Multiple sequence alignment - TraesCS3A01G121800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G121800 chr3A 100.000 2345 0 0 1 2345 95577222 95579566 0.000000e+00 4331.0
1 TraesCS3A01G121800 chr3A 96.762 803 24 2 1188 1988 95567627 95568429 0.000000e+00 1338.0
2 TraesCS3A01G121800 chr3A 94.759 706 27 2 400 1096 95566918 95567622 0.000000e+00 1090.0
3 TraesCS3A01G121800 chr3A 84.226 672 88 18 1327 1989 675287279 675287941 2.540000e-179 638.0
4 TraesCS3A01G121800 chr3A 91.729 399 33 0 2 400 95566477 95566875 2.630000e-154 555.0
5 TraesCS3A01G121800 chr3A 93.220 118 2 5 894 1006 151788049 151788165 4.010000e-38 169.0
6 TraesCS3A01G121800 chr3A 92.373 118 3 5 894 1006 151801204 151801320 1.860000e-36 163.0
7 TraesCS3A01G121800 chr3A 91.304 115 10 0 198 312 166619567 166619453 8.680000e-35 158.0
8 TraesCS3A01G121800 chr7A 94.157 1506 67 9 398 1889 107955758 107957256 0.000000e+00 2274.0
9 TraesCS3A01G121800 chr7A 92.196 1512 78 12 398 1891 108004720 108006209 0.000000e+00 2102.0
10 TraesCS3A01G121800 chr7A 88.099 1378 105 25 635 1988 672048858 672047516 0.000000e+00 1581.0
11 TraesCS3A01G121800 chr7A 91.048 525 37 4 398 913 374233817 374233294 0.000000e+00 701.0
12 TraesCS3A01G121800 chr7A 84.992 593 73 15 1402 1988 575069367 575069949 2.600000e-164 588.0
13 TraesCS3A01G121800 chr7A 90.500 400 38 0 1 400 108004280 108004679 1.600000e-146 529.0
14 TraesCS3A01G121800 chr7A 93.846 130 8 0 82 211 428319314 428319185 1.840000e-46 196.0
15 TraesCS3A01G121800 chr7A 90.769 130 12 0 82 211 428311080 428310951 8.610000e-40 174.0
16 TraesCS3A01G121800 chr7A 93.023 86 6 0 828 913 263166993 263167078 2.450000e-25 126.0
17 TraesCS3A01G121800 chr7A 87.059 85 9 1 4 88 277308501 277308583 6.900000e-16 95.3
18 TraesCS3A01G121800 chr7A 94.118 51 2 1 195 245 520573819 520573770 2.500000e-10 76.8
19 TraesCS3A01G121800 chr7A 95.455 44 1 1 195 238 408730166 408730208 4.180000e-08 69.4
20 TraesCS3A01G121800 chr7A 89.091 55 5 1 191 245 341120894 341120947 1.500000e-07 67.6
21 TraesCS3A01G121800 chr7A 93.333 45 3 0 201 245 393497692 393497648 1.500000e-07 67.6
22 TraesCS3A01G121800 chr7A 87.273 55 7 0 191 245 315289127 315289181 1.950000e-06 63.9
23 TraesCS3A01G121800 chr5A 96.400 889 32 0 1003 1891 382435065 382435953 0.000000e+00 1465.0
24 TraesCS3A01G121800 chr5A 94.105 916 31 7 987 1902 382442894 382443786 0.000000e+00 1371.0
25 TraesCS3A01G121800 chr5A 85.598 368 43 6 560 917 505855062 505855429 6.120000e-101 377.0
26 TraesCS3A01G121800 chr5A 94.048 168 10 0 399 566 75562251 75562418 2.990000e-64 255.0
27 TraesCS3A01G121800 chr5A 90.099 101 9 1 1095 1194 263325998 263325898 1.890000e-26 130.0
28 TraesCS3A01G121800 chr2A 92.484 612 43 1 398 1006 715683378 715682767 0.000000e+00 872.0
29 TraesCS3A01G121800 chr2A 94.009 217 12 1 1 217 715683978 715683763 6.250000e-86 327.0
30 TraesCS3A01G121800 chr2A 92.627 217 15 1 1 217 715676159 715675944 6.290000e-81 311.0
31 TraesCS3A01G121800 chr2A 88.716 257 24 5 1040 1294 271236297 271236044 2.260000e-80 309.0
32 TraesCS3A01G121800 chr2A 90.964 166 14 1 1063 1227 223269891 223269726 3.030000e-54 222.0
33 TraesCS3A01G121800 chr2A 94.118 119 7 0 3 121 297363087 297362969 5.150000e-42 182.0
34 TraesCS3A01G121800 chr4A 91.304 621 42 5 398 1006 318848014 318847394 0.000000e+00 837.0
35 TraesCS3A01G121800 chr4A 82.754 748 95 30 1256 1988 205552945 205552217 9.140000e-179 636.0
36 TraesCS3A01G121800 chr4A 82.172 746 101 30 1256 1988 297982488 297983214 1.540000e-171 612.0
37 TraesCS3A01G121800 chr4A 92.417 211 15 1 7 217 318848611 318848402 1.360000e-77 300.0
38 TraesCS3A01G121800 chr4A 93.443 122 8 0 1 122 256397771 256397650 5.150000e-42 182.0
39 TraesCS3A01G121800 chr4A 93.277 119 8 0 1 119 426913907 426914025 2.400000e-40 176.0
40 TraesCS3A01G121800 chr4A 88.028 142 16 1 76 217 408836920 408837060 1.440000e-37 167.0
41 TraesCS3A01G121800 chr6A 92.000 525 33 1 398 913 396908492 396907968 0.000000e+00 728.0
42 TraesCS3A01G121800 chr6A 90.476 210 18 2 8 217 396909091 396908884 2.300000e-70 276.0
43 TraesCS3A01G121800 chr1A 89.122 524 44 6 400 913 329767730 329768250 7.070000e-180 640.0
44 TraesCS3A01G121800 chr3B 93.103 58 4 0 198 255 200396660 200396717 4.150000e-13 86.1
45 TraesCS3A01G121800 chr3B 96.078 51 1 1 195 245 269854021 269854070 5.370000e-12 82.4
46 TraesCS3A01G121800 chr3B 94.118 51 2 1 195 245 601024328 601024279 2.500000e-10 76.8
47 TraesCS3A01G121800 chr3B 89.655 58 6 0 198 255 216250759 216250816 8.990000e-10 75.0
48 TraesCS3A01G121800 chr3B 92.157 51 3 1 195 245 229333312 229333361 1.160000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G121800 chr3A 95577222 95579566 2344 False 4331.000000 4331 100.000000 1 2345 1 chr3A.!!$F1 2344
1 TraesCS3A01G121800 chr3A 95566477 95568429 1952 False 994.333333 1338 94.416667 2 1988 3 chr3A.!!$F5 1986
2 TraesCS3A01G121800 chr3A 675287279 675287941 662 False 638.000000 638 84.226000 1327 1989 1 chr3A.!!$F4 662
3 TraesCS3A01G121800 chr7A 107955758 107957256 1498 False 2274.000000 2274 94.157000 398 1889 1 chr7A.!!$F1 1491
4 TraesCS3A01G121800 chr7A 672047516 672048858 1342 True 1581.000000 1581 88.099000 635 1988 1 chr7A.!!$R6 1353
5 TraesCS3A01G121800 chr7A 108004280 108006209 1929 False 1315.500000 2102 91.348000 1 1891 2 chr7A.!!$F8 1890
6 TraesCS3A01G121800 chr7A 374233294 374233817 523 True 701.000000 701 91.048000 398 913 1 chr7A.!!$R1 515
7 TraesCS3A01G121800 chr7A 575069367 575069949 582 False 588.000000 588 84.992000 1402 1988 1 chr7A.!!$F7 586
8 TraesCS3A01G121800 chr5A 382435065 382435953 888 False 1465.000000 1465 96.400000 1003 1891 1 chr5A.!!$F2 888
9 TraesCS3A01G121800 chr5A 382442894 382443786 892 False 1371.000000 1371 94.105000 987 1902 1 chr5A.!!$F3 915
10 TraesCS3A01G121800 chr2A 715682767 715683978 1211 True 599.500000 872 93.246500 1 1006 2 chr2A.!!$R5 1005
11 TraesCS3A01G121800 chr4A 205552217 205552945 728 True 636.000000 636 82.754000 1256 1988 1 chr4A.!!$R1 732
12 TraesCS3A01G121800 chr4A 297982488 297983214 726 False 612.000000 612 82.172000 1256 1988 1 chr4A.!!$F1 732
13 TraesCS3A01G121800 chr4A 318847394 318848611 1217 True 568.500000 837 91.860500 7 1006 2 chr4A.!!$R3 999
14 TraesCS3A01G121800 chr6A 396907968 396909091 1123 True 502.000000 728 91.238000 8 913 2 chr6A.!!$R1 905
