAATACTCGGGTTTTGTTTTCCT 58.699 36.000 0.00 0.00 0.00 3.36
2005 3429 3.881089 CTCGGGTTTTGTTTTCCTACAGT 59.119 43.478 0.00 0.00 0.00 3.55
2007 3431 5.435291 TCGGGTTTTGTTTTCCTACAGTTA 58.565 37.500 0.00 0.00 0.00 2.24
2009 3433 6.016943 TCGGGTTTTGTTTTCCTACAGTTATG 60.017 38.462 0.00 0.00 0.00 1.90
2010 3434 5.924254 GGGTTTTGTTTTCCTACAGTTATGC 59.076 40.000 0.00 0.00 0.00 3.14
2011 3435 6.239204 GGGTTTTGTTTTCCTACAGTTATGCT 60.239 38.462 0.00 0.00 0.00 3.79
2014 3438 8.565416 GTTTTGTTTTCCTACAGTTATGCTACT 58.435 33.333 0.00 0.00 0.00 2.57
2036 3460 3.070302 TGGTGGCATTCGTGCTATGTATA 59.930 43.478 0.00 0.00 34.73 1.47
2039 3463 5.181245 GGTGGCATTCGTGCTATGTATATTT 59.819 40.000 0.00 0.00 34.73 1.40
2040 3464 6.370442 GGTGGCATTCGTGCTATGTATATTTA 59.630 38.462 0.00 0.00 34.73 1.40
2061 3485 2.672996 GAGGCGCATGTGGGTGTT 60.673 61.111 10.83 0.00 0.00 3.32
2067 3491 0.317770 CGCATGTGGGTGTTTGTGTC 60.318 55.000 0.00 0.00 0.00 3.67
2070 3494 1.337703 CATGTGGGTGTTTGTGTCCTG 59.662 52.381 0.00 0.00 0.00 3.86
2085 3509 3.008049 GTGTCCTGTACCCTGATGAAGTT 59.992 47.826 0.00 0.00 0.00 2.66
2109 3581 9.118236 GTTGAGAAAGAAGGATAAAATTCGTTG 57.882 33.333 0.00 0.00 29.20 4.10
2129 3602 4.248691 TGCAACGATATCAGAGATCAGG 57.751 45.455 5.88 0.00 0.00 3.86
2192 3668 9.896645 ATTGCATACTCTGTATATCTTAATGGG 57.103 33.333 0.00 0.00 0.00 4.00
2193 3669 8.664669 TGCATACTCTGTATATCTTAATGGGA 57.335 34.615 0.00 0.00 0.00 4.37
2194 3670 9.100197 TGCATACTCTGTATATCTTAATGGGAA 57.900 33.333 0.00 0.00 0.00 3.97
2195 3671 9.944376 GCATACTCTGTATATCTTAATGGGAAA 57.056 33.333 0.00 0.00 0.00 3.13
2198 3674 6.929606 ACTCTGTATATCTTAATGGGAAACGC 59.070 38.462 0.00 0.00 0.00 4.84
2199 3675 7.062749 TCTGTATATCTTAATGGGAAACGCT 57.937 36.000 0.00 0.00 0.00 5.07
2200 3676 7.506114 TCTGTATATCTTAATGGGAAACGCTT 58.494 34.615 0.00 0.00 0.00 4.68
2201 3677 7.656137 TCTGTATATCTTAATGGGAAACGCTTC 59.344 37.037 0.00 0.00 0.00 3.86
2209 3685 3.917072 GGAAACGCTTCCTCTCAGT 57.083 52.632 10.41 0.00 46.80 3.41
2211 3687 2.882324 GGAAACGCTTCCTCTCAGTAG 58.118 52.381 10.41 0.00 46.80 2.57
2212 3688 2.231721 GGAAACGCTTCCTCTCAGTAGT 59.768 50.000 10.41 0.00 46.80 2.73
2213 3689 3.503891 GAAACGCTTCCTCTCAGTAGTC 58.496 50.000 0.00 0.00 0.00 2.59
2214 3690 2.500392 ACGCTTCCTCTCAGTAGTCT 57.500 50.000 0.00 0.00 0.00 3.24
2215 3691 2.088423 ACGCTTCCTCTCAGTAGTCTG 58.912 52.381 0.00 0.00 42.54 3.51
2216 3692 2.290387 ACGCTTCCTCTCAGTAGTCTGA 60.290 50.000 0.00 0.00 46.85 3.27
2230 3706 7.268586 TCAGTAGTCTGATATGAAAGCTTTCC 58.731 38.462 31.14 18.57 44.58 3.13
2231 3707 7.124901 TCAGTAGTCTGATATGAAAGCTTTCCT 59.875 37.037 31.14 25.02 44.58 3.36
2232 3708 7.437862 CAGTAGTCTGATATGAAAGCTTTCCTC 59.562 40.741 31.14 24.32 43.76 3.71
2233 3709 6.305272 AGTCTGATATGAAAGCTTTCCTCA 57.695 37.500 31.14 26.72 36.36 3.86
2234 3710 6.897986 AGTCTGATATGAAAGCTTTCCTCAT 58.102 36.000 31.14 22.68 36.36 2.90
2235 3711 8.027524 AGTCTGATATGAAAGCTTTCCTCATA 57.972 34.615 31.14 23.87 36.69 2.15
2236 3712 7.930865 AGTCTGATATGAAAGCTTTCCTCATAC 59.069 37.037 31.14 27.41 35.46 2.39
2237 3713 7.172361 GTCTGATATGAAAGCTTTCCTCATACC 59.828 40.741 31.14 17.65 35.46 2.73
2238 3714 6.899089 TGATATGAAAGCTTTCCTCATACCA 58.101 36.000 31.14 19.75 35.46 3.25
2239 3715 6.767902 TGATATGAAAGCTTTCCTCATACCAC 59.232 38.462 31.14 18.59 35.46 4.16
2240 3716 4.640771 TGAAAGCTTTCCTCATACCACT 57.359 40.909 31.14 0.00 36.36 4.00
2241 3717 4.579869 TGAAAGCTTTCCTCATACCACTC 58.420 43.478 31.14 7.74 36.36 3.51
