Multiple sequence alignment - TraesCS3A01G122100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G122100 chr3A 100.000 6047 0 0 1 6047 95949768 95943722 0.000000e+00 11167.0
1 TraesCS3A01G122100 chr3A 95.025 201 9 1 1 201 96226705 96226506 1.270000e-81 315.0
2 TraesCS3A01G122100 chr3A 81.429 280 34 10 2314 2581 95947178 95946905 4.750000e-51 213.0
3 TraesCS3A01G122100 chr3A 81.429 280 34 10 2591 2864 95947455 95947188 4.750000e-51 213.0
4 TraesCS3A01G122100 chr3A 92.593 54 3 1 5340 5392 731891301 731891354 6.500000e-10 76.8
5 TraesCS3A01G122100 chr3D 91.386 3529 197 45 2389 5872 81695018 81691552 0.000000e+00 4734.0
6 TraesCS3A01G122100 chr3D 96.343 1340 38 6 1052 2390 81696409 81695080 0.000000e+00 2193.0
7 TraesCS3A01G122100 chr3D 92.368 511 31 3 1 504 81704154 81703645 0.000000e+00 721.0
8 TraesCS3A01G122100 chr3D 83.333 336 18 10 733 1051 81696887 81696573 5.970000e-70 276.0
9 TraesCS3A01G122100 chr3D 82.915 199 20 8 2669 2864 81695012 81694825 3.750000e-37 167.0
10 TraesCS3A01G122100 chr3D 91.753 97 6 2 503 597 81697548 81697452 3.800000e-27 134.0
11 TraesCS3A01G122100 chr3D 97.727 44 1 0 1010 1053 81696573 81696530 6.500000e-10 76.8
12 TraesCS3A01G122100 chr3B 92.832 2302 117 19 1060 3355 127862582 127860323 0.000000e+00 3293.0
13 TraesCS3A01G122100 chr3B 90.537 1881 94 38 3562 5437 127856824 127855023 0.000000e+00 2410.0
14 TraesCS3A01G122100 chr3B 85.950 968 100 13 20 957 127864507 127863546 0.000000e+00 1002.0
15 TraesCS3A01G122100 chr3B 81.429 280 29 17 2311 2581 127861072 127860807 2.210000e-49 207.0
16 TraesCS3A01G122100 chr3B 81.557 244 27 8 2591 2832 127861328 127861101 1.030000e-42 185.0
17 TraesCS3A01G122100 chr3B 97.333 75 0 1 997 1069 127863257 127863183 6.360000e-25 126.0
18 TraesCS3A01G122100 chr5B 90.020 1012 76 9 4135 5127 281579873 281578868 0.000000e+00 1286.0
19 TraesCS3A01G122100 chr5B 84.712 1040 120 17 1123 2160 281581665 281580663 0.000000e+00 1003.0
20 TraesCS3A01G122100 chr5B 96.078 51 0 2 5339 5387 448464746 448464696 1.400000e-11 82.4
21 TraesCS3A01G122100 chr5B 97.727 44 0 1 5342 5384 507119336 507119293 2.340000e-09 75.0
22 TraesCS3A01G122100 chr5D 90.418 981 69 9 4140 5101 247074694 247075668 0.000000e+00 1267.0
23 TraesCS3A01G122100 chr5D 84.819 1021 120 20 1142 2160 247072652 247073639 0.000000e+00 994.0
24 TraesCS3A01G122100 chr5D 95.745 47 0 2 5340 5384 24356380 24356334 2.340000e-09 75.0
25 TraesCS3A01G122100 chr5A 88.282 1007 77 13 4140 5127 331114916 331115900 0.000000e+00 1168.0
26 TraesCS3A01G122100 chr5A 85.015 1021 115 13 1142 2160 331112936 331113920 0.000000e+00 1003.0
27 TraesCS3A01G122100 chr7A 95.833 48 0 2 5340 5385 185591617 185591570 6.500000e-10 76.8
28 TraesCS3A01G122100 chr4A 97.727 44 0 1 5342 5384 614418912 614418955 2.340000e-09 75.0
29 TraesCS3A01G122100 chr1A 97.727 44 0 1 5345 5387 13315394 13315351 2.340000e-09 75.0
30 TraesCS3A01G122100 chr1A 97.727 44 0 1 5342 5384 320485630 320485673 2.340000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G122100 chr3A 95943722 95949768 6046 True 3864.333333 11167 87.619333 1 6047 3 chr3A.!!$R2 6046
1 TraesCS3A01G122100 chr3D 81691552 81697548 5996 True 1263.466667 4734 90.576167 503 5872 6 chr3D.!!$R2 5369
2 TraesCS3A01G122100 chr3D 81703645 81704154 509 True 721.000000 721 92.368000 1 504 1 chr3D.!!$R1 503
3 TraesCS3A01G122100 chr3B 127855023 127864507 9484 True 1203.833333 3293 88.273000 20 5437 6 chr3B.!!$R1 5417
4 TraesCS3A01G122100 chr5B 281578868 281581665 2797 True 1144.500000 1286 87.366000 1123 5127 2 chr5B.!!$R3 4004
5 TraesCS3A01G122100 chr5D 247072652 247075668 3016 False 1130.500000 1267 87.618500 1142 5101 2 chr5D.!!$F1 3959
6 TraesCS3A01G122100 chr5A 331112936 331115900 2964 False 1085.500000 1168 86.648500 1142 5127 2 chr5A.!!$F1 3985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.179045 CCATCCGATGGTCCAACTCC 60.179 60.0 18.13 0.00 45.54 3.85 F
797 1126 0.471211 TCACAGAACGGGGAGGAAGT 60.471 55.0 0.00 0.00 0.00 3.01 F
2231 3621 0.535335 TAGGTGTGTTGAGCCGGATC 59.465 55.0 14.17 14.17 0.00 3.36 F
2995 4491 0.328450 TGGCCTGGGGAGGAATACAT 60.328 55.0 3.32 0.00 0.00 2.29 F
3350 4869 1.002069 TGCTCCATTCCCATCCTTGT 58.998 50.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 2995 0.664224 GGATCTCGTCTCCTTCGACC 59.336 60.000 0.00 0.00 33.71 4.79 R
2774 4261 0.314935 CCTCACACCAACCACATTGC 59.685 55.000 0.00 0.00 36.93 3.56 R
3217 4730 1.159905 TGGTTCCTCCAGGCCAGTA 59.840 57.895 5.01 0.00 41.93 2.74 R
4656 9516 1.414181 ACGTGCTGGATATCAGGGAAG 59.586 52.381 4.83 3.01 43.54 3.46 R
5146 10006 2.376518 AGGAGGGAACTTCAGATTTGCA 59.623 45.455 0.00 0.00 44.43 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.065371 CCAACCGAATCTAAGCCATCAAC 59.935 47.826 0.00 0.00 0.00 3.18
100 101 0.179045 CCATCCGATGGTCCAACTCC 60.179 60.000 18.13 0.00 45.54 3.85
209 210 5.163195 ACTCACCCATATTACCAGCTAAAGG 60.163 44.000 0.00 0.00 0.00 3.11
270 271 6.183360 GGATCTGTACCCACATCTTAAGCTTA 60.183 42.308 0.86 0.86 33.14 3.09
334 335 4.221041 GTGCCACTAGGACTAGACTTTCTT 59.779 45.833 13.00 0.00 36.97 2.52
371 372 2.436173 CTCCCTCTATCACTTTGTCCCC 59.564 54.545 0.00 0.00 0.00 4.81
392 393 4.467082 CCCAATCTCCCAATCATGAAAACA 59.533 41.667 0.00 0.00 0.00 2.83
424 432 1.534729 GCCCCAACGATCTGAACTTT 58.465 50.000 0.00 0.00 0.00 2.66
501 509 2.948115 TCCCCATAATCGTTCGAGGTA 58.052 47.619 0.80 0.00 0.00 3.08
542 552 3.748568 CCATCGAGTAGAGATCATCGACA 59.251 47.826 8.48 0.00 45.83 4.35
555 565 2.237143 TCATCGACAATGGCTCCTCTTT 59.763 45.455 0.00 0.00 35.94 2.52
580 590 6.549736 TCTCAAAGACGATATTATCCAGGTCA 59.450 38.462 10.75 0.00 0.00 4.02
586 596 5.338632 ACGATATTATCCAGGTCATACCCA 58.661 41.667 0.00 0.00 39.75 4.51
654 666 1.520120 CCGACGCAGATGCATCAGT 60.520 57.895 27.81 22.46 42.21 3.41
676 688 2.090210 TGCCATGGGTAGGATCCTTCTA 60.090 50.000 22.03 11.30 0.00 2.10
679 691 4.235372 CCATGGGTAGGATCCTTCTAGTT 58.765 47.826 22.03 0.00 0.00 2.24
683 695 5.538877 TGGGTAGGATCCTTCTAGTTTCAT 58.461 41.667 22.03 0.00 0.00 2.57
706 718 2.554564 CCAAACCCTAGAAACTCCACCC 60.555 54.545 0.00 0.00 0.00 4.61
777 1106 1.899054 CCTAGATCAGCCCGAGCGA 60.899 63.158 0.00 0.00 46.67 4.93
780 1109 0.537371 TAGATCAGCCCGAGCGATCA 60.537 55.000 19.59 8.26 44.41 2.92
797 1126 0.471211 TCACAGAACGGGGAGGAAGT 60.471 55.000 0.00 0.00 0.00 3.01
829 1158 1.884075 CGGGGACTCAATGTCGGACA 61.884 60.000 14.01 14.01 46.24 4.02
830 1159 0.541863 GGGGACTCAATGTCGGACAT 59.458 55.000 17.62 17.62 46.24 3.06
848 1177 5.175859 GGACATTACAACGAGAGGATGAAA 58.824 41.667 0.00 0.00 0.00 2.69
856 1185 1.757118 CGAGAGGATGAAACCCTAGCA 59.243 52.381 0.00 0.00 33.36 3.49