15 TraesCS3A01G121800 chr1A 329767730 329768250 520 False 640.000000 640 89.122000 400 913 1 chr1A.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.389426 GCGGTTCTACCTTCGAAGCA 60.389 55.0 19.99 8.46 38.44 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2258 0.326264 AGATGCCTTCCAGCGTTTCT 59.674 50.0 0.0 0.0 34.32 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.872679 GTCATCGTCTCGGCGGTTC 60.873 63.158 7.21 0.00 0.00 3.62
41 42 0.389426 GCGGTTCTACCTTCGAAGCA 60.389 55.000 19.99 8.46 38.44 3.91
162 163 1.716826 GAGGTTCTCGCGATCTCGGT 61.717 60.000 10.36 0.00 40.23 4.69
171 172 1.953138 CGATCTCGGTGATGGCAGC 60.953 63.158 0.00 0.00 39.10 5.25
238 240 0.389948 GCGAGGAACTTGACGTCCAT 60.390 55.000 14.12 0.00 44.22 3.41
275 444 6.238648 AGAGGTATTCGTTTTGAAGGTGAAT 58.761 36.000 0.00 0.00 40.65 2.57
312 481 2.604139 CCTTTGGGGTTGTTGTGGTAT 58.396 47.619 0.00 0.00 0.00 2.73
323 492 2.714250 TGTTGTGGTATTTGGGGTCTCT 59.286 45.455 0.00 0.00 0.00 3.10
324 493 3.911260 TGTTGTGGTATTTGGGGTCTCTA 59.089 43.478 0.00 0.00 0.00 2.43
335 504 1.142097 GGTCTCTAGACTTGCCGGC 59.858 63.158 22.73 22.73 44.20 6.13
377 546 0.962356 TACACGGTTCGGAGAGGACC 60.962 60.000 0.00 0.00 38.43 4.46
385 554 1.213013 CGGAGAGGACCTGTCGTTG 59.787 63.158 12.27 1.66 0.00 4.10
387 556 1.666011 GAGAGGACCTGTCGTTGCA 59.334 57.895 0.00 0.00 0.00 4.08
432 651 1.069513 CGTAACCAGTGGTTGTGGAGA 59.930 52.381 33.42 12.97 46.35 3.71
475 695 2.628657 GGCCATCGTAGAGGTACTTGAT 59.371 50.000 0.00 0.00 43.63 2.57
558 778 1.227823 CCTGTGCTCACCGGTGAAA 60.228 57.895 35.36 24.46 39.39 2.69
1080 1330 2.758737 AACGAGGTAGGGCTCGGG 60.759 66.667 0.00 0.00 46.10 5.14
1081 1331 3.292481 AACGAGGTAGGGCTCGGGA 62.292 63.158 0.00 0.00 46.10 5.14
1223 1473 3.075882 AGGAAGATGGAGATCGAGGAGAT 59.924 47.826 0.00 0.00 43.51 2.75
1468 1749 1.686052 GGATTTGCGCATGGGGATAAA 59.314 47.619 12.75 0.00 0.00 1.40
1509 1790 2.942376 TGTGCTCATTCCGCGAAAATAT 59.058 40.909 8.23 0.00 0.00 1.28
1512 1793 5.140177 GTGCTCATTCCGCGAAAATATAAG 58.860 41.667 8.23 6.82 0.00 1.73
1664 1975 7.004086 AGAATTGTGGACAAGATTTGAAGGTA 58.996 34.615 0.00 0.00 39.47 3.08
1942 2258 5.749596 AACAAATCACACAACGAATCTCA 57.250 34.783 0.00 0.00 0.00 3.27
1948 2266 3.489416 TCACACAACGAATCTCAGAAACG 59.511 43.478 0.00 2.91 0.00 3.60
1989 2307 1.586154 GGTCTTGGGGCGTCACAATG 61.586 60.000 4.54 0.00 0.00 2.82
1990 2308 0.605319 GTCTTGGGGCGTCACAATGA 60.605 55.000 4.54 2.25 0.00 2.57
1991 2309 0.327924 TCTTGGGGCGTCACAATGAT 59.672 50.000 4.54 0.00 0.00 2.45
1992 2310 0.734889 CTTGGGGCGTCACAATGATC 59.265 55.000 4.54 0.00 0.00 2.92
1993 2311 0.327924 TTGGGGCGTCACAATGATCT 59.672 50.000 0.00 0.00 0.00 2.75
1994 2312 0.327924 TGGGGCGTCACAATGATCTT 59.672 50.000 0.00 0.00 0.00 2.40
1995 2313 1.271871 TGGGGCGTCACAATGATCTTT 60.272 47.619 0.00 0.00 0.00 2.52
1996 2314 1.818674 GGGGCGTCACAATGATCTTTT 59.181 47.619 0.00 0.00 0.00 2.27
1997 2315 2.415893 GGGGCGTCACAATGATCTTTTG 60.416 50.000 7.24 7.24 0.00 2.44
1998 2316 2.415893 GGGCGTCACAATGATCTTTTGG 60.416 50.000 11.86 0.12 0.00 3.28
1999 2317 2.415893 GGCGTCACAATGATCTTTTGGG 60.416 50.000 11.86 8.73 0.00 4.12
2000 2318 2.867429 CGTCACAATGATCTTTTGGGC 58.133 47.619 11.86 5.35 0.00 5.36
2001 2319 2.489329 CGTCACAATGATCTTTTGGGCT 59.511 45.455 11.86 0.00 0.00 5.19
2002 2320 3.671433 CGTCACAATGATCTTTTGGGCTG 60.671 47.826 11.86 3.96 0.00 4.85
2003 2321 3.256631 GTCACAATGATCTTTTGGGCTGT 59.743 43.478 11.86 0.00 0.00 4.40
2004 2322 4.458989 GTCACAATGATCTTTTGGGCTGTA 59.541 41.667 11.86 0.00 0.00 2.74
2005 2323 5.048083 GTCACAATGATCTTTTGGGCTGTAA 60.048 40.000 11.86 0.00 0.00 2.41
2006 2324 5.716228 TCACAATGATCTTTTGGGCTGTAAT 59.284 36.000 11.86 0.00 0.00 1.89
2007 2325 6.211184 TCACAATGATCTTTTGGGCTGTAATT 59.789 34.615 11.86 0.00 0.00 1.40
2008 2326 6.875195 CACAATGATCTTTTGGGCTGTAATTT 59.125 34.615 11.86 0.00 0.00 1.82
2009 2327 7.388500 CACAATGATCTTTTGGGCTGTAATTTT 59.612 33.333 11.86 0.00 0.00 1.82
2010 2328 7.388500 ACAATGATCTTTTGGGCTGTAATTTTG 59.612 33.333 11.86 0.00 0.00 2.44
2011 2329 6.662865 TGATCTTTTGGGCTGTAATTTTGA 57.337 33.333 0.00 0.00 0.00 2.69
2012 2330 7.243604 TGATCTTTTGGGCTGTAATTTTGAT 57.756 32.000 0.00 0.00 0.00 2.57
2013 2331 7.098477 TGATCTTTTGGGCTGTAATTTTGATG 58.902 34.615 0.00 0.00 0.00 3.07
2014 2332 5.792741 TCTTTTGGGCTGTAATTTTGATGG 58.207 37.500 0.00 0.00 0.00 3.51
2015 2333 4.550076 TTTGGGCTGTAATTTTGATGGG 57.450 40.909 0.00 0.00 0.00 4.00
2016 2334 1.830477 TGGGCTGTAATTTTGATGGGC 59.170 47.619 0.00 0.00 0.00 5.36
2017 2335 2.110578 GGGCTGTAATTTTGATGGGCT 58.889 47.619 0.00 0.00 0.00 5.19
2018 2336 2.501316 GGGCTGTAATTTTGATGGGCTT 59.499 45.455 0.00 0.00 0.00 4.35
2019 2337 3.704061 GGGCTGTAATTTTGATGGGCTTA 59.296 43.478 0.00 0.00 0.00 3.09
2020 2338 4.202151 GGGCTGTAATTTTGATGGGCTTAG 60.202 45.833 0.00 0.00 0.00 2.18
2021 2339 4.402474 GGCTGTAATTTTGATGGGCTTAGT 59.598 41.667 0.00 0.00 0.00 2.24
2022 2340 5.343249 GCTGTAATTTTGATGGGCTTAGTG 58.657 41.667 0.00 0.00 0.00 2.74
2023 2341 5.125417 GCTGTAATTTTGATGGGCTTAGTGA 59.875 40.000 0.00 0.00 0.00 3.41
2024 2342 6.678900 GCTGTAATTTTGATGGGCTTAGTGAG 60.679 42.308 0.00 0.00 0.00 3.51
2025 2343 5.652014 TGTAATTTTGATGGGCTTAGTGAGG 59.348 40.000 0.00 0.00 0.00 3.86
2026 2344 4.591321 ATTTTGATGGGCTTAGTGAGGA 57.409 40.909 0.00 0.00 0.00 3.71
2027 2345 4.380843 TTTTGATGGGCTTAGTGAGGAA 57.619 40.909 0.00 0.00 0.00 3.36
2028 2346 3.350219 TTGATGGGCTTAGTGAGGAAC 57.650 47.619 0.00 0.00 0.00 3.62
2029 2347 1.559682 TGATGGGCTTAGTGAGGAACC 59.440 52.381 0.00 0.00 0.00 3.62
2030 2348 0.919710 ATGGGCTTAGTGAGGAACCC 59.080 55.000 0.00 0.00 37.88 4.11
2031 2349 1.205460 TGGGCTTAGTGAGGAACCCC 61.205 60.000 0.00 0.00 36.45 4.95
2033 2351 0.992695 GGCTTAGTGAGGAACCCCTT 59.007 55.000 0.00 0.00 44.53 3.95
2034 2352 1.340114 GGCTTAGTGAGGAACCCCTTG 60.340 57.143 0.00 0.00 44.53 3.61
2035 2353 1.340114 GCTTAGTGAGGAACCCCTTGG 60.340 57.143 0.00 0.00 44.53 3.61
2036 2354 0.696501 TTAGTGAGGAACCCCTTGGC 59.303 55.000 0.00 0.00 44.53 4.52
2037 2355 1.205460 TAGTGAGGAACCCCTTGGCC 61.205 60.000 0.00 0.00 44.53 5.36
2038 2356 3.264845 TGAGGAACCCCTTGGCCC 61.265 66.667 0.00 0.00 44.53 5.80
2039 2357 3.264845 GAGGAACCCCTTGGCCCA 61.265 66.667 0.00 0.00 44.53 5.36
2040 2358 2.537959 AGGAACCCCTTGGCCCAT 60.538 61.111 0.00 0.00 40.78 4.00
