Multiple sequence alignment - TraesCS3A01G121300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G121300 chr3A 100.000 4194 0 0 1 4194 95476149 95480342 0.000000e+00 7745.0
1 TraesCS3A01G121300 chr3A 75.439 171 29 6 39 196 405975085 405974915 2.090000e-08 71.3
2 TraesCS3A01G121300 chr3D 89.004 4056 219 97 247 4189 81205949 81209890 0.000000e+00 4809.0
3 TraesCS3A01G121300 chr3B 89.057 2970 170 66 1276 4188 126920830 126923701 0.000000e+00 3541.0
4 TraesCS3A01G121300 chr3B 85.248 705 39 15 245 921 126919545 126920212 0.000000e+00 665.0
5 TraesCS3A01G121300 chr3B 97.854 233 2 3 960 1192 126920303 126920532 2.350000e-107 399.0
6 TraesCS3A01G121300 chr7B 88.306 248 18 6 2412 2653 77863580 77863822 1.910000e-73 287.0
7 TraesCS3A01G121300 chr7B 83.448 290 22 9 2025 2288 77863289 77863578 3.240000e-61 246.0
8 TraesCS3A01G121300 chr7B 96.774 31 1 0 166 196 10570126 10570156 8.000000e-03 52.8
9 TraesCS3A01G121300 chrUn 87.903 248 19 6 2412 2653 275342139 275342381 8.880000e-72 281.0
10 TraesCS3A01G121300 chrUn 87.500 248 20 6 2412 2653 275341219 275341461 4.130000e-70 276.0
11 TraesCS3A01G121300 chrUn 89.140 221 17 5 2435 2653 309341312 309341527 6.910000e-68 268.0
12 TraesCS3A01G121300 chrUn 88.235 221 18 7 2435 2653 379041202 379040988 1.500000e-64 257.0
13 TraesCS3A01G121300 chrUn 82.909 275 33 9 2025 2288 275341866 275342137 7.010000e-58 235.0
14 TraesCS3A01G121300 chrUn 82.545 275 34 9 2025 2288 275340946 275341217 3.260000e-56 230.0
15 TraesCS3A01G121300 chrUn 90.385 104 10 0 2025 2128 374008512 374008615 2.030000e-28 137.0
16 TraesCS3A01G121300 chrUn 93.750 80 5 0 2209 2288 379041310 379041231 2.050000e-23 121.0
17 TraesCS3A01G121300 chr2B 88.235 221 18 7 2435 2653 758941082 758940868 1.500000e-64 257.0
18 TraesCS3A01G121300 chr2B 93.750 80 5 0 2209 2288 758941190 758941111 2.050000e-23 121.0
19 TraesCS3A01G121300 chr4A 82.470 251 29 8 2413 2653 607906865 607907110 5.500000e-49 206.0
20 TraesCS3A01G121300 chr4A 86.624 157 11 3 2133 2287 607906713 607906861 9.330000e-37 165.0
21 TraesCS3A01G121300 chr4A 97.143 35 1 0 36 70 619407005 619406971 4.530000e-05 60.2
22 TraesCS3A01G121300 chr1D 87.407 135 17 0 1669 1803 116004720 116004586 5.610000e-34 156.0
23 TraesCS3A01G121300 chr1D 86.747 83 10 1 1436 1518 116004954 116004873 1.610000e-14 91.6
24 TraesCS3A01G121300 chr1A 89.431 123 13 0 1669 1791 127076945 127076823 5.610000e-34 156.0
25 TraesCS3A01G121300 chr1A 86.747 83 10 1 1436 1518 127077178 127077097 1.610000e-14 91.6
26 TraesCS3A01G121300 chr1A 100.000 33 0 0 39 71 91171013 91170981 1.260000e-05 62.1
27 TraesCS3A01G121300 chr1B 86.667 135 18 0 1669 1803 177837673 177837539 2.610000e-32 150.0
28 TraesCS3A01G121300 chr1B 86.747 83 10 1 1436 1518 177837905 177837824 1.610000e-14 91.6
29 TraesCS3A01G121300 chr1B 100.000 34 0 0 38 71 638885923 638885890 3.500000e-06 63.9
30 TraesCS3A01G121300 chr5D 87.736 106 12 1 1685 1789 457777215 457777320 5.690000e-24 122.0
31 TraesCS3A01G121300 chr5D 100.000 33 0 0 39 71 460655992 460655960 1.260000e-05 62.1
32 TraesCS3A01G121300 chr5D 97.222 36 1 0 36 71 548534311 548534276 1.260000e-05 62.1
33 TraesCS3A01G121300 chr5B 87.736 106 12 1 1685 1789 559992268 559992373 5.690000e-24 122.0
34 TraesCS3A01G121300 chr5B 91.429 70 6 0 1723 1792 64265122 64265053 3.450000e-16 97.1