2242 3718 3.636153 AAGCTTTCCTCATACCACTCC 57.364 47.619 0.00 0.00 0.00 3.85
2243 3719 1.482593 AGCTTTCCTCATACCACTCCG 59.517 52.381 0.00 0.00 0.00 4.63
2244 3720 1.473434 GCTTTCCTCATACCACTCCGG 60.473 57.143 0.00 0.00 42.50 5.14
2253 3729 3.817787 CCACTCCGGTATCGTCGA 58.182 61.111 0.00 0.00 33.95 4.20
2254 3730 2.328235 CCACTCCGGTATCGTCGAT 58.672 57.895 13.16 13.16 33.95 3.59
2255 3731 1.516161 CCACTCCGGTATCGTCGATA 58.484 55.000 10.91 10.91 33.95 2.92
2256 3732 1.196354 CCACTCCGGTATCGTCGATAC 59.804 57.143 29.28 29.28 42.75 2.24
2257 3733 1.869132 CACTCCGGTATCGTCGATACA 59.131 52.381 34.51 20.27 44.58 2.29
2258 3734 2.096367 CACTCCGGTATCGTCGATACAG 60.096 54.545 34.51 31.30 44.58 2.74
2259 3735 2.141517 CTCCGGTATCGTCGATACAGT 58.858 52.381 34.51 8.85 44.58 3.55
2260 3736 2.547211 CTCCGGTATCGTCGATACAGTT 59.453 50.000 34.51 8.17 44.58 3.16
2261 3737 2.945008 TCCGGTATCGTCGATACAGTTT 59.055 45.455 34.51 7.49 44.58 2.66
2262 3738 3.378112 TCCGGTATCGTCGATACAGTTTT 59.622 43.478 34.51 6.81 44.58 2.43
2263 3739 4.574421 TCCGGTATCGTCGATACAGTTTTA 59.426 41.667 34.51 18.90 44.58 1.52
2264 3740 5.065859 TCCGGTATCGTCGATACAGTTTTAA 59.934 40.000 34.51 17.08 44.58 1.52
2265 3741 5.397534 CCGGTATCGTCGATACAGTTTTAAG 59.602 44.000 34.51 19.25 44.58 1.85
2266 3742 5.967674 CGGTATCGTCGATACAGTTTTAAGT 59.032 40.000 34.51 4.80 44.58 2.24
2267 3743 6.470235 CGGTATCGTCGATACAGTTTTAAGTT 59.530 38.462 34.51 4.40 44.58 2.66
2268 3744 7.008628 CGGTATCGTCGATACAGTTTTAAGTTT 59.991 37.037 34.51 3.80 44.58 2.66
2269 3745 8.650714 GGTATCGTCGATACAGTTTTAAGTTTT 58.349 33.333 34.51 3.45 44.58 2.43
2272 3748 9.630098 ATCGTCGATACAGTTTTAAGTTTTAGA 57.370 29.630 5.79 0.00 0.00 2.10
2273 3749 9.121517 TCGTCGATACAGTTTTAAGTTTTAGAG 57.878 33.333 0.00 0.00 0.00 2.43
2274 3750 8.371053 CGTCGATACAGTTTTAAGTTTTAGAGG 58.629 37.037 0.00 0.00 0.00 3.69
2275 3751 8.167345 GTCGATACAGTTTTAAGTTTTAGAGGC 58.833 37.037 0.00 0.00 0.00 4.70
2276 3752 8.092687 TCGATACAGTTTTAAGTTTTAGAGGCT 58.907 33.333 0.00 0.00 0.00 4.58
2277 3753 8.169268 CGATACAGTTTTAAGTTTTAGAGGCTG 58.831 37.037 0.00 0.00 0.00 4.85
2278 3754 8.919777 ATACAGTTTTAAGTTTTAGAGGCTGT 57.080 30.769 0.00 0.00 37.29 4.40
2279 3755 7.640597 ACAGTTTTAAGTTTTAGAGGCTGTT 57.359 32.000 0.00 0.00 30.50 3.16
2280 3756 8.063200 ACAGTTTTAAGTTTTAGAGGCTGTTT 57.937 30.769 0.00 0.00 30.50 2.83
2281 3757 7.973944 ACAGTTTTAAGTTTTAGAGGCTGTTTG 59.026 33.333 0.00 0.00 30.50 2.93
2282 3758 7.435192 CAGTTTTAAGTTTTAGAGGCTGTTTGG 59.565 37.037 0.00 0.00 0.00 3.28
2283 3759 7.340999 AGTTTTAAGTTTTAGAGGCTGTTTGGA 59.659 33.333 0.00 0.00 0.00 3.53
2284 3760 7.833285 TTTAAGTTTTAGAGGCTGTTTGGAT 57.167 32.000 0.00 0.00 0.00 3.41
2285 3761 5.966742 AAGTTTTAGAGGCTGTTTGGATC 57.033 39.130 0.00 0.00 0.00 3.36
2286 3762 4.003648 AGTTTTAGAGGCTGTTTGGATCG 58.996 43.478 0.00 0.00 0.00 3.69
2287 3763 2.024176 TTAGAGGCTGTTTGGATCGC 57.976 50.000 0.00 0.00 0.00 4.58
2288 3764 0.901827 TAGAGGCTGTTTGGATCGCA 59.098 50.000 0.00 0.00 0.00 5.10
2289 3765 0.392193 AGAGGCTGTTTGGATCGCAG 60.392 55.000 0.00 0.00 0.00 5.18
2291 3767 2.486966 GCTGTTTGGATCGCAGCC 59.513 61.111 14.97 0.00 46.93 4.85
2292 3768 3.056313 GCTGTTTGGATCGCAGCCC 62.056 63.158 14.97 0.00 46.93 5.19
2293 3769 1.377725 CTGTTTGGATCGCAGCCCT 60.378 57.895 0.00 0.00 0.00 5.19
2294 3770 1.372087 CTGTTTGGATCGCAGCCCTC 61.372 60.000 0.00 0.00 0.00 4.30
2295 3771 2.125147 TTTGGATCGCAGCCCTCG 60.125 61.111 0.00 0.00 0.00 4.63
2296 3772 2.954684 TTTGGATCGCAGCCCTCGT 61.955 57.895 0.00 0.00 0.00 4.18