2041 2359 2.168272 GAGGAACCCCTTGGCCCATT 62.168 60.000 0.00 0.00 44.53 3.16
2042 2360 1.989508 GGAACCCCTTGGCCCATTG 60.990 63.158 0.00 0.00 33.59 2.82
2043 2361 1.229177 GAACCCCTTGGCCCATTGT 60.229 57.895 0.00 0.00 33.59 2.71
2044 2362 0.835971 GAACCCCTTGGCCCATTGTT 60.836 55.000 0.00 0.00 33.59 2.83
2045 2363 0.835971 AACCCCTTGGCCCATTGTTC 60.836 55.000 0.00 0.00 33.59 3.18
2046 2364 1.079073 CCCCTTGGCCCATTGTTCT 59.921 57.895 0.00 0.00 0.00 3.01
2047 2365 0.545071 CCCCTTGGCCCATTGTTCTT 60.545 55.000 0.00 0.00 0.00 2.52
2048 2366 1.351076 CCCTTGGCCCATTGTTCTTT 58.649 50.000 0.00 0.00 0.00 2.52
2049 2367 1.002315 CCCTTGGCCCATTGTTCTTTG 59.998 52.381 0.00 0.00 0.00 2.77
2050 2368 1.002315 CCTTGGCCCATTGTTCTTTGG 59.998 52.381 0.00 0.00 0.00 3.28
2055 2373 1.616159 CCCATTGTTCTTTGGGTCGT 58.384 50.000 0.00 0.00 46.38 4.34
2056 2374 2.785562 CCCATTGTTCTTTGGGTCGTA 58.214 47.619 0.00 0.00 46.38 3.43
2057 2375 3.352648 CCCATTGTTCTTTGGGTCGTAT 58.647 45.455 0.00 0.00 46.38 3.06
2058 2376 3.761752 CCCATTGTTCTTTGGGTCGTATT 59.238 43.478 0.00 0.00 46.38 1.89
2059 2377 4.142469 CCCATTGTTCTTTGGGTCGTATTC 60.142 45.833 0.00 0.00 46.38 1.75
2060 2378 4.700213 CCATTGTTCTTTGGGTCGTATTCT 59.300 41.667 0.00 0.00 0.00 2.40
2061 2379 5.183140 CCATTGTTCTTTGGGTCGTATTCTT 59.817 40.000 0.00 0.00 0.00 2.52
2062 2380 5.682943 TTGTTCTTTGGGTCGTATTCTTG 57.317 39.130 0.00 0.00 0.00 3.02
2063 2381 4.963373 TGTTCTTTGGGTCGTATTCTTGA 58.037 39.130 0.00 0.00 0.00 3.02
2064 2382 5.556915 TGTTCTTTGGGTCGTATTCTTGAT 58.443 37.500 0.00 0.00 0.00 2.57
2065 2383 5.411361 TGTTCTTTGGGTCGTATTCTTGATG 59.589 40.000 0.00 0.00 0.00 3.07
2066 2384 4.513442 TCTTTGGGTCGTATTCTTGATGG 58.487 43.478 0.00 0.00 0.00 3.51
2067 2385 3.275617 TTGGGTCGTATTCTTGATGGG 57.724 47.619 0.00 0.00 0.00 4.00
2068 2386 1.134220 TGGGTCGTATTCTTGATGGGC 60.134 52.381 0.00 0.00 0.00 5.36
2069 2387 1.594331 GGTCGTATTCTTGATGGGCC 58.406 55.000 0.00 0.00 0.00 5.80
2070 2388 1.141053 GGTCGTATTCTTGATGGGCCT 59.859 52.381 4.53 0.00 0.00 5.19
2071 2389 2.213499 GTCGTATTCTTGATGGGCCTG 58.787 52.381 4.53 0.00 0.00 4.85
2072 2390 1.140852 TCGTATTCTTGATGGGCCTGG 59.859 52.381 4.53 0.00 0.00 4.45
2073 2391 1.134098 CGTATTCTTGATGGGCCTGGT 60.134 52.381 4.53 0.00 0.00 4.00
2074 2392 2.576615 GTATTCTTGATGGGCCTGGTC 58.423 52.381 4.53 0.78 0.00 4.02
2075 2393 1.302907 ATTCTTGATGGGCCTGGTCT 58.697 50.000 4.53 0.00 0.00 3.85
2076 2394 1.075601 TTCTTGATGGGCCTGGTCTT 58.924 50.000 4.53 0.00 0.00 3.01
2077 2395 1.075601 TCTTGATGGGCCTGGTCTTT 58.924 50.000 4.53 0.00 0.00 2.52
2078 2396 1.428912 TCTTGATGGGCCTGGTCTTTT 59.571 47.619 4.53 0.00 0.00 2.27
2079 2397 2.647299 TCTTGATGGGCCTGGTCTTTTA 59.353 45.455 4.53 0.00 0.00 1.52
2080 2398 2.806945 TGATGGGCCTGGTCTTTTAG 57.193 50.000 4.53 0.00 0.00 1.85
2081 2399 1.340991 TGATGGGCCTGGTCTTTTAGC 60.341 52.381 4.53 0.00 0.00 3.09
2082 2400 1.002857 ATGGGCCTGGTCTTTTAGCT 58.997 50.000 4.53 0.00 0.00 3.32
2083 2401 0.038166 TGGGCCTGGTCTTTTAGCTG 59.962 55.000 4.53 0.00 0.00 4.24
2084 2402 0.681243 GGGCCTGGTCTTTTAGCTGG 60.681 60.000 0.84 0.00 44.99 4.85
2085 2403 0.681243 GGCCTGGTCTTTTAGCTGGG 60.681 60.000 0.00 0.00 43.06 4.45
2086 2404 0.038310 GCCTGGTCTTTTAGCTGGGT 59.962 55.000 0.00 0.00 43.06 4.51
2087 2405 1.950954 GCCTGGTCTTTTAGCTGGGTC 60.951 57.143 0.00 0.00 43.06 4.46
2088 2406 1.676014 CCTGGTCTTTTAGCTGGGTCG 60.676 57.143 0.00 0.00 40.12 4.79
2089 2407 0.321298 TGGTCTTTTAGCTGGGTCGC 60.321 55.000 0.00 0.00 0.00 5.19
2090 2408 0.321298 GGTCTTTTAGCTGGGTCGCA 60.321 55.000 0.00 0.00 0.00 5.10
2091 2409 1.679032 GGTCTTTTAGCTGGGTCGCAT 60.679 52.381 0.00 0.00 0.00 4.73
2092 2410 1.398390 GTCTTTTAGCTGGGTCGCATG 59.602 52.381 0.00 0.00 0.00 4.06
2093 2411 0.099436 CTTTTAGCTGGGTCGCATGC 59.901 55.000 7.91 7.91 0.00 4.06
2094 2412 0.607762 TTTTAGCTGGGTCGCATGCA 60.608 50.000 19.57 1.73 0.00 3.96
2095 2413 0.394216 TTTAGCTGGGTCGCATGCAT 60.394 50.000 19.57 0.00 0.00 3.96
2096 2414 0.815213 TTAGCTGGGTCGCATGCATC 60.815 55.000 19.57 9.50 0.00 3.91
2097 2415 2.665008 TAGCTGGGTCGCATGCATCC 62.665 60.000 19.57 17.95 0.00 3.51
2098 2416 2.124612 CTGGGTCGCATGCATCCA 60.125 61.111 23.45 20.55 0.00 3.41
2099 2417 1.527611 CTGGGTCGCATGCATCCAT 60.528 57.895 23.45 0.00 0.00 3.41
2100 2418 0.250424 CTGGGTCGCATGCATCCATA 60.250 55.000 23.45 13.93 0.00 2.74
2101 2419 0.250424 TGGGTCGCATGCATCCATAG 60.250 55.000 23.45 5.48 0.00 2.23
2102 2420 0.957395 GGGTCGCATGCATCCATAGG 60.957 60.000 23.45 4.81 0.00 2.57
2103 2421 1.580845 GGTCGCATGCATCCATAGGC 61.581 60.000 19.57 0.00 0.00 3.93
2104 2422 1.302752 TCGCATGCATCCATAGGCC 60.303 57.895 19.57 0.00 0.00 5.19
2105 2423 1.303074 CGCATGCATCCATAGGCCT 60.303 57.895 19.57 11.78 0.00 5.19
2106 2424 0.036105 CGCATGCATCCATAGGCCTA 60.036 55.000 16.60 16.60 0.00 3.93
2107 2425 1.457346 GCATGCATCCATAGGCCTAC 58.543 55.000 16.61 1.17 0.00 3.18
2108 2426 1.952367 GCATGCATCCATAGGCCTACC 60.952 57.143 16.61 0.16 0.00 3.18
2109 2427 0.995024 ATGCATCCATAGGCCTACCC 59.005 55.000 16.61 0.53 36.11 3.69
2110 2428 1.296715 GCATCCATAGGCCTACCCG 59.703 63.158 16.61 6.67 39.21 5.28
2111 2429 1.481056 GCATCCATAGGCCTACCCGT 61.481 60.000 16.61 0.00 39.21 5.28
2112 2430 1.933021 CATCCATAGGCCTACCCGTA 58.067 55.000 16.61 0.00 39.21 4.02
2113 2431 1.825474 CATCCATAGGCCTACCCGTAG 59.175 57.143 16.61 0.00 39.21 3.51
2131 2449 5.219226 CGTAGGTATTCCGCTATCAGTAG 57.781 47.826 0.00 0.00 39.05 2.57
2132 2450 7.378008 CCGTAGGTATTCCGCTATCAGTAGC 62.378 52.000 0.00 0.00 46.23 3.58
2140 2458 1.710816 GCTATCAGTAGCCCCTGAGT 58.289 55.000 8.67 1.47 46.14 3.41
2141 2459 2.043227 GCTATCAGTAGCCCCTGAGTT 58.957 52.381 8.67 0.00 46.14 3.01
2142 2460 2.036604 GCTATCAGTAGCCCCTGAGTTC 59.963 54.545 8.67 0.00 46.14 3.01
2143 2461 1.115467 ATCAGTAGCCCCTGAGTTCG 58.885 55.000 8.67 0.00 44.25 3.95
2144 2462 0.251653 TCAGTAGCCCCTGAGTTCGT 60.252 55.000 0.00 0.00 36.57 3.85
2145 2463 0.173708 CAGTAGCCCCTGAGTTCGTC 59.826 60.000 0.00 0.00 34.23 4.20
2146 2464 0.251653 AGTAGCCCCTGAGTTCGTCA 60.252 55.000 0.00 0.00 0.00 4.35
2147 2465 0.606604 GTAGCCCCTGAGTTCGTCAA 59.393 55.000 0.00 0.00 33.60 3.18
2148 2466 0.895530 TAGCCCCTGAGTTCGTCAAG 59.104 55.000 0.00 0.00 33.60 3.02
2149 2467 1.376037 GCCCCTGAGTTCGTCAAGG 60.376 63.158 0.00 0.00 36.60 3.61
2150 2468 2.058675 CCCCTGAGTTCGTCAAGGT 58.941 57.895 0.00 0.00 35.17 3.50