35 TraesCS3A01G121300 chr5A 86.792 106 13 1 1685 1789 575658609 575658714 2.650000e-22 117.0
36 TraesCS3A01G121300 chr4D 74.051 158 39 2 39 194 110237308 110237465 3.500000e-06 63.9
37 TraesCS3A01G121300 chr2D 100.000 33 0 0 39 71 315492768 315492800 1.260000e-05 62.1
38 TraesCS3A01G121300 chr2A 94.737 38 2 0 34 71 570611123 570611160 4.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G121300 chr3A 95476149 95480342 4193 False 7745.0 7745 100.000000 1 4194 1 chr3A.!!$F1 4193
1 TraesCS3A01G121300 chr3D 81205949 81209890 3941 False 4809.0 4809 89.004000 247 4189 1 chr3D.!!$F1 3942
2 TraesCS3A01G121300 chr3B 126919545 126923701 4156 False 1535.0 3541 90.719667 245 4188 3 chr3B.!!$F1 3943
3 TraesCS3A01G121300 chr7B 77863289 77863822 533 False 266.5 287 85.877000 2025 2653 2 chr7B.!!$F2 628
4 TraesCS3A01G121300 chrUn 275340946 275342381 1435 False 255.5 281 85.214250 2025 2653 4 chrUn.!!$F3 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.034863 GGGCTCAAATGTCCGGGTTA 60.035 55.0 0.0 0.00 0.00 2.85 F
1625 1933 0.029834 CATGCTTGCCGGCTTCATAC 59.970 55.0 29.7 11.53 0.00 2.39 F
1631 1939 0.175760 TGCCGGCTTCATACTCTGAC 59.824 55.0 29.7 0.00 32.17 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 1959 0.035534 TGCGCACACCCAATACAGAT 60.036 50.0 5.66 0.0 0.0 2.90 R
2833 4103 0.251916 CCAGACCGCCAAACTATCCA 59.748 55.0 0.00 0.0 0.0 3.41 R
3487 4780 0.388134 GCGCAGAGAACACCGAGTAA 60.388 55.0 0.30 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.394767 TCAATGTAGTTGTATGCAATGATTACT 57.605 29.630 0.00 0.00 38.95 2.24
37 38 8.785329 TGTAGTTGTATGCAATGATTACTTGA 57.215 30.769 0.00 0.00 36.92 3.02
38 39 9.394767 TGTAGTTGTATGCAATGATTACTTGAT 57.605 29.630 0.00 0.00 36.92 2.57
44 45 8.777413 TGTATGCAATGATTACTTGATTAGAGC 58.223 33.333 0.00 0.00 0.00 4.09
45 46 7.812690 ATGCAATGATTACTTGATTAGAGCA 57.187 32.000 0.00 0.00 0.00 4.26
46 47 7.812690 TGCAATGATTACTTGATTAGAGCAT 57.187 32.000 0.00 0.00 0.00 3.79
47 48 7.868775 TGCAATGATTACTTGATTAGAGCATC 58.131 34.615 0.00 0.00 0.00 3.91
58 59 2.280457 GAGCATCTACAGCCGGGC 60.280 66.667 12.11 12.11 0.00 6.13
59 60 4.227134 AGCATCTACAGCCGGGCG 62.227 66.667 14.39 11.21 0.00 6.13
91 92 3.685435 GGTCCGTCCGGTTACTGA 58.315 61.111 0.00 0.00 36.47 3.41
92 93 1.213799 GGTCCGTCCGGTTACTGAC 59.786 63.158 0.00 5.29 34.09 3.51
93 94 1.526575 GGTCCGTCCGGTTACTGACA 61.527 60.000 16.25 0.00 35.88 3.58
94 95 0.529378 GTCCGTCCGGTTACTGACAT 59.471 55.000 11.45 0.00 34.73 3.06
95 96 0.528924 TCCGTCCGGTTACTGACATG 59.471 55.000 0.00 0.00 36.47 3.21
96 97 0.245539 CCGTCCGGTTACTGACATGT 59.754 55.000 0.00 0.00 31.13 3.21
97 98 1.625616 CGTCCGGTTACTGACATGTC 58.374 55.000 19.27 19.27 31.13 3.06
98 99 1.068125 CGTCCGGTTACTGACATGTCA 60.068 52.381 26.33 26.33 38.06 3.58
99 100 2.334838 GTCCGGTTACTGACATGTCAC 58.665 52.381 24.56 14.37 35.46 3.67
100 101 1.964933 TCCGGTTACTGACATGTCACA 59.035 47.619 24.56 12.46 35.46 3.58
101 102 2.365941 TCCGGTTACTGACATGTCACAA 59.634 45.455 24.56 17.42 35.46 3.33
102 103 3.135225 CCGGTTACTGACATGTCACAAA 58.865 45.455 24.56 17.39 35.46 2.83
103 104 3.562141 CCGGTTACTGACATGTCACAAAA 59.438 43.478 24.56 15.03 35.46 2.44
104 105 4.035792 CCGGTTACTGACATGTCACAAAAA 59.964 41.667 24.56 12.72 35.46 1.94
105 106 5.278266 CCGGTTACTGACATGTCACAAAAAT 60.278 40.000 24.56 8.48 35.46 1.82