2297 3773 2.852495 TTTGGATCGCAGCCCTCGTC 62.852 60.000 0.00 0.00 0.00 4.20
2438 3914 6.014669 CCTGACCTAGCTAATCTATGAGCTTT 60.015 42.308 7.14 0.00 46.99 3.51
2991 4470 0.250727 CCCACAAGGTCACCGTCATT 60.251 55.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.227674 CCGCCCAACATAGGAGAGC 60.228 63.158 0.00 0.00 0.00 4.09
14 15 0.463833 GGTTCCGCCCAACATAGGAG 60.464 60.000 0.00 0.00 33.89 3.69
15 16 1.202099 TGGTTCCGCCCAACATAGGA 61.202 55.000 0.00 0.00 36.04 2.94
16 17 0.106719 ATGGTTCCGCCCAACATAGG 60.107 55.000 0.00 0.00 38.20 2.57
18 19 2.223803 AAATGGTTCCGCCCAACATA 57.776 45.000 0.00 0.00 38.20 2.29
19 20 2.223803 TAAATGGTTCCGCCCAACAT 57.776 45.000 0.00 0.00 38.20 2.71
20 21 1.889829 CTTAAATGGTTCCGCCCAACA 59.110 47.619 0.00 0.00 38.20 3.33
21 22 1.203758 CCTTAAATGGTTCCGCCCAAC 59.796 52.381 0.00 0.00 38.20 3.77
22 23 1.551452 CCTTAAATGGTTCCGCCCAA 58.449 50.000 0.00 0.00 38.20 4.12
23 24 0.323908 CCCTTAAATGGTTCCGCCCA 60.324 55.000 0.00 0.00 39.27 5.36
24 25 1.040893 CCCCTTAAATGGTTCCGCCC 61.041 60.000 0.00 0.00 36.04 6.13
28 29 1.672854 GGCGCCCCTTAAATGGTTCC 61.673 60.000 18.11 0.00 0.00 3.62
29 30 1.813859 GGCGCCCCTTAAATGGTTC 59.186 57.895 18.11 0.00 0.00 3.62
30 31 2.049767 CGGCGCCCCTTAAATGGTT 61.050 57.895 23.46 0.00 0.00 3.67
62 64 3.324846 ACTTGTCCTAGCATGACAGAACA 59.675 43.478 0.00 0.00 43.14 3.18
77 79 7.226720 CCTTTATACACCACATATCACTTGTCC 59.773 40.741 0.00 0.00 0.00 4.02
107 109 6.488683 CCCATGAACTGTAAACCTCTAAAACA 59.511 38.462 0.00 0.00 0.00 2.83
112 114 5.570844 GCTTCCCATGAACTGTAAACCTCTA 60.571 44.000 0.00 0.00 0.00 2.43
115 117 3.181434 TGCTTCCCATGAACTGTAAACCT 60.181 43.478 0.00 0.00 0.00 3.50
121 123 1.271597 GGTCTGCTTCCCATGAACTGT 60.272 52.381 0.00 0.00 0.00 3.55
122 124 1.271543 TGGTCTGCTTCCCATGAACTG 60.272 52.381 0.00 0.00 0.00 3.16
123 125 1.067295 TGGTCTGCTTCCCATGAACT 58.933 50.000 0.00 0.00 0.00 3.01
124 126 1.168714 GTGGTCTGCTTCCCATGAAC 58.831 55.000 0.00 0.00 32.32 3.18
125 127 0.770499 TGTGGTCTGCTTCCCATGAA 59.230 50.000 0.00 0.00 32.32 2.57
126 128 0.036732 GTGTGGTCTGCTTCCCATGA 59.963 55.000 0.00 0.00 32.32 3.07
127 129 0.962356 GGTGTGGTCTGCTTCCCATG 60.962 60.000 0.00 0.00 32.32 3.66
128 130 1.136329 AGGTGTGGTCTGCTTCCCAT 61.136 55.000 0.00 0.00 32.32 4.00
129 131 1.352622 AAGGTGTGGTCTGCTTCCCA 61.353 55.000 0.00 0.00 0.00 4.37
130 132 0.606673 GAAGGTGTGGTCTGCTTCCC 60.607 60.000 0.00 0.00 0.00 3.97
131 133 0.108585 TGAAGGTGTGGTCTGCTTCC 59.891 55.000 0.00 0.00 0.00 3.46
132 134 1.967319 TTGAAGGTGTGGTCTGCTTC 58.033 50.000 0.00 0.00 0.00 3.86
156 158 1.003839 CCTGCTGCCTGGTCGTAAA 60.004 57.895 0.00 0.00 0.00 2.01
164 166 3.640257 ATCCACTGCCTGCTGCCTG 62.640 63.158 0.00 0.00 40.16 4.85
170 172 0.447801 CGTAAACATCCACTGCCTGC 59.552 55.000 0.00 0.00 0.00 4.85
179 181 6.730960 TGAAGTAAACATCCGTAAACATCC 57.269 37.500 0.00 0.00 0.00 3.51
180 182 7.803724 ACTTGAAGTAAACATCCGTAAACATC 58.196 34.615 0.00 0.00 0.00 3.06
181 183 7.739498 ACTTGAAGTAAACATCCGTAAACAT 57.261 32.000 0.00 0.00 0.00 2.71
182 184 7.556733 AACTTGAAGTAAACATCCGTAAACA 57.443 32.000 0.00 0.00 0.00 2.83
183 185 7.911727 ACAAACTTGAAGTAAACATCCGTAAAC 59.088 33.333 0.00 0.00 0.00 2.01
184 186 7.911205 CACAAACTTGAAGTAAACATCCGTAAA 59.089 33.333 0.00 0.00 0.00 2.01
185 187 7.411274 CACAAACTTGAAGTAAACATCCGTAA 58.589 34.615 0.00 0.00 0.00 3.18
186 188 6.512091 GCACAAACTTGAAGTAAACATCCGTA 60.512 38.462 0.00 0.00 0.00 4.02
187 189 5.732247 GCACAAACTTGAAGTAAACATCCGT 60.732 40.000 0.00 0.00 0.00 4.69