2151 2469 1.263356 CCCCTGAGTTCGTCAAGGTA 58.737 55.000 0.00 0.00 35.17 3.08
2152 2470 1.831736 CCCCTGAGTTCGTCAAGGTAT 59.168 52.381 0.00 0.00 35.17 2.73
2153 2471 2.159085 CCCCTGAGTTCGTCAAGGTATC 60.159 54.545 0.00 0.00 35.17 2.24
2154 2472 2.479730 CCCTGAGTTCGTCAAGGTATCG 60.480 54.545 0.00 0.00 32.55 2.92
2155 2473 2.186076 CTGAGTTCGTCAAGGTATCGC 58.814 52.381 0.00 0.00 33.60 4.58
2156 2474 1.189403 GAGTTCGTCAAGGTATCGCG 58.811 55.000 0.00 0.00 0.00 5.87
2157 2475 0.179145 AGTTCGTCAAGGTATCGCGG 60.179 55.000 6.13 0.00 0.00 6.46
2158 2476 0.457337 GTTCGTCAAGGTATCGCGGT 60.457 55.000 6.13 0.00 0.00 5.68
2159 2477 1.093972 TTCGTCAAGGTATCGCGGTA 58.906 50.000 6.13 0.00 0.00 4.02
2160 2478 0.659427 TCGTCAAGGTATCGCGGTAG 59.341 55.000 6.13 0.00 0.00 3.18
2161 2479 0.379669 CGTCAAGGTATCGCGGTAGT 59.620 55.000 6.13 0.00 0.00 2.73
2162 2480 1.599071 CGTCAAGGTATCGCGGTAGTA 59.401 52.381 6.13 0.00 0.00 1.82
2163 2481 2.032054 CGTCAAGGTATCGCGGTAGTAA 59.968 50.000 6.13 0.00 0.00 2.24
2164 2482 3.366719 GTCAAGGTATCGCGGTAGTAAC 58.633 50.000 6.13 0.00 0.00 2.50
2165 2483 3.065925 GTCAAGGTATCGCGGTAGTAACT 59.934 47.826 6.13 0.00 0.00 2.24
2166 2484 4.273480 GTCAAGGTATCGCGGTAGTAACTA 59.727 45.833 6.13 0.00 0.00 2.24
2167 2485 4.881273 TCAAGGTATCGCGGTAGTAACTAA 59.119 41.667 6.13 0.00 0.00 2.24
2168 2486 4.820284 AGGTATCGCGGTAGTAACTAAC 57.180 45.455 6.13 0.00 0.00 2.34
2169 2487 4.455606 AGGTATCGCGGTAGTAACTAACT 58.544 43.478 6.13 0.00 42.62 2.24
2170 2488 4.274459 AGGTATCGCGGTAGTAACTAACTG 59.726 45.833 6.13 0.00 39.39 3.16
2171 2489 3.705043 ATCGCGGTAGTAACTAACTGG 57.295 47.619 6.13 0.00 39.39 4.00
2172 2490 1.745087 TCGCGGTAGTAACTAACTGGG 59.255 52.381 6.13 0.00 39.39 4.45
2173 2491 1.800286 CGCGGTAGTAACTAACTGGGC 60.800 57.143 0.00 0.00 39.39 5.36
2174 2492 1.479730 GCGGTAGTAACTAACTGGGCT 59.520 52.381 0.00 0.00 39.39 5.19
2175 2493 2.480932 GCGGTAGTAACTAACTGGGCTC 60.481 54.545 0.00 0.00 39.39 4.70
2176 2494 3.022406 CGGTAGTAACTAACTGGGCTCT 58.978 50.000 0.00 0.00 39.39 4.09
2177 2495 3.181489 CGGTAGTAACTAACTGGGCTCTG 60.181 52.174 0.00 0.00 39.39 3.35
2178 2496 4.021916 GGTAGTAACTAACTGGGCTCTGA 58.978 47.826 0.00 0.00 39.39 3.27
2179 2497 4.142204 GGTAGTAACTAACTGGGCTCTGAC 60.142 50.000 0.00 0.00 39.39 3.51
2180 2498 3.507411 AGTAACTAACTGGGCTCTGACA 58.493 45.455 0.00 0.00 36.93 3.58
2181 2499 3.901844 AGTAACTAACTGGGCTCTGACAA 59.098 43.478 0.00 0.00 36.93 3.18
2182 2500 3.857157 AACTAACTGGGCTCTGACAAA 57.143 42.857 0.00 0.00 0.00 2.83
2183 2501 3.409026 ACTAACTGGGCTCTGACAAAG 57.591 47.619 0.00 0.00 0.00 2.77
2184 2502 2.972713 ACTAACTGGGCTCTGACAAAGA 59.027 45.455 0.00 0.00 0.00 2.52
2185 2503 3.391296 ACTAACTGGGCTCTGACAAAGAA 59.609 43.478 0.00 0.00 33.37 2.52
2186 2504 2.262423 ACTGGGCTCTGACAAAGAAC 57.738 50.000 0.00 0.00 33.37 3.01
2187 2505 1.490490 ACTGGGCTCTGACAAAGAACA 59.510 47.619 0.00 0.00 33.37 3.18
2188 2506 2.107204 ACTGGGCTCTGACAAAGAACAT 59.893 45.455 0.00 0.00 33.37 2.71
2189 2507 3.152341 CTGGGCTCTGACAAAGAACATT 58.848 45.455 0.00 0.00 33.37 2.71
2190 2508 3.149196 TGGGCTCTGACAAAGAACATTC 58.851 45.455 0.00 0.00 33.37 2.67
2191 2509 3.181440 TGGGCTCTGACAAAGAACATTCT 60.181 43.478 0.00 0.00 39.74 2.40
2192 2510 3.190118 GGGCTCTGACAAAGAACATTCTG 59.810 47.826 0.00 0.00 37.65 3.02
2193 2511 4.067896 GGCTCTGACAAAGAACATTCTGA 58.932 43.478 0.00 0.00 37.65 3.27
2194 2512 4.083590 GGCTCTGACAAAGAACATTCTGAC 60.084 45.833 0.00 0.00 37.65 3.51
2195 2513 4.754114 GCTCTGACAAAGAACATTCTGACT 59.246 41.667 0.00 0.00 37.65 3.41
2196 2514 5.928839 GCTCTGACAAAGAACATTCTGACTA 59.071 40.000 0.00 0.00 37.65 2.59
2197 2515 6.090628 GCTCTGACAAAGAACATTCTGACTAG 59.909 42.308 0.00 0.00 37.65 2.57
2198 2516 7.055667 TCTGACAAAGAACATTCTGACTAGT 57.944 36.000 0.00 0.00 37.65 2.57
2199 2517 7.148641 TCTGACAAAGAACATTCTGACTAGTC 58.851 38.462 16.32 16.32 37.65 2.59
2200 2518 5.920840 TGACAAAGAACATTCTGACTAGTCG 59.079 40.000 17.85 12.43 37.65 4.18
2201 2519 4.686554 ACAAAGAACATTCTGACTAGTCGC 59.313 41.667 17.85 0.00 37.65 5.19
2202 2520 3.512033 AGAACATTCTGACTAGTCGCC 57.488 47.619 17.85 0.00 35.89 5.54
2203 2521 2.159366 AGAACATTCTGACTAGTCGCCG 60.159 50.000 17.85 9.02 35.89 6.46
2204 2522 0.456221 ACATTCTGACTAGTCGCCGG 59.544 55.000 17.85 0.00 0.00 6.13
2205 2523 0.738975 CATTCTGACTAGTCGCCGGA 59.261 55.000 17.85 10.25 0.00 5.14
2206 2524 1.025812 ATTCTGACTAGTCGCCGGAG 58.974 55.000 17.85 0.00 0.00 4.63
2207 2525 0.322277 TTCTGACTAGTCGCCGGAGT 60.322 55.000 17.85 0.00 0.00 3.85
2208 2526 0.743701 TCTGACTAGTCGCCGGAGTC 60.744 60.000 17.85 9.75 40.07 3.36
2209 2527 2.037913 CTGACTAGTCGCCGGAGTCG 62.038 65.000 17.85 0.00 42.10 4.18
2219 2537 2.432628 CGGAGTCGGAAGTGCCAC 60.433 66.667 0.00 0.00 35.94 5.01
2220 2538 2.932234 CGGAGTCGGAAGTGCCACT 61.932 63.158 0.00 0.00 35.94 4.00
2221 2539 1.371558 GGAGTCGGAAGTGCCACTT 59.628 57.895 10.45 10.45 41.95 3.16
2222 2540 0.951040 GGAGTCGGAAGTGCCACTTG 60.951 60.000 16.14 1.32 38.80 3.16
2223 2541 1.569479 GAGTCGGAAGTGCCACTTGC 61.569 60.000 16.14 17.21 42.22 4.01
2224 2542 1.598130 GTCGGAAGTGCCACTTGCT 60.598 57.895 23.86 0.00 43.27 3.91
2225 2543 1.597854 TCGGAAGTGCCACTTGCTG 60.598 57.895 23.86 17.58 43.27 4.41
2226 2544 2.620112 CGGAAGTGCCACTTGCTGG 61.620 63.158 23.86 8.32 43.27 4.85
2227 2545 1.529244 GGAAGTGCCACTTGCTGGT 60.529 57.895 20.31 0.00 42.35 4.00
2228 2546 1.109323 GGAAGTGCCACTTGCTGGTT 61.109 55.000 20.31 0.00 42.35 3.67
2229 2547 0.031178 GAAGTGCCACTTGCTGGTTG 59.969 55.000 16.14 0.00 42.99 3.77
2230 2548 0.395586 AAGTGCCACTTGCTGGTTGA 60.396 50.000 9.77 0.00 42.99 3.18
2231 2549 0.178981 AGTGCCACTTGCTGGTTGAT 60.179 50.000 0.00 0.00 42.99 2.57
2232 2550 0.675633 GTGCCACTTGCTGGTTGATT 59.324 50.000 0.00 0.00 42.99 2.57
2233 2551 0.675083 TGCCACTTGCTGGTTGATTG 59.325 50.000 0.00 0.00 42.99 2.67
2234 2552 0.037975 GCCACTTGCTGGTTGATTGG 60.038 55.000 0.00 0.00 42.99 3.16
2235 2553 0.604578 CCACTTGCTGGTTGATTGGG 59.395 55.000 0.00 0.00 34.90 4.12
2236 2554 1.619654 CACTTGCTGGTTGATTGGGA 58.380 50.000 0.00 0.00 0.00 4.37
2237 2555 1.542915 CACTTGCTGGTTGATTGGGAG 59.457 52.381 0.00 0.00 0.00 4.30
2238 2556 1.425066 ACTTGCTGGTTGATTGGGAGA 59.575 47.619 0.00 0.00 0.00 3.71
2239 2557 2.042162 ACTTGCTGGTTGATTGGGAGAT 59.958 45.455 0.00 0.00 0.00 2.75
