Multiple sequence alignment - TraesCS3A01G122800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G122800 chr3A 100.000 2753 0 0 1 2753 98515481 98512729 0.000000e+00 5084
1 TraesCS3A01G122800 chr3A 94.515 1659 79 4 1038 2694 637956757 637958405 0.000000e+00 2549
2 TraesCS3A01G122800 chr3A 92.857 364 12 2 442 805 637946755 637947104 1.460000e-142 516
3 TraesCS3A01G122800 chr3A 93.694 111 7 0 933 1043 637947105 637947215 1.700000e-37 167
4 TraesCS3A01G122800 chr2A 94.209 2314 109 5 444 2753 133644706 133642414 0.000000e+00 3507
5 TraesCS3A01G122800 chr2A 96.825 441 12 1 3 441 83852392 83852832 0.000000e+00 736
6 TraesCS3A01G122800 chr2A 96.396 444 14 1 1 442 745588620 745589063 0.000000e+00 730
7 TraesCS3A01G122800 chr2A 89.865 444 45 0 1734 2177 744806116 744805673 3.080000e-159 571
8 TraesCS3A01G122800 chr2A 79.429 666 120 10 1440 2092 754456555 754455894 3.230000e-124 455
9 TraesCS3A01G122800 chr7B 92.749 1848 130 3 884 2728 415325341 415327187 0.000000e+00 2667
10 TraesCS3A01G122800 chr5D 91.131 1883 151 7 884 2753 154610328 154612207 0.000000e+00 2538
11 TraesCS3A01G122800 chr5D 89.231 260 19 3 629 887 154609931 154610182 1.590000e-82 316
12 TraesCS3A01G122800 chr1A 94.222 1298 73 1 1458 2753 177472278 177473575 0.000000e+00 1980
13 TraesCS3A01G122800 chr1A 92.180 1023 55 4 442 1463 177464882 177465880 0.000000e+00 1423
14 TraesCS3A01G122800 chrUn 88.448 831 93 3 884 1713 136438812 136437984 0.000000e+00 1000
15 TraesCS3A01G122800 chrUn 97.345 452 10 1 1 450 78797261 78796810 0.000000e+00 767
16 TraesCS3A01G122800 chr3B 96.732 459 11 3 1 456 24692756 24692299 0.000000e+00 761
17 TraesCS3A01G122800 chr4A 97.523 444 8 2 1 441 702170316 702169873 0.000000e+00 756
18 TraesCS3A01G122800 chr5B 97.506 441 9 1 1 439 643129908 643129468 0.000000e+00 752
19 TraesCS3A01G122800 chr4B 97.059 442 11 1 1 440 637367422 637367863 0.000000e+00 743
20 TraesCS3A01G122800 chr4B 96.847 444 12 1 1 442 285605847 285605404 0.000000e+00 741
21 TraesCS3A01G122800 chr1B 97.059 442 11 1 1 440 431452552 431452111 0.000000e+00 743
22 TraesCS3A01G122800 chr7A 78.915 645 114 11 1440 2072 259560240 259559606 4.240000e-113 418
23 TraesCS3A01G122800 chr6A 88.462 312 36 0 1728 2039 121670765 121671076 7.200000e-101 377
24 TraesCS3A01G122800 chr5A 77.347 671 128 15 1440 2092 635470306 635469642 2.590000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G122800 chr3A 98512729 98515481 2752 True 5084 5084 100.000 1 2753 1 chr3A.!!$R1 2752
1 TraesCS3A01G122800 chr3A 637956757 637958405 1648 False 2549 2549 94.515 1038 2694 1 chr3A.!!$F1 1656
2 TraesCS3A01G122800 chr2A 133642414 133644706 2292 True 3507 3507 94.209 444 2753 1 chr2A.!!$R1 2309
3 TraesCS3A01G122800 chr2A 754455894 754456555 661 True 455 455 79.429 1440 2092 1 chr2A.!!$R3 652
4 TraesCS3A01G122800 chr7B 415325341 415327187 1846 False 2667 2667 92.749 884 2728 1 chr7B.!!$F1 1844
5 TraesCS3A01G122800 chr5D 154609931 154612207 2276 False 1427 2538 90.181 629 2753 2 chr5D.!!$F1 2124
6 TraesCS3A01G122800 chr1A 177472278 177473575 1297 False 1980 1980 94.222 1458 2753 1 chr1A.!!$F2 1295
7 TraesCS3A01G122800 chr1A 177464882 177465880 998 False 1423 1423 92.180 442 1463 1 chr1A.!!$F1 1021
8 TraesCS3A01G122800 chrUn 136437984 136438812 828 True 1000 1000 88.448 884 1713 1 chrUn.!!$R2 829
9 TraesCS3A01G122800 chr7A 259559606 259560240 634 True 418 418 78.915 1440 2072 1 chr7A.!!$R1 632
10 TraesCS3A01G122800 chr5A 635469642 635470306 664 True 375 375 77.347 1440 2092 1 chr5A.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.036306 AACCCTACTTCGGCCAACAG 59.964 55.0 2.24 0.0 0.0 3.16 F
321 322 0.036306 CCCTACTTCGGCCAACAGTT 59.964 55.0 2.24 0.0 0.0 3.16 F
369 370 0.400594 GTGGCACAGGGTCCTAGTTT 59.599 55.0 13.86 0.0 41.8 2.66 F
621 622 0.856982 TCCCCATCCCTCTCTCTCTC 59.143 60.0 0.00 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1536 0.179018 GACTGTTCTGGCAACCTGGT 60.179 55.000 0.00 0.0 0.00 4.00 R
1497 1649 0.751643 AAACGGCAGCAAGGTCTTGT 60.752 50.000 11.71 0.0 42.31 3.16 R
1746 1917 1.196354 GCTCAATATGACGCTCATGGC 59.804 52.381 9.77 0.0 37.70 4.40 R
2474 2651 1.140312 AATCCATCCCACCGTGCTAT 58.860 50.000 0.00 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.653888 CCCGCCAACCCCTTCGTT 62.654 66.667 0.00 0.00 0.00 3.85
19 20 3.361977 CCGCCAACCCCTTCGTTG 61.362 66.667 0.00 0.00 42.31 4.10
20 21 2.281208 CGCCAACCCCTTCGTTGA 60.281 61.111 3.10 0.00 44.88 3.18
21 22 1.674322 CGCCAACCCCTTCGTTGAT 60.674 57.895 3.10 0.00 44.88 2.57
22 23 1.883021 GCCAACCCCTTCGTTGATG 59.117 57.895 3.10 0.00 44.88 3.07
23 24 1.883021 CCAACCCCTTCGTTGATGC 59.117 57.895 3.10 0.00 44.88 3.91
24 25 0.893270 CCAACCCCTTCGTTGATGCA 60.893 55.000 3.10 0.00 44.88 3.96
25 26 0.958091 CAACCCCTTCGTTGATGCAA 59.042 50.000 0.00 0.00 44.88 4.08
26 27 0.958822 AACCCCTTCGTTGATGCAAC 59.041 50.000 0.00 0.00 40.54 4.17
27 28 0.893727 ACCCCTTCGTTGATGCAACC 60.894 55.000 0.00 0.00 40.82 3.77
28 29 1.595093 CCCCTTCGTTGATGCAACCC 61.595 60.000 0.00 0.00 40.82 4.11
29 30 0.609131 CCCTTCGTTGATGCAACCCT 60.609 55.000 0.00 0.00 40.82 4.34
30 31 0.804989 CCTTCGTTGATGCAACCCTC 59.195 55.000 0.00 0.00 40.82 4.30
31 32 1.611673 CCTTCGTTGATGCAACCCTCT 60.612 52.381 0.00 0.00 40.82 3.69
32 33 2.154462 CTTCGTTGATGCAACCCTCTT 58.846 47.619 0.00 0.00 40.82 2.85
33 34 1.522668 TCGTTGATGCAACCCTCTTG 58.477 50.000 0.00 0.00 40.82 3.02
34 35 0.109597 CGTTGATGCAACCCTCTTGC 60.110 55.000 0.00 0.00 40.82 4.01
35 36 0.244721 GTTGATGCAACCCTCTTGCC 59.755 55.000 0.00 0.00 44.32 4.52
36 37 0.899717 TTGATGCAACCCTCTTGCCC 60.900 55.000 0.00 0.00 44.32 5.36
37 38 1.000396 GATGCAACCCTCTTGCCCT 60.000 57.895 0.00 0.00 44.32 5.19
38 39 0.613012 GATGCAACCCTCTTGCCCTT 60.613 55.000 0.00 0.00 44.32 3.95
39 40 0.613012 ATGCAACCCTCTTGCCCTTC 60.613 55.000 0.00 0.00 44.32 3.46
40 41 2.335712 GCAACCCTCTTGCCCTTCG 61.336 63.158 0.00 0.00 39.38 3.79
41 42 1.374947 CAACCCTCTTGCCCTTCGA 59.625 57.895 0.00 0.00 0.00 3.71
42 43 0.955919 CAACCCTCTTGCCCTTCGAC 60.956 60.000 0.00 0.00 0.00 4.20
43 44 2.125512 CCCTCTTGCCCTTCGACG 60.126 66.667 0.00 0.00 0.00 5.12
44 45 2.646175 CCCTCTTGCCCTTCGACGA 61.646 63.158 0.00 0.00 0.00 4.20
45 46 1.517832 CCTCTTGCCCTTCGACGAT 59.482 57.895 0.00 0.00 0.00 3.73
46 47 0.807667 CCTCTTGCCCTTCGACGATG 60.808 60.000 0.00 0.17 0.00 3.84
47 48 0.108615 CTCTTGCCCTTCGACGATGT 60.109 55.000 0.00 0.00 0.00 3.06
48 49 0.389817 TCTTGCCCTTCGACGATGTG 60.390 55.000 0.00 0.00 0.00 3.21
49 50 1.361668 CTTGCCCTTCGACGATGTGG 61.362 60.000 0.00 6.18 0.00 4.17
50 51 2.107041 TTGCCCTTCGACGATGTGGT 62.107 55.000 0.00 0.00 0.00 4.16
51 52 1.810030 GCCCTTCGACGATGTGGTC 60.810 63.158 0.00 0.00 0.00 4.02
52 53 1.153628 CCCTTCGACGATGTGGTCC 60.154 63.158 0.00 0.00 33.30 4.46
53 54 1.605058 CCCTTCGACGATGTGGTCCT 61.605 60.000 0.00 0.00 33.30 3.85
54 55 0.246635 CCTTCGACGATGTGGTCCTT 59.753 55.000 0.00 0.00 33.30 3.36