188 190 4.675114 GCACAAACTTGAAGTAAACATCCG 59.325 41.667 0.00 0.00 0.00 4.18
194 196 4.862018 GCTTGTGCACAAACTTGAAGTAAA 59.138 37.500 30.62 6.30 39.41 2.01
217 219 4.563976 GCCTACTTTAACATTGCTTGCATG 59.436 41.667 0.00 0.00 0.00 4.06
224 226 3.193479 AGCCTTGCCTACTTTAACATTGC 59.807 43.478 0.00 0.00 0.00 3.56
232 234 0.621082 GGAGGAGCCTTGCCTACTTT 59.379 55.000 0.00 0.00 35.44 2.66
250 252 5.123820 TGTTGAAGTTCTTCTCAAACACTGG 59.876 40.000 12.74 0.00 31.17 4.00
251 253 6.182039 TGTTGAAGTTCTTCTCAAACACTG 57.818 37.500 12.74 0.00 31.17 3.66
253 255 6.785191 TGATGTTGAAGTTCTTCTCAAACAC 58.215 36.000 14.54 10.99 35.62 3.32
260 262 4.932200 GGACGATGATGTTGAAGTTCTTCT 59.068 41.667 12.74 0.00 0.00 2.85
272 277 4.943093 TCACAATGAATTGGACGATGATGT 59.057 37.500 7.87 0.00 41.96 3.06
285 290 6.801539 AACGACACTACAATCACAATGAAT 57.198 33.333 0.00 0.00 0.00 2.57
291 296 6.483974 ACCAATAAAACGACACTACAATCACA 59.516 34.615 0.00 0.00 0.00 3.58
301 306 4.915085 CCAATCACACCAATAAAACGACAC 59.085 41.667 0.00 0.00 0.00 3.67
322 327 2.093890 ACGGTACATACGATCACACCA 58.906 47.619 0.00 0.00 34.93 4.17
334 339 5.593679 AGCTTATCAACTACACGGTACAT 57.406 39.130 0.00 0.00 0.00 2.29
336 341 4.032558 GCAAGCTTATCAACTACACGGTAC 59.967 45.833 0.00 0.00 0.00 3.34
339 344 2.351726 GGCAAGCTTATCAACTACACGG 59.648 50.000 0.00 0.00 0.00 4.94
340 345 3.000041 TGGCAAGCTTATCAACTACACG 59.000 45.455 0.00 0.00 0.00 4.49
365 370 4.880164 TGCTTACCTTGTATCCTACTCCT 58.120 43.478 0.00 0.00 0.00 3.69
369 374 4.404715 TGGTCTGCTTACCTTGTATCCTAC 59.595 45.833 9.11 0.00 40.44 3.18
370 375 4.616553 TGGTCTGCTTACCTTGTATCCTA 58.383 43.478 9.11 0.00 40.44 2.94
372 377 3.906720 TGGTCTGCTTACCTTGTATCC 57.093 47.619 9.11 0.00 40.44 2.59
397 402 3.736213 CGATGTTCGGTTGCATATATGC 58.264 45.455 27.45 27.45 44.27 3.14
401 406 2.607635 GACACGATGTTCGGTTGCATAT 59.392 45.455 1.69 0.00 45.59 1.78
406 411 0.856641 AACGACACGATGTTCGGTTG 59.143 50.000 1.69 3.71 45.59 3.77
411 416 3.181543 GCTCTTACAACGACACGATGTTC 60.182 47.826 11.59 0.00 39.66 3.18
416 421 0.038892 GGGCTCTTACAACGACACGA 60.039 55.000 0.00 0.00 0.00 4.35
417 422 0.319211 TGGGCTCTTACAACGACACG 60.319 55.000 0.00 0.00 0.00 4.49
435 440 0.106335 TTGGTTGCCTGCATTGGTTG 59.894 50.000 0.00 0.00 0.00 3.77
437 442 0.106521 GTTTGGTTGCCTGCATTGGT 59.893 50.000 0.00 0.00 0.00 3.67
460 465 0.250597 ACAACACCGTTTCTAGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
465 470 4.932799 CCATACATCACAACACCGTTTCTA 59.067 41.667 0.00 0.00 0.00 2.10
476 481 8.490311 TCTACATACCATTTCCATACATCACAA 58.510 33.333 0.00 0.00 0.00 3.33
478 483 7.931407 TGTCTACATACCATTTCCATACATCAC 59.069 37.037 0.00 0.00 0.00 3.06
482 487 7.051623 GGTTGTCTACATACCATTTCCATACA 58.948 38.462 8.61 0.00 31.69 2.29
484 489 7.201702 TGGTTGTCTACATACCATTTCCATA 57.798 36.000 10.94 0.00 34.49 2.74
486 491 5.506730 TGGTTGTCTACATACCATTTCCA 57.493 39.130 10.94 0.00 34.49 3.53
491 496 6.065374 TGTTGTTTGGTTGTCTACATACCAT 58.935 36.000 13.98 0.00 37.11 3.55
492 497 5.437946 TGTTGTTTGGTTGTCTACATACCA 58.562 37.500 10.94 10.94 36.21 3.25
497 502 3.696548 TGCATGTTGTTTGGTTGTCTACA 59.303 39.130 0.00 0.00 0.00 2.74
499 504 4.991153 TTGCATGTTGTTTGGTTGTCTA 57.009 36.364 0.00 0.00 0.00 2.59
501 506 4.332268 ACATTTGCATGTTGTTTGGTTGTC 59.668 37.500 0.00 0.00 41.16 3.18
511 516 4.034163 TGCAGAAAACACATTTGCATGTTG 59.966 37.500 4.26 0.00 41.16 3.33
513 518 3.794717 TGCAGAAAACACATTTGCATGT 58.205 36.364 0.00 0.00 45.18 3.21
515 520 7.675962 AATAATGCAGAAAACACATTTGCAT 57.324 28.000 4.57 4.57 40.44 3.96