2240 2558 2.425143 TGCTGGTTGATTGGGAGATC 57.575 50.000 0.00 0.00 0.00 2.75
2241 2559 1.918262 TGCTGGTTGATTGGGAGATCT 59.082 47.619 0.00 0.00 0.00 2.75
2242 2560 2.309755 TGCTGGTTGATTGGGAGATCTT 59.690 45.455 0.00 0.00 0.00 2.40
2243 2561 2.686915 GCTGGTTGATTGGGAGATCTTG 59.313 50.000 0.00 0.00 0.00 3.02
2244 2562 3.285484 CTGGTTGATTGGGAGATCTTGG 58.715 50.000 0.00 0.00 0.00 3.61
2245 2563 2.649312 TGGTTGATTGGGAGATCTTGGT 59.351 45.455 0.00 0.00 0.00 3.67
2246 2564 3.019564 GGTTGATTGGGAGATCTTGGTG 58.980 50.000 0.00 0.00 0.00 4.17
2247 2565 3.019564 GTTGATTGGGAGATCTTGGTGG 58.980 50.000 0.00 0.00 0.00 4.61
2248 2566 2.561187 TGATTGGGAGATCTTGGTGGA 58.439 47.619 0.00 0.00 0.00 4.02
2249 2567 2.239654 TGATTGGGAGATCTTGGTGGAC 59.760 50.000 0.00 0.00 0.00 4.02
2250 2568 2.044793 TTGGGAGATCTTGGTGGACT 57.955 50.000 0.00 0.00 0.00 3.85
2251 2569 1.573108 TGGGAGATCTTGGTGGACTC 58.427 55.000 0.00 0.00 0.00 3.36
2252 2570 1.203300 TGGGAGATCTTGGTGGACTCA 60.203 52.381 0.00 0.00 0.00 3.41
2253 2571 1.909302 GGGAGATCTTGGTGGACTCAA 59.091 52.381 0.00 0.00 0.00 3.02
2254 2572 2.305927 GGGAGATCTTGGTGGACTCAAA 59.694 50.000 0.00 0.00 0.00 2.69
2255 2573 3.054065 GGGAGATCTTGGTGGACTCAAAT 60.054 47.826 0.00 0.00 0.00 2.32
2256 2574 3.944015 GGAGATCTTGGTGGACTCAAATG 59.056 47.826 0.00 0.00 0.00 2.32
2257 2575 4.566488 GGAGATCTTGGTGGACTCAAATGT 60.566 45.833 0.00 0.00 0.00 2.71
2258 2576 4.990526 AGATCTTGGTGGACTCAAATGTT 58.009 39.130 0.00 0.00 0.00 2.71
2259 2577 5.006386 AGATCTTGGTGGACTCAAATGTTC 58.994 41.667 0.00 0.00 0.00 3.18
2260 2578 4.163441 TCTTGGTGGACTCAAATGTTCA 57.837 40.909 0.00 0.00 0.00 3.18
2261 2579 4.728772 TCTTGGTGGACTCAAATGTTCAT 58.271 39.130 0.00 0.00 0.00 2.57
2262 2580 4.520111 TCTTGGTGGACTCAAATGTTCATG 59.480 41.667 0.00 0.00 0.00 3.07
2263 2581 2.557924 TGGTGGACTCAAATGTTCATGC 59.442 45.455 0.00 0.00 0.00 4.06
2264 2582 2.094545 GGTGGACTCAAATGTTCATGCC 60.095 50.000 0.00 0.00 0.00 4.40
2265 2583 2.821969 GTGGACTCAAATGTTCATGCCT 59.178 45.455 0.00 0.00 0.00 4.75
2266 2584 3.256631 GTGGACTCAAATGTTCATGCCTT 59.743 43.478 0.00 0.00 0.00 4.35
2267 2585 3.507233 TGGACTCAAATGTTCATGCCTTC 59.493 43.478 0.00 0.00 0.00 3.46
2268 2586 3.119352 GGACTCAAATGTTCATGCCTTCC 60.119 47.826 0.00 0.00 0.00 3.46
2269 2587 3.499338 ACTCAAATGTTCATGCCTTCCA 58.501 40.909 0.00 0.00 0.00 3.53
2270 2588 3.508793 ACTCAAATGTTCATGCCTTCCAG 59.491 43.478 0.00 0.00 0.00 3.86
2271 2589 3.760151 CTCAAATGTTCATGCCTTCCAGA 59.240 43.478 0.00 0.00 0.00 3.86
2272 2590 3.760151 TCAAATGTTCATGCCTTCCAGAG 59.240 43.478 0.00 0.00 0.00 3.35
2281 2599 2.124942 CTTCCAGAGGCGAAGGGC 60.125 66.667 0.00 0.00 42.51 5.19
2282 2600 2.927856 TTCCAGAGGCGAAGGGCA 60.928 61.111 0.00 0.00 46.16 5.36
2283 2601 2.469465 CTTCCAGAGGCGAAGGGCAA 62.469 60.000 0.00 0.00 46.16 4.52
2284 2602 2.437359 CCAGAGGCGAAGGGCAAG 60.437 66.667 0.00 0.00 46.16 4.01
2285 2603 3.130160 CAGAGGCGAAGGGCAAGC 61.130 66.667 0.00 0.00 46.16 4.01
2286 2604 3.640407 AGAGGCGAAGGGCAAGCA 61.640 61.111 0.00 0.00 46.16 3.91
2287 2605 2.439156 GAGGCGAAGGGCAAGCAT 60.439 61.111 0.00 0.00 46.16 3.79
2288 2606 2.439156 AGGCGAAGGGCAAGCATC 60.439 61.111 0.00 0.00 46.16 3.91
2289 2607 2.439156 GGCGAAGGGCAAGCATCT 60.439 61.111 0.00 0.00 46.16 2.90
2290 2608 2.768492 GGCGAAGGGCAAGCATCTG 61.768 63.158 0.00 0.00 46.16 2.90
2291 2609 1.746615 GCGAAGGGCAAGCATCTGA 60.747 57.895 0.00 0.00 42.87 3.27
2292 2610 1.099879 GCGAAGGGCAAGCATCTGAT 61.100 55.000 0.00 0.00 42.87 2.90
2293 2611 1.386533 CGAAGGGCAAGCATCTGATT 58.613 50.000 0.00 0.00 0.00 2.57
2294 2612 1.065102 CGAAGGGCAAGCATCTGATTG 59.935 52.381 3.88 3.88 43.64 2.67
2295 2613 1.407979 GAAGGGCAAGCATCTGATTGG 59.592 52.381 9.91 0.00 41.34 3.16
2296 2614 0.627451 AGGGCAAGCATCTGATTGGA 59.373 50.000 9.91 0.00 41.34 3.53
2297 2615 1.006281 AGGGCAAGCATCTGATTGGAA 59.994 47.619 9.91 0.00 41.34 3.53
2298 2616 1.826720 GGGCAAGCATCTGATTGGAAA 59.173 47.619 9.91 0.00 41.34 3.13
2299 2617 2.234414 GGGCAAGCATCTGATTGGAAAA 59.766 45.455 9.91 0.00 41.34 2.29
2300 2618 3.306919 GGGCAAGCATCTGATTGGAAAAA 60.307 43.478 9.91 0.00 41.34 1.94
2333 2651 9.482627 GGTAATACATAACTTGATCTCTTCAGG 57.517 37.037 0.00 0.00 37.45 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.033407 CGATTGCATGCTTCGAAGGTAG 60.033 50.000 28.26 2.04 34.92 3.18
41 42 0.819259 CCGAACCATCCCGATTGCAT 60.819 55.000 0.00 0.00 0.00 3.96
162 163 2.495155 AACATGTACTGCTGCCATCA 57.505 45.000 0.00 0.00 0.00 3.07
168 169 5.220472 CGTCCAAGATAAACATGTACTGCTG 60.220 44.000 0.00 0.00 0.00 4.41
171 172 6.100004 ACTCGTCCAAGATAAACATGTACTG 58.900 40.000 0.00 0.00 0.00 2.74
238 240 1.913951 TACCTCTAGCGTCGACCCCA 61.914 60.000 10.58 0.00 0.00 4.96
249 295 6.395629 TCACCTTCAAAACGAATACCTCTAG 58.604 40.000 0.00 0.00 31.69 2.43
275 444 6.019779 CCAAAGGGATTTGTATTCGTCAAA 57.980 37.500 0.57 0.00 38.77 2.69
305 474 3.773119 GTCTAGAGACCCCAAATACCACA 59.227 47.826 0.00 0.00 39.07 4.17
312 481 1.628846 GGCAAGTCTAGAGACCCCAAA 59.371 52.381 6.05 0.00 45.85 3.28
323 492 2.221906 GAACGAGGCCGGCAAGTCTA 62.222 60.000 30.85 0.00 40.78 2.59
324 493 3.591254 GAACGAGGCCGGCAAGTCT 62.591 63.158 30.85 16.56 40.78 3.24
377 546 3.367932 ACGATTTCATACTGCAACGACAG 59.632 43.478 0.00 0.00 43.59 3.51
432 651 1.601903 TGTACGTCTACGACCGTGTTT 59.398 47.619 9.86 0.00 43.02 2.83
475 695 2.425592 CGCTCAACCCTGTGGACA 59.574 61.111 0.00 0.00 34.81 4.02
558 778 0.320247 CCTTCGTCTTCTGCTGCTGT 60.320 55.000 0.00 0.00 0.00 4.40
961 1194 1.755008 GCGTCCTGCTACCTCCTCT 60.755 63.158 0.00 0.00 41.73 3.69
1087 1337 4.335647 CTTCCTGTGCCACGGCCT 62.336 66.667 5.42 0.00 41.09 5.19
1091 1341 2.594303 TTGCCTTCCTGTGCCACG 60.594 61.111 0.00 0.00 0.00 4.94
1092 1342 2.908073 CGTTGCCTTCCTGTGCCAC 61.908 63.158 0.00 0.00 0.00 5.01
1093 1343 2.594303 CGTTGCCTTCCTGTGCCA 60.594 61.111 0.00 0.00 0.00 4.92
1094 1344 4.043200 GCGTTGCCTTCCTGTGCC 62.043 66.667 0.00 0.00 0.00 5.01
1095 1345 4.389576 CGCGTTGCCTTCCTGTGC 62.390 66.667 0.00 0.00 0.00 4.57
1098 1348 3.121030 CTCCGCGTTGCCTTCCTG 61.121 66.667 4.92 0.00 0.00 3.86
1223 1473 1.847506 CCCCATCCCCATCGATCCA 60.848 63.158 0.00 0.00 0.00 3.41
1468 1749 2.668144 TTTTTGTGAGTCCGGGGAAT 57.332 45.000 0.00 0.00 0.00 3.01
1509 1790 8.415950 TTTAATCTTTCAATCTTGGCCACTTA 57.584 30.769 3.88 0.00 0.00 2.24
1512 1793 7.818930 TGAATTTAATCTTTCAATCTTGGCCAC 59.181 33.333 3.88 0.00 0.00 5.01