55 56 1.337823 CCTTCGACGATGTGGTCCTTT 60.338 52.381 0.00 0.00 33.30 3.11
56 57 2.413837 CTTCGACGATGTGGTCCTTTT 58.586 47.619 0.00 0.00 33.30 2.27
57 58 1.790755 TCGACGATGTGGTCCTTTTG 58.209 50.000 0.00 0.00 33.30 2.44
58 59 0.165944 CGACGATGTGGTCCTTTTGC 59.834 55.000 0.00 0.00 33.30 3.68
59 60 0.521735 GACGATGTGGTCCTTTTGCC 59.478 55.000 0.00 0.00 0.00 4.52
60 61 0.179004 ACGATGTGGTCCTTTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
61 62 1.176527 CGATGTGGTCCTTTTGCCAT 58.823 50.000 0.00 0.00 37.09 4.40
62 63 1.133025 CGATGTGGTCCTTTTGCCATC 59.867 52.381 0.00 0.00 37.09 3.51
63 64 1.478105 GATGTGGTCCTTTTGCCATCC 59.522 52.381 0.00 0.00 37.09 3.51
64 65 0.893270 TGTGGTCCTTTTGCCATCCG 60.893 55.000 0.00 0.00 37.09 4.18
65 66 0.893727 GTGGTCCTTTTGCCATCCGT 60.894 55.000 0.00 0.00 37.09 4.69
66 67 0.608035 TGGTCCTTTTGCCATCCGTC 60.608 55.000 0.00 0.00 0.00 4.79
67 68 1.644786 GGTCCTTTTGCCATCCGTCG 61.645 60.000 0.00 0.00 0.00 5.12
68 69 0.672401 GTCCTTTTGCCATCCGTCGA 60.672 55.000 0.00 0.00 0.00 4.20
69 70 0.251916 TCCTTTTGCCATCCGTCGAT 59.748 50.000 0.00 0.00 0.00 3.59
70 71 0.378257 CCTTTTGCCATCCGTCGATG 59.622 55.000 0.00 0.00 44.80 3.84
71 72 0.248215 CTTTTGCCATCCGTCGATGC 60.248 55.000 0.00 0.00 44.00 3.91
72 73 0.957888 TTTTGCCATCCGTCGATGCA 60.958 50.000 0.00 0.00 44.00 3.96
73 74 1.368345 TTTGCCATCCGTCGATGCAG 61.368 55.000 0.00 0.00 44.00 4.41
74 75 2.106938 GCCATCCGTCGATGCAGA 59.893 61.111 0.00 0.00 44.00 4.26
75 76 1.521457 GCCATCCGTCGATGCAGAA 60.521 57.895 0.00 0.00 44.00 3.02
76 77 1.766143 GCCATCCGTCGATGCAGAAC 61.766 60.000 0.00 0.00 44.00 3.01
77 78 0.179100 CCATCCGTCGATGCAGAACT 60.179 55.000 0.00 0.00 44.00 3.01
78 79 1.067060 CCATCCGTCGATGCAGAACTA 59.933 52.381 0.00 0.00 44.00 2.24
79 80 2.288457 CCATCCGTCGATGCAGAACTAT 60.288 50.000 0.00 0.00 44.00 2.12
80 81 3.384668 CATCCGTCGATGCAGAACTATT 58.615 45.455 0.00 0.00 39.59 1.73
81 82 2.809446 TCCGTCGATGCAGAACTATTG 58.191 47.619 0.00 0.00 0.00 1.90
82 83 1.258982 CCGTCGATGCAGAACTATTGC 59.741 52.381 0.00 0.00 41.86 3.56
83 84 1.258982 CGTCGATGCAGAACTATTGCC 59.741 52.381 0.00 0.00 40.81 4.52
84 85 1.599542 GTCGATGCAGAACTATTGCCC 59.400 52.381 0.00 0.00 40.81 5.36
85 86 1.486310 TCGATGCAGAACTATTGCCCT 59.514 47.619 0.00 0.00 40.81 5.19
86 87 2.092968 TCGATGCAGAACTATTGCCCTT 60.093 45.455 0.00 0.00 40.81 3.95
87 88 2.289002 CGATGCAGAACTATTGCCCTTC 59.711 50.000 0.00 0.00 40.81 3.46
88 89 1.737838 TGCAGAACTATTGCCCTTCG 58.262 50.000 0.00 0.00 40.81 3.79
89 90 1.277842 TGCAGAACTATTGCCCTTCGA 59.722 47.619 0.00 0.00 40.81 3.71
90 91 1.936547 GCAGAACTATTGCCCTTCGAG 59.063 52.381 0.00 0.00 35.54 4.04
91 92 2.555199 CAGAACTATTGCCCTTCGAGG 58.445 52.381 0.00 0.00 34.30 4.63
92 93 2.168521 CAGAACTATTGCCCTTCGAGGA 59.831 50.000 0.00 0.00 37.67 3.71
93 94 3.041946 AGAACTATTGCCCTTCGAGGAT 58.958 45.455 0.00 0.00 37.67 3.24
94 95 2.918712 ACTATTGCCCTTCGAGGATG 57.081 50.000 0.00 0.00 37.67 3.51
95 96 2.119495 ACTATTGCCCTTCGAGGATGT 58.881 47.619 0.00 0.00 37.67 3.06
96 97 3.305720 ACTATTGCCCTTCGAGGATGTA 58.694 45.455 0.00 0.00 37.67 2.29
97 98 2.918712 ATTGCCCTTCGAGGATGTAG 57.081 50.000 0.00 0.00 37.67 2.74
98 99 1.860641 TTGCCCTTCGAGGATGTAGA 58.139 50.000 0.00 0.00 37.67 2.59
99 100 1.860641 TGCCCTTCGAGGATGTAGAA 58.139 50.000 0.00 0.00 37.67 2.10
100 101 1.757118 TGCCCTTCGAGGATGTAGAAG 59.243 52.381 0.00 0.00 37.67 2.85
101 102 1.757699 GCCCTTCGAGGATGTAGAAGT 59.242 52.381 0.00 0.00 37.67 3.01
102 103 2.223852 GCCCTTCGAGGATGTAGAAGTC 60.224 54.545 0.00 0.00 37.67 3.01
103 104 3.292460 CCCTTCGAGGATGTAGAAGTCT 58.708 50.000 0.00 0.00 37.67 3.24
104 105 3.702045 CCCTTCGAGGATGTAGAAGTCTT 59.298 47.826 0.00 0.00 37.67 3.01
105 106 4.440802 CCCTTCGAGGATGTAGAAGTCTTG 60.441 50.000 0.00 0.00 37.67 3.02
106 107 3.784701 TCGAGGATGTAGAAGTCTTGC 57.215 47.619 0.00 0.00 0.00 4.01
107 108 2.427453 TCGAGGATGTAGAAGTCTTGCC 59.573 50.000 0.00 0.00 0.00 4.52
108 109 2.482142 CGAGGATGTAGAAGTCTTGCCC 60.482 54.545 0.00 0.00 0.00 5.36
109 110 2.501723 GAGGATGTAGAAGTCTTGCCCA 59.498 50.000 0.00 0.00 0.00 5.36
110 111 2.912956 AGGATGTAGAAGTCTTGCCCAA 59.087 45.455 0.00 0.00 0.00 4.12
111 112 3.010420 GGATGTAGAAGTCTTGCCCAAC 58.990 50.000 0.00 0.00 0.00 3.77
112 113 3.559171 GGATGTAGAAGTCTTGCCCAACA 60.559 47.826 0.00 0.00 0.00 3.33
113 114 3.126001 TGTAGAAGTCTTGCCCAACAG 57.874 47.619 0.00 0.00 0.00 3.16
114 115 2.703536 TGTAGAAGTCTTGCCCAACAGA 59.296 45.455 0.00 0.00 0.00 3.41
115 116 3.327757 TGTAGAAGTCTTGCCCAACAGAT 59.672 43.478 0.00 0.00 0.00 2.90
116 117 4.530553 TGTAGAAGTCTTGCCCAACAGATA 59.469 41.667 0.00 0.00 0.00 1.98
117 118 4.640771 AGAAGTCTTGCCCAACAGATAA 57.359 40.909 0.00 0.00 0.00 1.75
118 119 4.327680 AGAAGTCTTGCCCAACAGATAAC 58.672 43.478 0.00 0.00 0.00 1.89
119 120 2.699954 AGTCTTGCCCAACAGATAACG 58.300 47.619 0.00 0.00 0.00 3.18
120 121 1.737793 GTCTTGCCCAACAGATAACGG 59.262 52.381 0.00 0.00 0.00 4.44
121 122 1.626321 TCTTGCCCAACAGATAACGGA 59.374 47.619 0.00 0.00 0.00 4.69
122 123 2.039216 TCTTGCCCAACAGATAACGGAA 59.961 45.455 0.00 0.00 0.00 4.30
123 124 2.570415 TGCCCAACAGATAACGGAAA 57.430 45.000 0.00 0.00 0.00 3.13
124 125 2.432444 TGCCCAACAGATAACGGAAAG 58.568 47.619 0.00 0.00 0.00 2.62
125 126 1.743394 GCCCAACAGATAACGGAAAGG 59.257 52.381 0.00 0.00 0.00 3.11
126 127 2.878526 GCCCAACAGATAACGGAAAGGT 60.879 50.000 0.00 0.00 0.00 3.50
127 128 2.747446 CCCAACAGATAACGGAAAGGTG 59.253 50.000 0.00 0.00 0.00 4.00
128 129 2.747446 CCAACAGATAACGGAAAGGTGG 59.253 50.000 0.00 0.00 0.00 4.61
129 130 2.747446 CAACAGATAACGGAAAGGTGGG 59.253 50.000 0.00 0.00 0.00 4.61
130 131 1.339727 ACAGATAACGGAAAGGTGGGC 60.340 52.381 0.00 0.00 0.00 5.36
131 132 0.255033 AGATAACGGAAAGGTGGGCC 59.745 55.000 0.00 0.00 0.00 5.80
132 133 0.750546 GATAACGGAAAGGTGGGCCC 60.751 60.000 17.59 17.59 34.57 5.80
133 134 1.502527 ATAACGGAAAGGTGGGCCCA 61.503 55.000 24.45 24.45 34.66 5.36
134 135 1.717038 TAACGGAAAGGTGGGCCCAA 61.717 55.000 30.64 8.18 34.66 4.12
135 136 2.676471 CGGAAAGGTGGGCCCAAG 60.676 66.667 30.64 8.24 34.66 3.61
136 137 2.283894 GGAAAGGTGGGCCCAAGG 60.284 66.667 30.64 0.00 34.66 3.61
137 138 2.851045 GAAAGGTGGGCCCAAGGA 59.149 61.111 30.64 0.00 34.66 3.36
138 139 1.155155 GAAAGGTGGGCCCAAGGAA 59.845 57.895 30.64 0.00 34.66 3.36
139 140 1.152333 AAAGGTGGGCCCAAGGAAC 60.152 57.895 30.64 14.31 34.66 3.62
140 141 1.664956 AAAGGTGGGCCCAAGGAACT 61.665 55.000 30.64 16.92 35.76 3.01
153 154 2.180432 AGGAACTTTTCGGCCTACAC 57.820 50.000 0.00 0.00 27.25 2.90
154 155 1.697982 AGGAACTTTTCGGCCTACACT 59.302 47.619 0.00 0.00 27.25 3.55
155 156 2.901839 AGGAACTTTTCGGCCTACACTA 59.098 45.455 0.00 0.00 27.25 2.74
156 157 3.056035 AGGAACTTTTCGGCCTACACTAG 60.056 47.826 0.00 0.00 27.25 2.57
157 158 3.056322 GGAACTTTTCGGCCTACACTAGA 60.056 47.826 0.00 0.00 0.00 2.43
158 159 3.589495 ACTTTTCGGCCTACACTAGAC 57.411 47.619 0.00 0.00 0.00 2.59