533 538 5.913137 TGGGTCTGGTTAAGCAAATAATG 57.087 39.130 8.94 0.00 0.00 1.90
534 539 5.957774 ACATGGGTCTGGTTAAGCAAATAAT 59.042 36.000 8.94 0.00 0.00 1.28
546 552 2.765689 TTTTTCCACATGGGTCTGGT 57.234 45.000 0.00 0.00 38.11 4.00
565 571 2.821969 AGCATCGTCTTGCCATCTTTTT 59.178 40.909 4.56 0.00 43.83 1.94
566 572 2.163010 CAGCATCGTCTTGCCATCTTTT 59.837 45.455 4.56 0.00 43.83 2.27
571 577 2.117156 GCCAGCATCGTCTTGCCAT 61.117 57.895 4.56 0.00 43.83 4.40
572 578 2.747460 GCCAGCATCGTCTTGCCA 60.747 61.111 4.56 0.00 43.83 4.92
597 603 3.242936 GCAACTTGCTTCTTTGGACGTAA 60.243 43.478 6.50 0.00 40.96 3.18
598 604 2.289547 GCAACTTGCTTCTTTGGACGTA 59.710 45.455 6.50 0.00 40.96 3.57
599 605 1.065551 GCAACTTGCTTCTTTGGACGT 59.934 47.619 6.50 0.00 40.96 4.34
600 606 1.758783 GCAACTTGCTTCTTTGGACG 58.241 50.000 6.50 0.00 40.96 4.79
617 623 3.297134 AGGAAACTGAAACCTCAAGCA 57.703 42.857 0.00 0.00 41.13 3.91
635 641 2.050350 CATTGCACCCTCTGCCAGG 61.050 63.158 0.00 0.00 46.51 4.45
636 642 0.896940 AACATTGCACCCTCTGCCAG 60.897 55.000 0.00 0.00 46.51 4.85
637 643 1.153524 AACATTGCACCCTCTGCCA 59.846 52.632 0.00 0.00 46.51 4.92
638 644 1.181098 ACAACATTGCACCCTCTGCC 61.181 55.000 0.00 0.00 46.51 4.85
640 646 0.038892 GCACAACATTGCACCCTCTG 60.039 55.000 0.00 0.00 42.49 3.35
641 647 1.181098 GGCACAACATTGCACCCTCT 61.181 55.000 0.00 0.00 44.94 3.69
646 652 0.038343 ATTCGGGCACAACATTGCAC 60.038 50.000 0.00 0.00 44.94 4.57
652 658 1.522668 CAAGAGATTCGGGCACAACA 58.477 50.000 0.00 0.00 0.00 3.33
698 704 1.507141 AAGCCGCGTGGAAGAACTTG 61.507 55.000 21.76 0.00 37.49 3.16
737 755 1.300233 GATAGCTCGACCGGGCAAG 60.300 63.158 17.00 0.00 45.68 4.01
748 766 1.394227 CTCCGGACGATACGATAGCTC 59.606 57.143 0.00 0.00 42.67 4.09
749 767 1.440708 CTCCGGACGATACGATAGCT 58.559 55.000 0.00 0.00 42.67 3.32
750 768 0.179194 GCTCCGGACGATACGATAGC 60.179 60.000 0.00 0.00 42.67 2.97
751 769 1.394227 GAGCTCCGGACGATACGATAG 59.606 57.143 0.00 0.00 46.19 2.08
752 770 1.436600 GAGCTCCGGACGATACGATA 58.563 55.000 0.00 0.00 0.00 2.92
753 771 1.235948 GGAGCTCCGGACGATACGAT 61.236 60.000 19.06 0.00 0.00 3.73
754 772 1.890979 GGAGCTCCGGACGATACGA 60.891 63.158 19.06 0.00 0.00 3.43
755 773 2.638154 GGAGCTCCGGACGATACG 59.362 66.667 19.06 0.00 0.00 3.06
765 783 1.442148 GTATGGGTGACGGAGCTCC 59.558 63.158 23.79 23.79 0.00 4.70
766 784 1.065928 CGTATGGGTGACGGAGCTC 59.934 63.158 4.71 4.71 36.66 4.09
767 785 3.077519 GCGTATGGGTGACGGAGCT 62.078 63.158 0.00 0.00 40.66 4.09
768 786 2.585247 GCGTATGGGTGACGGAGC 60.585 66.667 0.00 0.00 40.66 4.70
769 787 2.278596 CGCGTATGGGTGACGGAG 60.279 66.667 0.00 0.00 40.66 4.63
770 788 3.829044 CCGCGTATGGGTGACGGA 61.829 66.667 4.92 0.00 46.71 4.69
776 794 3.969250 CTTGGCACCGCGTATGGGT 62.969 63.158 4.92 0.00 38.65 4.51
777 795 3.202001 CTTGGCACCGCGTATGGG 61.202 66.667 4.92 0.00 0.00 4.00
850 869 7.094805 TGGATTCTTTCACGAAATAAGACTTGG 60.095 37.037 0.00 0.00 0.00 3.61
852 871 7.094762 GGTGGATTCTTTCACGAAATAAGACTT 60.095 37.037 0.00 0.00 34.93 3.01
1023 1051 1.938657 TTGTTGTGGTTGTGGCGTGG 61.939 55.000 0.00 0.00 0.00 4.94
1024 1052 0.102120 ATTGTTGTGGTTGTGGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
1033 1061 1.659794 GAAGCGCCATTGTTGTGGT 59.340 52.632 2.29 0.00 41.47 4.16
1411 1440 4.899239 GTCGCTCCAGATGCCGGG 62.899 72.222 2.18 0.00 0.00 5.73
1468 1497 1.005394 GGAAGCCGTCCTCGTTTGA 60.005 57.895 0.00 0.00 43.98 2.69
1730 3122 4.814294 GTAGGCACCGGACGCAGG 62.814 72.222 9.46 0.00 0.00 4.85