106 107 5.851177 CGGTTACTGACATGTCACAAAAATC 59.149 40.000 24.56 14.18 35.46 2.17
107 108 6.293407 CGGTTACTGACATGTCACAAAAATCT 60.293 38.462 24.56 2.79 35.46 2.40
108 109 7.095397 CGGTTACTGACATGTCACAAAAATCTA 60.095 37.037 24.56 0.00 35.46 1.98
109 110 8.564574 GGTTACTGACATGTCACAAAAATCTAA 58.435 33.333 24.56 7.24 35.46 2.10
110 111 9.382244 GTTACTGACATGTCACAAAAATCTAAC 57.618 33.333 24.56 13.83 35.46 2.34
111 112 6.970484 ACTGACATGTCACAAAAATCTAACC 58.030 36.000 24.56 0.00 35.46 2.85
112 113 6.016276 ACTGACATGTCACAAAAATCTAACCC 60.016 38.462 24.56 0.00 35.46 4.11
113 114 5.830457 TGACATGTCACAAAAATCTAACCCA 59.170 36.000 24.56 0.00 34.14 4.51
114 115 6.016360 TGACATGTCACAAAAATCTAACCCAG 60.016 38.462 24.56 0.00 34.14 4.45
115 116 6.068010 ACATGTCACAAAAATCTAACCCAGA 58.932 36.000 0.00 0.00 37.79 3.86
116 117 6.016276 ACATGTCACAAAAATCTAACCCAGAC 60.016 38.462 0.00 0.00 35.62 3.51
117 118 5.441500 TGTCACAAAAATCTAACCCAGACA 58.558 37.500 0.00 0.00 35.62 3.41
118 119 5.530915 TGTCACAAAAATCTAACCCAGACAG 59.469 40.000 0.00 0.00 35.62 3.51
119 120 5.048713 GTCACAAAAATCTAACCCAGACAGG 60.049 44.000 0.00 0.00 35.62 4.00
120 121 4.827284 CACAAAAATCTAACCCAGACAGGT 59.173 41.667 0.00 0.00 44.00 4.00
121 122 4.827284 ACAAAAATCTAACCCAGACAGGTG 59.173 41.667 0.00 0.00 40.05 4.00
122 123 4.724279 AAAATCTAACCCAGACAGGTGT 57.276 40.909 0.00 0.00 40.05 4.16
123 124 3.983044 AATCTAACCCAGACAGGTGTC 57.017 47.619 1.60 1.60 40.05 3.67
132 133 2.914379 GACAGGTGTCTCAAACGGG 58.086 57.895 2.72 0.00 41.65 5.28
133 134 0.602905 GACAGGTGTCTCAAACGGGG 60.603 60.000 2.72 0.00 41.65 5.73
134 135 1.966451 CAGGTGTCTCAAACGGGGC 60.966 63.158 0.00 0.00 0.00 5.80
135 136 2.147387 AGGTGTCTCAAACGGGGCT 61.147 57.895 0.00 0.00 0.00 5.19
136 137 1.671379 GGTGTCTCAAACGGGGCTC 60.671 63.158 0.00 0.00 0.00 4.70
137 138 1.070786 GTGTCTCAAACGGGGCTCA 59.929 57.895 0.00 0.00 0.00 4.26
138 139 0.534203 GTGTCTCAAACGGGGCTCAA 60.534 55.000 0.00 0.00 0.00 3.02
139 140 0.181587 TGTCTCAAACGGGGCTCAAA 59.818 50.000 0.00 0.00 0.00 2.69
140 141 1.202879 TGTCTCAAACGGGGCTCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
141 142 1.200020 GTCTCAAACGGGGCTCAAATG 59.800 52.381 0.00 0.00 0.00 2.32
142 143 1.202879 TCTCAAACGGGGCTCAAATGT 60.203 47.619 0.00 0.00 0.00 2.71
143 144 1.200020 CTCAAACGGGGCTCAAATGTC 59.800 52.381 0.00 0.00 0.00 3.06
144 145 0.243636 CAAACGGGGCTCAAATGTCC 59.756 55.000 0.00 0.00 0.00 4.02
145 146 1.241315 AAACGGGGCTCAAATGTCCG 61.241 55.000 0.00 0.00 45.42 4.79
146 147 2.824041 CGGGGCTCAAATGTCCGG 60.824 66.667 0.00 0.00 37.35 5.14
147 148 2.440247 GGGGCTCAAATGTCCGGG 60.440 66.667 0.00 0.00 0.00 5.73
148 149 2.355115 GGGCTCAAATGTCCGGGT 59.645 61.111 0.00 0.00 0.00 5.28
149 150 1.304134 GGGCTCAAATGTCCGGGTT 60.304 57.895 0.00 0.00 0.00 4.11
150 151 0.034863 GGGCTCAAATGTCCGGGTTA 60.035 55.000 0.00 0.00 0.00 2.85
151 152 1.614850 GGGCTCAAATGTCCGGGTTAA 60.615 52.381 0.00 0.00 0.00 2.01
152 153 2.375146 GGCTCAAATGTCCGGGTTAAT 58.625 47.619 0.00 0.00 0.00 1.40
153 154 2.357952 GGCTCAAATGTCCGGGTTAATC 59.642 50.000 0.00 0.00 0.00 1.75
154 155 2.031683 GCTCAAATGTCCGGGTTAATCG 59.968 50.000 0.00 0.00 0.00 3.34
155 156 3.527533 CTCAAATGTCCGGGTTAATCGA 58.472 45.455 0.00 0.00 0.00 3.59
156 157 3.264104 TCAAATGTCCGGGTTAATCGAC 58.736 45.455 0.00 0.00 0.00 4.20