869 1198 2.573915 ACCCTAGCAAGAGAGGAAAAGG 59.426 50.000 0.00 0.00 34.46 3.11
881 1227 6.853490 AGAGAGGAAAAGGTAATGGACTTTT 58.147 36.000 0.00 0.00 46.32 2.27
913 1259 1.846007 TTTCGCATAATTGGCCCACT 58.154 45.000 0.00 0.00 0.00 4.00
972 1587 9.938670 TTTCTTAAATATAACACACACACACAC 57.061 29.630 0.00 0.00 0.00 3.82
973 1588 8.664211 TCTTAAATATAACACACACACACACA 57.336 30.769 0.00 0.00 0.00 3.72
974 1589 8.552865 TCTTAAATATAACACACACACACACAC 58.447 33.333 0.00 0.00 0.00 3.82
975 1590 6.685527 AAATATAACACACACACACACACA 57.314 33.333 0.00 0.00 0.00 3.72
976 1591 5.666969 ATATAACACACACACACACACAC 57.333 39.130 0.00 0.00 0.00 3.82
977 1592 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
978 1593 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
979 1594 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
980 1595 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
981 1596 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
982 1597 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
983 1598 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
984 1599 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
985 1600 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
986 1601 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
987 1602 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
988 1603 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
989 1604 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
990 1605 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
991 1606 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1099 2489 0.538118 CCGACGAAATCCCCACCTTA 59.462 55.000 0.00 0.00 0.00 2.69
1605 2995 2.693762 CCGCAAGTGGCACATCCTG 61.694 63.158 21.41 11.95 44.52 3.86
1824 3214 3.065787 GCCCCTCATCATGGTGGCT 62.066 63.158 6.03 0.00 37.69 4.75
2016 3406 5.352284 GGTATAGACATGAGGACACAACTG 58.648 45.833 0.00 0.00 0.00 3.16
2106 3496 6.433766 CAAGAAGAAGATGAACCTTGACAAC 58.566 40.000 0.00 0.00 34.57 3.32
2192 3582 7.282224 CAGAGTATAACTGTTCTGCTAGTCTCT 59.718 40.741 0.00 0.00 31.68 3.10
2227 3617 1.816835 TCTACTAGGTGTGTTGAGCCG 59.183 52.381 0.00 0.00 0.00 5.52
2231 3621 0.535335 TAGGTGTGTTGAGCCGGATC 59.465 55.000 14.17 14.17 0.00 3.36
2320 3711 9.051679 GCTTTTCAACAATAATAACCCTGTTTT 57.948 29.630 0.00 0.00 29.70 2.43
2332 3723 4.640771 ACCCTGTTTTCTGATAAGCTCA 57.359 40.909 0.00 0.00 0.00 4.26
2333 3724 4.985538 ACCCTGTTTTCTGATAAGCTCAA 58.014 39.130 0.00 0.00 32.14 3.02
2334 3725 5.006386 ACCCTGTTTTCTGATAAGCTCAAG 58.994 41.667 0.00 0.00 32.14 3.02
2335 3726 5.221925 ACCCTGTTTTCTGATAAGCTCAAGA 60.222 40.000 0.00 0.00 32.14 3.02
2356 3747 8.095169 TCAAGAAAGAAATACACTTACTCCCTC 58.905 37.037 0.00 0.00 0.00 4.30
2412 3867 6.560003 ATTATTGTGGATGACTGGTGAGTA 57.440 37.500 0.00 0.00 30.16 2.59
2515 3974 1.352017 TGTTGCTGATGTGAGGGATGT 59.648 47.619 0.00 0.00 0.00 3.06
2520 3979 2.036992 GCTGATGTGAGGGATGTAGGAG 59.963 54.545 0.00 0.00 0.00 3.69
2521 3980 3.303938 CTGATGTGAGGGATGTAGGAGT 58.696 50.000 0.00 0.00 0.00 3.85
2522 3981 4.474394 CTGATGTGAGGGATGTAGGAGTA 58.526 47.826 0.00 0.00 0.00 2.59
2523 3982 4.878968 TGATGTGAGGGATGTAGGAGTAA 58.121 43.478 0.00 0.00 0.00 2.24
2524 3983 4.895889 TGATGTGAGGGATGTAGGAGTAAG 59.104 45.833 0.00 0.00 0.00 2.34
2559 4018 6.098124 AGACTGGGTAGAGAAGATTTGAGATG 59.902 42.308 0.00 0.00 0.00 2.90
2576 4035 6.662865 TGAGATGAGATAAGGACTTCCATC 57.337 41.667 0.00 0.00 38.89 3.51
2631 4093 7.435068 TCAAGAAAATACACTTACTGCCTTC 57.565 36.000 0.00 0.00 0.00 3.46
2632 4094 6.995686 TCAAGAAAATACACTTACTGCCTTCA 59.004 34.615 0.00 0.00 0.00 3.02
2680 4143 4.322953 GGATGCATTTTTGTGGATGGACTT 60.323 41.667 0.00 0.00 29.73 3.01
2681 4144 4.686191 TGCATTTTTGTGGATGGACTTT 57.314 36.364 0.00 0.00 0.00 2.66
2685 4148 5.526846 GCATTTTTGTGGATGGACTTTTGAA 59.473 36.000 0.00 0.00 0.00 2.69
2691 4154 6.757897 TGTGGATGGACTTTTGAATGTATC 57.242 37.500 0.00 0.00 0.00 2.24
2710 4173 9.857656 AATGTATCTCTGATGGATAAAACATGT 57.142 29.630 0.00 0.00 0.00 3.21
2720 4206 8.119845 TGATGGATAAAACATGTTAATTCGTCG 58.880 33.333 12.39 0.00 0.00 5.12
2763 4250 3.233507 ACATTGCAATAGCCAATAGGGG 58.766 45.455 12.53 0.00 41.13 4.79
2783 4270 4.284550 ACCGCCAGGCAATGTGGT 62.285 61.111 13.30 7.24 42.76 4.16
2786 4273 2.658422 GCCAGGCAATGTGGTTGG 59.342 61.111 6.55 0.00 38.29 3.77
2838 4329 3.886505 GACTGGGTAGAGAAGACGATGAT 59.113 47.826 0.00 0.00 0.00 2.45
2843 4334 7.175293 ACTGGGTAGAGAAGACGATGATATAAC 59.825 40.741 0.00 0.00 0.00 1.89
2879 4370 6.990798 TCATTGTTCTTGATTAATGCCAACA 58.009 32.000 0.00 0.00 32.14 3.33
2890 4381 8.870160 TGATTAATGCCAACAATTACAATAGC 57.130 30.769 0.00 0.00 0.00 2.97
2921 4417 5.450818 AGGGCTGTCCTAACAAATATTGA 57.549 39.130 0.00 0.00 45.98 2.57
2995 4491 0.328450 TGGCCTGGGGAGGAATACAT 60.328 55.000 3.32 0.00 0.00 2.29
3011 4510 6.015856 AGGAATACATGAGTAAGATGAGACCG 60.016 42.308 0.00 0.00 33.13 4.79
3024 4523 3.977134 TGAGACCGTAGACTGTAGAGT 57.023 47.619 0.00 0.00 33.98 3.24
3025 4524 3.597255 TGAGACCGTAGACTGTAGAGTG 58.403 50.000 0.00 0.00 30.16 3.51
3026 4525 3.007723 TGAGACCGTAGACTGTAGAGTGT 59.992 47.826 0.00 0.00 30.16 3.55
3027 4526 4.221482 TGAGACCGTAGACTGTAGAGTGTA 59.779 45.833 0.00 0.00 30.16 2.90
3028 4527 4.502962 AGACCGTAGACTGTAGAGTGTAC 58.497 47.826 15.18 15.18 42.79 2.90
3029 4528 4.020751 AGACCGTAGACTGTAGAGTGTACA 60.021 45.833 22.18 0.00 45.24 2.90
3030 4529 4.252073 ACCGTAGACTGTAGAGTGTACAG 58.748 47.826 22.37 22.37 45.24 2.74
3046 4545 7.978975 AGAGTGTACAGAAGATTTTAGATGAGC 59.021 37.037 0.00 0.00 0.00 4.26
3060 4562 6.899393 TTAGATGAGCCAGTTTCATTGTTT 57.101 33.333 0.00 0.00 35.50 2.83
3076 4585 5.994668 TCATTGTTTTTCTTGGTTAATGCCC 59.005 36.000 0.00 0.00 0.00 5.36
3110 4619 3.649023 AGGCATCGTTATATGGTGGGTTA 59.351 43.478 0.00 0.00 0.00 2.85
3122 4631 2.916934 TGGTGGGTTATCCTAGCAAACT 59.083 45.455 5.68 0.00 46.65 2.66
3228 4741 7.161715 AGGAAAATAAATATACTGGCCTGGA 57.838 36.000 14.82 5.64 0.00 3.86
3323 4836 6.044046 TGGTAATTTCTGCATGCATGAATTC 58.956 36.000 29.46 22.98 0.00 2.17
3324 4837 6.044046 GGTAATTTCTGCATGCATGAATTCA 58.956 36.000 29.46 16.66 0.00 2.57
3340 4853 7.010490 CATGAATTCATGTGGATGCTCCATTC 61.010 42.308 31.74 7.31 46.40 2.67
3341 4854 9.814732 CATGAATTCATGTGGATGCTCCATTCC 62.815 44.444 31.74 0.00 46.40 3.01
3350 4869 1.002069 TGCTCCATTCCCATCCTTGT 58.998 50.000 0.00 0.00 0.00 3.16
3356 5790 3.332187 TCCATTCCCATCCTTGTTGTACA 59.668 43.478 0.00 0.00 0.00 2.90
3359 5793 3.260475 TCCCATCCTTGTTGTACATCG 57.740 47.619 0.00 0.00 0.00 3.84
3363 5797 4.191544 CCATCCTTGTTGTACATCGTCAT 58.808 43.478 0.00 0.00 0.00 3.06
3369 5803 6.429692 TCCTTGTTGTACATCGTCATCAAAAT 59.570 34.615 0.00 0.00 0.00 1.82