159 160 2.233186 ACTTTTCGGCCTACACTAGACC 59.767 50.000 0.00 0.00 0.00 3.85
160 161 1.927487 TTTCGGCCTACACTAGACCA 58.073 50.000 0.00 0.00 0.00 4.02
161 162 1.927487 TTCGGCCTACACTAGACCAA 58.073 50.000 0.00 0.00 0.00 3.67
162 163 1.927487 TCGGCCTACACTAGACCAAA 58.073 50.000 0.00 0.00 0.00 3.28
163 164 2.250031 TCGGCCTACACTAGACCAAAA 58.750 47.619 0.00 0.00 0.00 2.44
164 165 2.633967 TCGGCCTACACTAGACCAAAAA 59.366 45.455 0.00 0.00 0.00 1.94
165 166 3.000727 CGGCCTACACTAGACCAAAAAG 58.999 50.000 0.00 0.00 0.00 2.27
166 167 3.556423 CGGCCTACACTAGACCAAAAAGT 60.556 47.826 0.00 0.00 0.00 2.66
167 168 4.322198 CGGCCTACACTAGACCAAAAAGTA 60.322 45.833 0.00 0.00 0.00 2.24
168 169 4.934001 GGCCTACACTAGACCAAAAAGTAC 59.066 45.833 0.00 0.00 0.00 2.73
169 170 5.279859 GGCCTACACTAGACCAAAAAGTACT 60.280 44.000 0.00 0.00 0.00 2.73
170 171 6.228995 GCCTACACTAGACCAAAAAGTACTT 58.771 40.000 1.12 1.12 0.00 2.24
171 172 6.709397 GCCTACACTAGACCAAAAAGTACTTT 59.291 38.462 15.22 15.22 0.00 2.66
172 173 7.228108 GCCTACACTAGACCAAAAAGTACTTTT 59.772 37.037 24.66 24.66 43.88 2.27
173 174 8.771766 CCTACACTAGACCAAAAAGTACTTTTC 58.228 37.037 28.90 18.70 41.45 2.29
174 175 7.242914 ACACTAGACCAAAAAGTACTTTTCG 57.757 36.000 28.90 23.48 41.45 3.46
175 176 6.259387 ACACTAGACCAAAAAGTACTTTTCGG 59.741 38.462 28.72 28.72 41.45 4.30
176 177 4.563337 AGACCAAAAAGTACTTTTCGGC 57.437 40.909 29.78 24.31 41.45 5.54
177 178 3.317149 AGACCAAAAAGTACTTTTCGGCC 59.683 43.478 29.78 22.61 41.45 6.13
178 179 3.293337 ACCAAAAAGTACTTTTCGGCCT 58.707 40.909 29.78 14.56 41.45 5.19
179 180 4.463070 ACCAAAAAGTACTTTTCGGCCTA 58.537 39.130 29.78 0.00 41.45 3.93
180 181 4.517832 ACCAAAAAGTACTTTTCGGCCTAG 59.482 41.667 29.78 17.25 41.45 3.02
181 182 4.517832 CCAAAAAGTACTTTTCGGCCTAGT 59.482 41.667 28.90 11.89 41.45 2.57
182 183 5.702209 CCAAAAAGTACTTTTCGGCCTAGTA 59.298 40.000 28.90 0.35 41.45 1.82
183 184 6.373495 CCAAAAAGTACTTTTCGGCCTAGTAT 59.627 38.462 28.90 10.60 41.45 2.12
184 185 7.550196 CCAAAAAGTACTTTTCGGCCTAGTATA 59.450 37.037 28.90 0.00 41.45 1.47
185 186 8.601476 CAAAAAGTACTTTTCGGCCTAGTATAG 58.399 37.037 28.90 5.88 41.45 1.31
186 187 7.651027 AAAGTACTTTTCGGCCTAGTATAGA 57.349 36.000 15.22 0.00 42.77 1.98
187 188 6.631971 AGTACTTTTCGGCCTAGTATAGAC 57.368 41.667 0.00 0.00 42.77 2.59
188 189 4.933505 ACTTTTCGGCCTAGTATAGACC 57.066 45.455 0.00 0.00 42.77 3.85
189 190 4.284178 ACTTTTCGGCCTAGTATAGACCA 58.716 43.478 0.00 0.00 41.94 4.02
190 191 4.713321 ACTTTTCGGCCTAGTATAGACCAA 59.287 41.667 0.00 0.00 41.94 3.67
191 192 5.188359 ACTTTTCGGCCTAGTATAGACCAAA 59.812 40.000 0.00 0.00 41.94 3.28
192 193 5.680594 TTTCGGCCTAGTATAGACCAAAA 57.319 39.130 0.00 0.00 41.94 2.44
193 194 5.680594 TTCGGCCTAGTATAGACCAAAAA 57.319 39.130 0.00 0.00 41.94 1.94
194 195 5.272283 TCGGCCTAGTATAGACCAAAAAG 57.728 43.478 0.00 0.00 41.94 2.27
195 196 4.713321 TCGGCCTAGTATAGACCAAAAAGT 59.287 41.667 0.00 0.00 41.94 2.66
196 197 5.893255 TCGGCCTAGTATAGACCAAAAAGTA 59.107 40.000 0.00 0.00 41.94 2.24
197 198 5.981915 CGGCCTAGTATAGACCAAAAAGTAC 59.018 44.000 0.00 0.00 41.94 2.73
198 199 6.183360 CGGCCTAGTATAGACCAAAAAGTACT 60.183 42.308 0.00 0.00 41.94 2.73
199 200 7.563020 GGCCTAGTATAGACCAAAAAGTACTT 58.437 38.462 1.12 1.12 41.41 2.24
200 201 8.045507 GGCCTAGTATAGACCAAAAAGTACTTT 58.954 37.037 15.22 15.22 41.41 2.66
201 202 9.445878 GCCTAGTATAGACCAAAAAGTACTTTT 57.554 33.333 24.66 24.66 42.77 2.27
204 205 8.543862 AGTATAGACCAAAAAGTACTTTTCGG 57.456 34.615 28.72 28.72 41.45 4.30
205 206 4.563337 AGACCAAAAAGTACTTTTCGGC 57.437 40.909 29.78 24.31 41.45 5.54
206 207 3.317149 AGACCAAAAAGTACTTTTCGGCC 59.683 43.478 29.78 22.61 41.45 6.13
207 208 3.293337 ACCAAAAAGTACTTTTCGGCCT 58.707 40.909 29.78 14.56 41.45 5.19
208 209 4.463070 ACCAAAAAGTACTTTTCGGCCTA 58.537 39.130 29.78 0.00 41.45 3.93
209 210 4.276678 ACCAAAAAGTACTTTTCGGCCTAC 59.723 41.667 29.78 0.00 41.45 3.18
210 211 4.276431 CCAAAAAGTACTTTTCGGCCTACA 59.724 41.667 28.90 0.00 41.45 2.74
211 212 5.048294 CCAAAAAGTACTTTTCGGCCTACAT 60.048 40.000 28.90 11.25 41.45 2.29
212 213 6.443792 CAAAAAGTACTTTTCGGCCTACATT 58.556 36.000 28.90 10.60 41.45 2.71
213 214 6.644248 AAAAGTACTTTTCGGCCTACATTT 57.356 33.333 24.66 1.55 38.27 2.32
214 215 5.622770 AAGTACTTTTCGGCCTACATTTG 57.377 39.130 1.12 0.00 0.00 2.32
215 216 4.901868 AGTACTTTTCGGCCTACATTTGA 58.098 39.130 0.00 0.00 0.00 2.69
216 217 4.694037 AGTACTTTTCGGCCTACATTTGAC 59.306 41.667 0.00 0.00 0.00 3.18
217 218 2.817844 ACTTTTCGGCCTACATTTGACC 59.182 45.455 0.00 0.00 0.00 4.02
218 219 2.570415 TTTCGGCCTACATTTGACCA 57.430 45.000 0.00 0.00 0.00 4.02
219 220 2.570415 TTCGGCCTACATTTGACCAA 57.430 45.000 0.00 0.00 0.00 3.67
220 221 2.570415 TCGGCCTACATTTGACCAAA 57.430 45.000 0.00 0.00 34.46 3.28
221 222 2.865079 TCGGCCTACATTTGACCAAAA 58.135 42.857 0.00 0.00 33.56 2.44
222 223 3.223435 TCGGCCTACATTTGACCAAAAA 58.777 40.909 0.00 0.00 33.56 1.94
240 241 3.441500 AAAAACCTTTTGGGCCAAACA 57.558 38.095 30.49 19.50 46.08 2.83
241 242 2.708216 AAACCTTTTGGGCCAAACAG 57.292 45.000 30.49 25.96 46.08 3.16
242 243 0.180171 AACCTTTTGGGCCAAACAGC 59.820 50.000 30.49 0.00 46.08 4.40
243 244 0.980231 ACCTTTTGGGCCAAACAGCA 60.980 50.000 30.49 15.49 46.08 4.41
244 245 0.249996 CCTTTTGGGCCAAACAGCAG 60.250 55.000 30.49 23.24 32.79 4.24
245 246 0.881600 CTTTTGGGCCAAACAGCAGC 60.882 55.000 30.49 0.00 32.79 5.25
246 247 2.322638 TTTTGGGCCAAACAGCAGCC 62.323 55.000 30.49 0.00 46.37 4.85
249 250 3.294493 GGCCAAACAGCAGCCGAA 61.294 61.111 0.00 0.00 36.84 4.30
250 251 2.727544 GCCAAACAGCAGCCGAAA 59.272 55.556 0.00 0.00 0.00 3.46
251 252 1.067250 GCCAAACAGCAGCCGAAAA 59.933 52.632 0.00 0.00 0.00 2.29
252 253 1.215014 GCCAAACAGCAGCCGAAAAC 61.215 55.000 0.00 0.00 0.00 2.43
253 254 0.102120 CCAAACAGCAGCCGAAAACA 59.898 50.000 0.00 0.00 0.00 2.83
254 255 1.480205 CAAACAGCAGCCGAAAACAG 58.520 50.000 0.00 0.00 0.00 3.16
255 256 0.249031 AAACAGCAGCCGAAAACAGC 60.249 50.000 0.00 0.00 0.00 4.40
256 257 2.075426 AACAGCAGCCGAAAACAGCC 62.075 55.000 0.00 0.00 0.00 4.85
257 258 2.203337 AGCAGCCGAAAACAGCCA 60.203 55.556 0.00 0.00 0.00 4.75
258 259 1.604593 AGCAGCCGAAAACAGCCAT 60.605 52.632 0.00 0.00 0.00 4.40
259 260 1.181098 AGCAGCCGAAAACAGCCATT 61.181 50.000 0.00 0.00 0.00 3.16
260 261 0.319813 GCAGCCGAAAACAGCCATTT 60.320 50.000 0.00 0.00 0.00 2.32
261 262 1.701704 CAGCCGAAAACAGCCATTTC 58.298 50.000 0.00 0.00 34.25 2.17
272 273 4.001248 CCATTTCGGCCAGCTCAA 57.999 55.556 2.24 0.00 0.00 3.02
273 274 1.508088 CCATTTCGGCCAGCTCAAC 59.492 57.895 2.24 0.00 0.00 3.18
274 275 1.508088 CATTTCGGCCAGCTCAACC 59.492 57.895 2.24 0.00 0.00 3.77
275 276 1.074775 ATTTCGGCCAGCTCAACCA 59.925 52.632 2.24 0.00 0.00 3.67
276 277 1.244019 ATTTCGGCCAGCTCAACCAC 61.244 55.000 2.24 0.00 0.00 4.16
277 278 2.337879 TTTCGGCCAGCTCAACCACT 62.338 55.000 2.24 0.00 0.00 4.00
278 279 2.281761 CGGCCAGCTCAACCACTT 60.282 61.111 2.24 0.00 0.00 3.16