1746 3138 2.031163 GCCTGCACCGAGTTCTGT 59.969 61.111 0.00 0.00 0.00 3.41
1897 3289 5.618640 GCCTATTTTTGTCTGTGAGAGCTTG 60.619 44.000 0.00 0.00 0.00 4.01
1898 3290 4.457257 GCCTATTTTTGTCTGTGAGAGCTT 59.543 41.667 0.00 0.00 0.00 3.74
1900 3292 4.006319 AGCCTATTTTTGTCTGTGAGAGC 58.994 43.478 0.00 0.00 0.00 4.09
1908 3331 7.765695 TGAAGATTGAAGCCTATTTTTGTCT 57.234 32.000 0.00 0.00 0.00 3.41
1923 3346 4.703645 AGAAGACGACGATGAAGATTGA 57.296 40.909 0.00 0.00 0.00 2.57
1926 3349 4.082190 TGGAAAGAAGACGACGATGAAGAT 60.082 41.667 0.00 0.00 0.00 2.40
1927 3350 3.254903 TGGAAAGAAGACGACGATGAAGA 59.745 43.478 0.00 0.00 0.00 2.87
1928 3351 3.575630 TGGAAAGAAGACGACGATGAAG 58.424 45.455 0.00 0.00 0.00 3.02
1931 3354 4.725556 TTTTGGAAAGAAGACGACGATG 57.274 40.909 0.00 0.00 0.00 3.84
1932 3355 5.941948 AATTTTGGAAAGAAGACGACGAT 57.058 34.783 0.00 0.00 0.00 3.73
1933 3356 5.526111 AGAAATTTTGGAAAGAAGACGACGA 59.474 36.000 0.00 0.00 0.00 4.20
1934 3357 5.748592 AGAAATTTTGGAAAGAAGACGACG 58.251 37.500 0.00 0.00 0.00 5.12
1935 3358 6.725246 TGAGAAATTTTGGAAAGAAGACGAC 58.275 36.000 0.00 0.00 0.00 4.34
1936 3359 6.513393 GCTGAGAAATTTTGGAAAGAAGACGA 60.513 38.462 0.00 0.00 0.00 4.20
1937 3360 5.626955 GCTGAGAAATTTTGGAAAGAAGACG 59.373 40.000 0.00 0.00 0.00 4.18
1938 3361 5.626955 CGCTGAGAAATTTTGGAAAGAAGAC 59.373 40.000 0.00 0.00 0.00 3.01
1939 3362 5.530915 TCGCTGAGAAATTTTGGAAAGAAGA 59.469 36.000 0.00 0.00 0.00 2.87
1940 3363 5.762045 TCGCTGAGAAATTTTGGAAAGAAG 58.238 37.500 0.00 0.00 0.00 2.85
1941 3364 5.530915 TCTCGCTGAGAAATTTTGGAAAGAA 59.469 36.000 5.90 0.00 35.59 2.52
1942 3365 5.063204 TCTCGCTGAGAAATTTTGGAAAGA 58.937 37.500 5.90 0.00 35.59 2.52
1943 3366 5.049129 ACTCTCGCTGAGAAATTTTGGAAAG 60.049 40.000 11.29 0.00 45.39 2.62
1944 3367 4.821805 ACTCTCGCTGAGAAATTTTGGAAA 59.178 37.500 11.29 0.00 45.39 3.13
1953 3376 6.598457 AGTTATACTGTACTCTCGCTGAGAAA 59.402 38.462 11.29 0.04 45.39 2.52
1954 3377 6.114089 AGTTATACTGTACTCTCGCTGAGAA 58.886 40.000 11.29 0.00 45.39 2.87
1973 3396 8.733458 GGAAAACAAAACCCGAGTATTAGTTAT 58.267 33.333 0.00 0.00 0.00 1.89
1974 3397 7.938490 AGGAAAACAAAACCCGAGTATTAGTTA 59.062 33.333 0.00 0.00 0.00 2.24
1983 3406 3.881089 ACTGTAGGAAAACAAAACCCGAG 59.119 43.478 0.00 0.00 0.00 4.63
1986 3409 5.924254 GCATAACTGTAGGAAAACAAAACCC 59.076 40.000 0.00 0.00 0.00 4.11
2000 3424 2.835156 TGCCACCAGTAGCATAACTGTA 59.165 45.455 11.46 0.00 44.45 2.74
2009 3433 1.982073 GCACGAATGCCACCAGTAGC 61.982 60.000 0.00 0.00 46.97 3.58
2010 3434 2.089854 GCACGAATGCCACCAGTAG 58.910 57.895 0.00 0.00 46.97 2.57
2011 3435 4.294523 GCACGAATGCCACCAGTA 57.705 55.556 0.00 0.00 46.97 2.74
2020 3444 8.757164 TCCTGTAAATATACATAGCACGAATG 57.243 34.615 0.00 0.00 41.09 2.67
2022 3446 7.375834 CCTCCTGTAAATATACATAGCACGAA 58.624 38.462 0.00 0.00 41.09 3.85
2036 3460 1.382522 CACATGCGCCTCCTGTAAAT 58.617 50.000 4.18 0.00 0.00 1.40
2039 3463 2.584064 CCACATGCGCCTCCTGTA 59.416 61.111 4.18 0.00 0.00 2.74
2040 3464 4.415150 CCCACATGCGCCTCCTGT 62.415 66.667 4.18 0.00 0.00 4.00
2061 3485 2.615391 TCATCAGGGTACAGGACACAA 58.385 47.619 0.00 0.00 31.73 3.33
2067 3491 3.515502 TCTCAACTTCATCAGGGTACAGG 59.484 47.826 0.00 0.00 0.00 4.00
2070 3494 5.794894 TCTTTCTCAACTTCATCAGGGTAC 58.205 41.667 0.00 0.00 0.00 3.34
2085 3509 7.040755 TGCAACGAATTTTATCCTTCTTTCTCA 60.041 33.333 0.00 0.00 0.00 3.27
2109 3581 4.511617 TCCTGATCTCTGATATCGTTGC 57.488 45.455 0.00 0.00 0.00 4.17
2114 3587 4.511617 TGCGTTCCTGATCTCTGATATC 57.488 45.455 0.00 0.00 0.00 1.63