1561 1844 7.039784 CCAAACCTCACTTCCTATTCAAATCAA 60.040 37.037 0.00 0.00 0.00 2.57
1664 1975 4.553330 TGCCTATTCCTCTTCGAGTTTT 57.447 40.909 0.00 0.00 0.00 2.43
1778 2089 3.065786 CGAGGGAATTCACATGGTGATTG 59.934 47.826 11.02 0.00 42.40 2.67
1915 2231 9.820229 GAGATTCGTTGTGTGATTTGTTTTATA 57.180 29.630 0.00 0.00 0.00 0.98
1917 2233 7.698628 TGAGATTCGTTGTGTGATTTGTTTTA 58.301 30.769 0.00 0.00 0.00 1.52
1942 2258 0.326264 AGATGCCTTCCAGCGTTTCT 59.674 50.000 0.00 0.00 34.32 2.52
1948 2266 0.394080 AGCTTCAGATGCCTTCCAGC 60.394 55.000 4.67 0.00 0.00 4.85
1989 2307 6.536224 CCATCAAAATTACAGCCCAAAAGATC 59.464 38.462 0.00 0.00 0.00 2.75
1990 2308 6.408869 CCATCAAAATTACAGCCCAAAAGAT 58.591 36.000 0.00 0.00 0.00 2.40
1991 2309 5.279910 CCCATCAAAATTACAGCCCAAAAGA 60.280 40.000 0.00 0.00 0.00 2.52
1992 2310 4.937015 CCCATCAAAATTACAGCCCAAAAG 59.063 41.667 0.00 0.00 0.00 2.27
1993 2311 4.805609 GCCCATCAAAATTACAGCCCAAAA 60.806 41.667 0.00 0.00 0.00 2.44
1994 2312 3.307339 GCCCATCAAAATTACAGCCCAAA 60.307 43.478 0.00 0.00 0.00 3.28
1995 2313 2.235898 GCCCATCAAAATTACAGCCCAA 59.764 45.455 0.00 0.00 0.00 4.12
1996 2314 1.830477 GCCCATCAAAATTACAGCCCA 59.170 47.619 0.00 0.00 0.00 5.36
1997 2315 2.110578 AGCCCATCAAAATTACAGCCC 58.889 47.619 0.00 0.00 0.00 5.19
1998 2316 3.893326 AAGCCCATCAAAATTACAGCC 57.107 42.857 0.00 0.00 0.00 4.85
1999 2317 5.125417 TCACTAAGCCCATCAAAATTACAGC 59.875 40.000 0.00 0.00 0.00 4.40
2000 2318 6.183360 CCTCACTAAGCCCATCAAAATTACAG 60.183 42.308 0.00 0.00 0.00 2.74
2001 2319 5.652014 CCTCACTAAGCCCATCAAAATTACA 59.348 40.000 0.00 0.00 0.00 2.41
2002 2320 5.885912 TCCTCACTAAGCCCATCAAAATTAC 59.114 40.000 0.00 0.00 0.00 1.89
2003 2321 6.073447 TCCTCACTAAGCCCATCAAAATTA 57.927 37.500 0.00 0.00 0.00 1.40
2004 2322 4.934356 TCCTCACTAAGCCCATCAAAATT 58.066 39.130 0.00 0.00 0.00 1.82
2005 2323 4.591321 TCCTCACTAAGCCCATCAAAAT 57.409 40.909 0.00 0.00 0.00 1.82
2006 2324 4.079253 GTTCCTCACTAAGCCCATCAAAA 58.921 43.478 0.00 0.00 0.00 2.44
2007 2325 3.561313 GGTTCCTCACTAAGCCCATCAAA 60.561 47.826 0.00 0.00 0.00 2.69
2008 2326 2.026262 GGTTCCTCACTAAGCCCATCAA 60.026 50.000 0.00 0.00 0.00 2.57
2009 2327 1.559682 GGTTCCTCACTAAGCCCATCA 59.440 52.381 0.00 0.00 0.00 3.07
2010 2328 1.134068 GGGTTCCTCACTAAGCCCATC 60.134 57.143 0.00 0.00 38.32 3.51
2011 2329 0.919710 GGGTTCCTCACTAAGCCCAT 59.080 55.000 0.00 0.00 38.32 4.00
2012 2330 2.383608 GGGTTCCTCACTAAGCCCA 58.616 57.895 0.00 0.00 38.32 5.36
2014 2332 0.992695 AAGGGGTTCCTCACTAAGCC 59.007 55.000 0.00 0.00 44.07 4.35
2015 2333 1.340114 CCAAGGGGTTCCTCACTAAGC 60.340 57.143 0.00 0.00 44.07 3.09
2016 2334 1.340114 GCCAAGGGGTTCCTCACTAAG 60.340 57.143 0.00 0.00 44.07 2.18
2017 2335 0.696501 GCCAAGGGGTTCCTCACTAA 59.303 55.000 0.00 0.00 44.07 2.24
2018 2336 1.205460 GGCCAAGGGGTTCCTCACTA 61.205 60.000 0.00 0.00 44.07 2.74
2019 2337 2.539081 GGCCAAGGGGTTCCTCACT 61.539 63.158 0.00 0.00 44.07 3.41
2020 2338 2.035783 GGCCAAGGGGTTCCTCAC 59.964 66.667 0.00 0.00 44.07 3.51
2021 2339 3.264845 GGGCCAAGGGGTTCCTCA 61.265 66.667 4.39 0.00 44.07 3.86
2022 2340 2.168272 AATGGGCCAAGGGGTTCCTC 62.168 60.000 11.89 0.00 44.07 3.71
2024 2342 1.989508 CAATGGGCCAAGGGGTTCC 60.990 63.158 11.89 0.00 36.17 3.62
2025 2343 0.835971 AACAATGGGCCAAGGGGTTC 60.836 55.000 11.89 0.00 36.17 3.62
2026 2344 0.835971 GAACAATGGGCCAAGGGGTT 60.836 55.000 11.89 12.68 36.17 4.11
2027 2345 1.229177 GAACAATGGGCCAAGGGGT 60.229 57.895 11.89 0.28 36.17 4.95
2028 2346 0.545071 AAGAACAATGGGCCAAGGGG 60.545 55.000 11.89 2.57 37.18 4.79
2029 2347 1.002315 CAAAGAACAATGGGCCAAGGG 59.998 52.381 11.89 5.50 0.00 3.95
2030 2348 1.002315 CCAAAGAACAATGGGCCAAGG 59.998 52.381 11.89 8.49 32.87 3.61
2031 2349 2.460757 CCAAAGAACAATGGGCCAAG 57.539 50.000 11.89 9.34 32.87 3.61
2037 2355 4.700213 AGAATACGACCCAAAGAACAATGG 59.300 41.667 0.00 0.00 36.42 3.16
2038 2356 5.880054 AGAATACGACCCAAAGAACAATG 57.120 39.130 0.00 0.00 0.00 2.82
2039 2357 6.001460 TCAAGAATACGACCCAAAGAACAAT 58.999 36.000 0.00 0.00 0.00 2.71
2040 2358 5.369833 TCAAGAATACGACCCAAAGAACAA 58.630 37.500 0.00 0.00 0.00 2.83
2041 2359 4.963373 TCAAGAATACGACCCAAAGAACA 58.037 39.130 0.00 0.00 0.00 3.18
2042 2360 5.163754 CCATCAAGAATACGACCCAAAGAAC 60.164 44.000 0.00 0.00 0.00 3.01
2043 2361 4.941263 CCATCAAGAATACGACCCAAAGAA 59.059 41.667 0.00 0.00 0.00 2.52
2044 2362 4.513442 CCATCAAGAATACGACCCAAAGA 58.487 43.478 0.00 0.00 0.00 2.52
2045 2363 3.627577 CCCATCAAGAATACGACCCAAAG 59.372 47.826 0.00 0.00 0.00 2.77
2046 2364 3.616219 CCCATCAAGAATACGACCCAAA 58.384 45.455 0.00 0.00 0.00 3.28
2047 2365 2.682563 GCCCATCAAGAATACGACCCAA 60.683 50.000 0.00 0.00 0.00 4.12
2048 2366 1.134220 GCCCATCAAGAATACGACCCA 60.134 52.381 0.00 0.00 0.00 4.51
2049 2367 1.594331 GCCCATCAAGAATACGACCC 58.406 55.000 0.00 0.00 0.00 4.46
2050 2368 1.141053 AGGCCCATCAAGAATACGACC 59.859 52.381 0.00 0.00 0.00 4.79
2051 2369 2.213499 CAGGCCCATCAAGAATACGAC 58.787 52.381 0.00 0.00 0.00 4.34
2052 2370 1.140852 CCAGGCCCATCAAGAATACGA 59.859 52.381 0.00 0.00 0.00 3.43
2053 2371 1.134098 ACCAGGCCCATCAAGAATACG 60.134 52.381 0.00 0.00 0.00 3.06
2054 2372 2.173569 AGACCAGGCCCATCAAGAATAC 59.826 50.000 0.00 0.00 0.00 1.89
2055 2373 2.492025 AGACCAGGCCCATCAAGAATA 58.508 47.619 0.00 0.00 0.00 1.75
2056 2374 1.302907 AGACCAGGCCCATCAAGAAT 58.697 50.000 0.00 0.00 0.00 2.40
2057 2375 1.075601 AAGACCAGGCCCATCAAGAA 58.924 50.000 0.00 0.00 0.00 2.52
2058 2376 1.075601 AAAGACCAGGCCCATCAAGA 58.924 50.000 0.00 0.00 0.00 3.02
2059 2377 1.928868 AAAAGACCAGGCCCATCAAG 58.071 50.000 0.00 0.00 0.00 3.02
2060 2378 2.883888 GCTAAAAGACCAGGCCCATCAA 60.884 50.000 0.00 0.00 0.00 2.57
2061 2379 1.340991 GCTAAAAGACCAGGCCCATCA 60.341 52.381 0.00 0.00 0.00 3.07
2062 2380 1.064389 AGCTAAAAGACCAGGCCCATC 60.064 52.381 0.00 0.00 0.00 3.51
2063 2381 1.002857 AGCTAAAAGACCAGGCCCAT 58.997 50.000 0.00 0.00 0.00 4.00
2064 2382 0.038166 CAGCTAAAAGACCAGGCCCA 59.962 55.000 0.00 0.00 0.00 5.36
2065 2383 0.681243 CCAGCTAAAAGACCAGGCCC 60.681 60.000 0.00 0.00 0.00 5.80
2066 2384 0.681243 CCCAGCTAAAAGACCAGGCC 60.681 60.000 0.00 0.00 0.00 5.19
2067 2385 0.038310 ACCCAGCTAAAAGACCAGGC 59.962 55.000 0.00 0.00 0.00 4.85
2068 2386 1.676014 CGACCCAGCTAAAAGACCAGG 60.676 57.143 0.00 0.00 0.00 4.45
2069 2387 1.726853 CGACCCAGCTAAAAGACCAG 58.273 55.000 0.00 0.00 0.00 4.00