157 158 3.004171 CAAATGTCCGGGTTAATCGACA 58.996 45.455 0.00 0.00 0.00 4.35
158 159 2.304751 ATGTCCGGGTTAATCGACAC 57.695 50.000 0.00 0.00 0.00 3.67
159 160 0.247185 TGTCCGGGTTAATCGACACC 59.753 55.000 0.00 0.00 0.00 4.16
163 164 3.774616 GGGTTAATCGACACCCCTC 57.225 57.895 15.69 0.00 46.50 4.30
164 165 0.179092 GGGTTAATCGACACCCCTCG 60.179 60.000 15.69 0.00 46.50 4.63
165 166 0.533951 GGTTAATCGACACCCCTCGT 59.466 55.000 0.00 0.00 35.10 4.18
166 167 1.750778 GGTTAATCGACACCCCTCGTA 59.249 52.381 0.00 0.00 35.10 3.43
167 168 2.480244 GGTTAATCGACACCCCTCGTAC 60.480 54.545 0.00 0.00 35.10 3.67
168 169 1.392589 TAATCGACACCCCTCGTACC 58.607 55.000 0.00 0.00 35.10 3.34
169 170 1.325476 AATCGACACCCCTCGTACCC 61.325 60.000 0.00 0.00 35.10 3.69
170 171 2.503846 ATCGACACCCCTCGTACCCA 62.504 60.000 0.00 0.00 35.10 4.51
171 172 2.707849 CGACACCCCTCGTACCCAG 61.708 68.421 0.00 0.00 0.00 4.45
172 173 3.001406 ACACCCCTCGTACCCAGC 61.001 66.667 0.00 0.00 0.00 4.85
173 174 3.782443 CACCCCTCGTACCCAGCC 61.782 72.222 0.00 0.00 0.00 4.85
176 177 3.006728 CCCTCGTACCCAGCCCAA 61.007 66.667 0.00 0.00 0.00 4.12
177 178 2.598787 CCCTCGTACCCAGCCCAAA 61.599 63.158 0.00 0.00 0.00 3.28
178 179 1.607612 CCTCGTACCCAGCCCAAAT 59.392 57.895 0.00 0.00 0.00 2.32
179 180 0.834612 CCTCGTACCCAGCCCAAATA 59.165 55.000 0.00 0.00 0.00 1.40
180 181 1.420138 CCTCGTACCCAGCCCAAATAT 59.580 52.381 0.00 0.00 0.00 1.28
181 182 2.494059 CTCGTACCCAGCCCAAATATG 58.506 52.381 0.00 0.00 0.00 1.78
182 183 2.104111 CTCGTACCCAGCCCAAATATGA 59.896 50.000 0.00 0.00 0.00 2.15
183 184 2.104111 TCGTACCCAGCCCAAATATGAG 59.896 50.000 0.00 0.00 0.00 2.90
184 185 2.810400 CGTACCCAGCCCAAATATGAGG 60.810 54.545 0.00 0.00 0.00 3.86
185 186 1.308877 ACCCAGCCCAAATATGAGGT 58.691 50.000 0.00 0.00 0.00 3.85
186 187 1.063717 ACCCAGCCCAAATATGAGGTG 60.064 52.381 0.00 0.00 0.00 4.00
187 188 1.215173 CCCAGCCCAAATATGAGGTGA 59.785 52.381 0.00 0.00 0.00 4.02
188 189 2.358090 CCCAGCCCAAATATGAGGTGAA 60.358 50.000 0.00 0.00 0.00 3.18
189 190 3.569491 CCAGCCCAAATATGAGGTGAAT 58.431 45.455 0.00 0.00 0.00 2.57
190 191 4.447616 CCCAGCCCAAATATGAGGTGAATA 60.448 45.833 0.00 0.00 0.00 1.75
191 192 5.327732 CCAGCCCAAATATGAGGTGAATAT 58.672 41.667 0.00 0.00 0.00 1.28
192 193 5.184479 CCAGCCCAAATATGAGGTGAATATG 59.816 44.000 0.00 0.00 0.00 1.78
193 194 5.184479 CAGCCCAAATATGAGGTGAATATGG 59.816 44.000 0.00 0.00 0.00 2.74
194 195 4.463891 GCCCAAATATGAGGTGAATATGGG 59.536 45.833 0.00 0.00 31.07 4.00
195 196 5.018809 CCCAAATATGAGGTGAATATGGGG 58.981 45.833 0.00 0.00 32.97 4.96
196 197 4.463891 CCAAATATGAGGTGAATATGGGGC 59.536 45.833 0.00 0.00 0.00 5.80
197 198 3.634397 ATATGAGGTGAATATGGGGCG 57.366 47.619 0.00 0.00 0.00 6.13
198 199 1.434188 ATGAGGTGAATATGGGGCGA 58.566 50.000 0.00 0.00 0.00 5.54
199 200 1.434188 TGAGGTGAATATGGGGCGAT 58.566 50.000 0.00 0.00 0.00 4.58
200 201 1.072173 TGAGGTGAATATGGGGCGATG 59.928 52.381 0.00 0.00 0.00 3.84
201 202 0.401738 AGGTGAATATGGGGCGATGG 59.598 55.000 0.00 0.00 0.00 3.51
202 203 1.244019 GGTGAATATGGGGCGATGGC 61.244 60.000 0.00 0.00 38.90 4.40
215 216 3.943479 GATGGCCGTGCACACCGTA 62.943 63.158 18.64 3.04 0.00 4.02
216 217 3.950794 ATGGCCGTGCACACCGTAG 62.951 63.158 18.64 0.00 0.00 3.51
217 218 4.367023 GGCCGTGCACACCGTAGA 62.367 66.667 18.64 0.00 0.00 2.59