2115 3588 4.944619 TTGCGTTCCTGATCTCTGATAT 57.055 40.909 0.00 0.00 0.00 1.63
2116 3589 4.944619 ATTGCGTTCCTGATCTCTGATA 57.055 40.909 0.00 0.00 0.00 2.15
2129 3602 6.383415 TGGAACATAAGGTTTTATTGCGTTC 58.617 36.000 0.00 0.00 40.63 3.95
2177 3653 6.708949 GGAAGCGTTTCCCATTAAGATATACA 59.291 38.462 19.49 0.00 46.03 2.29
2178 3654 7.130303 GGAAGCGTTTCCCATTAAGATATAC 57.870 40.000 19.49 0.00 46.03 1.47
2192 3668 3.191791 AGACTACTGAGAGGAAGCGTTTC 59.808 47.826 3.02 3.02 0.00 2.78
2193 3669 3.057174 CAGACTACTGAGAGGAAGCGTTT 60.057 47.826 0.00 0.00 46.03 3.60
2194 3670 2.490115 CAGACTACTGAGAGGAAGCGTT 59.510 50.000 0.00 0.00 46.03 4.84
2195 3671 2.088423 CAGACTACTGAGAGGAAGCGT 58.912 52.381 0.00 0.00 46.03 5.07
2196 3672 2.360844 TCAGACTACTGAGAGGAAGCG 58.639 52.381 0.00 0.00 46.55 4.68
2203 3679 8.194104 GAAAGCTTTCATATCAGACTACTGAGA 58.806 37.037 29.93 0.00 46.15 3.27
2204 3680 7.437862 GGAAAGCTTTCATATCAGACTACTGAG 59.562 40.741 33.88 0.00 45.39 3.35
2205 3681 7.124901 AGGAAAGCTTTCATATCAGACTACTGA 59.875 37.037 33.88 0.00 45.77 3.41
2206 3682 7.271511 AGGAAAGCTTTCATATCAGACTACTG 58.728 38.462 33.88 0.00 40.71 2.74
2207 3683 7.124901 TGAGGAAAGCTTTCATATCAGACTACT 59.875 37.037 33.88 19.79 38.92 2.57
2208 3684 7.268586 TGAGGAAAGCTTTCATATCAGACTAC 58.731 38.462 33.88 16.32 38.92 2.73
2209 3685 7.423844 TGAGGAAAGCTTTCATATCAGACTA 57.576 36.000 33.88 13.69 38.92 2.59
2210 3686 6.305272 TGAGGAAAGCTTTCATATCAGACT 57.695 37.500 33.88 21.48 38.92 3.24
2211 3687 7.172361 GGTATGAGGAAAGCTTTCATATCAGAC 59.828 40.741 32.08 32.08 37.28 3.51
2212 3688 7.147497 TGGTATGAGGAAAGCTTTCATATCAGA 60.147 37.037 33.88 27.01 39.02 3.27
2213 3689 6.994496 TGGTATGAGGAAAGCTTTCATATCAG 59.006 38.462 33.88 0.00 39.02 2.90
2214 3690 6.767902 GTGGTATGAGGAAAGCTTTCATATCA 59.232 38.462 33.88 30.70 40.66 2.15
2215 3691 6.995091 AGTGGTATGAGGAAAGCTTTCATATC 59.005 38.462 33.88 27.24 38.92 1.63
2216 3692 6.904626 AGTGGTATGAGGAAAGCTTTCATAT 58.095 36.000 33.88 25.71 38.92 1.78
2217 3693 6.313519 AGTGGTATGAGGAAAGCTTTCATA 57.686 37.500 33.88 23.28 38.92 2.15
2218 3694 5.184892 AGTGGTATGAGGAAAGCTTTCAT 57.815 39.130 33.88 29.96 38.92 2.57
2219 3695 4.565652 GGAGTGGTATGAGGAAAGCTTTCA 60.566 45.833 33.88 19.62 38.92 2.69
2220 3696 3.942115 GGAGTGGTATGAGGAAAGCTTTC 59.058 47.826 27.68 27.68 36.46 2.62
2221 3697 3.619979 CGGAGTGGTATGAGGAAAGCTTT 60.620 47.826 12.53 12.53 0.00 3.51
2222 3698 2.093447 CGGAGTGGTATGAGGAAAGCTT 60.093 50.000 0.00 0.00 0.00 3.74
2223 3699 1.482593 CGGAGTGGTATGAGGAAAGCT 59.517 52.381 0.00 0.00 0.00 3.74
2224 3700 1.473434 CCGGAGTGGTATGAGGAAAGC 60.473 57.143 0.00 0.00 0.00 3.51
2225 3701 2.604046 CCGGAGTGGTATGAGGAAAG 57.396 55.000 0.00 0.00 0.00 2.62
2236 3712 1.196354 GTATCGACGATACCGGAGTGG 59.804 57.143 29.51 4.09 38.99 4.00
2237 3713 1.869132 TGTATCGACGATACCGGAGTG 59.131 52.381 33.78 0.00 42.81 3.51
2238 3714 2.141517 CTGTATCGACGATACCGGAGT 58.858 52.381 33.78 7.01 42.81 3.85
2239 3715 2.141517 ACTGTATCGACGATACCGGAG 58.858 52.381 33.78 27.82 42.81 4.63
2240 3716 2.245159 ACTGTATCGACGATACCGGA 57.755 50.000 33.78 20.57 42.81 5.14
2241 3717 3.344904 AAACTGTATCGACGATACCGG 57.655 47.619 33.78 28.41 42.81 5.28
2242 3718 5.967674 ACTTAAAACTGTATCGACGATACCG 59.032 40.000 33.78 30.60 42.81 4.02
2243 3719 7.746526 AACTTAAAACTGTATCGACGATACC 57.253 36.000 33.78 21.31 42.81 2.73
2246 3722 9.630098 TCTAAAACTTAAAACTGTATCGACGAT 57.370 29.630 15.74 15.74 0.00 3.73