279 280 1.898574 CGGCCAGCTCAACCACTTT 60.899 57.895 2.24 0.00 0.00 2.66
280 281 1.455383 CGGCCAGCTCAACCACTTTT 61.455 55.000 2.24 0.00 0.00 2.27
281 282 0.315251 GGCCAGCTCAACCACTTTTC 59.685 55.000 0.00 0.00 0.00 2.29
282 283 0.040067 GCCAGCTCAACCACTTTTCG 60.040 55.000 0.00 0.00 0.00 3.46
283 284 0.593128 CCAGCTCAACCACTTTTCGG 59.407 55.000 0.00 0.00 0.00 4.30
284 285 0.040067 CAGCTCAACCACTTTTCGGC 60.040 55.000 0.00 0.00 0.00 5.54
285 286 1.172812 AGCTCAACCACTTTTCGGCC 61.173 55.000 0.00 0.00 0.00 6.13
286 287 1.452145 GCTCAACCACTTTTCGGCCA 61.452 55.000 2.24 0.00 0.00 5.36
287 288 1.247567 CTCAACCACTTTTCGGCCAT 58.752 50.000 2.24 0.00 0.00 4.40
288 289 0.958091 TCAACCACTTTTCGGCCATG 59.042 50.000 2.24 0.00 0.00 3.66
289 290 0.038343 CAACCACTTTTCGGCCATGG 60.038 55.000 7.63 7.63 36.46 3.66
290 291 1.815817 AACCACTTTTCGGCCATGGC 61.816 55.000 29.47 29.47 41.06 4.40
291 292 2.274645 CCACTTTTCGGCCATGGCA 61.275 57.895 36.56 16.33 44.11 4.92
292 293 1.664873 CACTTTTCGGCCATGGCAA 59.335 52.632 36.56 21.51 44.11 4.52
293 294 0.388907 CACTTTTCGGCCATGGCAAG 60.389 55.000 36.56 30.22 44.11 4.01
294 295 1.216178 CTTTTCGGCCATGGCAAGG 59.784 57.895 36.56 24.44 44.11 3.61
305 306 2.600470 GGCAAGGCCGAAAACCCT 60.600 61.111 0.00 0.00 39.62 4.34
306 307 1.303806 GGCAAGGCCGAAAACCCTA 60.304 57.895 0.00 0.00 39.62 3.53
307 308 1.592400 GGCAAGGCCGAAAACCCTAC 61.592 60.000 0.00 0.00 39.62 3.18
308 309 0.608308 GCAAGGCCGAAAACCCTACT 60.608 55.000 0.00 0.00 0.00 2.57
309 310 1.905637 CAAGGCCGAAAACCCTACTT 58.094 50.000 0.00 0.00 0.00 2.24
310 311 1.810755 CAAGGCCGAAAACCCTACTTC 59.189 52.381 0.00 0.00 0.00 3.01
311 312 0.036671 AGGCCGAAAACCCTACTTCG 60.037 55.000 0.00 0.00 43.12 3.79
314 315 2.463592 CGAAAACCCTACTTCGGCC 58.536 57.895 0.00 0.00 40.52 6.13
315 316 0.320946 CGAAAACCCTACTTCGGCCA 60.321 55.000 2.24 0.00 40.52 5.36
316 317 1.878948 CGAAAACCCTACTTCGGCCAA 60.879 52.381 2.24 0.00 40.52 4.52
317 318 1.538512 GAAAACCCTACTTCGGCCAAC 59.461 52.381 2.24 0.00 0.00 3.77
318 319 0.475044 AAACCCTACTTCGGCCAACA 59.525 50.000 2.24 0.00 0.00 3.33
319 320 0.036306 AACCCTACTTCGGCCAACAG 59.964 55.000 2.24 0.00 0.00 3.16
320 321 1.125711 ACCCTACTTCGGCCAACAGT 61.126 55.000 2.24 3.35 0.00 3.55
321 322 0.036306 CCCTACTTCGGCCAACAGTT 59.964 55.000 2.24 0.00 0.00 3.16
322 323 1.156736 CCTACTTCGGCCAACAGTTG 58.843 55.000 2.24 6.28 0.00 3.16
331 332 3.266282 CCAACAGTTGGCCGAAAAC 57.734 52.632 19.68 0.00 45.17 2.43
332 333 0.744281 CCAACAGTTGGCCGAAAACT 59.256 50.000 19.68 0.00 45.17 2.66
333 334 1.950909 CCAACAGTTGGCCGAAAACTA 59.049 47.619 19.68 0.00 45.17 2.24
334 335 2.287368 CCAACAGTTGGCCGAAAACTAC 60.287 50.000 19.68 0.00 45.17 2.73
335 336 1.601166 ACAGTTGGCCGAAAACTACC 58.399 50.000 6.63 0.00 35.70 3.18
336 337 1.142262 ACAGTTGGCCGAAAACTACCT 59.858 47.619 6.63 0.00 35.70 3.08
337 338 2.227194 CAGTTGGCCGAAAACTACCTT 58.773 47.619 6.63 0.00 35.70 3.50
338 339 2.621526 CAGTTGGCCGAAAACTACCTTT 59.378 45.455 6.63 0.00 35.70 3.11
339 340 3.067601 CAGTTGGCCGAAAACTACCTTTT 59.932 43.478 6.63 0.00 35.70 2.27
340 341 3.317149 AGTTGGCCGAAAACTACCTTTTC 59.683 43.478 5.18 0.00 43.09 2.29
346 347 1.198408 GAAAACTACCTTTTCGGCCCG 59.802 52.381 0.00 0.00 38.73 6.13
347 348 1.239296 AAACTACCTTTTCGGCCCGC 61.239 55.000 0.00 0.00 35.61 6.13
348 349 2.046700 CTACCTTTTCGGCCCGCA 60.047 61.111 0.00 0.00 35.61 5.69
349 350 2.358984 TACCTTTTCGGCCCGCAC 60.359 61.111 0.00 0.00 35.61 5.34
352 353 4.383602 CTTTTCGGCCCGCACGTG 62.384 66.667 12.28 12.28 0.00 4.49
366 367 2.579201 CGTGGCACAGGGTCCTAG 59.421 66.667 19.09 0.00 41.80 3.02
367 368 2.283529 CGTGGCACAGGGTCCTAGT 61.284 63.158 19.09 0.00 41.80 2.57
368 369 1.827399 CGTGGCACAGGGTCCTAGTT 61.827 60.000 19.09 0.00 41.80 2.24
369 370 0.400594 GTGGCACAGGGTCCTAGTTT 59.599 55.000 13.86 0.00 41.80 2.66
370 371 1.145571 TGGCACAGGGTCCTAGTTTT 58.854 50.000 0.00 0.00 0.00 2.43
371 372 1.202879 TGGCACAGGGTCCTAGTTTTG 60.203 52.381 0.00 0.00 0.00 2.44
372 373 0.881796 GCACAGGGTCCTAGTTTTGC 59.118 55.000 0.00 0.00 0.00 3.68
373 374 1.817740 GCACAGGGTCCTAGTTTTGCA 60.818 52.381 0.00 0.00 0.00 4.08
374 375 2.795329 CACAGGGTCCTAGTTTTGCAT 58.205 47.619 0.00 0.00 0.00 3.96
375 376 3.157087 CACAGGGTCCTAGTTTTGCATT 58.843 45.455 0.00 0.00 0.00 3.56
376 377 3.573967 CACAGGGTCCTAGTTTTGCATTT 59.426 43.478 0.00 0.00 0.00 2.32
377 378 4.039124 CACAGGGTCCTAGTTTTGCATTTT 59.961 41.667 0.00 0.00 0.00 1.82
378 379 4.653801 ACAGGGTCCTAGTTTTGCATTTTT 59.346 37.500 0.00 0.00 0.00 1.94
402 403 8.725405 TTTTCATTATGTGCTATAGTTTCCGA 57.275 30.769 0.84 0.00 0.00 4.55
403 404 8.725405 TTTCATTATGTGCTATAGTTTCCGAA 57.275 30.769 0.84 0.00 0.00 4.30
404 405 8.725405 TTCATTATGTGCTATAGTTTCCGAAA 57.275 30.769 0.84 0.00 0.00 3.46
405 406 8.902540 TCATTATGTGCTATAGTTTCCGAAAT 57.097 30.769 0.84 0.00 0.00 2.17
406 407 9.337396 TCATTATGTGCTATAGTTTCCGAAATT 57.663 29.630 0.84 0.00 0.00 1.82
407 408 9.385902 CATTATGTGCTATAGTTTCCGAAATTG 57.614 33.333 0.84 0.00 0.00 2.32
408 409 5.229921 TGTGCTATAGTTTCCGAAATTGC 57.770 39.130 0.84 0.00 0.00 3.56
409 410 4.941263 TGTGCTATAGTTTCCGAAATTGCT 59.059 37.500 0.84 0.00 0.00 3.91
410 411 6.110033 TGTGCTATAGTTTCCGAAATTGCTA 58.890 36.000 0.84 0.00 0.00 3.49
411 412 6.036735 TGTGCTATAGTTTCCGAAATTGCTAC 59.963 38.462 0.84 0.00 0.00 3.58
412 413 6.036735 GTGCTATAGTTTCCGAAATTGCTACA 59.963 38.462 0.84 0.00 0.00 2.74
413 414 6.596106 TGCTATAGTTTCCGAAATTGCTACAA 59.404 34.615 0.84 0.00 0.00 2.41
414 415 7.119992 TGCTATAGTTTCCGAAATTGCTACAAA 59.880 33.333 0.84 0.00 0.00 2.83
415 416 7.966204 GCTATAGTTTCCGAAATTGCTACAAAA 59.034 33.333 0.84 0.00 0.00 2.44
418 419 9.783256 ATAGTTTCCGAAATTGCTACAAAATAC 57.217 29.630 0.00 0.00 0.00 1.89
419 420 6.799925 AGTTTCCGAAATTGCTACAAAATACG 59.200 34.615 0.00 0.00 0.00 3.06
420 421 5.866335 TCCGAAATTGCTACAAAATACGT 57.134 34.783 0.00 0.00 0.00 3.57
421 422 5.860641 TCCGAAATTGCTACAAAATACGTC 58.139 37.500 0.00 0.00 0.00 4.34
422 423 5.408909 TCCGAAATTGCTACAAAATACGTCA 59.591 36.000 0.00 0.00 0.00 4.35
423 424 6.092944 TCCGAAATTGCTACAAAATACGTCAT 59.907 34.615 0.00 0.00 0.00 3.06
424 425 7.278203 TCCGAAATTGCTACAAAATACGTCATA 59.722 33.333 0.00 0.00 0.00 2.15
425 426 7.582679 CCGAAATTGCTACAAAATACGTCATAG 59.417 37.037 0.00 0.00 0.00 2.23
426 427 8.114290 CGAAATTGCTACAAAATACGTCATAGT 58.886 33.333 0.00 0.00 0.00 2.12
427 428 9.769093 GAAATTGCTACAAAATACGTCATAGTT 57.231 29.630 0.00 0.00 0.00 2.24
430 431 8.942669 TTGCTACAAAATACGTCATAGTTTTG 57.057 30.769 15.32 15.32 43.53 2.44
431 432 8.312896 TGCTACAAAATACGTCATAGTTTTGA 57.687 30.769 20.07 9.84 41.61 2.69
432 433 8.775527 TGCTACAAAATACGTCATAGTTTTGAA 58.224 29.630 20.07 8.04 41.61 2.69
433 434 9.601971 GCTACAAAATACGTCATAGTTTTGAAA 57.398 29.630 20.07 11.87 41.61 2.69
614 615 1.011293 TGGAGAAATCCCCATCCCTCT 59.989 52.381 0.00 0.00 0.00 3.69
615 616 1.702401 GGAGAAATCCCCATCCCTCTC 59.298 57.143 0.00 0.00 0.00 3.20