2070 2388 0.321298 GCGACCCAGCTAAAAGACCA 60.321 55.000 0.00 0.00 0.00 4.02
2071 2389 0.321298 TGCGACCCAGCTAAAAGACC 60.321 55.000 0.00 0.00 38.13 3.85
2072 2390 1.398390 CATGCGACCCAGCTAAAAGAC 59.602 52.381 0.00 0.00 38.13 3.01
2073 2391 1.737838 CATGCGACCCAGCTAAAAGA 58.262 50.000 0.00 0.00 38.13 2.52
2074 2392 0.099436 GCATGCGACCCAGCTAAAAG 59.901 55.000 0.00 0.00 38.13 2.27
2075 2393 0.607762 TGCATGCGACCCAGCTAAAA 60.608 50.000 14.09 0.00 38.13 1.52
2076 2394 0.394216 ATGCATGCGACCCAGCTAAA 60.394 50.000 14.09 0.00 38.13 1.85
2077 2395 0.815213 GATGCATGCGACCCAGCTAA 60.815 55.000 14.09 0.00 38.13 3.09
2078 2396 1.227645 GATGCATGCGACCCAGCTA 60.228 57.895 14.09 0.00 38.13 3.32
2079 2397 2.515523 GATGCATGCGACCCAGCT 60.516 61.111 14.09 0.00 38.13 4.24
2080 2398 3.589881 GGATGCATGCGACCCAGC 61.590 66.667 14.09 0.00 37.71 4.85
2081 2399 0.250424 TATGGATGCATGCGACCCAG 60.250 55.000 23.51 0.00 0.00 4.45
2082 2400 0.250424 CTATGGATGCATGCGACCCA 60.250 55.000 22.19 22.19 0.00 4.51
2083 2401 0.957395 CCTATGGATGCATGCGACCC 60.957 60.000 23.66 18.95 0.00 4.46
2084 2402 1.580845 GCCTATGGATGCATGCGACC 61.581 60.000 21.10 21.10 0.00 4.79
2085 2403 1.580845 GGCCTATGGATGCATGCGAC 61.581 60.000 14.09 9.26 0.00 5.19
2086 2404 1.302752 GGCCTATGGATGCATGCGA 60.303 57.895 14.09 2.48 0.00 5.10
2087 2405 0.036105 TAGGCCTATGGATGCATGCG 60.036 55.000 8.91 0.00 0.00 4.73
2088 2406 1.457346 GTAGGCCTATGGATGCATGC 58.543 55.000 17.38 11.82 0.00 4.06
2089 2407 1.340405 GGGTAGGCCTATGGATGCATG 60.340 57.143 17.38 0.01 34.45 4.06
2090 2408 0.995024 GGGTAGGCCTATGGATGCAT 59.005 55.000 17.38 4.68 34.45 3.96
2091 2409 1.480212 CGGGTAGGCCTATGGATGCA 61.480 60.000 17.38 0.00 34.45 3.96
2092 2410 1.296715 CGGGTAGGCCTATGGATGC 59.703 63.158 17.38 0.98 34.45 3.91
2093 2411 1.825474 CTACGGGTAGGCCTATGGATG 59.175 57.143 17.38 7.29 34.45 3.51
2094 2412 1.273098 CCTACGGGTAGGCCTATGGAT 60.273 57.143 17.38 5.30 45.36 3.41
2095 2413 0.113776 CCTACGGGTAGGCCTATGGA 59.886 60.000 17.38 5.05 45.36 3.41
2096 2414 2.667348 CCTACGGGTAGGCCTATGG 58.333 63.158 17.38 10.73 45.36 2.74
2107 2425 2.163815 CTGATAGCGGAATACCTACGGG 59.836 54.545 0.00 0.00 38.88 5.28
2108 2426 2.818432 ACTGATAGCGGAATACCTACGG 59.182 50.000 0.00 0.00 0.00 4.02
2109 2427 4.437121 GCTACTGATAGCGGAATACCTACG 60.437 50.000 0.00 0.00 44.36 3.51
2110 2428 4.984205 GCTACTGATAGCGGAATACCTAC 58.016 47.826 0.00 0.00 44.36 3.18
2122 2440 2.294791 CGAACTCAGGGGCTACTGATAG 59.705 54.545 11.68 5.53 45.67 2.08
2123 2441 2.307768 CGAACTCAGGGGCTACTGATA 58.692 52.381 11.68 0.00 45.67 2.15
2124 2442 1.115467 CGAACTCAGGGGCTACTGAT 58.885 55.000 11.68 0.48 45.67 2.90
2125 2443 0.251653 ACGAACTCAGGGGCTACTGA 60.252 55.000 10.97 10.97 44.74 3.41
2126 2444 0.173708 GACGAACTCAGGGGCTACTG 59.826 60.000 0.00 3.81 39.84 2.74
2127 2445 0.251653 TGACGAACTCAGGGGCTACT 60.252 55.000 0.00 0.00 0.00 2.57
2128 2446 0.606604 TTGACGAACTCAGGGGCTAC 59.393 55.000 0.00 0.00 0.00 3.58
2129 2447 0.895530 CTTGACGAACTCAGGGGCTA 59.104 55.000 0.00 0.00 0.00 3.93
2130 2448 1.674057 CTTGACGAACTCAGGGGCT 59.326 57.895 0.00 0.00 0.00 5.19
2131 2449 1.376037 CCTTGACGAACTCAGGGGC 60.376 63.158 0.00 0.00 41.60 5.80
2134 2452 2.798680 CGATACCTTGACGAACTCAGG 58.201 52.381 0.00 0.00 0.00 3.86
2135 2453 2.186076 GCGATACCTTGACGAACTCAG 58.814 52.381 0.00 0.00 0.00 3.35
2136 2454 1.466866 CGCGATACCTTGACGAACTCA 60.467 52.381 0.00 0.00 0.00 3.41
2137 2455 1.189403 CGCGATACCTTGACGAACTC 58.811 55.000 0.00 0.00 0.00 3.01
2138 2456 0.179145 CCGCGATACCTTGACGAACT 60.179 55.000 8.23 0.00 0.00 3.01
2139 2457 0.457337 ACCGCGATACCTTGACGAAC 60.457 55.000 8.23 0.00 0.00 3.95
2140 2458 1.064505 CTACCGCGATACCTTGACGAA 59.935 52.381 8.23 0.00 0.00 3.85
2141 2459 0.659427 CTACCGCGATACCTTGACGA 59.341 55.000 8.23 0.00 0.00 4.20
2142 2460 0.379669 ACTACCGCGATACCTTGACG 59.620 55.000 8.23 0.00 0.00 4.35
2143 2461 3.065925 AGTTACTACCGCGATACCTTGAC 59.934 47.826 8.23 0.00 0.00 3.18
2144 2462 3.282021 AGTTACTACCGCGATACCTTGA 58.718 45.455 8.23 0.00 0.00 3.02
2145 2463 3.705043 AGTTACTACCGCGATACCTTG 57.295 47.619 8.23 0.00 0.00 3.61
2146 2464 4.884164 AGTTAGTTACTACCGCGATACCTT 59.116 41.667 8.23 0.00 34.56 3.50
2147 2465 4.274459 CAGTTAGTTACTACCGCGATACCT 59.726 45.833 8.23 0.00 34.56 3.08
2148 2466 4.531332 CAGTTAGTTACTACCGCGATACC 58.469 47.826 8.23 0.00 34.56 2.73
2149 2467 4.531332 CCAGTTAGTTACTACCGCGATAC 58.469 47.826 8.23 0.00 34.56 2.24
2150 2468 3.565482 CCCAGTTAGTTACTACCGCGATA 59.435 47.826 8.23 0.00 34.56 2.92
2151 2469 2.360165 CCCAGTTAGTTACTACCGCGAT 59.640 50.000 8.23 0.00 34.56 4.58
2152 2470 1.745087 CCCAGTTAGTTACTACCGCGA 59.255 52.381 8.23 0.00 34.56 5.87
2153 2471 1.800286 GCCCAGTTAGTTACTACCGCG 60.800 57.143 0.00 0.00 34.56 6.46
2154 2472 1.479730 AGCCCAGTTAGTTACTACCGC 59.520 52.381 0.00 0.00 34.56 5.68
2155 2473 3.022406 AGAGCCCAGTTAGTTACTACCG 58.978 50.000 0.00 0.00 34.56 4.02
2156 2474 4.021916 TCAGAGCCCAGTTAGTTACTACC 58.978 47.826 0.00 0.00 34.56 3.18
2157 2475 4.461781 TGTCAGAGCCCAGTTAGTTACTAC 59.538 45.833 0.00 0.00 34.56 2.73
2158 2476 4.669700 TGTCAGAGCCCAGTTAGTTACTA 58.330 43.478 0.00 0.00 34.56 1.82
2159 2477 3.507411 TGTCAGAGCCCAGTTAGTTACT 58.493 45.455 0.00 0.00 37.68 2.24
2160 2478 3.955650 TGTCAGAGCCCAGTTAGTTAC 57.044 47.619 0.00 0.00 0.00 2.50
2161 2479 4.591498 TCTTTGTCAGAGCCCAGTTAGTTA 59.409 41.667 0.00 0.00 0.00 2.24
2162 2480 3.391296 TCTTTGTCAGAGCCCAGTTAGTT 59.609 43.478 0.00 0.00 0.00 2.24
2163 2481 2.972713 TCTTTGTCAGAGCCCAGTTAGT 59.027 45.455 0.00 0.00 0.00 2.24
2164 2482 3.685139 TCTTTGTCAGAGCCCAGTTAG 57.315 47.619 0.00 0.00 0.00 2.34
2165 2483 3.135712 TGTTCTTTGTCAGAGCCCAGTTA 59.864 43.478 0.00 0.00 31.68 2.24
2166 2484 2.092429 TGTTCTTTGTCAGAGCCCAGTT 60.092 45.455 0.00 0.00 31.68 3.16
2167 2485 1.490490 TGTTCTTTGTCAGAGCCCAGT 59.510 47.619 0.00 0.00 31.68 4.00
2168 2486 2.260844 TGTTCTTTGTCAGAGCCCAG 57.739 50.000 0.00 0.00 31.68 4.45
2169 2487 2.957402 ATGTTCTTTGTCAGAGCCCA 57.043 45.000 0.00 0.00 31.68 5.36
2170 2488 3.190118 CAGAATGTTCTTTGTCAGAGCCC 59.810 47.826 0.00 0.00 34.74 5.19
2171 2489 4.067896 TCAGAATGTTCTTTGTCAGAGCC 58.932 43.478 0.00 0.00 34.74 4.70
2172 2490 4.754114 AGTCAGAATGTTCTTTGTCAGAGC 59.246 41.667 0.00 0.00 34.74 4.09
2173 2491 7.151308 ACTAGTCAGAATGTTCTTTGTCAGAG 58.849 38.462 0.00 0.00 34.74 3.35