218 219 2.809601 GCCGTGCACACCGTAGAG 60.810 66.667 18.64 0.00 0.00 2.43
219 220 2.809601 CCGTGCACACCGTAGAGC 60.810 66.667 18.64 0.00 0.00 4.09
220 221 3.172575 CGTGCACACCGTAGAGCG 61.173 66.667 18.64 0.00 40.95 5.03
221 222 2.049433 GTGCACACCGTAGAGCGT 60.049 61.111 13.17 0.00 39.32 5.07
222 223 1.210931 GTGCACACCGTAGAGCGTA 59.789 57.895 13.17 0.00 39.32 4.42
223 224 0.797249 GTGCACACCGTAGAGCGTAG 60.797 60.000 13.17 0.00 39.32 3.51
224 225 0.956902 TGCACACCGTAGAGCGTAGA 60.957 55.000 0.00 0.00 39.32 2.59
225 226 0.248134 GCACACCGTAGAGCGTAGAG 60.248 60.000 0.00 0.00 39.32 2.43
226 227 0.377554 CACACCGTAGAGCGTAGAGG 59.622 60.000 0.00 0.00 39.32 3.69
227 228 0.035630 ACACCGTAGAGCGTAGAGGT 60.036 55.000 0.00 0.00 39.32 3.85
233 234 4.253257 GAGCGTAGAGGTCGGGCG 62.253 72.222 0.00 0.00 37.64 6.13
235 236 4.849329 GCGTAGAGGTCGGGCGTG 62.849 72.222 0.00 0.00 0.00 5.34
236 237 4.849329 CGTAGAGGTCGGGCGTGC 62.849 72.222 0.00 0.00 0.00 5.34
237 238 4.849329 GTAGAGGTCGGGCGTGCG 62.849 72.222 0.00 0.00 0.00 5.34
254 255 1.604278 TGCGTGGATCTGATCGTCTAG 59.396 52.381 11.28 2.98 0.00 2.43
280 281 7.377766 ACGCATGTTGTGTTTCTAGAAATAT 57.622 32.000 20.41 0.50 37.97 1.28
307 308 3.054728 TCGGAACCATGTATCACCATTGT 60.055 43.478 0.00 0.00 0.00 2.71
309 310 4.269183 GGAACCATGTATCACCATTGTCA 58.731 43.478 0.00 0.00 0.00 3.58
311 312 5.360714 GGAACCATGTATCACCATTGTCAAT 59.639 40.000 0.00 0.00 0.00 2.57
312 313 6.127366 GGAACCATGTATCACCATTGTCAATT 60.127 38.462 0.00 0.00 0.00 2.32
313 314 6.211587 ACCATGTATCACCATTGTCAATTG 57.788 37.500 0.00 0.00 0.00 2.32
380 381 1.648467 AAAGCTCCCGCGCAAGATTC 61.648 55.000 8.75 0.00 42.32 2.52
387 393 2.399611 GCGCAAGATTCGGTTCCG 59.600 61.111 0.30 4.74 43.02 4.30
389 395 1.908066 GCGCAAGATTCGGTTCCGTT 61.908 55.000 0.30 0.55 43.02 4.44
390 396 0.094730 CGCAAGATTCGGTTCCGTTC 59.905 55.000 11.04 9.36 43.02 3.95
391 397 0.446616 GCAAGATTCGGTTCCGTTCC 59.553 55.000 11.04 2.07 0.00 3.62
392 398 1.803334 CAAGATTCGGTTCCGTTCCA 58.197 50.000 11.04 0.00 0.00 3.53
393 399 2.356135 CAAGATTCGGTTCCGTTCCAT 58.644 47.619 11.04 0.37 0.00 3.41
394 400 2.311124 AGATTCGGTTCCGTTCCATC 57.689 50.000 11.04 8.62 0.00 3.51
395 401 0.928229 GATTCGGTTCCGTTCCATCG 59.072 55.000 11.04 0.00 0.00 3.84
499 505 4.555709 ACGCGCCCAACAGTTCCA 62.556 61.111 5.73 0.00 0.00 3.53
507 513 1.676014 CCCAACAGTTCCATCCTCGAC 60.676 57.143 0.00 0.00 0.00 4.20
508 514 1.350193 CAACAGTTCCATCCTCGACG 58.650 55.000 0.00 0.00 0.00 5.12
509 515 0.389948 AACAGTTCCATCCTCGACGC 60.390 55.000 0.00 0.00 0.00 5.19
510 516 1.519455 CAGTTCCATCCTCGACGCC 60.519 63.158 0.00 0.00 0.00 5.68
511 517 1.682684 AGTTCCATCCTCGACGCCT 60.683 57.895 0.00 0.00 0.00 5.52
724 762 1.337823 ACCTCGTGCTTCTGCGTTATT 60.338 47.619 0.00 0.00 43.34 1.40
730 768 1.804151 TGCTTCTGCGTTATTGTGGAC 59.196 47.619 0.00 0.00 43.34 4.02
928 970 2.268280 CTGGACCAGAGGCAGCAG 59.732 66.667 17.22 0.00 32.44 4.24
929 971 3.972971 CTGGACCAGAGGCAGCAGC 62.973 68.421 17.22 0.00 34.91 5.25
947 1010 3.046087 AGAAGACGACGACGCCGA 61.046 61.111 11.37 0.00 43.96 5.54
1136 1230 2.837291 CGCCTCCTCCTCCTCCTG 60.837 72.222 0.00 0.00 0.00 3.86
1204 1298 4.388499 CCAAGTACGCGCCACCCT 62.388 66.667 5.73 0.00 0.00 4.34
1205 1299 2.813908 CAAGTACGCGCCACCCTC 60.814 66.667 5.73 0.00 0.00 4.30