616 617 2.698653 GGAGAAATCCCCATCCCTCTCT 60.699 54.545 0.00 0.00 31.89 3.10
617 618 2.637382 GAGAAATCCCCATCCCTCTCTC 59.363 54.545 0.00 0.00 0.00 3.20
618 619 2.252408 AGAAATCCCCATCCCTCTCTCT 59.748 50.000 0.00 0.00 0.00 3.10
619 620 2.414250 AATCCCCATCCCTCTCTCTC 57.586 55.000 0.00 0.00 0.00 3.20
620 621 1.556499 ATCCCCATCCCTCTCTCTCT 58.444 55.000 0.00 0.00 0.00 3.10
621 622 0.856982 TCCCCATCCCTCTCTCTCTC 59.143 60.000 0.00 0.00 0.00 3.20
622 623 0.859760 CCCCATCCCTCTCTCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
623 624 1.203050 CCCCATCCCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
624 625 1.782752 CCCATCCCTCTCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
625 626 2.224867 CCCATCCCTCTCTCTCTCTCTC 60.225 59.091 0.00 0.00 0.00 3.20
626 627 2.713167 CCATCCCTCTCTCTCTCTCTCT 59.287 54.545 0.00 0.00 0.00 3.10
627 628 3.244700 CCATCCCTCTCTCTCTCTCTCTC 60.245 56.522 0.00 0.00 0.00 3.20
675 677 4.512944 TGATTTCTTGCATCTTAGATCCGC 59.487 41.667 0.00 0.00 0.00 5.54
792 794 4.003648 ACTCCTGCTTTACAATACACTGC 58.996 43.478 0.00 0.00 0.00 4.40
795 797 2.080693 TGCTTTACAATACACTGCCCG 58.919 47.619 0.00 0.00 0.00 6.13
808 810 4.519213 ACACTGCCCGTATAAATGCTTTA 58.481 39.130 0.00 0.00 0.00 1.85
920 1072 9.045223 CGATGTCCTCATGATATTAAAGTTTCA 57.955 33.333 0.00 0.00 34.06 2.69
936 1088 9.685828 TTAAAGTTTCATTTTTCCATAGGTTCG 57.314 29.630 0.00 0.00 0.00 3.95
1067 1219 5.798125 TGTGGATCTATTCTCATGGAGTC 57.202 43.478 0.00 0.00 0.00 3.36
1137 1289 4.091549 TCGGTCTTCCTAAACCAGTGTAT 58.908 43.478 0.00 0.00 35.13 2.29
1231 1383 3.554692 CAGCGCGCCGGACTAAAG 61.555 66.667 30.33 2.51 0.00 1.85
1244 1396 4.040376 CGGACTAAAGTATCAAGCCGTAC 58.960 47.826 0.00 0.00 33.35 3.67
1279 1431 4.543692 GGTAGCATCAATGAATCATGCAC 58.456 43.478 8.93 5.39 44.57 4.57
1310 1462 3.303593 GCCATCGAATACATGCAGAACAG 60.304 47.826 0.00 0.00 0.00 3.16
1394 1546 3.763897 ACAAGATTATCAACCAGGTTGCC 59.236 43.478 25.70 12.36 42.55 4.52
1497 1649 3.437428 GCGCAATGCATCAAACAGAATA 58.563 40.909 5.91 0.00 45.45 1.75
1592 1745 4.452455 GGAGATTCACAGTTCAATTGTCGT 59.548 41.667 5.13 0.00 0.00 4.34
1622 1775 3.310227 AGCTCTACAACTACGACATCTCG 59.690 47.826 0.00 0.00 46.06 4.04
1688 1841 3.560636 ACAAAGCTACAGTGGTCACTT 57.439 42.857 0.20 0.00 40.20 3.16
1746 1917 3.259123 TGGATGATGACTATGTCCCATCG 59.741 47.826 16.28 0.00 39.81 3.84
1844 2015 0.941542 GCGGCTCTGTGTTTGTTGTA 59.058 50.000 0.00 0.00 0.00 2.41
1987 2162 9.337396 CCTCATGTTAAGGCAGTGTTATTTATA 57.663 33.333 0.00 0.00 0.00 0.98
2043 2218 7.772332 TTCTTCCTTTCAATATCTTCGCTAC 57.228 36.000 0.00 0.00 0.00 3.58
2201 2377 1.475280 TCGATTCGGTGTTACCAGAGG 59.525 52.381 6.18 0.00 38.47 3.69
2212 2388 2.435805 GTTACCAGAGGGCATCTCATGA 59.564 50.000 0.00 0.00 44.81 3.07
2344 2521 4.328983 CCTAACACACTTATTGCTACCACG 59.671 45.833 0.00 0.00 0.00 4.94
2356 2533 1.539496 GCTACCACGGCCGATCAATTA 60.539 52.381 35.90 12.33 0.00 1.40
2359 2536 1.208535 ACCACGGCCGATCAATTAAGA 59.791 47.619 35.90 0.00 0.00 2.10
2375 2552 9.739276 ATCAATTAAGAGAGTGGATGTTAACAA 57.261 29.630 13.23 0.00 0.00 2.83
2382 2559 7.102346 AGAGAGTGGATGTTAACAAAGAGATG 58.898 38.462 13.23 0.00 0.00 2.90
2394 2571 5.515797 ACAAAGAGATGCATGATTGATGG 57.484 39.130 2.46 0.00 31.99 3.51
2404 2581 6.395426 TGCATGATTGATGGTATTTCTTCC 57.605 37.500 0.00 0.00 31.99 3.46
2474 2651 3.055385 GGAGCTGTGTTCCCACTACATAA 60.055 47.826 0.00 0.00 42.34 1.90
2530 2707 0.033504 ACGTCACGCCACTCATTTCT 59.966 50.000 0.00 0.00 0.00 2.52
2580 2759 6.487668 CCATCTGTATGCTCCATATGAAAACA 59.512 38.462 3.65 0.00 0.00 2.83
2631 2812 0.819582 GGCAACCACAGCTTATGCAT 59.180 50.000 3.79 3.79 42.74 3.96
2729 2910 3.694072 GTGTGCCAATGGAAGCAATACTA 59.306 43.478 2.05 0.00 41.48 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.653888 AACGAAGGGGTTGGCGGG 62.654 66.667 0.00 0.00 0.00 6.13
2 3 3.361977 CAACGAAGGGGTTGGCGG 61.362 66.667 0.00 0.00 42.73 6.13
3 4 1.674322 ATCAACGAAGGGGTTGGCG 60.674 57.895 5.69 0.00 45.66 5.69
4 5 1.883021 CATCAACGAAGGGGTTGGC 59.117 57.895 5.69 0.00 45.66 4.52
5 6 0.893270 TGCATCAACGAAGGGGTTGG 60.893 55.000 5.69 0.00 45.66 3.77
6 7 0.958091 TTGCATCAACGAAGGGGTTG 59.042 50.000 0.00 0.00 46.70 3.77
7 8 0.958822 GTTGCATCAACGAAGGGGTT 59.041 50.000 0.00 0.00 34.63 4.11
8 9 0.893727 GGTTGCATCAACGAAGGGGT 60.894 55.000 0.00 0.00 44.36 4.95
9 10 1.595093 GGGTTGCATCAACGAAGGGG 61.595 60.000 0.00 0.00 44.36 4.79
10 11 0.609131 AGGGTTGCATCAACGAAGGG 60.609 55.000 0.00 0.00 44.36 3.95
11 12 0.804989 GAGGGTTGCATCAACGAAGG 59.195 55.000 0.00 0.00 44.36 3.46
12 13 1.813513 AGAGGGTTGCATCAACGAAG 58.186 50.000 0.00 0.00 44.36 3.79
13 14 1.879380 CAAGAGGGTTGCATCAACGAA 59.121 47.619 0.00 0.00 44.36 3.85
14 15 1.522668 CAAGAGGGTTGCATCAACGA 58.477 50.000 0.00 0.00 44.36 3.85
15 16 0.109597 GCAAGAGGGTTGCATCAACG 60.110 55.000 4.87 0.00 44.36 4.10
16 17 0.244721 GGCAAGAGGGTTGCATCAAC 59.755 55.000 11.56 1.33 46.58 3.18
17 18 0.899717 GGGCAAGAGGGTTGCATCAA 60.900 55.000 11.56 0.00 46.58 2.57
18 19 1.304381 GGGCAAGAGGGTTGCATCA 60.304 57.895 11.56 0.00 46.58 3.07
19 20 0.613012 AAGGGCAAGAGGGTTGCATC 60.613 55.000 11.56 3.68 46.58 3.91
20 21 0.613012 GAAGGGCAAGAGGGTTGCAT 60.613 55.000 11.56 0.00 46.58 3.96
21 22 1.228552 GAAGGGCAAGAGGGTTGCA 60.229 57.895 11.56 0.00 46.58 4.08
22 23 2.335712 CGAAGGGCAAGAGGGTTGC 61.336 63.158 0.97 0.97 44.22 4.17
23 24 0.955919 GTCGAAGGGCAAGAGGGTTG 60.956 60.000 0.00 0.00 0.00 3.77
24 25 1.375326 GTCGAAGGGCAAGAGGGTT 59.625 57.895 0.00 0.00 0.00 4.11
25 26 2.943978 CGTCGAAGGGCAAGAGGGT 61.944 63.158 0.00 0.00 0.00 4.34
26 27 1.961180 ATCGTCGAAGGGCAAGAGGG 61.961 60.000 0.00 0.00 0.00 4.30
27 28 0.807667 CATCGTCGAAGGGCAAGAGG 60.808 60.000 0.00 0.00 0.00 3.69
28 29 0.108615 ACATCGTCGAAGGGCAAGAG 60.109 55.000 0.00 0.00 0.00 2.85
29 30 0.389817 CACATCGTCGAAGGGCAAGA 60.390 55.000 0.00 0.00 0.00 3.02
30 31 1.361668 CCACATCGTCGAAGGGCAAG 61.362 60.000 0.00 0.00 0.00 4.01
31 32 1.375396 CCACATCGTCGAAGGGCAA 60.375 57.895 0.00 0.00 0.00 4.52
32 33 2.264480 CCACATCGTCGAAGGGCA 59.736 61.111 0.00 0.00 0.00 5.36
33 34 1.810030 GACCACATCGTCGAAGGGC 60.810 63.158 13.96 8.74 0.00 5.19
34 35 1.153628 GGACCACATCGTCGAAGGG 60.154 63.158 13.96 11.20 33.30 3.95
35 36 0.246635 AAGGACCACATCGTCGAAGG 59.753 55.000 0.00 4.58 33.30 3.46
36 37 2.080286 AAAGGACCACATCGTCGAAG 57.920 50.000 0.00 0.00 33.30 3.79
37 38 2.139917 CAAAAGGACCACATCGTCGAA 58.860 47.619 0.00 0.00 33.30 3.71
38 39 1.790755 CAAAAGGACCACATCGTCGA 58.209 50.000 0.00 0.00 33.30 4.20
39 40 0.165944 GCAAAAGGACCACATCGTCG 59.834 55.000 0.00 0.00 33.30 5.12
40 41 0.521735 GGCAAAAGGACCACATCGTC 59.478 55.000 0.00 0.00 0.00 4.20
41 42 0.179004 TGGCAAAAGGACCACATCGT 60.179 50.000 0.00 0.00 0.00 3.73
42 43 1.133025 GATGGCAAAAGGACCACATCG 59.867 52.381 0.00 0.00 39.19 3.84
43 44 1.478105 GGATGGCAAAAGGACCACATC 59.522 52.381 0.00 0.00 39.19 3.06
44 45 1.560505 GGATGGCAAAAGGACCACAT 58.439 50.000 0.00 0.00 39.19 3.21