3370 5804 6.742718 CCTTGTTGTACATCGTCATCAAAATC 59.257 38.462 0.00 0.00 0.00 2.17
3409 5843 9.394767 AGTGATGCACATGATAAACAAATACTA 57.605 29.630 0.00 0.00 36.74 1.82
3465 5899 9.804977 ATTGCCTTCTTTCTAATAGATTAGCAT 57.195 29.630 4.66 0.00 39.60 3.79
3467 5901 8.654997 TGCCTTCTTTCTAATAGATTAGCATCT 58.345 33.333 4.66 0.00 42.83 2.90
3492 5926 2.239400 AGCAGGGCTTAAGGTTTTGAC 58.761 47.619 4.29 0.00 33.89 3.18
3500 5934 6.040504 AGGGCTTAAGGTTTTGACTTACAAAG 59.959 38.462 4.29 0.00 46.93 2.77
3515 5949 8.284693 TGACTTACAAAGGATAAAAGTAAACGC 58.715 33.333 0.00 0.00 30.83 4.84
3524 5958 7.937649 AGGATAAAAGTAAACGCAAGACTTTT 58.062 30.769 17.00 17.00 46.75 2.27
3530 5964 6.913873 AGTAAACGCAAGACTTTTGAGTAA 57.086 33.333 0.00 0.00 43.62 2.24
3574 8395 7.206687 AGTTTGTTGTTGTTTCTTGACTTCAA 58.793 30.769 0.00 0.00 0.00 2.69
3652 8474 1.156736 TTTGAAGACTGCGCCTTAGC 58.843 50.000 4.18 0.00 37.71 3.09
3694 8516 6.950842 TCATAGCTCAACCCTTATGATATGG 58.049 40.000 0.00 0.00 0.00 2.74
3706 8528 6.294899 CCCTTATGATATGGACTGCAATTTGG 60.295 42.308 5.99 0.00 0.00 3.28
3721 8543 6.705302 TGCAATTTGGGAACTTTGCATAATA 58.295 32.000 5.17 0.00 46.76 0.98
3738 8560 8.870160 TGCATAATAAATTTGAAGTATGCACC 57.130 30.769 22.66 5.40 45.27 5.01
3815 8638 8.547967 TTTCACTAAGGACACTTATTTAGCAG 57.452 34.615 0.00 0.00 38.44 4.24
3816 8639 7.241042 TCACTAAGGACACTTATTTAGCAGT 57.759 36.000 0.00 0.00 38.44 4.40
3823 8646 7.498443 AGGACACTTATTTAGCAGTACATACC 58.502 38.462 0.00 0.00 0.00 2.73
3824 8647 7.344871 AGGACACTTATTTAGCAGTACATACCT 59.655 37.037 0.00 0.00 0.00 3.08
3837 8660 6.402226 GCAGTACATACCTGCTGTTTAGTTTC 60.402 42.308 5.20 0.00 40.58 2.78
3846 8669 5.010012 CCTGCTGTTTAGTTTCAAACCATCT 59.990 40.000 0.00 0.00 37.56 2.90
3857 8680 3.554934 TCAAACCATCTTCAGTTGCTGT 58.445 40.909 0.00 0.00 32.61 4.40
3868 8691 8.514594 CATCTTCAGTTGCTGTTTTCCTTATAA 58.485 33.333 0.00 0.00 32.61 0.98
3869 8692 8.635765 TCTTCAGTTGCTGTTTTCCTTATAAT 57.364 30.769 0.00 0.00 32.61 1.28
3870 8693 9.733556 TCTTCAGTTGCTGTTTTCCTTATAATA 57.266 29.630 0.00 0.00 32.61 0.98
3899 8722 8.840833 TCAGAAACATAACTGCATAGTTGTAA 57.159 30.769 1.78 0.00 46.28 2.41
3900 8723 9.448438 TCAGAAACATAACTGCATAGTTGTAAT 57.552 29.630 1.78 0.00 46.28 1.89
3910 8733 7.186804 ACTGCATAGTTGTAATTAACGAATGC 58.813 34.615 18.16 18.16 45.11 3.56
3978 8801 3.715638 ATCCTCCATGCTCCATATGTG 57.284 47.619 1.24 0.00 0.00 3.21
3992 8815 4.020662 TCCATATGTGTGCACTGTGAAGTA 60.021 41.667 19.41 2.17 0.00 2.24
3996 8819 3.802866 TGTGTGCACTGTGAAGTATCAA 58.197 40.909 19.41 0.00 37.30 2.57
4000 8823 4.452114 TGTGCACTGTGAAGTATCAATGTC 59.548 41.667 19.41 0.00 37.30 3.06
4071 8895 7.461182 AATGCAAGTGTTTTAGCCTGTATTA 57.539 32.000 0.00 0.00 0.00 0.98
4127 8951 4.195225 ACCTCTTCGAGCTTCTTTAAGG 57.805 45.455 0.00 0.00 32.98 2.69
4131 8955 5.470047 TCTTCGAGCTTCTTTAAGGAGTT 57.530 39.130 1.87 0.00 32.98 3.01
4132 8956 6.350277 CCTCTTCGAGCTTCTTTAAGGAGTTA 60.350 42.308 1.87 0.00 32.98 2.24
4133 8957 6.989659 TCTTCGAGCTTCTTTAAGGAGTTAA 58.010 36.000 1.87 0.00 32.98 2.01
4656 9516 1.609072 GTTGCCTCAAAGGGTCTTGAC 59.391 52.381 0.00 0.00 35.37 3.18
5128 9988 5.004448 CAGCTCATCCATGCTTGAGATATT 58.996 41.667 20.98 5.99 41.53 1.28
5129 9989 5.473846 CAGCTCATCCATGCTTGAGATATTT 59.526 40.000 20.98 4.20 41.53 1.40
5130 9990 6.016192 CAGCTCATCCATGCTTGAGATATTTT 60.016 38.462 20.98 2.94 41.53 1.82
5131 9991 7.174426 CAGCTCATCCATGCTTGAGATATTTTA 59.826 37.037 20.98 0.00 41.53 1.52
5132 9992 7.722728 AGCTCATCCATGCTTGAGATATTTTAA 59.277 33.333 20.98 0.00 41.53 1.52
5133 9993 8.021973 GCTCATCCATGCTTGAGATATTTTAAG 58.978 37.037 20.98 0.00 41.53 1.85
5134 9994 9.281371 CTCATCCATGCTTGAGATATTTTAAGA 57.719 33.333 14.68 0.00 41.53 2.10
5136 9996 9.064706 CATCCATGCTTGAGATATTTTAAGAGT 57.935 33.333 0.22 0.00 0.00 3.24
5137 9997 8.442632 TCCATGCTTGAGATATTTTAAGAGTG 57.557 34.615 0.22 0.69 0.00 3.51
5138 9998 8.267183 TCCATGCTTGAGATATTTTAAGAGTGA 58.733 33.333 0.22 0.00 0.00 3.41
5139 9999 8.896744 CCATGCTTGAGATATTTTAAGAGTGAA 58.103 33.333 0.22 0.00 0.00 3.18
5140 10000 9.932699 CATGCTTGAGATATTTTAAGAGTGAAG 57.067 33.333 2.33 0.00 0.00 3.02
5141 10001 9.678260 ATGCTTGAGATATTTTAAGAGTGAAGT 57.322 29.630 2.33 0.00 0.00 3.01
5183 10043 3.759618 CCCTCCTTAGTCATCGTATCCTC 59.240 52.174 0.00 0.00 0.00 3.71
5223 10083 6.650807 ACATTATGTTTCAAGTGATGACGACT 59.349 34.615 0.00 0.00 37.92 4.18
5224 10084 7.173218 ACATTATGTTTCAAGTGATGACGACTT 59.827 33.333 0.00 0.00 37.92 3.01
5271 10131 7.514747 GCATACGAAGCTGTACTGTTGTAATAC 60.515 40.741 1.46 0.00 0.00 1.89
5272 10132 6.022163 ACGAAGCTGTACTGTTGTAATACT 57.978 37.500 1.46 0.00 0.00 2.12
5273 10133 7.149569 ACGAAGCTGTACTGTTGTAATACTA 57.850 36.000 1.46 0.00 0.00 1.82
5274 10134 7.769220 ACGAAGCTGTACTGTTGTAATACTAT 58.231 34.615 1.46 0.00 0.00 2.12
5275 10135 7.701078 ACGAAGCTGTACTGTTGTAATACTATG 59.299 37.037 1.46 0.00 0.00 2.23
5276 10136 7.701078 CGAAGCTGTACTGTTGTAATACTATGT 59.299 37.037 1.46 0.00 0.00 2.29
5426 10286 6.649141 TGAAGCTGTAATAGTTATATTGGCCG 59.351 38.462 0.00 0.00 33.58 6.13
5474 10337 2.357154 GGCATCTTTTAGGGAGCTTGGA 60.357 50.000 0.00 0.00 0.00 3.53
5571 10434 1.679139 TGACTTGTTGCTGAACCCTG 58.321 50.000 0.00 0.00 0.00 4.45
5591 10454 4.515944 CCTGACACTTACCTCCTAGATACG 59.484 50.000 0.00 0.00 0.00 3.06
5599 10462 7.980099 CACTTACCTCCTAGATACGTCAATTTT 59.020 37.037 0.00 0.00 0.00 1.82
5700 10573 7.776107 AGGTCATCATCATCATAATACTACGG 58.224 38.462 0.00 0.00 0.00 4.02
5718 10591 7.344095 ACTACGGCTAGAAGCTTTTAAGATA 57.656 36.000 0.00 0.00 41.99 1.98
5736 10609 8.555896 TTAAGATAACCACCATGATACTACCA 57.444 34.615 0.00 0.00 0.00 3.25
5745 10618 4.788617 ACCATGATACTACCACCTCCTTTT 59.211 41.667 0.00 0.00 0.00 2.27
5762 10635 4.274950 TCCTTTTCAAAAGGTGATGACGAC 59.725 41.667 25.36 0.00 38.55 4.34
5765 10638 2.400399 TCAAAAGGTGATGACGACGAC 58.600 47.619 0.00 0.00 0.00 4.34
5797 10672 6.014647 ACTACTGTTACAACCACCATCTCTA 58.985 40.000 0.00 0.00 0.00 2.43
5826 10701 9.145442 GATTAGAGTACCCTAAGAAACCTACAT 57.855 37.037 3.12 0.00 32.75 2.29
5833 10708 9.239551 GTACCCTAAGAAACCTACATTTTGAAT 57.760 33.333 0.00 0.00 0.00 2.57
5880 10763 7.204737 GCTAAAGCACATTAATTTTACGTGG 57.795 36.000 0.00 0.00 41.59 4.94
5881 10764 7.024768 GCTAAAGCACATTAATTTTACGTGGA 58.975 34.615 0.00 0.00 41.59 4.02
5882 10765 7.218204 GCTAAAGCACATTAATTTTACGTGGAG 59.782 37.037 0.00 0.00 41.59 3.86
5883 10766 6.811253 AAGCACATTAATTTTACGTGGAGA 57.189 33.333 0.00 0.00 0.00 3.71
5884 10767 7.391148 AAGCACATTAATTTTACGTGGAGAT 57.609 32.000 0.00 0.00 0.00 2.75
5885 10768 7.391148 AGCACATTAATTTTACGTGGAGATT 57.609 32.000 0.00 0.00 0.00 2.40
5886 10769 7.472543 AGCACATTAATTTTACGTGGAGATTC 58.527 34.615 0.00 0.00 0.00 2.52