1206 1300 4.078516 AAGTACGCGCCACCCTCC 62.079 66.667 5.73 0.00 0.00 4.30
1215 1309 4.825679 CCACCCTCCCTCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1224 1318 4.179599 CTCCCTCCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1231 1325 4.787280 CCTCCCCCTCCGCTGTCT 62.787 72.222 0.00 0.00 0.00 3.41
1232 1326 3.151022 CTCCCCCTCCGCTGTCTC 61.151 72.222 0.00 0.00 0.00 3.36
1268 1362 0.453449 GCTTTCTTTCTTGCGGCGAG 60.453 55.000 12.98 11.13 0.00 5.03
1499 1807 0.617820 AGGTGAACCTGCGGGACTAT 60.618 55.000 21.41 0.46 46.55 2.12
1572 1880 1.986413 ACCATCAGTGAGTCCCTGC 59.014 57.895 0.00 0.00 0.00 4.85
1573 1881 1.222936 CCATCAGTGAGTCCCTGCC 59.777 63.158 0.00 0.00 0.00 4.85
1576 1884 0.252421 ATCAGTGAGTCCCTGCCTCA 60.252 55.000 0.00 0.00 36.63 3.86
1578 1886 0.617413 CAGTGAGTCCCTGCCTCAAT 59.383 55.000 0.00 0.00 40.44 2.57
1579 1887 0.908198 AGTGAGTCCCTGCCTCAATC 59.092 55.000 0.00 0.00 40.44 2.67
1580 1888 0.460987 GTGAGTCCCTGCCTCAATCG 60.461 60.000 0.00 0.00 40.44 3.34
1581 1889 0.614697 TGAGTCCCTGCCTCAATCGA 60.615 55.000 0.00 0.00 36.07 3.59
1624 1932 0.107263 TCATGCTTGCCGGCTTCATA 60.107 50.000 29.70 10.73 0.00 2.15
1625 1933 0.029834 CATGCTTGCCGGCTTCATAC 59.970 55.000 29.70 11.53 0.00 2.39
1629 1937 1.293924 CTTGCCGGCTTCATACTCTG 58.706 55.000 29.70 1.42 0.00 3.35
1631 1939 0.175760 TGCCGGCTTCATACTCTGAC 59.824 55.000 29.70 0.00 32.17 3.51
1632 1940 0.461961 GCCGGCTTCATACTCTGACT 59.538 55.000 22.15 0.00 32.17 3.41
1633 1941 1.134670 GCCGGCTTCATACTCTGACTT 60.135 52.381 22.15 0.00 32.17 3.01
1638 1946 4.681744 GGCTTCATACTCTGACTTCTGAG 58.318 47.826 10.65 10.65 44.40 3.35
1646 1954 1.809547 TCTGACTTCTGAGCTGACGAG 59.190 52.381 0.00 0.00 0.00 4.18
1647 1955 1.809547 CTGACTTCTGAGCTGACGAGA 59.190 52.381 0.00 0.00 0.00 4.04
1648 1956 2.227626 CTGACTTCTGAGCTGACGAGAA 59.772 50.000 0.00 0.00 0.00 2.87
1651 1959 0.961753 TTCTGAGCTGACGAGAAGCA 59.038 50.000 0.00 0.00 43.37 3.91
1652 1960 1.180907 TCTGAGCTGACGAGAAGCAT 58.819 50.000 0.00 0.00 43.37 3.79
1653 1961 1.133982 TCTGAGCTGACGAGAAGCATC 59.866 52.381 0.00 6.46 43.37 3.91
1654 1962 1.134753 CTGAGCTGACGAGAAGCATCT 59.865 52.381 0.00 0.00 43.37 2.90
1655 1963 1.135170 TGAGCTGACGAGAAGCATCTG 60.135 52.381 0.00 0.00 43.37 2.90
1656 1964 0.894141 AGCTGACGAGAAGCATCTGT 59.106 50.000 0.00 0.00 43.37 3.41
1657 1965 2.095461 AGCTGACGAGAAGCATCTGTA 58.905 47.619 0.00 0.00 43.37 2.74
1658 1966 2.692557 AGCTGACGAGAAGCATCTGTAT 59.307 45.455 0.00 0.00 43.37 2.29
1685 1993 3.890674 GCAGGGAAGTTCGCGAAT 58.109 55.556 26.23 10.17 34.19 3.34
1815 2123 3.157252 GCGCCATCCTCCTCTCCA 61.157 66.667 0.00 0.00 0.00 3.86
1865 2187 2.539476 CAAAGTTTGTGTCCTGTTGCC 58.461 47.619 7.48 0.00 0.00 4.52
1906 2228 3.193479 GGATGATTGTTTGGACTGGGTTC 59.807 47.826 0.00 0.00 0.00 3.62
1977 2299 4.111255 TCTGGGTGAATTGACCAAATCA 57.889 40.909 16.35 3.68 37.80 2.57
2021 2344 9.357652 TGATTTTGTTAAGATTAGATTGCTTGC 57.642 29.630 0.00 0.00 0.00 4.01
2022 2345 9.578439 GATTTTGTTAAGATTAGATTGCTTGCT 57.422 29.630 0.00 0.00 0.00 3.91
2023 2346 9.933723 ATTTTGTTAAGATTAGATTGCTTGCTT 57.066 25.926 0.00 0.00 0.00 3.91
2029 2352 7.400599 AAGATTAGATTGCTTGCTTGATTGA 57.599 32.000 0.00 0.00 0.00 2.57
2033 2356 4.755411 AGATTGCTTGCTTGATTGATTGG 58.245 39.130 0.00 0.00 0.00 3.16
2247 3505 8.358582 AGATTTGAACAGATTAATTGCTTCCT 57.641 30.769 0.00 0.00 0.00 3.36