2174 2492 7.055667 ACTAGTCAGAATGTTCTTTGTCAGA 57.944 36.000 0.00 0.00 34.74 3.27
2175 2493 6.088749 CGACTAGTCAGAATGTTCTTTGTCAG 59.911 42.308 22.37 0.00 34.74 3.51
2176 2494 5.920840 CGACTAGTCAGAATGTTCTTTGTCA 59.079 40.000 22.37 0.00 34.74 3.58
2177 2495 5.164041 GCGACTAGTCAGAATGTTCTTTGTC 60.164 44.000 22.37 0.00 34.74 3.18
2178 2496 4.686554 GCGACTAGTCAGAATGTTCTTTGT 59.313 41.667 22.37 0.00 34.74 2.83
2179 2497 4.092091 GGCGACTAGTCAGAATGTTCTTTG 59.908 45.833 22.37 2.78 34.74 2.77
2180 2498 4.246458 GGCGACTAGTCAGAATGTTCTTT 58.754 43.478 22.37 0.00 34.74 2.52
2181 2499 3.673594 CGGCGACTAGTCAGAATGTTCTT 60.674 47.826 22.37 0.00 34.74 2.52
2182 2500 2.159366 CGGCGACTAGTCAGAATGTTCT 60.159 50.000 22.37 0.00 38.25 3.01
2183 2501 2.186076 CGGCGACTAGTCAGAATGTTC 58.814 52.381 22.37 2.43 37.40 3.18
2184 2502 1.135083 CCGGCGACTAGTCAGAATGTT 60.135 52.381 22.37 0.00 37.40 2.71
2185 2503 0.456221 CCGGCGACTAGTCAGAATGT 59.544 55.000 22.37 0.00 37.40 2.71
2186 2504 0.738975 TCCGGCGACTAGTCAGAATG 59.261 55.000 22.37 6.99 37.54 2.67
2187 2505 1.025812 CTCCGGCGACTAGTCAGAAT 58.974 55.000 22.37 0.00 0.00 2.40
2188 2506 0.322277 ACTCCGGCGACTAGTCAGAA 60.322 55.000 22.37 2.47 0.00 3.02
2189 2507 0.743701 GACTCCGGCGACTAGTCAGA 60.744 60.000 22.37 11.67 39.49 3.27
2190 2508 1.722677 GACTCCGGCGACTAGTCAG 59.277 63.158 22.37 15.32 39.49 3.51
2191 2509 2.104859 CGACTCCGGCGACTAGTCA 61.105 63.158 25.48 1.72 39.60 3.41
2192 2510 2.708255 CGACTCCGGCGACTAGTC 59.292 66.667 20.04 20.04 37.54 2.59
2202 2520 2.432628 GTGGCACTTCCGACTCCG 60.433 66.667 11.13 0.00 37.80 4.63
2203 2521 0.951040 CAAGTGGCACTTCCGACTCC 60.951 60.000 29.07 0.00 36.03 3.85
2204 2522 1.569479 GCAAGTGGCACTTCCGACTC 61.569 60.000 29.07 10.83 43.97 3.36
2205 2523 1.598130 GCAAGTGGCACTTCCGACT 60.598 57.895 29.07 5.60 43.97 4.18
2206 2524 2.946762 GCAAGTGGCACTTCCGAC 59.053 61.111 29.07 15.25 43.97 4.79
2217 2535 1.542915 CTCCCAATCAACCAGCAAGTG 59.457 52.381 0.00 0.00 0.00 3.16
2218 2536 1.425066 TCTCCCAATCAACCAGCAAGT 59.575 47.619 0.00 0.00 0.00 3.16
2219 2537 2.205022 TCTCCCAATCAACCAGCAAG 57.795 50.000 0.00 0.00 0.00 4.01
2220 2538 2.309755 AGATCTCCCAATCAACCAGCAA 59.690 45.455 0.00 0.00 0.00 3.91
2221 2539 1.918262 AGATCTCCCAATCAACCAGCA 59.082 47.619 0.00 0.00 0.00 4.41
2222 2540 2.686915 CAAGATCTCCCAATCAACCAGC 59.313 50.000 0.00 0.00 0.00 4.85
2223 2541 3.285484 CCAAGATCTCCCAATCAACCAG 58.715 50.000 0.00 0.00 0.00 4.00
2224 2542 2.649312 ACCAAGATCTCCCAATCAACCA 59.351 45.455 0.00 0.00 0.00 3.67
2225 2543 3.019564 CACCAAGATCTCCCAATCAACC 58.980 50.000 0.00 0.00 0.00 3.77
2226 2544 3.019564 CCACCAAGATCTCCCAATCAAC 58.980 50.000 0.00 0.00 0.00 3.18
2227 2545 2.918934 TCCACCAAGATCTCCCAATCAA 59.081 45.455 0.00 0.00 0.00 2.57
2228 2546 2.239654 GTCCACCAAGATCTCCCAATCA 59.760 50.000 0.00 0.00 0.00 2.57
2229 2547 2.507471 AGTCCACCAAGATCTCCCAATC 59.493 50.000 0.00 0.00 0.00 2.67
2230 2548 2.507471 GAGTCCACCAAGATCTCCCAAT 59.493 50.000 0.00 0.00 0.00 3.16
2231 2549 1.909302 GAGTCCACCAAGATCTCCCAA 59.091 52.381 0.00 0.00 0.00 4.12
2232 2550 1.203300 TGAGTCCACCAAGATCTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
2233 2551 1.573108 TGAGTCCACCAAGATCTCCC 58.427 55.000 0.00 0.00 0.00 4.30
2234 2552 3.703001 TTTGAGTCCACCAAGATCTCC 57.297 47.619 0.00 0.00 0.00 3.71
2235 2553 4.583871 ACATTTGAGTCCACCAAGATCTC 58.416 43.478 0.00 0.00 0.00 2.75
2236 2554 4.647564 ACATTTGAGTCCACCAAGATCT 57.352 40.909 0.00 0.00 0.00 2.75
2237 2555 4.761739 TGAACATTTGAGTCCACCAAGATC 59.238 41.667 0.00 0.00 0.00 2.75
2238 2556 4.728772 TGAACATTTGAGTCCACCAAGAT 58.271 39.130 0.00 0.00 0.00 2.40
2239 2557 4.163441 TGAACATTTGAGTCCACCAAGA 57.837 40.909 0.00 0.00 0.00 3.02
2240 2558 4.801891 CATGAACATTTGAGTCCACCAAG 58.198 43.478 0.00 0.00 0.00 3.61
2241 2559 3.005684 GCATGAACATTTGAGTCCACCAA 59.994 43.478 0.00 0.00 0.00 3.67
2242 2560 2.557924 GCATGAACATTTGAGTCCACCA 59.442 45.455 0.00 0.00 0.00 4.17
2243 2561 2.094545 GGCATGAACATTTGAGTCCACC 60.095 50.000 0.00 0.00 0.00 4.61
2244 2562 2.821969 AGGCATGAACATTTGAGTCCAC 59.178 45.455 0.00 0.00 0.00 4.02
2245 2563 3.159213 AGGCATGAACATTTGAGTCCA 57.841 42.857 0.00 0.00 0.00 4.02
2246 2564 3.119352 GGAAGGCATGAACATTTGAGTCC 60.119 47.826 0.00 0.00 0.00 3.85
2247 2565 3.507233 TGGAAGGCATGAACATTTGAGTC 59.493 43.478 0.00 0.00 0.00 3.36
2248 2566 3.499338 TGGAAGGCATGAACATTTGAGT 58.501 40.909 0.00 0.00 0.00 3.41
2249 2567 3.760151 TCTGGAAGGCATGAACATTTGAG 59.240 43.478 0.00 0.00 0.00 3.02
2250 2568 3.760151 CTCTGGAAGGCATGAACATTTGA 59.240 43.478 0.00 0.00 0.00 2.69
2251 2569 3.119245 CCTCTGGAAGGCATGAACATTTG 60.119 47.826 0.00 0.00 38.67 2.32
2252 2570 3.094572 CCTCTGGAAGGCATGAACATTT 58.905 45.455 0.00 0.00 38.67 2.32
2253 2571 2.731572 CCTCTGGAAGGCATGAACATT 58.268 47.619 0.00 0.00 38.67 2.71
2254 2572 2.431954 CCTCTGGAAGGCATGAACAT 57.568 50.000 0.00 0.00 38.67 2.71
2255 2573 3.963733 CCTCTGGAAGGCATGAACA 57.036 52.632 0.00 0.00 38.67 3.18
2264 2582 2.124942 GCCCTTCGCCTCTGGAAG 60.125 66.667 0.00 0.00 40.41 3.46
2265 2583 2.469465 CTTGCCCTTCGCCTCTGGAA 62.469 60.000 0.00 0.00 36.24 3.53
2266 2584 2.927856 TTGCCCTTCGCCTCTGGA 60.928 61.111 0.00 0.00 36.24 3.86
2267 2585 2.437359 CTTGCCCTTCGCCTCTGG 60.437 66.667 0.00 0.00 36.24 3.86
2268 2586 3.130160 GCTTGCCCTTCGCCTCTG 61.130 66.667 0.00 0.00 36.24 3.35
2269 2587 2.883267 GATGCTTGCCCTTCGCCTCT 62.883 60.000 0.00 0.00 36.24 3.69
2270 2588 2.439156 ATGCTTGCCCTTCGCCTC 60.439 61.111 0.00 0.00 36.24 4.70
2271 2589 2.439156 GATGCTTGCCCTTCGCCT 60.439 61.111 0.00 0.00 36.24 5.52
2272 2590 2.439156 AGATGCTTGCCCTTCGCC 60.439 61.111 0.00 0.00 36.24 5.54
2273 2591 1.099879 ATCAGATGCTTGCCCTTCGC 61.100 55.000 0.00 0.00 38.31 4.70
2274 2592 1.065102 CAATCAGATGCTTGCCCTTCG 59.935 52.381 0.00 0.00 0.00 3.79
2275 2593 1.407979 CCAATCAGATGCTTGCCCTTC 59.592 52.381 0.00 0.00 0.00 3.46
2276 2594 1.006281 TCCAATCAGATGCTTGCCCTT 59.994 47.619 0.00 0.00 0.00 3.95
2277 2595 0.627451 TCCAATCAGATGCTTGCCCT 59.373 50.000 0.00 0.00 0.00 5.19
2278 2596 1.477553 TTCCAATCAGATGCTTGCCC 58.522 50.000 0.00 0.00 0.00 5.36
2279 2597 3.598019 TTTTCCAATCAGATGCTTGCC 57.402 42.857 0.00 0.00 0.00 4.52
2307 2625 9.482627 CCTGAAGAGATCAAGTTATGTATTACC 57.517 37.037 0.00 0.00 37.67 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.