5887 10770 7.336931 AGCACATTAATTTTACGTGGAGATTCT 59.663 33.333 0.00 0.00 0.00 2.40
5888 10771 7.968405 GCACATTAATTTTACGTGGAGATTCTT 59.032 33.333 0.00 0.00 0.00 2.52
5889 10772 9.277565 CACATTAATTTTACGTGGAGATTCTTG 57.722 33.333 0.00 0.00 0.00 3.02
5890 10773 9.010029 ACATTAATTTTACGTGGAGATTCTTGT 57.990 29.630 0.00 0.00 0.00 3.16
5891 10774 9.490663 CATTAATTTTACGTGGAGATTCTTGTC 57.509 33.333 0.00 0.00 0.00 3.18
5892 10775 5.779806 ATTTTACGTGGAGATTCTTGTCG 57.220 39.130 0.00 0.00 0.00 4.35
5893 10776 4.508461 TTTACGTGGAGATTCTTGTCGA 57.492 40.909 0.00 0.00 0.00 4.20
5894 10777 4.713824 TTACGTGGAGATTCTTGTCGAT 57.286 40.909 0.00 0.00 0.00 3.59
5895 10778 5.823209 TTACGTGGAGATTCTTGTCGATA 57.177 39.130 0.00 0.00 0.00 2.92
5896 10779 4.920640 ACGTGGAGATTCTTGTCGATAT 57.079 40.909 10.55 0.00 0.00 1.63
5897 10780 5.263968 ACGTGGAGATTCTTGTCGATATT 57.736 39.130 10.55 0.00 0.00 1.28
5898 10781 5.661458 ACGTGGAGATTCTTGTCGATATTT 58.339 37.500 10.55 0.00 0.00 1.40
5899 10782 6.106673 ACGTGGAGATTCTTGTCGATATTTT 58.893 36.000 10.55 0.00 0.00 1.82
5900 10783 6.594159 ACGTGGAGATTCTTGTCGATATTTTT 59.406 34.615 10.55 0.00 0.00 1.94
5901 10784 7.762615 ACGTGGAGATTCTTGTCGATATTTTTA 59.237 33.333 10.55 0.00 0.00 1.52
5902 10785 8.600625 CGTGGAGATTCTTGTCGATATTTTTAA 58.399 33.333 0.00 0.00 0.00 1.52
5938 10821 8.031864 ACAGTACATGTGCATAGATAGATAAGC 58.968 37.037 16.62 0.00 41.91 3.09
5939 10822 8.031277 CAGTACATGTGCATAGATAGATAAGCA 58.969 37.037 16.62 0.00 0.00 3.91
5940 10823 8.031864 AGTACATGTGCATAGATAGATAAGCAC 58.968 37.037 16.62 8.27 45.79 4.40
5953 10836 9.934784 AGATAGATAAGCACATATACTCATCCT 57.065 33.333 0.00 0.00 0.00 3.24
5957 10840 9.706529 AGATAAGCACATATACTCATCCTATGA 57.293 33.333 0.00 0.00 37.76 2.15
5960 10843 7.544804 AGCACATATACTCATCCTATGAACA 57.455 36.000 0.00 0.00 39.11 3.18
5961 10844 7.382110 AGCACATATACTCATCCTATGAACAC 58.618 38.462 0.00 0.00 39.11 3.32
5962 10845 6.309009 GCACATATACTCATCCTATGAACACG 59.691 42.308 0.00 0.00 39.11 4.49
5963 10846 6.309009 CACATATACTCATCCTATGAACACGC 59.691 42.308 0.00 0.00 39.11 5.34
5964 10847 4.937201 ATACTCATCCTATGAACACGCA 57.063 40.909 0.00 0.00 39.11 5.24
5965 10848 2.893637 ACTCATCCTATGAACACGCAC 58.106 47.619 0.00 0.00 39.11 5.34
5966 10849 2.233676 ACTCATCCTATGAACACGCACA 59.766 45.455 0.00 0.00 39.11 4.57
5967 10850 3.118629 ACTCATCCTATGAACACGCACAT 60.119 43.478 0.00 0.00 39.11 3.21
5968 10851 3.457234 TCATCCTATGAACACGCACATC 58.543 45.455 0.00 0.00 36.11 3.06
5969 10852 3.132824 TCATCCTATGAACACGCACATCT 59.867 43.478 0.00 0.00 36.11 2.90
5970 10853 3.610040 TCCTATGAACACGCACATCTT 57.390 42.857 0.00 0.00 0.00 2.40
5971 10854 4.729227 TCCTATGAACACGCACATCTTA 57.271 40.909 0.00 0.00 0.00 2.10
5972 10855 4.430007 TCCTATGAACACGCACATCTTAC 58.570 43.478 0.00 0.00 0.00 2.34
5973 10856 3.555956 CCTATGAACACGCACATCTTACC 59.444 47.826 0.00 0.00 0.00 2.85
5974 10857 1.803334 TGAACACGCACATCTTACCC 58.197 50.000 0.00 0.00 0.00 3.69
5975 10858 1.070914 TGAACACGCACATCTTACCCA 59.929 47.619 0.00 0.00 0.00 4.51
5976 10859 2.147958 GAACACGCACATCTTACCCAA 58.852 47.619 0.00 0.00 0.00 4.12
5977 10860 2.264005 ACACGCACATCTTACCCAAA 57.736 45.000 0.00 0.00 0.00 3.28
5978 10861 2.790433 ACACGCACATCTTACCCAAAT 58.210 42.857 0.00 0.00 0.00 2.32
5979 10862 2.487762 ACACGCACATCTTACCCAAATG 59.512 45.455 0.00 0.00 0.00 2.32
5980 10863 2.746904 CACGCACATCTTACCCAAATGA 59.253 45.455 0.00 0.00 0.00 2.57
5981 10864 3.009723 ACGCACATCTTACCCAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
5982 10865 2.223340 CGCACATCTTACCCAAATGAGC 60.223 50.000 0.00 0.00 34.81 4.26
5983 10866 2.754552 GCACATCTTACCCAAATGAGCA 59.245 45.455 0.00 0.00 37.09 4.26
5984 10867 3.428045 GCACATCTTACCCAAATGAGCAC 60.428 47.826 0.00 0.00 37.09 4.40
5985 10868 3.129287 CACATCTTACCCAAATGAGCACC 59.871 47.826 0.00 0.00 0.00 5.01
5986 10869 3.010584 ACATCTTACCCAAATGAGCACCT 59.989 43.478 0.00 0.00 0.00 4.00
5987 10870 3.350219 TCTTACCCAAATGAGCACCTC 57.650 47.619 0.00 0.00 0.00 3.85
5988 10871 2.912956 TCTTACCCAAATGAGCACCTCT 59.087 45.455 0.00 0.00 0.00 3.69
5989 10872 2.787473 TACCCAAATGAGCACCTCTG 57.213 50.000 0.00 0.00 0.00 3.35
5990 10873 1.067295 ACCCAAATGAGCACCTCTGA 58.933 50.000 0.00 0.00 0.00 3.27
5991 10874 1.004044 ACCCAAATGAGCACCTCTGAG 59.996 52.381 0.00 0.00 0.00 3.35
5992 10875 1.280133 CCCAAATGAGCACCTCTGAGA 59.720 52.381 6.17 0.00 0.00 3.27
5993 10876 2.630158 CCAAATGAGCACCTCTGAGAG 58.370 52.381 6.17 1.57 0.00 3.20
5994 10877 2.235650 CCAAATGAGCACCTCTGAGAGA 59.764 50.000 11.82 0.00 0.00 3.10
5995 10878 3.260740 CAAATGAGCACCTCTGAGAGAC 58.739 50.000 11.82 0.00 0.00 3.36
5996 10879 2.530460 ATGAGCACCTCTGAGAGACT 57.470 50.000 11.82 5.18 0.00 3.24
5997 10880 3.660970 ATGAGCACCTCTGAGAGACTA 57.339 47.619 11.82 0.00 0.00 2.59
5998 10881 3.441500 TGAGCACCTCTGAGAGACTAA 57.558 47.619 11.82 0.00 0.00 2.24
5999 10882 3.767711 TGAGCACCTCTGAGAGACTAAA 58.232 45.455 11.82 0.00 0.00 1.85
6000 10883 3.508012 TGAGCACCTCTGAGAGACTAAAC 59.492 47.826 11.82 0.00 0.00 2.01
6001 10884 2.829120 AGCACCTCTGAGAGACTAAACC 59.171 50.000 11.82 0.00 0.00 3.27
6002 10885 2.416162 GCACCTCTGAGAGACTAAACCG 60.416 54.545 11.82 0.00 0.00 4.44
6003 10886 3.082548 CACCTCTGAGAGACTAAACCGA 58.917 50.000 11.82 0.00 0.00 4.69
6004 10887 3.083293 ACCTCTGAGAGACTAAACCGAC 58.917 50.000 11.82 0.00 0.00 4.79
6005 10888 2.096174 CCTCTGAGAGACTAAACCGACG 59.904 54.545 11.82 0.00 0.00 5.12
6006 10889 1.467734 TCTGAGAGACTAAACCGACGC 59.532 52.381 0.00 0.00 0.00 5.19
6007 10890 1.199327 CTGAGAGACTAAACCGACGCA 59.801 52.381 0.00 0.00 0.00 5.24
6008 10891 1.816835 TGAGAGACTAAACCGACGCAT 59.183 47.619 0.00 0.00 0.00 4.73
6009 10892 2.159421 TGAGAGACTAAACCGACGCATC 60.159 50.000 0.00 0.00 0.00 3.91
6010 10893 1.816835 AGAGACTAAACCGACGCATCA 59.183 47.619 0.00 0.00 0.00 3.07
6011 10894 2.427453 AGAGACTAAACCGACGCATCAT 59.573 45.455 0.00 0.00 0.00 2.45
6012 10895 2.789893 GAGACTAAACCGACGCATCATC 59.210 50.000 0.00 0.00 0.00 2.92
6013 10896 2.427453 AGACTAAACCGACGCATCATCT 59.573 45.455 0.00 0.00 0.00 2.90
6014 10897 3.119101 AGACTAAACCGACGCATCATCTT 60.119 43.478 0.00 0.00 0.00 2.40
6015 10898 2.930040 ACTAAACCGACGCATCATCTTG 59.070 45.455 0.00 0.00 0.00 3.02
6016 10899 2.093306 AAACCGACGCATCATCTTGA 57.907 45.000 0.00 0.00 0.00 3.02
6017 10900 1.645034 AACCGACGCATCATCTTGAG 58.355 50.000 0.00 0.00 0.00 3.02
6018 10901 0.817654 ACCGACGCATCATCTTGAGA 59.182 50.000 0.00 0.00 0.00 3.27
6019 10902 1.410517 ACCGACGCATCATCTTGAGAT 59.589 47.619 0.00 0.00 34.56 2.75
6020 10903 2.159043 ACCGACGCATCATCTTGAGATT 60.159 45.455 0.00 0.00 31.21 2.40