2273 3531 8.275015 TGATTCCGTCTGCATTTATCTAAAAA 57.725 30.769 0.00 0.00 0.00 1.94
2320 3580 0.536006 GGCAGACCTGAGCAAAGTGT 60.536 55.000 0.47 0.00 0.00 3.55
2430 3691 3.188048 GGAGCATGGATAATCGAAGCAAG 59.812 47.826 0.00 0.00 0.00 4.01
2456 3721 7.359598 GCGAATATACTCTGCCTGATTTACTTG 60.360 40.741 0.00 0.00 0.00 3.16
2464 3729 5.129320 TCTGCCTGATTTACTTGCATCTCTA 59.871 40.000 0.00 0.00 0.00 2.43
2497 3762 3.354948 TGTCACATCCAGAGGAATTGG 57.645 47.619 0.00 0.00 34.34 3.16
2528 3795 7.012421 GTGGGTCAGTTATAAGAATTGGATGTC 59.988 40.741 0.00 0.00 0.00 3.06
2625 3894 1.615392 AGCAAACTTTGATGTCCAGCC 59.385 47.619 5.65 0.00 0.00 4.85
2645 3914 2.224769 CCTCTTTCCAGTAACAGGGCAA 60.225 50.000 0.00 0.00 0.00 4.52
2648 3917 2.738587 TTCCAGTAACAGGGCAAACA 57.261 45.000 0.00 0.00 0.00 2.83
2668 3937 3.921257 TGATGCCTATCCATCAGCG 57.079 52.632 1.03 0.00 44.79 5.18
2677 3946 4.439426 GCCTATCCATCAGCGTATGTCTAG 60.439 50.000 1.44 0.00 0.00 2.43
2762 4031 7.171678 CCTTTCTAGTTTTGTTCTCCACTAGTG 59.828 40.741 16.34 16.34 39.77 2.74
2821 4091 2.841442 AGGAAGTGTGGTTACTGCTC 57.159 50.000 0.00 0.00 0.00 4.26
2832 4102 1.873591 GTTACTGCTCTGTGTGGGTTG 59.126 52.381 0.00 0.00 0.00 3.77
2833 4103 1.128200 TACTGCTCTGTGTGGGTTGT 58.872 50.000 0.00 0.00 0.00 3.32
2834 4104 0.464373 ACTGCTCTGTGTGGGTTGTG 60.464 55.000 0.00 0.00 0.00 3.33
2863 4133 2.747686 GGTCTGGCCCTTGTCGAA 59.252 61.111 0.00 0.00 0.00 3.71
2864 4134 1.671379 GGTCTGGCCCTTGTCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
2867 4137 1.376037 CTGGCCCTTGTCGAACTCC 60.376 63.158 0.00 0.00 0.00 3.85
2869 4139 1.375326 GGCCCTTGTCGAACTCCTT 59.625 57.895 0.00 0.00 0.00 3.36
2935 4205 3.366476 CGAGGATGACGAGAAGTGTTCTT 60.366 47.826 0.00 0.00 40.87 2.52
2943 4213 0.759346 AGAAGTGTTCTTGCCGGACT 59.241 50.000 5.05 0.00 36.36 3.85
2944 4214 1.141053 AGAAGTGTTCTTGCCGGACTT 59.859 47.619 5.05 3.35 36.36 3.01
2992 4262 4.880164 TCCTAACCTCTGGTATGCTTACT 58.120 43.478 9.39 0.00 33.12 2.24
3063 4333 1.202651 AGGCCGTGAACATAGGTATGC 60.203 52.381 0.00 0.00 37.19 3.14
3280 4570 5.970023 GTGTACAGCTATCGGTTACTTACTG 59.030 44.000 0.00 0.00 34.20 2.74
3370 4663 6.650390 GCACCACTATAGTCTCTACTACTACC 59.350 46.154 1.26 0.00 40.98 3.18
3398 4691 4.916041 AGAAGATGGTGATGGTGAAAGA 57.084 40.909 0.00 0.00 0.00 2.52
3399 4692 5.246981 AGAAGATGGTGATGGTGAAAGAA 57.753 39.130 0.00 0.00 0.00 2.52
3400 4693 5.634118 AGAAGATGGTGATGGTGAAAGAAA 58.366 37.500 0.00 0.00 0.00 2.52
3401 4694 5.709164 AGAAGATGGTGATGGTGAAAGAAAG 59.291 40.000 0.00 0.00 0.00 2.62
3429 4722 6.252995 TGGGAGCTTGAAATATACACCTTTT 58.747 36.000 0.00 0.00 0.00 2.27
3430 4723 6.723977 TGGGAGCTTGAAATATACACCTTTTT 59.276 34.615 0.00 0.00 0.00 1.94
3431 4724 7.891183 TGGGAGCTTGAAATATACACCTTTTTA 59.109 33.333 0.00 0.00 0.00 1.52
3432 4725 8.188799 GGGAGCTTGAAATATACACCTTTTTAC 58.811 37.037 0.00 0.00 0.00 2.01
3433 4726 8.736244 GGAGCTTGAAATATACACCTTTTTACA 58.264 33.333 0.00 0.00 0.00 2.41
3480 4773 8.567948 GTTTGTCTCTTGATGAATAAGACCAAA 58.432 33.333 5.53 0.00 36.39 3.28
3487 4780 6.839124 TGATGAATAAGACCAAACTTGCAT 57.161 33.333 0.00 0.00 0.00 3.96
3488 4781 7.230849 TGATGAATAAGACCAAACTTGCATT 57.769 32.000 0.00 0.00 0.00 3.56
3495 4789 2.812011 GACCAAACTTGCATTACTCGGT 59.188 45.455 0.00 0.00 0.00 4.69
3510 4816 3.414700 GGTGTTCTCTGCGCACCG 61.415 66.667 5.66 0.00 42.43 4.94