2247 3723 9.121517 CTCTAAAACTTAAAACTGTATCGACGA 57.878 33.333 0.00 0.00 0.00 4.20
2248 3724 8.371053 CCTCTAAAACTTAAAACTGTATCGACG 58.629 37.037 0.00 0.00 0.00 5.12
2249 3725 8.167345 GCCTCTAAAACTTAAAACTGTATCGAC 58.833 37.037 0.00 0.00 0.00 4.20
2250 3726 8.092687 AGCCTCTAAAACTTAAAACTGTATCGA 58.907 33.333 0.00 0.00 0.00 3.59
2251 3727 8.169268 CAGCCTCTAAAACTTAAAACTGTATCG 58.831 37.037 0.00 0.00 0.00 2.92
2252 3728 9.000486 ACAGCCTCTAAAACTTAAAACTGTATC 58.000 33.333 0.00 0.00 33.20 2.24
2253 3729 8.919777 ACAGCCTCTAAAACTTAAAACTGTAT 57.080 30.769 0.00 0.00 33.20 2.29
2254 3730 8.741603 AACAGCCTCTAAAACTTAAAACTGTA 57.258 30.769 0.00 0.00 33.79 2.74
2255 3731 7.640597 AACAGCCTCTAAAACTTAAAACTGT 57.359 32.000 0.00 0.00 36.27 3.55
2256 3732 7.435192 CCAAACAGCCTCTAAAACTTAAAACTG 59.565 37.037 0.00 0.00 0.00 3.16
2257 3733 7.340999 TCCAAACAGCCTCTAAAACTTAAAACT 59.659 33.333 0.00 0.00 0.00 2.66
2258 3734 7.485810 TCCAAACAGCCTCTAAAACTTAAAAC 58.514 34.615 0.00 0.00 0.00 2.43
2259 3735 7.648039 TCCAAACAGCCTCTAAAACTTAAAA 57.352 32.000 0.00 0.00 0.00 1.52
2260 3736 7.308348 CGATCCAAACAGCCTCTAAAACTTAAA 60.308 37.037 0.00 0.00 0.00 1.52
2261 3737 6.148811 CGATCCAAACAGCCTCTAAAACTTAA 59.851 38.462 0.00 0.00 0.00 1.85
2262 3738 5.642063 CGATCCAAACAGCCTCTAAAACTTA 59.358 40.000 0.00 0.00 0.00 2.24
2263 3739 4.455877 CGATCCAAACAGCCTCTAAAACTT 59.544 41.667 0.00 0.00 0.00 2.66
2264 3740 4.003648 CGATCCAAACAGCCTCTAAAACT 58.996 43.478 0.00 0.00 0.00 2.66
2265 3741 3.426292 GCGATCCAAACAGCCTCTAAAAC 60.426 47.826 0.00 0.00 0.00 2.43
2266 3742 2.747446 GCGATCCAAACAGCCTCTAAAA 59.253 45.455 0.00 0.00 0.00 1.52
2267 3743 2.290008 TGCGATCCAAACAGCCTCTAAA 60.290 45.455 0.00 0.00 0.00 1.85
2268 3744 1.277842 TGCGATCCAAACAGCCTCTAA 59.722 47.619 0.00 0.00 0.00 2.10
2269 3745 0.901827 TGCGATCCAAACAGCCTCTA 59.098 50.000 0.00 0.00 0.00 2.43
2270 3746 0.392193 CTGCGATCCAAACAGCCTCT 60.392 55.000 0.00 0.00 0.00 3.69
2271 3747 2.093216 CTGCGATCCAAACAGCCTC 58.907 57.895 0.00 0.00 0.00 4.70
2272 3748 4.308526 CTGCGATCCAAACAGCCT 57.691 55.556 0.00 0.00 0.00 4.58
2275 3751 1.372087 GAGGGCTGCGATCCAAACAG 61.372 60.000 0.00 0.00 34.48 3.16
2276 3752 1.377202 GAGGGCTGCGATCCAAACA 60.377 57.895 0.00 0.00 0.00 2.83
2277 3753 2.464459 CGAGGGCTGCGATCCAAAC 61.464 63.158 0.00 0.00 0.00 2.93
2278 3754 2.125147 CGAGGGCTGCGATCCAAA 60.125 61.111 0.00 0.00 0.00 3.28
2279 3755 3.371097 GACGAGGGCTGCGATCCAA 62.371 63.158 6.55 0.00 0.00 3.53
2280 3756 3.838271 GACGAGGGCTGCGATCCA 61.838 66.667 6.55 0.00 0.00 3.41
2281 3757 2.579684 AAAGACGAGGGCTGCGATCC 62.580 60.000 6.55 0.00 0.00 3.36
2282 3758 0.741221 AAAAGACGAGGGCTGCGATC 60.741 55.000 6.55 0.00 0.00 3.69
2283 3759 0.321653 AAAAAGACGAGGGCTGCGAT 60.322 50.000 6.55 0.00 0.00 4.58
2284 3760 1.070786 AAAAAGACGAGGGCTGCGA 59.929 52.632 6.55 0.00 0.00 5.10
2285 3761 3.655481 AAAAAGACGAGGGCTGCG 58.345 55.556 0.00 0.00 0.00 5.18
2306 3782 8.691661 TCAATAAAGACCTAGTTTTCTTGCTT 57.308 30.769 0.57 0.00 32.26 3.91
2438 3914 4.397103 TCGAACCTCGAGCTTCAAATACTA 59.603 41.667 18.18 0.00 44.82 1.82
2485 3961 5.429130 GGAGATCCTAGAAACCGTGAAAAT 58.571 41.667 0.00 0.00 0.00 1.82
2488 3964 2.764572 GGGAGATCCTAGAAACCGTGAA 59.235 50.000 0.00 0.00 35.95 3.18
2546 4022 9.995003 ATTGTAAACATGTTGTGAACCATATTT 57.005 25.926 12.82 0.00 0.00 1.40
2753 4232 1.375523 GTGGACGCCGGAGTTTCAT 60.376 57.895 13.57 0.00 0.00 2.57
2991 4470 1.534163 AGTCACGACGAATTCACTCGA 59.466 47.619 22.78 5.13 41.44 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.