6021 10904 2.220363 CCGACGCATCATCTTGAGATTG 59.780 50.000 0.00 0.00 31.21 2.67
6022 10905 3.118542 CGACGCATCATCTTGAGATTGA 58.881 45.455 0.00 0.00 31.21 2.57
6023 10906 3.739810 CGACGCATCATCTTGAGATTGAT 59.260 43.478 0.00 0.00 31.21 2.57
6024 10907 4.376109 CGACGCATCATCTTGAGATTGATG 60.376 45.833 18.65 18.65 39.82 3.07
6025 10908 3.813724 ACGCATCATCTTGAGATTGATGG 59.186 43.478 21.38 16.94 40.13 3.51
6026 10909 4.062991 CGCATCATCTTGAGATTGATGGA 58.937 43.478 21.38 7.51 40.13 3.41
6027 10910 4.152580 CGCATCATCTTGAGATTGATGGAG 59.847 45.833 21.38 10.30 40.13 3.86
6028 10911 5.064558 GCATCATCTTGAGATTGATGGAGT 58.935 41.667 21.38 0.45 40.13 3.85
6029 10912 5.531659 GCATCATCTTGAGATTGATGGAGTT 59.468 40.000 21.38 0.00 40.13 3.01
6030 10913 6.513556 GCATCATCTTGAGATTGATGGAGTTG 60.514 42.308 21.38 6.99 40.13 3.16
6031 10914 5.434408 TCATCTTGAGATTGATGGAGTTGG 58.566 41.667 0.00 0.00 40.13 3.77
6032 10915 3.614092 TCTTGAGATTGATGGAGTTGGC 58.386 45.455 0.00 0.00 0.00 4.52
6033 10916 3.009363 TCTTGAGATTGATGGAGTTGGCA 59.991 43.478 0.00 0.00 0.00 4.92
6034 10917 2.715046 TGAGATTGATGGAGTTGGCAC 58.285 47.619 0.00 0.00 0.00 5.01
6035 10918 2.040145 TGAGATTGATGGAGTTGGCACA 59.960 45.455 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.745968 ACTTTGCAAAAAGGTCCCTCA 58.254 42.857 13.84 0.00 34.18 3.86
120 121 5.538877 ACTACAATAGAATCTCCCCCTGAA 58.461 41.667 0.00 0.00 0.00 3.02
127 128 5.530712 GGGAACGACTACAATAGAATCTCC 58.469 45.833 0.00 0.00 0.00 3.71
168 169 5.003804 GGTGAGTTCTATGCAGAGGAAAAA 58.996 41.667 8.78 0.00 30.73 1.94
209 210 4.382345 AGGCTTATGCATTTCTTGAAGC 57.618 40.909 17.51 17.51 41.91 3.86
216 217 3.412386 ACCGGATAGGCTTATGCATTTC 58.588 45.455 9.46 0.36 46.52 2.17
270 271 7.671398 ACAAAACTCTCTACCATGGATTTGAAT 59.329 33.333 21.47 0.00 0.00 2.57
334 335 1.072505 GAGGGCCTTGGACGTTTCA 59.927 57.895 7.89 0.00 0.00 2.69
371 372 6.276832 ACTGTTTTCATGATTGGGAGATTG 57.723 37.500 0.00 0.00 0.00 2.67
392 393 2.675889 CGTTGGGGCGATAACTTGTACT 60.676 50.000 0.00 0.00 0.00 2.73
424 432 1.074084 TGGGATTTGGCTCAAACGGTA 59.926 47.619 2.96 0.00 36.13 4.02
479 487 2.299297 ACCTCGAACGATTATGGGGATC 59.701 50.000 0.00 0.00 0.00 3.36
492 500 2.838386 TGCGAGTGTATACCTCGAAC 57.162 50.000 30.97 20.89 42.46 3.95
501 509 1.541233 GGCTGGCTATTGCGAGTGTAT 60.541 52.381 12.19 0.00 45.10 2.29
542 552 4.647564 TCTTTGAGAAAGAGGAGCCATT 57.352 40.909 0.00 0.00 42.31 3.16
555 565 6.549736 TGACCTGGATAATATCGTCTTTGAGA 59.450 38.462 0.00 0.00 0.00 3.27
580 590 1.846439 CAGTTGGGGATCACTGGGTAT 59.154 52.381 0.00 0.00 0.00 2.73
586 596 2.038863 TACACCAGTTGGGGATCACT 57.961 50.000 7.56 0.00 42.67 3.41
654 666 1.494721 GAAGGATCCTACCCATGGCAA 59.505 52.381 16.55 0.00 0.00 4.52
663 675 5.602978 TGGGATGAAACTAGAAGGATCCTAC 59.397 44.000 16.55 0.51 31.70 3.18
676 688 5.077564 GTTTCTAGGGTTTGGGATGAAACT 58.922 41.667 0.00 0.00 38.85 2.66
679 691 4.263771 GGAGTTTCTAGGGTTTGGGATGAA 60.264 45.833 0.00 0.00 0.00 2.57
683 695 2.374170 GTGGAGTTTCTAGGGTTTGGGA 59.626 50.000 0.00 0.00 0.00 4.37
706 718 4.389576 GCGTTTGGGTCTGCTGCG 62.390 66.667 0.00 0.00 0.00 5.18
777 1106 0.905357 CTTCCTCCCCGTTCTGTGAT 59.095 55.000 0.00 0.00 0.00 3.06
780 1109 1.558233 CTACTTCCTCCCCGTTCTGT 58.442 55.000 0.00 0.00 0.00 3.41
829 1158 4.225267 AGGGTTTCATCCTCTCGTTGTAAT 59.775 41.667 0.00 0.00 0.00 1.89
830 1159 3.581332 AGGGTTTCATCCTCTCGTTGTAA 59.419 43.478 0.00 0.00 0.00 2.41
831 1160 3.170717 AGGGTTTCATCCTCTCGTTGTA 58.829 45.455 0.00 0.00 0.00 2.41
848 1177 2.573915 CCTTTTCCTCTCTTGCTAGGGT 59.426 50.000 0.00 0.00 33.40 4.34
856 1185 6.455690 AAGTCCATTACCTTTTCCTCTCTT 57.544 37.500 0.00 0.00 0.00 2.85
881 1227 7.967854 CCAATTATGCGAAAACACATCTTAAGA 59.032 33.333 7.82 7.82 0.00 2.10
957 1304 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
958 1305 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
968 1583 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
972 1587 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
973 1588 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
974 1589 2.315011 GTTTGTGTGTGTGTGTGTGTG 58.685 47.619 0.00 0.00 0.00 3.82
975 1590 1.268352 GGTTTGTGTGTGTGTGTGTGT 59.732 47.619 0.00 0.00 0.00 3.72
976 1591 1.539388 AGGTTTGTGTGTGTGTGTGTG 59.461 47.619 0.00 0.00 0.00 3.82
977 1592 1.904287 AGGTTTGTGTGTGTGTGTGT 58.096 45.000 0.00 0.00 0.00 3.72
978 1593 4.427096 TTAAGGTTTGTGTGTGTGTGTG 57.573 40.909 0.00 0.00 0.00 3.82
979 1594 5.406649 CATTTAAGGTTTGTGTGTGTGTGT 58.593 37.500 0.00 0.00 0.00 3.72
980 1595 4.267452 GCATTTAAGGTTTGTGTGTGTGTG 59.733 41.667 0.00 0.00 0.00 3.82
981 1596 4.081972 TGCATTTAAGGTTTGTGTGTGTGT 60.082 37.500 0.00 0.00 0.00 3.72
982 1597 4.267452 GTGCATTTAAGGTTTGTGTGTGTG 59.733 41.667 0.00 0.00 0.00 3.82
983 1598 4.429108 GTGCATTTAAGGTTTGTGTGTGT 58.571 39.130 0.00 0.00 0.00 3.72
984 1599 3.801594 GGTGCATTTAAGGTTTGTGTGTG 59.198 43.478 0.00 0.00 0.00 3.82
985 1600 3.704061 AGGTGCATTTAAGGTTTGTGTGT 59.296 39.130 0.00 0.00 0.00 3.72
986 1601 4.050553 CAGGTGCATTTAAGGTTTGTGTG 58.949 43.478 0.00 0.00 0.00 3.82
987 1602 3.957497 TCAGGTGCATTTAAGGTTTGTGT 59.043 39.130 0.00 0.00 0.00 3.72
988 1603 4.298332 GTCAGGTGCATTTAAGGTTTGTG 58.702 43.478 0.00 0.00 0.00 3.33
989 1604 3.004315 CGTCAGGTGCATTTAAGGTTTGT 59.996 43.478 0.00 0.00 0.00 2.83
990 1605 3.564511 CGTCAGGTGCATTTAAGGTTTG 58.435 45.455 0.00 0.00 0.00 2.93
991 1606 2.556622 CCGTCAGGTGCATTTAAGGTTT 59.443 45.455 0.00 0.00 0.00 3.27
1099 2489 0.973496 GTTCGGAGGAAGGAGAGGCT 60.973 60.000 0.00 0.00 31.49 4.58
1356 2746 1.748122 GGACGTGACGAGGAGGCTA 60.748 63.158 13.70 0.00 0.00 3.93
1605 2995 0.664224 GGATCTCGTCTCCTTCGACC 59.336 60.000 0.00 0.00 33.71 4.79
1752 3142 2.320587 GGCGATGCCGATCATGTCC 61.321 63.158 0.00 0.00 39.62 4.02
1824 3214 3.192001 GCATCAACATTTCCTCTTGCAGA 59.808 43.478 0.00 0.00 0.00 4.26
1836 3226 3.131577 CAGGCACAATAGGCATCAACATT 59.868 43.478 0.00 0.00 36.37 2.71
2016 3406 1.026718 CGCCCTTCTTCACCACATCC 61.027 60.000 0.00 0.00 0.00 3.51
2061 3451 0.873743 CGAGAAGATCCTTGAGCCGC 60.874 60.000 0.00 0.00 0.00 6.53
2106 3496 5.105228 ACAAAAATCCAATGGATACCTGCAG 60.105 40.000 16.10 6.78 42.27 4.41
2152 3542 9.307121 CAGTTATACTCTGTTATCTGTCAAAGG 57.693 37.037 0.00 0.00 0.00 3.11
2213 3603 1.296715 GATCCGGCTCAACACACCT 59.703 57.895 0.00 0.00 0.00 4.00
2214 3604 0.392998 ATGATCCGGCTCAACACACC 60.393 55.000 12.76 0.00 0.00 4.16
2218 3608 1.278985 ACTTCATGATCCGGCTCAACA 59.721 47.619 12.76 0.00 0.00 3.33
2231 3621 8.015087 TCGCATAGTTTTAGTTCAAACTTCATG 58.985 33.333 4.25 4.89 43.17 3.07
2252 3642 1.971481 TAGCAATTCAGCCATCGCAT 58.029 45.000 0.00 0.00 37.52 4.73
2255 3645 5.868043 TCATATTAGCAATTCAGCCATCG 57.132 39.130 0.00 0.00 34.23 3.84