45 46 0.893270 CGGATGGCAAAAGGACCACA 60.893 55.000 0.00 0.00 39.19 4.17
46 47 0.893727 ACGGATGGCAAAAGGACCAC 60.894 55.000 0.00 0.00 39.19 4.16
47 48 0.608035 GACGGATGGCAAAAGGACCA 60.608 55.000 0.00 0.00 41.06 4.02
48 49 1.644786 CGACGGATGGCAAAAGGACC 61.645 60.000 0.00 0.00 0.00 4.46
49 50 0.672401 TCGACGGATGGCAAAAGGAC 60.672 55.000 0.00 0.00 0.00 3.85
50 51 0.251916 ATCGACGGATGGCAAAAGGA 59.748 50.000 0.00 0.00 0.00 3.36
51 52 0.378257 CATCGACGGATGGCAAAAGG 59.622 55.000 0.00 0.00 45.15 3.11
52 53 3.903876 CATCGACGGATGGCAAAAG 57.096 52.632 0.00 0.00 45.15 2.27
60 61 3.384668 CAATAGTTCTGCATCGACGGAT 58.615 45.455 0.00 0.00 0.00 4.18
61 62 2.809446 CAATAGTTCTGCATCGACGGA 58.191 47.619 0.00 0.00 0.00 4.69
62 63 1.258982 GCAATAGTTCTGCATCGACGG 59.741 52.381 0.00 0.00 39.69 4.79
63 64 1.258982 GGCAATAGTTCTGCATCGACG 59.741 52.381 0.00 0.00 41.78 5.12
64 65 1.599542 GGGCAATAGTTCTGCATCGAC 59.400 52.381 0.00 0.00 41.78 4.20
65 66 1.486310 AGGGCAATAGTTCTGCATCGA 59.514 47.619 0.00 0.00 41.78 3.59
66 67 1.959042 AGGGCAATAGTTCTGCATCG 58.041 50.000 0.00 0.00 41.78 3.84
67 68 2.289002 CGAAGGGCAATAGTTCTGCATC 59.711 50.000 0.00 0.00 41.78 3.91
68 69 2.092968 TCGAAGGGCAATAGTTCTGCAT 60.093 45.455 0.00 0.00 41.78 3.96
69 70 1.277842 TCGAAGGGCAATAGTTCTGCA 59.722 47.619 0.00 0.00 41.78 4.41
70 71 1.936547 CTCGAAGGGCAATAGTTCTGC 59.063 52.381 0.00 0.00 39.16 4.26
71 72 2.168521 TCCTCGAAGGGCAATAGTTCTG 59.831 50.000 0.00 0.00 35.59 3.02
72 73 2.467880 TCCTCGAAGGGCAATAGTTCT 58.532 47.619 0.00 0.00 35.59 3.01
73 74 2.981859 TCCTCGAAGGGCAATAGTTC 57.018 50.000 0.00 0.00 35.59 3.01
74 75 2.505819 ACATCCTCGAAGGGCAATAGTT 59.494 45.455 0.00 0.00 35.59 2.24
75 76 2.119495 ACATCCTCGAAGGGCAATAGT 58.881 47.619 0.00 0.00 35.59 2.12
76 77 2.918712 ACATCCTCGAAGGGCAATAG 57.081 50.000 0.00 0.00 35.59 1.73
77 78 3.572642 TCTACATCCTCGAAGGGCAATA 58.427 45.455 0.00 0.00 35.59 1.90
78 79 2.398588 TCTACATCCTCGAAGGGCAAT 58.601 47.619 0.00 0.00 35.59 3.56
79 80 1.860641 TCTACATCCTCGAAGGGCAA 58.139 50.000 0.00 0.00 35.59 4.52
80 81 1.757118 CTTCTACATCCTCGAAGGGCA 59.243 52.381 0.00 0.00 35.59 5.36
81 82 1.757699 ACTTCTACATCCTCGAAGGGC 59.242 52.381 0.00 0.00 38.70 5.19
82 83 3.292460 AGACTTCTACATCCTCGAAGGG 58.708 50.000 0.00 0.00 38.70 3.95
83 84 4.677584 CAAGACTTCTACATCCTCGAAGG 58.322 47.826 0.00 0.00 38.70 3.46
84 85 4.109050 GCAAGACTTCTACATCCTCGAAG 58.891 47.826 0.00 0.00 39.89 3.79
85 86 3.119101 GGCAAGACTTCTACATCCTCGAA 60.119 47.826 0.00 0.00 0.00 3.71
86 87 2.427453 GGCAAGACTTCTACATCCTCGA 59.573 50.000 0.00 0.00 0.00 4.04
87 88 2.482142 GGGCAAGACTTCTACATCCTCG 60.482 54.545 0.00 0.00 0.00 4.63
88 89 2.501723 TGGGCAAGACTTCTACATCCTC 59.498 50.000 0.00 0.00 0.00 3.71
89 90 2.551270 TGGGCAAGACTTCTACATCCT 58.449 47.619 0.00 0.00 0.00 3.24
90 91 3.010420 GTTGGGCAAGACTTCTACATCC 58.990 50.000 0.00 0.00 0.00 3.51
91 92 3.674997 TGTTGGGCAAGACTTCTACATC 58.325 45.455 0.00 0.00 0.00 3.06
92 93 3.327757 TCTGTTGGGCAAGACTTCTACAT 59.672 43.478 0.00 0.00 0.00 2.29
93 94 2.703536 TCTGTTGGGCAAGACTTCTACA 59.296 45.455 0.00 0.00 0.00 2.74
94 95 3.402628 TCTGTTGGGCAAGACTTCTAC 57.597 47.619 0.00 0.00 0.00 2.59
95 96 5.488341 GTTATCTGTTGGGCAAGACTTCTA 58.512 41.667 0.00 0.00 0.00 2.10
96 97 4.327680 GTTATCTGTTGGGCAAGACTTCT 58.672 43.478 0.00 0.00 0.00 2.85
97 98 3.125316 CGTTATCTGTTGGGCAAGACTTC 59.875 47.826 0.00 0.00 0.00 3.01
98 99 3.074412 CGTTATCTGTTGGGCAAGACTT 58.926 45.455 0.00 0.00 0.00 3.01
99 100 2.615493 CCGTTATCTGTTGGGCAAGACT 60.615 50.000 0.00 0.00 0.00 3.24
100 101 1.737793 CCGTTATCTGTTGGGCAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
101 102 1.626321 TCCGTTATCTGTTGGGCAAGA 59.374 47.619 0.00 0.00 0.00 3.02
102 103 2.107950 TCCGTTATCTGTTGGGCAAG 57.892 50.000 0.00 0.00 0.00 4.01
103 104 2.570415 TTCCGTTATCTGTTGGGCAA 57.430 45.000 0.00 0.00 0.00 4.52
104 105 2.432444 CTTTCCGTTATCTGTTGGGCA 58.568 47.619 0.00 0.00 0.00 5.36
105 106 1.743394 CCTTTCCGTTATCTGTTGGGC 59.257 52.381 0.00 0.00 0.00 5.36
106 107 2.747446 CACCTTTCCGTTATCTGTTGGG 59.253 50.000 0.00 0.00 0.00 4.12
107 108 2.747446 CCACCTTTCCGTTATCTGTTGG 59.253 50.000 0.00 0.00 0.00 3.77
108 109 2.747446 CCCACCTTTCCGTTATCTGTTG 59.253 50.000 0.00 0.00 0.00 3.33
109 110 2.878526 GCCCACCTTTCCGTTATCTGTT 60.879 50.000 0.00 0.00 0.00 3.16
110 111 1.339727 GCCCACCTTTCCGTTATCTGT 60.340 52.381 0.00 0.00 0.00 3.41
111 112 1.379527 GCCCACCTTTCCGTTATCTG 58.620 55.000 0.00 0.00 0.00 2.90
112 113 0.255033 GGCCCACCTTTCCGTTATCT 59.745 55.000 0.00 0.00 0.00 1.98
113 114 0.750546 GGGCCCACCTTTCCGTTATC 60.751 60.000 19.95 0.00 35.85 1.75
114 115 1.305287 GGGCCCACCTTTCCGTTAT 59.695 57.895 19.95 0.00 35.85 1.89
115 116 1.717038 TTGGGCCCACCTTTCCGTTA 61.717 55.000 28.70 1.58 41.11 3.18
116 117 2.994643 CTTGGGCCCACCTTTCCGTT 62.995 60.000 28.70 0.00 41.11 4.44
117 118 3.503839 TTGGGCCCACCTTTCCGT 61.504 61.111 28.70 0.00 41.11 4.69
118 119 2.676471 CTTGGGCCCACCTTTCCG 60.676 66.667 28.70 2.90 41.11 4.30
119 120 2.283894 CCTTGGGCCCACCTTTCC 60.284 66.667 28.70 0.00 41.11 3.13
120 121 1.155155 TTCCTTGGGCCCACCTTTC 59.845 57.895 28.70 0.00 41.11 2.62
121 122 1.152333 GTTCCTTGGGCCCACCTTT 60.152 57.895 28.70 0.00 41.11 3.11
122 123 1.664956 AAGTTCCTTGGGCCCACCTT 61.665 55.000 28.70 18.00 41.11 3.50
123 124 1.664956 AAAGTTCCTTGGGCCCACCT 61.665 55.000 28.70 12.68 41.11 4.00
124 125 0.762842 AAAAGTTCCTTGGGCCCACC 60.763 55.000 28.70 10.33 40.81 4.61
125 126 0.679505 GAAAAGTTCCTTGGGCCCAC 59.320 55.000 28.70 13.50 0.00 4.61
126 127 0.825840 CGAAAAGTTCCTTGGGCCCA 60.826 55.000 24.45 24.45 0.00 5.36
127 128 1.532604 CCGAAAAGTTCCTTGGGCCC 61.533 60.000 17.59 17.59 0.00 5.80
128 129 1.964448 CCGAAAAGTTCCTTGGGCC 59.036 57.895 0.00 0.00 0.00 5.80
129 130 1.289066 GCCGAAAAGTTCCTTGGGC 59.711 57.895 0.00 0.00 31.58 5.36
130 131 0.539669 AGGCCGAAAAGTTCCTTGGG 60.540 55.000 0.00 0.00 0.00 4.12
131 132 1.810755 GTAGGCCGAAAAGTTCCTTGG 59.189 52.381 0.00 0.00 0.00 3.61
132 133 2.225727 GTGTAGGCCGAAAAGTTCCTTG 59.774 50.000 0.00 0.00 0.00 3.61
133 134 2.105993 AGTGTAGGCCGAAAAGTTCCTT 59.894 45.455 0.00 0.00 0.00 3.36
134 135 1.697982 AGTGTAGGCCGAAAAGTTCCT 59.302 47.619 0.00 0.00 0.00 3.36
135 136 2.180432 AGTGTAGGCCGAAAAGTTCC 57.820 50.000 0.00 0.00 0.00 3.62
136 137 3.925299 GTCTAGTGTAGGCCGAAAAGTTC 59.075 47.826 0.00 0.00 0.00 3.01
137 138 3.306571 GGTCTAGTGTAGGCCGAAAAGTT 60.307 47.826 0.00 0.00 41.34 2.66
138 139 2.233186 GGTCTAGTGTAGGCCGAAAAGT 59.767 50.000 0.00 0.00 41.34 2.66
139 140 2.889852 GGTCTAGTGTAGGCCGAAAAG 58.110 52.381 0.00 0.00 41.34 2.27
146 147 5.791666 AGTACTTTTTGGTCTAGTGTAGGC 58.208 41.667 0.00 0.00 0.00 3.93
147 148 8.672823 AAAAGTACTTTTTGGTCTAGTGTAGG 57.327 34.615 24.66 0.00 39.52 3.18
148 149 8.485591 CGAAAAGTACTTTTTGGTCTAGTGTAG 58.514 37.037 29.54 7.06 42.26 2.74
149 150 8.356533 CGAAAAGTACTTTTTGGTCTAGTGTA 57.643 34.615 29.54 0.00 42.26 2.90