2256 3646 6.585322 GCTTTCATATTAGCAATTCAGCCATC 59.415 38.462 0.00 0.00 37.35 3.51
2320 3711 9.155975 GTGTATTTCTTTCTTGAGCTTATCAGA 57.844 33.333 0.00 0.00 39.68 3.27
2322 3713 9.507329 AAGTGTATTTCTTTCTTGAGCTTATCA 57.493 29.630 0.00 0.00 35.62 2.15
2332 3723 8.097662 CAGAGGGAGTAAGTGTATTTCTTTCTT 58.902 37.037 0.00 0.00 0.00 2.52
2333 3724 7.235812 ACAGAGGGAGTAAGTGTATTTCTTTCT 59.764 37.037 0.00 0.00 0.00 2.52
2334 3725 7.387643 ACAGAGGGAGTAAGTGTATTTCTTTC 58.612 38.462 0.00 0.00 0.00 2.62
2335 3726 7.317722 ACAGAGGGAGTAAGTGTATTTCTTT 57.682 36.000 0.00 0.00 0.00 2.52
2393 3847 6.560003 AATATACTCACCAGTCATCCACAA 57.440 37.500 0.00 0.00 33.62 3.33
2412 3867 8.795842 TTACGTGTTTTACCCATCAGAAATAT 57.204 30.769 0.00 0.00 0.00 1.28
2479 3934 4.023450 CAGCAACATTGTCTTGTGATCACT 60.023 41.667 25.55 1.39 0.00 3.41
2515 3974 6.183361 CCAGTCTAGTCTCATCCTTACTCCTA 60.183 46.154 0.00 0.00 0.00 2.94
2520 3979 4.538738 ACCCAGTCTAGTCTCATCCTTAC 58.461 47.826 0.00 0.00 0.00 2.34
2521 3980 4.883021 ACCCAGTCTAGTCTCATCCTTA 57.117 45.455 0.00 0.00 0.00 2.69
2522 3981 3.767309 ACCCAGTCTAGTCTCATCCTT 57.233 47.619 0.00 0.00 0.00 3.36
2523 3982 4.048600 TCTACCCAGTCTAGTCTCATCCT 58.951 47.826 0.00 0.00 0.00 3.24
2524 3983 4.103469 TCTCTACCCAGTCTAGTCTCATCC 59.897 50.000 0.00 0.00 0.00 3.51
2559 4018 5.263968 TGAACGATGGAAGTCCTTATCTC 57.736 43.478 0.00 0.00 36.82 2.75
2576 4035 4.811557 AGAAAACAGGTCTCTTCTTGAACG 59.188 41.667 0.00 0.00 0.00 3.95
2681 4144 9.904198 TGTTTTATCCATCAGAGATACATTCAA 57.096 29.630 0.00 0.00 0.00 2.69
2685 4148 9.857656 AACATGTTTTATCCATCAGAGATACAT 57.142 29.630 4.92 0.00 0.00 2.29
2691 4154 9.655769 CGAATTAACATGTTTTATCCATCAGAG 57.344 33.333 17.78 0.00 0.00 3.35
2710 4173 6.902224 ACATCACATTCATCGACGAATTAA 57.098 33.333 3.55 0.00 33.27 1.40
2763 4250 2.672996 ACATTGCCTGGCGGTCAC 60.673 61.111 14.98 0.00 0.00 3.67
2774 4261 0.314935 CCTCACACCAACCACATTGC 59.685 55.000 0.00 0.00 36.93 3.56
2783 4270 1.697432 CCTCTACAACCCTCACACCAA 59.303 52.381 0.00 0.00 0.00 3.67
2786 4273 2.897969 TCTTCCTCTACAACCCTCACAC 59.102 50.000 0.00 0.00 0.00 3.82
2843 4334 7.912056 TCAAGAACAATGAAGTCCTTATCTG 57.088 36.000 0.00 0.00 0.00 2.90
2850 4341 6.753744 GGCATTAATCAAGAACAATGAAGTCC 59.246 38.462 9.75 1.19 31.44 3.85
2879 4370 4.821805 CCCTTGACGATGGCTATTGTAATT 59.178 41.667 2.41 0.00 30.90 1.40
2890 4381 1.450312 GGACAGCCCTTGACGATGG 60.450 63.158 0.00 0.00 0.00 3.51
2905 4401 7.987458 TCAGATCTGGTCAATATTTGTTAGGAC 59.013 37.037 22.42 0.00 0.00 3.85
2921 4417 8.546083 ACATTTAGACTAATCTCAGATCTGGT 57.454 34.615 22.42 11.04 36.29 4.00
2995 4491 4.876679 CAGTCTACGGTCTCATCTTACTCA 59.123 45.833 0.00 0.00 0.00 3.41
3011 4510 7.852971 ATCTTCTGTACACTCTACAGTCTAC 57.147 40.000 7.25 0.00 43.84 2.59
3024 4523 6.946340 TGGCTCATCTAAAATCTTCTGTACA 58.054 36.000 0.00 0.00 0.00 2.90
3025 4524 7.044798 ACTGGCTCATCTAAAATCTTCTGTAC 58.955 38.462 0.00 0.00 0.00 2.90
3026 4525 7.187824 ACTGGCTCATCTAAAATCTTCTGTA 57.812 36.000 0.00 0.00 0.00 2.74
3027 4526 6.059787 ACTGGCTCATCTAAAATCTTCTGT 57.940 37.500 0.00 0.00 0.00 3.41
3028 4527 6.998968 AACTGGCTCATCTAAAATCTTCTG 57.001 37.500 0.00 0.00 0.00 3.02
3029 4528 7.170965 TGAAACTGGCTCATCTAAAATCTTCT 58.829 34.615 0.00 0.00 0.00 2.85
3030 4529 7.383102 TGAAACTGGCTCATCTAAAATCTTC 57.617 36.000 0.00 0.00 0.00 2.87
3046 4545 6.983474 AACCAAGAAAAACAATGAAACTGG 57.017 33.333 0.00 0.00 0.00 4.00
3060 4562 5.559148 AATTGTGGGCATTAACCAAGAAA 57.441 34.783 0.00 0.00 40.24 2.52
3076 4585 9.759259 CATATAACGATGCCTATTGTAATTGTG 57.241 33.333 0.00 0.00 30.55 3.33
3110 4619 5.310594 TGATATGGCCTAAGTTTGCTAGGAT 59.689 40.000 3.32 0.00 32.87 3.24
3202 4715 8.900802 TCCAGGCCAGTATATTTATTTTCCTAT 58.099 33.333 5.01 0.00 0.00 2.57
3217 4730 1.159905 TGGTTCCTCCAGGCCAGTA 59.840 57.895 5.01 0.00 41.93 2.74
3293 4806 4.949238 TGCATGCAGAAATTACCATACACT 59.051 37.500 18.46 0.00 0.00 3.55
3340 4853 2.936498 GACGATGTACAACAAGGATGGG 59.064 50.000 0.00 0.00 0.00 4.00
3341 4854 3.595173 TGACGATGTACAACAAGGATGG 58.405 45.455 0.00 0.00 0.00 3.51
3347 4860 7.041440 AGTGATTTTGATGACGATGTACAACAA 60.041 33.333 0.00 0.00 0.00 2.83
3350 4869 7.041440 ACAAGTGATTTTGATGACGATGTACAA 60.041 33.333 0.00 0.00 0.00 2.41
3356 5790 9.161629 TGTATAACAAGTGATTTTGATGACGAT 57.838 29.630 0.00 0.00 0.00 3.73
3423 5857 7.593825 AGAAGGCAATGTTACTATTGTCAAAC 58.406 34.615 12.09 5.63 43.34 2.93
3428 5862 9.515226 TTAGAAAGAAGGCAATGTTACTATTGT 57.485 29.630 0.00 0.00 39.62 2.71
3441 5875 8.654997 AGATGCTAATCTATTAGAAAGAAGGCA 58.345 33.333 12.82 8.91 41.57 4.75
3492 5926 9.113876 CTTGCGTTTACTTTTATCCTTTGTAAG 57.886 33.333 0.00 0.00 0.00 2.34
3500 5934 7.858879 TCAAAAGTCTTGCGTTTACTTTTATCC 59.141 33.333 14.65 0.00 46.39 2.59
3507 5941 6.913873 TTACTCAAAAGTCTTGCGTTTACT 57.086 33.333 0.00 0.00 36.92 2.24
3544 5978 7.595130 AGTCAAGAAACAACAACAAACTCTTTC 59.405 33.333 0.00 0.00 0.00 2.62
3549 5983 6.744112 TGAAGTCAAGAAACAACAACAAACT 58.256 32.000 0.00 0.00 0.00 2.66
3550 5984 7.401484 TTGAAGTCAAGAAACAACAACAAAC 57.599 32.000 0.00 0.00 0.00 2.93
3591 8413 6.266323 ACATATAACTGCAGTGTAGAAGTCG 58.734 40.000 22.49 5.76 0.00 4.18
3652 8474 9.823098 GAGCTATGAAATTATAGATTGTTGCTG 57.177 33.333 0.00 0.00 33.42 4.41
3694 8516 2.802247 GCAAAGTTCCCAAATTGCAGTC 59.198 45.455 4.60 0.00 45.61 3.51
3721 8543 3.119495 GGAGCGGTGCATACTTCAAATTT 60.119 43.478 0.00 0.00 0.00 1.82
3727 8549 1.331756 CATTGGAGCGGTGCATACTTC 59.668 52.381 10.32 0.00 0.00 3.01
3738 8560 7.664082 ATGTATCTTATTCTTCATTGGAGCG 57.336 36.000 0.00 0.00 0.00 5.03
3788 8611 8.946085 TGCTAAATAAGTGTCCTTAGTGAAATG 58.054 33.333 0.00 0.00 36.63 2.32
3789 8612 9.167311 CTGCTAAATAAGTGTCCTTAGTGAAAT 57.833 33.333 0.00 0.00 36.63 2.17
3800 8623 8.354011 CAGGTATGTACTGCTAAATAAGTGTC 57.646 38.462 0.00 0.00 0.00 3.67
3815 8638 7.429636 TTGAAACTAAACAGCAGGTATGTAC 57.570 36.000 0.00 0.00 0.00 2.90
3816 8639 7.040961 GGTTTGAAACTAAACAGCAGGTATGTA 60.041 37.037 8.09 0.00 41.23 2.29
3823 8646 6.076981 AGATGGTTTGAAACTAAACAGCAG 57.923 37.500 8.09 0.00 41.23 4.24
3824 8647 6.096141 TGAAGATGGTTTGAAACTAAACAGCA 59.904 34.615 8.09 0.00 41.23 4.41
3837 8660 3.996150 ACAGCAACTGAAGATGGTTTG 57.004 42.857 0.78 0.00 35.18 2.93
3871 8694 9.448438 ACAACTATGCAGTTATGTTTCTGATAA 57.552 29.630 0.00 0.00 43.30 1.75
3873 8696 7.928307 ACAACTATGCAGTTATGTTTCTGAT 57.072 32.000 0.00 0.00 43.30 2.90
3874 8697 8.840833 TTACAACTATGCAGTTATGTTTCTGA 57.159 30.769 0.00 0.00 43.30 3.27
3879 8702 9.982291 CGTTAATTACAACTATGCAGTTATGTT 57.018 29.630 0.00 0.00 43.30 2.71
3880 8703 9.373603 TCGTTAATTACAACTATGCAGTTATGT 57.626 29.630 0.00 0.00 43.30 2.29
3884 8707 7.696453 GCATTCGTTAATTACAACTATGCAGTT 59.304 33.333 15.75 0.00 46.15 3.16
3885 8708 7.065803 AGCATTCGTTAATTACAACTATGCAGT 59.934 33.333 19.37 0.00 41.55 4.40
3898 8721 6.857964 CACTCAACTTTCAGCATTCGTTAATT 59.142 34.615 0.00 0.00 0.00 1.40
3899 8722 6.373779 CACTCAACTTTCAGCATTCGTTAAT 58.626 36.000 0.00 0.00 0.00 1.40
3900 8723 5.277779 CCACTCAACTTTCAGCATTCGTTAA 60.278 40.000 0.00 0.00 0.00 2.01
3901 8724 4.213270 CCACTCAACTTTCAGCATTCGTTA 59.787 41.667 0.00 0.00 0.00 3.18
3902 8725 3.003689 CCACTCAACTTTCAGCATTCGTT 59.996 43.478 0.00 0.00 0.00 3.85
3910 8733 2.149578 CCAGAGCCACTCAACTTTCAG 58.850 52.381 0.00 0.00 32.06 3.02
3978 8801 4.142816 GGACATTGATACTTCACAGTGCAC 60.143 45.833 9.40 9.40 34.06 4.57
3992 8815 6.040166 GCATATTCTGGTCTTTGGACATTGAT 59.960 38.462 0.00 0.00 43.77 2.57
3996 8819 4.210331 GGCATATTCTGGTCTTTGGACAT 58.790 43.478 0.00 0.00 43.77 3.06
4000 8823 2.310538 GGGGCATATTCTGGTCTTTGG 58.689 52.381 0.00 0.00 0.00 3.28
4127 8951 5.734855 TTTGAACACTGTCTGCTTAACTC 57.265 39.130 0.00 0.00 0.00 3.01
4131 8955 6.942532 AGAATTTTGAACACTGTCTGCTTA 57.057 33.333 0.00 0.00 0.00 3.09
4132 8956 5.841957 AGAATTTTGAACACTGTCTGCTT 57.158 34.783 0.00 0.00 0.00 3.91
4133 8957 5.841957 AAGAATTTTGAACACTGTCTGCT 57.158 34.783 0.00 0.00 0.00 4.24
4512 9372 6.037098 CACACCCTTTAGAAGAAGATACTCG 58.963 44.000 0.00 0.00 0.00 4.18
4656 9516 1.414181 ACGTGCTGGATATCAGGGAAG 59.586 52.381 4.83 3.01 43.54 3.46
5128 9988 9.453572 AGATTTGCATGATACTTCACTCTTAAA 57.546 29.630 0.00 0.00 33.85 1.52
5129 9989 8.886719 CAGATTTGCATGATACTTCACTCTTAA 58.113 33.333 0.00 0.00 33.85 1.85
5130 9990 8.260114 TCAGATTTGCATGATACTTCACTCTTA 58.740 33.333 0.00 0.00 33.85 2.10
5131 9991 7.108194 TCAGATTTGCATGATACTTCACTCTT 58.892 34.615 0.00 0.00 33.85 2.85
5132 9992 6.647229 TCAGATTTGCATGATACTTCACTCT 58.353 36.000 0.00 0.00 33.85 3.24
5133 9993 6.915544 TCAGATTTGCATGATACTTCACTC 57.084 37.500 0.00 0.00 33.85 3.51
5134 9994 6.883217 ACTTCAGATTTGCATGATACTTCACT 59.117 34.615 0.00 0.00 33.85 3.41
5136 9996 7.148188 GGAACTTCAGATTTGCATGATACTTCA 60.148 37.037 0.00 0.00 36.00 3.02
5137 9997 7.192232 GGAACTTCAGATTTGCATGATACTTC 58.808 38.462 0.00 0.00 0.00 3.01
5138 9998 6.096001 GGGAACTTCAGATTTGCATGATACTT 59.904 38.462 0.00 0.00 0.00 2.24
5139 9999 5.591877 GGGAACTTCAGATTTGCATGATACT 59.408 40.000 0.00 0.00 0.00 2.12
5140 10000 5.591877 AGGGAACTTCAGATTTGCATGATAC 59.408 40.000 0.00 0.00 37.44 2.24
5141 10001 5.759059 AGGGAACTTCAGATTTGCATGATA 58.241 37.500 0.00 0.00 37.44 2.15
5142 10002 4.607239 AGGGAACTTCAGATTTGCATGAT 58.393 39.130 0.00 0.00 37.44 2.45
5143 10003 4.012374 GAGGGAACTTCAGATTTGCATGA 58.988 43.478 0.00 0.00 44.43 3.07
5144 10004 3.129988 GGAGGGAACTTCAGATTTGCATG 59.870 47.826 0.00 0.00 44.43 4.06
5145 10005 3.011032 AGGAGGGAACTTCAGATTTGCAT 59.989 43.478 0.00 0.00 44.43 3.96
5146 10006 2.376518 AGGAGGGAACTTCAGATTTGCA 59.623 45.455 0.00 0.00 44.43 4.08
5147 10007 3.078891 AGGAGGGAACTTCAGATTTGC 57.921 47.619 0.00 0.00 44.43 3.68
5148 10008 5.810095 ACTAAGGAGGGAACTTCAGATTTG 58.190 41.667 0.00 0.00 44.43 2.32
5149 10009 5.548056 TGACTAAGGAGGGAACTTCAGATTT 59.452 40.000 0.00 0.00 44.43 2.17
5183 10043 8.900511 AAACATAATGTGATGACAAATCTTCG 57.099 30.769 0.00 0.00 35.11 3.79
5272 10132 8.773645 CGAAAAATCTGCCACTCAATATACATA 58.226 33.333 0.00 0.00 0.00 2.29
5273 10133 7.255242 CCGAAAAATCTGCCACTCAATATACAT 60.255 37.037 0.00 0.00 0.00 2.29
5274 10134 6.038161 CCGAAAAATCTGCCACTCAATATACA 59.962 38.462 0.00 0.00 0.00 2.29
5275 10135 6.038271 ACCGAAAAATCTGCCACTCAATATAC 59.962 38.462 0.00 0.00 0.00 1.47
5276 10136 6.038161 CACCGAAAAATCTGCCACTCAATATA 59.962 38.462 0.00 0.00 0.00 0.86
5335 10195 9.601217 AAAGCGTTTAGATCACTATTTAGACAT 57.399 29.630 0.00 0.00 0.00 3.06
5336 10196 8.997621 AAAGCGTTTAGATCACTATTTAGACA 57.002 30.769 0.00 0.00 0.00 3.41
5474 10337 3.660501 TCAAACTAGTGTGATGCTCGT 57.339 42.857 11.94 0.00 0.00 4.18
5571 10434 5.121811 TGACGTATCTAGGAGGTAAGTGTC 58.878 45.833 0.00 0.00 0.00 3.67
5591 10454 3.693300 TTCGTCGACGCTAAAATTGAC 57.307 42.857 32.19 0.00 39.60 3.18
5599 10462 0.447406 TCCGAAATTCGTCGACGCTA 59.553 50.000 32.19 22.11 43.86 4.26
5697 10570 5.816258 GGTTATCTTAAAAGCTTCTAGCCGT 59.184 40.000 0.00 0.00 43.77 5.68
5700 10573 6.598064 TGGTGGTTATCTTAAAAGCTTCTAGC 59.402 38.462 0.00 0.00 42.84 3.42
5718 10591 3.454812 GAGGTGGTAGTATCATGGTGGTT 59.545 47.826 0.00 0.00 0.00 3.67
5736 10609 4.584743 GTCATCACCTTTTGAAAAGGAGGT 59.415 41.667 35.90 25.11 42.58 3.85
5745 10618 2.400399 GTCGTCGTCATCACCTTTTGA 58.600 47.619 0.00 0.00 39.11 2.69
5762 10635 6.255020 GGTTGTAACAGTAGTATTGATGGTCG 59.745 42.308 0.00 0.00 0.00 4.79
5765 10638 6.315393 GGTGGTTGTAACAGTAGTATTGATGG 59.685 42.308 0.00 0.00 0.00 3.51
5797 10672 7.190501 AGGTTTCTTAGGGTACTCTAATCTGT 58.809 38.462 15.58 0.00 0.00 3.41
5826 10701 3.145286 TGTGATGCTCGTCCATTCAAAA 58.855 40.909 0.00 0.00 0.00 2.44
5833 10708 2.125952 CGCTGTGATGCTCGTCCA 60.126 61.111 0.00 0.00 0.00 4.02
5869 10752 5.929992 TCGACAAGAATCTCCACGTAAAATT 59.070 36.000 0.00 0.00 0.00 1.82
5872 10755 4.508461 TCGACAAGAATCTCCACGTAAA 57.492 40.909 0.00 0.00 0.00 2.01
5873 10756 4.713824 ATCGACAAGAATCTCCACGTAA 57.286 40.909 0.00 0.00 0.00 3.18
5874 10757 6.387041 AATATCGACAAGAATCTCCACGTA 57.613 37.500 0.00 0.00 0.00 3.57
5875 10758 4.920640 ATATCGACAAGAATCTCCACGT 57.079 40.909 0.00 0.00 0.00 4.49
5876 10759 6.589830 AAAATATCGACAAGAATCTCCACG 57.410 37.500 0.00 0.00 0.00 4.94
5912 10795 8.031864 GCTTATCTATCTATGCACATGTACTGT 58.968 37.037 0.00 0.00 39.20 3.55
5913 10796 8.031277 TGCTTATCTATCTATGCACATGTACTG 58.969 37.037 0.00 0.00 29.71 2.74
5914 10797 8.031864 GTGCTTATCTATCTATGCACATGTACT 58.968 37.037 0.00 0.00 45.23 2.73
5915 10798 8.179148 GTGCTTATCTATCTATGCACATGTAC 57.821 38.462 0.00 0.00 45.23 2.90
5927 10810 9.934784 AGGATGAGTATATGTGCTTATCTATCT 57.065 33.333 10.90 0.10 34.76 1.98
5931 10814 9.706529 TCATAGGATGAGTATATGTGCTTATCT 57.293 33.333 10.90 2.57 34.76 1.98
5934 10817 9.088987 TGTTCATAGGATGAGTATATGTGCTTA 57.911 33.333 0.00 0.00 40.94 3.09
5935 10818 7.875041 GTGTTCATAGGATGAGTATATGTGCTT 59.125 37.037 0.00 0.00 40.94 3.91
5936 10819 7.382110 GTGTTCATAGGATGAGTATATGTGCT 58.618 38.462 0.00 0.00 40.94 4.40
5937 10820 6.309009 CGTGTTCATAGGATGAGTATATGTGC 59.691 42.308 0.00 0.00 40.94 4.57
5938 10821 6.309009 GCGTGTTCATAGGATGAGTATATGTG 59.691 42.308 0.00 0.00 40.94 3.21
5939 10822 6.015434 TGCGTGTTCATAGGATGAGTATATGT 60.015 38.462 0.00 0.00 40.94 2.29
5940 10823 6.309009 GTGCGTGTTCATAGGATGAGTATATG 59.691 42.308 0.00 0.00 40.94 1.78
5941 10824 6.015434 TGTGCGTGTTCATAGGATGAGTATAT 60.015 38.462 0.00 0.00 40.94 0.86
5942 10825 5.300792 TGTGCGTGTTCATAGGATGAGTATA 59.699 40.000 0.00 0.00 40.94 1.47