150 151 7.242914 CGAAAAGTACTTTTTGGTCTAGTGT 57.757 36.000 29.54 9.71 42.26 3.55
159 160 5.684550 ACTAGGCCGAAAAGTACTTTTTG 57.315 39.130 29.97 29.97 42.26 2.44
160 161 8.534496 TCTATACTAGGCCGAAAAGTACTTTTT 58.466 33.333 29.26 17.98 42.26 1.94
161 162 7.978414 GTCTATACTAGGCCGAAAAGTACTTTT 59.022 37.037 29.12 29.12 44.59 2.27
162 163 7.417229 GGTCTATACTAGGCCGAAAAGTACTTT 60.417 40.741 15.22 15.22 41.34 2.66
163 164 6.040278 GGTCTATACTAGGCCGAAAAGTACTT 59.960 42.308 1.12 1.12 41.34 2.24
164 165 5.534278 GGTCTATACTAGGCCGAAAAGTACT 59.466 44.000 11.04 0.00 41.34 2.73
165 166 5.767269 GGTCTATACTAGGCCGAAAAGTAC 58.233 45.833 11.04 3.66 41.34 2.73
167 168 4.933505 GGTCTATACTAGGCCGAAAAGT 57.066 45.455 0.00 2.51 41.34 2.66
175 176 9.445878 AAAAGTACTTTTTGGTCTATACTAGGC 57.554 33.333 24.66 0.00 39.52 3.93
188 189 5.427036 TGTAGGCCGAAAAGTACTTTTTG 57.573 39.130 29.97 29.97 42.26 2.44
189 190 6.644248 AATGTAGGCCGAAAAGTACTTTTT 57.356 33.333 29.26 17.98 42.26 1.94
190 191 6.263617 TCAAATGTAGGCCGAAAAGTACTTTT 59.736 34.615 29.12 29.12 44.59 2.27
191 192 5.766174 TCAAATGTAGGCCGAAAAGTACTTT 59.234 36.000 15.22 15.22 0.00 2.66
192 193 5.180680 GTCAAATGTAGGCCGAAAAGTACTT 59.819 40.000 1.12 1.12 0.00 2.24
193 194 4.694037 GTCAAATGTAGGCCGAAAAGTACT 59.306 41.667 0.00 0.00 0.00 2.73
194 195 4.142752 GGTCAAATGTAGGCCGAAAAGTAC 60.143 45.833 0.00 0.00 0.00 2.73
195 196 4.004982 GGTCAAATGTAGGCCGAAAAGTA 58.995 43.478 0.00 0.00 0.00 2.24
196 197 2.817844 GGTCAAATGTAGGCCGAAAAGT 59.182 45.455 0.00 0.00 0.00 2.66
197 198 2.817258 TGGTCAAATGTAGGCCGAAAAG 59.183 45.455 0.00 0.00 0.00 2.27
198 199 2.865079 TGGTCAAATGTAGGCCGAAAA 58.135 42.857 0.00 0.00 0.00 2.29
199 200 2.570415 TGGTCAAATGTAGGCCGAAA 57.430 45.000 0.00 0.00 0.00 3.46
200 201 2.570415 TTGGTCAAATGTAGGCCGAA 57.430 45.000 0.00 0.00 0.00 4.30
201 202 2.570415 TTTGGTCAAATGTAGGCCGA 57.430 45.000 0.00 0.00 0.00 5.54
202 203 3.651803 TTTTTGGTCAAATGTAGGCCG 57.348 42.857 0.00 0.00 0.00 6.13
220 221 3.351740 CTGTTTGGCCCAAAAGGTTTTT 58.648 40.909 11.20 0.00 35.03 1.94
221 222 2.943646 GCTGTTTGGCCCAAAAGGTTTT 60.944 45.455 11.20 0.00 35.03 2.43
222 223 1.408127 GCTGTTTGGCCCAAAAGGTTT 60.408 47.619 11.20 0.00 35.03 3.27
223 224 0.180171 GCTGTTTGGCCCAAAAGGTT 59.820 50.000 11.20 0.00 35.03 3.50
224 225 0.980231 TGCTGTTTGGCCCAAAAGGT 60.980 50.000 11.20 0.00 35.03 3.50
225 226 0.249996 CTGCTGTTTGGCCCAAAAGG 60.250 55.000 11.20 7.82 35.03 3.11
226 227 0.881600 GCTGCTGTTTGGCCCAAAAG 60.882 55.000 11.20 11.49 35.03 2.27
227 228 1.145819 GCTGCTGTTTGGCCCAAAA 59.854 52.632 11.20 0.87 35.03 2.44
228 229 2.806009 GGCTGCTGTTTGGCCCAAA 61.806 57.895 4.38 4.38 39.96 3.28
229 230 3.233231 GGCTGCTGTTTGGCCCAA 61.233 61.111 0.00 0.00 39.96 4.12
232 233 2.362329 TTTTCGGCTGCTGTTTGGCC 62.362 55.000 8.55 0.00 42.18 5.36
233 234 1.067250 TTTTCGGCTGCTGTTTGGC 59.933 52.632 8.55 0.00 0.00 4.52
234 235 0.102120 TGTTTTCGGCTGCTGTTTGG 59.898 50.000 8.55 0.00 0.00 3.28
235 236 1.480205 CTGTTTTCGGCTGCTGTTTG 58.520 50.000 8.55 0.00 0.00 2.93
236 237 3.944871 CTGTTTTCGGCTGCTGTTT 57.055 47.368 8.55 0.00 0.00 2.83
255 256 1.508088 GTTGAGCTGGCCGAAATGG 59.492 57.895 0.00 0.00 42.50 3.16
256 257 1.243342 TGGTTGAGCTGGCCGAAATG 61.243 55.000 0.00 0.00 0.00 2.32
257 258 1.074775 TGGTTGAGCTGGCCGAAAT 59.925 52.632 0.00 0.00 0.00 2.17
258 259 1.896660 GTGGTTGAGCTGGCCGAAA 60.897 57.895 0.00 0.00 0.00 3.46
259 260 2.281484 GTGGTTGAGCTGGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
260 261 2.337879 AAAGTGGTTGAGCTGGCCGA 62.338 55.000 0.00 0.00 0.00 5.54
261 262 1.455383 AAAAGTGGTTGAGCTGGCCG 61.455 55.000 0.00 0.00 0.00 6.13
262 263 0.315251 GAAAAGTGGTTGAGCTGGCC 59.685 55.000 0.00 0.00 0.00 5.36
263 264 0.040067 CGAAAAGTGGTTGAGCTGGC 60.040 55.000 0.00 0.00 0.00 4.85
264 265 0.593128 CCGAAAAGTGGTTGAGCTGG 59.407 55.000 0.00 0.00 0.00 4.85
265 266 0.040067 GCCGAAAAGTGGTTGAGCTG 60.040 55.000 0.00 0.00 0.00 4.24
266 267 1.172812 GGCCGAAAAGTGGTTGAGCT 61.173 55.000 0.00 0.00 0.00 4.09
267 268 1.285950 GGCCGAAAAGTGGTTGAGC 59.714 57.895 0.00 0.00 0.00 4.26
268 269 1.068333 CATGGCCGAAAAGTGGTTGAG 60.068 52.381 0.00 0.00 0.00 3.02
269 270 0.958091 CATGGCCGAAAAGTGGTTGA 59.042 50.000 0.00 0.00 0.00 3.18
270 271 0.038343 CCATGGCCGAAAAGTGGTTG 60.038 55.000 0.00 0.00 0.00 3.77
271 272 1.815817 GCCATGGCCGAAAAGTGGTT 61.816 55.000 27.24 0.00 34.56 3.67
272 273 2.275380 GCCATGGCCGAAAAGTGGT 61.275 57.895 27.24 0.00 34.56 4.16
273 274 1.814772 TTGCCATGGCCGAAAAGTGG 61.815 55.000 33.44 0.31 41.09 4.00
274 275 0.388907 CTTGCCATGGCCGAAAAGTG 60.389 55.000 33.44 10.57 41.09 3.16
275 276 1.535204 CCTTGCCATGGCCGAAAAGT 61.535 55.000 33.44 0.00 41.09 2.66
276 277 1.216178 CCTTGCCATGGCCGAAAAG 59.784 57.895 33.44 26.85 41.09 2.27
277 278 2.941616 GCCTTGCCATGGCCGAAAA 61.942 57.895 33.44 19.60 44.32 2.29
278 279 3.381136 GCCTTGCCATGGCCGAAA 61.381 61.111 33.44 19.97 44.32 3.46
288 289 1.303806 TAGGGTTTTCGGCCTTGCC 60.304 57.895 0.00 0.00 46.75 4.52
289 290 0.608308 AGTAGGGTTTTCGGCCTTGC 60.608 55.000 0.00 0.00 0.00 4.01
290 291 1.810755 GAAGTAGGGTTTTCGGCCTTG 59.189 52.381 0.00 0.00 0.00 3.61
291 292 1.609841 CGAAGTAGGGTTTTCGGCCTT 60.610 52.381 0.00 0.00 41.69 4.35
292 293 0.036671 CGAAGTAGGGTTTTCGGCCT 60.037 55.000 0.00 0.00 41.69 5.19
293 294 2.463592 CGAAGTAGGGTTTTCGGCC 58.536 57.895 0.00 0.00 41.69 6.13
296 297 0.320946 TGGCCGAAGTAGGGTTTTCG 60.321 55.000 0.00 0.04 44.17 3.46
297 298 1.538512 GTTGGCCGAAGTAGGGTTTTC 59.461 52.381 0.00 0.00 0.00 2.29
298 299 1.133730 TGTTGGCCGAAGTAGGGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
299 300 0.475044 TGTTGGCCGAAGTAGGGTTT 59.525 50.000 0.00 0.00 0.00 3.27
300 301 0.036306 CTGTTGGCCGAAGTAGGGTT 59.964 55.000 0.00 0.00 0.00 4.11
301 302 1.125711 ACTGTTGGCCGAAGTAGGGT 61.126 55.000 0.00 0.00 0.00 4.34
302 303 0.036306 AACTGTTGGCCGAAGTAGGG 59.964 55.000 0.00 0.00 0.00 3.53
303 304 1.156736 CAACTGTTGGCCGAAGTAGG 58.843 55.000 12.66 0.00 0.00 3.18
304 305 1.156736 CCAACTGTTGGCCGAAGTAG 58.843 55.000 25.21 0.24 45.17 2.57
305 306 3.315765 CCAACTGTTGGCCGAAGTA 57.684 52.632 25.21 0.00 45.17 2.24
306 307 4.157607 CCAACTGTTGGCCGAAGT 57.842 55.556 25.21 0.00 45.17 3.01
314 315 2.287368 GGTAGTTTTCGGCCAACTGTTG 60.287 50.000 15.42 13.50 35.95 3.33
315 316 1.951602 GGTAGTTTTCGGCCAACTGTT 59.048 47.619 15.42 0.00 35.95 3.16
316 317 1.142262 AGGTAGTTTTCGGCCAACTGT 59.858 47.619 15.42 0.02 35.95 3.55
317 318 1.892209 AGGTAGTTTTCGGCCAACTG 58.108 50.000 15.42 0.00 35.95 3.16
318 319 2.651382 AAGGTAGTTTTCGGCCAACT 57.349 45.000 11.36 11.36 38.13 3.16
319 320 3.635331 GAAAAGGTAGTTTTCGGCCAAC 58.365 45.455 2.24 0.00 43.54 3.77
320 321 3.994204 GAAAAGGTAGTTTTCGGCCAA 57.006 42.857 2.24 0.00 43.54 4.52
327 328 1.241165 CGGGCCGAAAAGGTAGTTTT 58.759 50.000 24.41 0.00 43.70 2.43
328 329 1.239296 GCGGGCCGAAAAGGTAGTTT 61.239 55.000 33.44 0.00 43.70 2.66
329 330 1.673337 GCGGGCCGAAAAGGTAGTT 60.673 57.895 33.44 0.00 43.70 2.24
330 331 2.046604 GCGGGCCGAAAAGGTAGT 60.047 61.111 33.44 0.00 43.70 2.73
331 332 2.046700 TGCGGGCCGAAAAGGTAG 60.047 61.111 33.44 0.00 43.70 3.18
332 333 2.358984 GTGCGGGCCGAAAAGGTA 60.359 61.111 33.44 2.65 43.70 3.08
335 336 4.383602 CACGTGCGGGCCGAAAAG 62.384 66.667 33.44 19.83 0.00 2.27
347 348 2.507110 CTAGGACCCTGTGCCACGTG 62.507 65.000 9.08 9.08 0.00 4.49
348 349 2.203728 TAGGACCCTGTGCCACGT 60.204 61.111 0.00 0.00 0.00 4.49
349 350 1.827399 AACTAGGACCCTGTGCCACG 61.827 60.000 0.00 0.00 0.00 4.94
350 351 0.400594 AAACTAGGACCCTGTGCCAC 59.599 55.000 0.00 0.00 0.00 5.01
351 352 1.145571 AAAACTAGGACCCTGTGCCA 58.854 50.000 0.00 0.00 0.00 4.92
352 353 1.534729 CAAAACTAGGACCCTGTGCC 58.465 55.000 0.00 0.00 0.00 5.01
353 354 0.881796 GCAAAACTAGGACCCTGTGC 59.118 55.000 0.00 0.00 0.00 4.57
354 355 2.270352 TGCAAAACTAGGACCCTGTG 57.730 50.000 0.00 0.00 0.00 3.66
355 356 3.525800 AATGCAAAACTAGGACCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
356 357 4.871933 AAAATGCAAAACTAGGACCCTG 57.128 40.909 0.00 0.00 0.00 4.45
376 377 9.168451 TCGGAAACTATAGCACATAATGAAAAA 57.832 29.630 0.00 0.00 0.00 1.94
377 378 8.725405 TCGGAAACTATAGCACATAATGAAAA 57.275 30.769 0.00 0.00 0.00 2.29
378 379 8.725405 TTCGGAAACTATAGCACATAATGAAA 57.275 30.769 0.00 0.00 0.00 2.69
379 380 8.725405 TTTCGGAAACTATAGCACATAATGAA 57.275 30.769 0.00 0.00 0.00 2.57
380 381 8.902540 ATTTCGGAAACTATAGCACATAATGA 57.097 30.769 5.12 0.00 0.00 2.57
381 382 9.385902 CAATTTCGGAAACTATAGCACATAATG 57.614 33.333 5.12 0.00 0.00 1.90
382 383 8.076178 GCAATTTCGGAAACTATAGCACATAAT 58.924 33.333 5.12 0.00 0.00 1.28
383 384 7.282224 AGCAATTTCGGAAACTATAGCACATAA 59.718 33.333 5.12 0.00 0.00 1.90
384 385 6.765989 AGCAATTTCGGAAACTATAGCACATA 59.234 34.615 5.12 0.00 0.00 2.29
385 386 5.590259 AGCAATTTCGGAAACTATAGCACAT 59.410 36.000 5.12 0.00 0.00 3.21
386 387 4.941263 AGCAATTTCGGAAACTATAGCACA 59.059 37.500 5.12 0.00 0.00 4.57
387 388 5.485662 AGCAATTTCGGAAACTATAGCAC 57.514 39.130 5.12 0.00 0.00 4.40
388 389 6.110033 TGTAGCAATTTCGGAAACTATAGCA 58.890 36.000 5.12 0.00 0.00 3.49
389 390 6.598753 TGTAGCAATTTCGGAAACTATAGC 57.401 37.500 5.12 5.94 0.00 2.97
392 393 9.783256 GTATTTTGTAGCAATTTCGGAAACTAT 57.217 29.630 5.12 0.00 0.00 2.12
393 394 7.958567 CGTATTTTGTAGCAATTTCGGAAACTA 59.041 33.333 5.12 0.56 0.00 2.24
394 395 6.799925 CGTATTTTGTAGCAATTTCGGAAACT 59.200 34.615 5.12 1.53 0.00 2.66
395 396 6.579666 ACGTATTTTGTAGCAATTTCGGAAAC 59.420 34.615 5.12 0.00 0.00 2.78
396 397 6.670233 ACGTATTTTGTAGCAATTTCGGAAA 58.330 32.000 5.52 5.52 0.00 3.13
397 398 6.073167 TGACGTATTTTGTAGCAATTTCGGAA 60.073 34.615 0.00 0.00 0.00 4.30
398 399 5.408909 TGACGTATTTTGTAGCAATTTCGGA 59.591 36.000 0.00 0.00 0.00 4.55
399 400 5.623335 TGACGTATTTTGTAGCAATTTCGG 58.377 37.500 0.00 0.00 0.00 4.30
400 401 8.114290 ACTATGACGTATTTTGTAGCAATTTCG 58.886 33.333 0.00 0.00 0.00 3.46
401 402 9.769093 AACTATGACGTATTTTGTAGCAATTTC 57.231 29.630 0.00 0.00 0.00 2.17
404 405 9.554724 CAAAACTATGACGTATTTTGTAGCAAT 57.445 29.630 0.00 0.00 37.30 3.56
405 406 8.775527 TCAAAACTATGACGTATTTTGTAGCAA 58.224 29.630 15.25 0.00 40.98 3.91
406 407 8.312896 TCAAAACTATGACGTATTTTGTAGCA 57.687 30.769 15.25 0.00 40.98 3.49
407 408 9.601971 TTTCAAAACTATGACGTATTTTGTAGC 57.398 29.630 15.25 0.00 40.98 3.58
434 435 0.958876 GGGTGAGCGGACGGATTTTT 60.959 55.000 0.00 0.00 0.00 1.94
435 436 1.376812 GGGTGAGCGGACGGATTTT 60.377 57.895 0.00 0.00 0.00 1.82
436 437 2.240162 GAGGGTGAGCGGACGGATTT 62.240 60.000 0.00 0.00 0.00 2.17
437 438 2.683933 AGGGTGAGCGGACGGATT 60.684 61.111 0.00 0.00 0.00 3.01
438 439 3.148279 GAGGGTGAGCGGACGGAT 61.148 66.667 0.00 0.00 0.00 4.18
614 615 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
615 616 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
616 617 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
617 618 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
618 619 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
619 620 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
620 621 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
621 622 4.892345 TCAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
622 623 4.646945 GTCAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
623 624 4.648762 AGTCAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
624 625 4.614475 AGTCAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
625 626 4.498850 CGAGTCAGAGAGAGAGAGAGAGAG 60.499 54.167 0.00 0.00 0.00 3.20
626 627 3.381590 CGAGTCAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
627 628 3.131223 ACGAGTCAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
675 677 2.591571 TGAGCATCAGAACGGATGAG 57.408 50.000 16.39 0.00 46.00 2.90
920 1072 6.717997 ACTTTGTACCGAACCTATGGAAAAAT 59.282 34.615 0.00 0.00 0.00 1.82
925 1077 4.529377 AGAACTTTGTACCGAACCTATGGA 59.471 41.667 0.00 0.00 0.00 3.41
936 1088 9.177304 GCACTAACAATTAAAGAACTTTGTACC 57.823 33.333 9.66 0.00 32.31 3.34
1122 1274 5.133941 TGCACAAAATACACTGGTTTAGGA 58.866 37.500 0.00 0.00 0.00 2.94
1137 1289 6.146601 TCTTGTGAAAGATGATGCACAAAA 57.853 33.333 0.00 0.00 46.66 2.44
1231 1383 4.041740 TCTGACATGTACGGCTTGATAC 57.958 45.455 0.00 0.00 0.00 2.24
1244 1396 2.715749 TGCTACCCCATTCTGACATG 57.284 50.000 0.00 0.00 0.00 3.21
1310 1462 1.339151 CCACAAGCACCTTACCCTCTC 60.339 57.143 0.00 0.00 0.00 3.20
1384 1536 0.179018 GACTGTTCTGGCAACCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
1394 1546 5.471116 TGGTTGATTTCATCTGACTGTTCTG 59.529 40.000 0.00 0.00 0.00 3.02
1424 1576 7.994425 TTAGTTATCTGCTTGATGGTTTTGA 57.006 32.000 3.60 0.00 36.65 2.69
1497 1649 0.751643 AAACGGCAGCAAGGTCTTGT 60.752 50.000 11.71 0.00 42.31 3.16
1688 1841 5.735285 ATCATCGGCTGAATCTTCATCTA 57.265 39.130 0.00 0.00 37.44 1.98
1746 1917 1.196354 GCTCAATATGACGCTCATGGC 59.804 52.381 9.77 0.00 37.70 4.40
2201 2377 5.633830 TTTGTTCTTCTTCATGAGATGCC 57.366 39.130 0.00 0.00 33.49 4.40
2212 2388 3.532641 AGGCCAGGATTTGTTCTTCTT 57.467 42.857 5.01 0.00 0.00 2.52
2344 2521 3.134458 CCACTCTCTTAATTGATCGGCC 58.866 50.000 0.00 0.00 0.00 6.13
2356 2533 7.067496 TCTCTTTGTTAACATCCACTCTCTT 57.933 36.000 9.56 0.00 0.00 2.85
2359 2536 5.645497 GCATCTCTTTGTTAACATCCACTCT 59.355 40.000 9.56 0.00 0.00 3.24
2375 2552 7.724506 AGAAATACCATCAATCATGCATCTCTT 59.275 33.333 0.00 0.00 0.00 2.85
2382 2559 6.263842 TGAGGAAGAAATACCATCAATCATGC 59.736 38.462 0.00 0.00 0.00 4.06
2404 2581 4.154195 ACTGCGCTTATAAAACCTTGTGAG 59.846 41.667 9.73 0.00 0.00 3.51
2474 2651 1.140312 AATCCATCCCACCGTGCTAT 58.860 50.000 0.00 0.00 0.00 2.97
2530 2707 9.013229 GGTTGATATGGCAGATGAATATGTTTA 57.987 33.333 0.00 0.00 0.00 2.01
2580 2759 4.322057 AATCTAGCACCAACCAGGATTT 57.678 40.909 0.00 0.00 41.22 2.17
2631 2812 1.227527 CACTGGACAGAACCGCACA 60.228 57.895 6.29 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.