5943 10826 4.099419 TGTGCGTGTTCATAGGATGAGTAT 59.901 41.667 0.00 0.00 40.94 2.12
5944 10827 3.445805 TGTGCGTGTTCATAGGATGAGTA 59.554 43.478 0.00 0.00 40.94 2.59
5945 10828 2.233676 TGTGCGTGTTCATAGGATGAGT 59.766 45.455 0.00 0.00 40.94 3.41
5946 10829 2.892374 TGTGCGTGTTCATAGGATGAG 58.108 47.619 0.00 0.00 40.94 2.90
5947 10830 3.132824 AGATGTGCGTGTTCATAGGATGA 59.867 43.478 0.00 0.00 37.55 2.92
5948 10831 3.461061 AGATGTGCGTGTTCATAGGATG 58.539 45.455 0.00 0.00 0.00 3.51
5949 10832 3.827008 AGATGTGCGTGTTCATAGGAT 57.173 42.857 0.00 0.00 0.00 3.24
5950 10833 3.610040 AAGATGTGCGTGTTCATAGGA 57.390 42.857 0.00 0.00 0.00 2.94
5951 10834 3.555956 GGTAAGATGTGCGTGTTCATAGG 59.444 47.826 0.00 0.00 0.00 2.57
5952 10835 3.555956 GGGTAAGATGTGCGTGTTCATAG 59.444 47.826 0.00 0.00 0.00 2.23
5953 10836 3.055747 TGGGTAAGATGTGCGTGTTCATA 60.056 43.478 0.00 0.00 0.00 2.15
5954 10837 2.290008 TGGGTAAGATGTGCGTGTTCAT 60.290 45.455 0.00 0.00 0.00 2.57
5955 10838 1.070914 TGGGTAAGATGTGCGTGTTCA 59.929 47.619 0.00 0.00 0.00 3.18
5956 10839 1.803334 TGGGTAAGATGTGCGTGTTC 58.197 50.000 0.00 0.00 0.00 3.18
5957 10840 2.264005 TTGGGTAAGATGTGCGTGTT 57.736 45.000 0.00 0.00 0.00 3.32
5958 10841 2.264005 TTTGGGTAAGATGTGCGTGT 57.736 45.000 0.00 0.00 0.00 4.49
5959 10842 2.746904 TCATTTGGGTAAGATGTGCGTG 59.253 45.455 0.00 0.00 0.00 5.34
5960 10843 3.009723 CTCATTTGGGTAAGATGTGCGT 58.990 45.455 0.00 0.00 0.00 5.24
5961 10844 2.223340 GCTCATTTGGGTAAGATGTGCG 60.223 50.000 0.00 0.00 32.76 5.34
5962 10845 2.754552 TGCTCATTTGGGTAAGATGTGC 59.245 45.455 0.00 0.00 39.45 4.57
5963 10846 3.129287 GGTGCTCATTTGGGTAAGATGTG 59.871 47.826 0.00 0.00 0.00 3.21
5964 10847 3.010584 AGGTGCTCATTTGGGTAAGATGT 59.989 43.478 0.00 0.00 0.00 3.06
5965 10848 3.624777 AGGTGCTCATTTGGGTAAGATG 58.375 45.455 0.00 0.00 0.00 2.90
5966 10849 3.525199 AGAGGTGCTCATTTGGGTAAGAT 59.475 43.478 0.00 0.00 32.06 2.40
5967 10850 2.912956 AGAGGTGCTCATTTGGGTAAGA 59.087 45.455 0.00 0.00 32.06 2.10
5968 10851 3.012518 CAGAGGTGCTCATTTGGGTAAG 58.987 50.000 0.00 0.00 32.06 2.34
5969 10852 2.642311 TCAGAGGTGCTCATTTGGGTAA 59.358 45.455 0.00 0.00 32.06 2.85
5970 10853 2.237143 CTCAGAGGTGCTCATTTGGGTA 59.763 50.000 0.00 0.00 32.06 3.69
5971 10854 1.004044 CTCAGAGGTGCTCATTTGGGT 59.996 52.381 0.00 0.00 32.06 4.51
5972 10855 1.280133 TCTCAGAGGTGCTCATTTGGG 59.720 52.381 0.00 0.00 32.06 4.12
5973 10856 2.235650 TCTCTCAGAGGTGCTCATTTGG 59.764 50.000 0.57 0.00 32.06 3.28
5974 10857 3.055963 AGTCTCTCAGAGGTGCTCATTTG 60.056 47.826 0.57 0.00 32.06 2.32
5975 10858 3.172339 AGTCTCTCAGAGGTGCTCATTT 58.828 45.455 0.57 0.00 32.06 2.32
5976 10859 2.818921 AGTCTCTCAGAGGTGCTCATT 58.181 47.619 0.57 0.00 32.06 2.57
5977 10860 2.530460 AGTCTCTCAGAGGTGCTCAT 57.470 50.000 0.57 0.00 32.06 2.90
5978 10861 3.441500 TTAGTCTCTCAGAGGTGCTCA 57.558 47.619 0.57 0.00 32.06 4.26
5979 10862 3.119280 GGTTTAGTCTCTCAGAGGTGCTC 60.119 52.174 0.57 0.00 0.00 4.26
5980 10863 2.829120 GGTTTAGTCTCTCAGAGGTGCT 59.171 50.000 0.57 0.93 0.00 4.40
5981 10864 2.416162 CGGTTTAGTCTCTCAGAGGTGC 60.416 54.545 0.57 0.00 0.00 5.01
5982 10865 3.082548 TCGGTTTAGTCTCTCAGAGGTG 58.917 50.000 0.57 0.00 0.00 4.00
5983 10866 3.083293 GTCGGTTTAGTCTCTCAGAGGT 58.917 50.000 0.57 0.00 0.00 3.85
5984 10867 2.096174 CGTCGGTTTAGTCTCTCAGAGG 59.904 54.545 0.57 0.00 0.00 3.69
5985 10868 2.476519 GCGTCGGTTTAGTCTCTCAGAG 60.477 54.545 0.00 0.00 0.00 3.35
5986 10869 1.467734 GCGTCGGTTTAGTCTCTCAGA 59.532 52.381 0.00 0.00 0.00 3.27
5987 10870 1.199327 TGCGTCGGTTTAGTCTCTCAG 59.801 52.381 0.00 0.00 0.00 3.35
5988 10871 1.241165 TGCGTCGGTTTAGTCTCTCA 58.759 50.000 0.00 0.00 0.00 3.27
5989 10872 2.159421 TGATGCGTCGGTTTAGTCTCTC 60.159 50.000 0.58 0.00 0.00 3.20
5990 10873 1.816835 TGATGCGTCGGTTTAGTCTCT 59.183 47.619 0.58 0.00 0.00 3.10
5991 10874 2.273370 TGATGCGTCGGTTTAGTCTC 57.727 50.000 0.58 0.00 0.00 3.36
5992 10875 2.427453 AGATGATGCGTCGGTTTAGTCT 59.573 45.455 0.58 0.00 0.00 3.24
5993 10876 2.810650 AGATGATGCGTCGGTTTAGTC 58.189 47.619 0.58 0.00 0.00 2.59
5994 10877 2.930040 CAAGATGATGCGTCGGTTTAGT 59.070 45.455 0.58 0.00 0.00 2.24
5995 10878 3.186909 TCAAGATGATGCGTCGGTTTAG 58.813 45.455 0.58 0.00 0.00 1.85
5996 10879 3.119280 TCTCAAGATGATGCGTCGGTTTA 60.119 43.478 0.58 0.00 0.00 2.01
5997 10880 2.002586 CTCAAGATGATGCGTCGGTTT 58.997 47.619 0.58 0.00 0.00 3.27
5998 10881 1.204704 TCTCAAGATGATGCGTCGGTT 59.795 47.619 0.58 0.00 0.00 4.44
5999 10882 0.817654 TCTCAAGATGATGCGTCGGT 59.182 50.000 0.58 0.00 0.00 4.69
6000 10883 2.145958 ATCTCAAGATGATGCGTCGG 57.854 50.000 0.58 0.00 32.68 4.79
6001 10884 3.118542 TCAATCTCAAGATGATGCGTCG 58.881 45.455 0.58 0.00 34.49 5.12
6002 10885 4.083961 CCATCAATCTCAAGATGATGCGTC 60.084 45.833 17.71 0.00 43.28 5.19
6003 10886 3.813724 CCATCAATCTCAAGATGATGCGT 59.186 43.478 17.71 0.00 43.28 5.24
6004 10887 4.062991 TCCATCAATCTCAAGATGATGCG 58.937 43.478 17.71 13.81 43.28 4.73
6005 10888 5.064558 ACTCCATCAATCTCAAGATGATGC 58.935 41.667 17.71 0.00 43.28 3.91
6006 10889 6.017026 CCAACTCCATCAATCTCAAGATGATG 60.017 42.308 16.92 16.92 43.28 3.07
6007 10890 6.062749 CCAACTCCATCAATCTCAAGATGAT 58.937 40.000 4.12 0.00 43.28 2.45
6008 10891 5.434408 CCAACTCCATCAATCTCAAGATGA 58.566 41.667 4.12 0.00 43.28 2.92
6009 10892 4.036498 GCCAACTCCATCAATCTCAAGATG 59.964 45.833 0.00 0.00 40.94 2.90
6010 10893 4.205587 GCCAACTCCATCAATCTCAAGAT 58.794 43.478 0.00 0.00 36.07 2.40
6011 10894 3.009363 TGCCAACTCCATCAATCTCAAGA 59.991 43.478 0.00 0.00 0.00 3.02
6012 10895 3.128242 GTGCCAACTCCATCAATCTCAAG 59.872 47.826 0.00 0.00 0.00 3.02
6013 10896 3.084039 GTGCCAACTCCATCAATCTCAA 58.916 45.455 0.00 0.00 0.00 3.02
6014 10897 2.040145 TGTGCCAACTCCATCAATCTCA 59.960 45.455 0.00 0.00 0.00 3.27
6015 10898 2.715046 TGTGCCAACTCCATCAATCTC 58.285 47.619 0.00 0.00 0.00 2.75
6016 10899 2.885135 TGTGCCAACTCCATCAATCT 57.115 45.000 0.00 0.00 0.00 2.40
6017 10900 3.005684 TGTTTGTGCCAACTCCATCAATC 59.994 43.478 0.00 0.00 0.00 2.67
6018 10901 2.964464 TGTTTGTGCCAACTCCATCAAT 59.036 40.909 0.00 0.00 0.00 2.57
6019 10902 2.100584 GTGTTTGTGCCAACTCCATCAA 59.899 45.455 0.00 0.00 0.00 2.57
6020 10903 1.680735 GTGTTTGTGCCAACTCCATCA 59.319 47.619 0.00 0.00 0.00 3.07
6021 10904 1.000274 GGTGTTTGTGCCAACTCCATC 60.000 52.381 6.71 0.00 33.91 3.51
6022 10905 1.039856 GGTGTTTGTGCCAACTCCAT 58.960 50.000 6.71 0.00 33.91 3.41
6023 10906 0.033601 AGGTGTTTGTGCCAACTCCA 60.034 50.000 11.87 0.00 35.61 3.86
6024 10907 1.111277 AAGGTGTTTGTGCCAACTCC 58.889 50.000 4.30 4.30 33.91 3.85
6025 10908 4.584327 ATTAAGGTGTTTGTGCCAACTC 57.416 40.909 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.