3511 4817 2.661866 GTGTTCTCTGCGCACCGT 60.662 61.111 5.66 0.00 0.00 4.83
3512 4818 2.355837 TGTTCTCTGCGCACCGTC 60.356 61.111 5.66 0.00 0.00 4.79
3513 4819 3.470567 GTTCTCTGCGCACCGTCG 61.471 66.667 5.66 0.00 0.00 5.12
3533 4839 0.456312 CGAGCGAGGTTACCTGTGAC 60.456 60.000 9.39 0.00 31.76 3.67
3534 4840 0.601558 GAGCGAGGTTACCTGTGACA 59.398 55.000 9.39 0.00 31.76 3.58
3537 4843 0.677288 CGAGGTTACCTGTGACACCA 59.323 55.000 9.39 0.00 31.76 4.17
3572 4878 3.236632 GGCTTTGCCTTGGTAAATCTG 57.763 47.619 3.54 0.00 46.69 2.90
3574 4880 3.119352 GGCTTTGCCTTGGTAAATCTGAG 60.119 47.826 3.54 0.00 46.69 3.35
3578 4884 6.478512 TTTGCCTTGGTAAATCTGAGTTTT 57.521 33.333 0.00 0.00 0.00 2.43
3579 4885 6.478512 TTGCCTTGGTAAATCTGAGTTTTT 57.521 33.333 0.00 0.00 0.00 1.94
3626 4932 9.220635 GGTTTTTGTTTGAAGTTCATTTTATGC 57.779 29.630 6.36 0.00 0.00 3.14
3650 4961 4.307432 AGACTGTAAGAAATGTGTCCACG 58.693 43.478 0.00 0.00 37.43 4.94
3661 4972 6.876789 AGAAATGTGTCCACGTTGTTCATATA 59.123 34.615 5.69 0.00 40.17 0.86
3662 4973 7.552687 AGAAATGTGTCCACGTTGTTCATATAT 59.447 33.333 5.69 0.00 40.17 0.86
3664 4975 6.415798 TGTGTCCACGTTGTTCATATATTG 57.584 37.500 0.00 0.00 0.00 1.90
3665 4976 5.163804 TGTGTCCACGTTGTTCATATATTGC 60.164 40.000 0.00 0.00 0.00 3.56
3705 5016 5.178996 GTGCATATCTGAGCTTTATCAGTGG 59.821 44.000 0.00 0.00 45.70 4.00
3749 5061 0.675083 CACTGTGCTGCCAAATGGAA 59.325 50.000 2.98 0.00 37.39 3.53
3750 5062 1.068895 CACTGTGCTGCCAAATGGAAA 59.931 47.619 2.98 0.00 37.39 3.13
3755 5067 2.093341 GTGCTGCCAAATGGAAATGGAT 60.093 45.455 2.98 0.00 39.12 3.41
3756 5068 2.168936 TGCTGCCAAATGGAAATGGATC 59.831 45.455 2.98 0.00 39.12 3.36
3784 5096 2.810488 AAAATGGGGCCAGAGCAGGG 62.810 60.000 4.39 0.00 42.56 4.45
3853 5166 2.953821 GTGTTGCGACCATGGTGG 59.046 61.111 25.52 23.35 45.02 4.61
3951 5275 0.110056 GATGCTGCTGTTGTTCCACG 60.110 55.000 0.00 0.00 0.00 4.94
3957 5281 1.305930 GCTGTTGTTCCACGATCCCC 61.306 60.000 0.00 0.00 0.00 4.81
3965 5289 0.909623 TCCACGATCCCCTTTCCTTC 59.090 55.000 0.00 0.00 0.00 3.46
4003 5327 1.364171 CTGATAAGCTCGGACGGGG 59.636 63.158 0.00 0.00 31.20 5.73
4140 5464 2.881352 CTTTCGCTCGCCGGAGAC 60.881 66.667 5.05 1.17 43.27 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.394767 AGTAATCATTGCATACAACTACATTGA 57.605 29.630 0.00 0.00 41.23 2.57
11 12 9.394767 TCAAGTAATCATTGCATACAACTACAT 57.605 29.630 0.00 0.00 38.99 2.29
12 13 8.785329 TCAAGTAATCATTGCATACAACTACA 57.215 30.769 0.00 0.00 38.99 2.74
18 19 8.777413 GCTCTAATCAAGTAATCATTGCATACA 58.223 33.333 0.00 0.00 0.00 2.29
19 20 8.777413 TGCTCTAATCAAGTAATCATTGCATAC 58.223 33.333 0.00 0.00 0.00 2.39
20 21 8.907222 TGCTCTAATCAAGTAATCATTGCATA 57.093 30.769 0.00 0.00 0.00 3.14
21 22 7.812690 TGCTCTAATCAAGTAATCATTGCAT 57.187 32.000 0.00 0.00 0.00 3.96
22 23 7.718314 AGATGCTCTAATCAAGTAATCATTGCA 59.282 33.333 0.00 0.00 0.00 4.08
23 24 8.097078 AGATGCTCTAATCAAGTAATCATTGC 57.903 34.615 0.00 0.00 0.00 3.56
26 27 9.926158 CTGTAGATGCTCTAATCAAGTAATCAT 57.074 33.333 0.00 0.00 29.58 2.45
27 28 7.869937 GCTGTAGATGCTCTAATCAAGTAATCA 59.130 37.037 0.00 0.00 29.58 2.57
28 29 7.330700 GGCTGTAGATGCTCTAATCAAGTAATC 59.669 40.741 0.00 0.00 29.58 1.75
29 30 7.158021 GGCTGTAGATGCTCTAATCAAGTAAT 58.842 38.462 0.00 0.00 29.58 1.89
30 31 6.516718 GGCTGTAGATGCTCTAATCAAGTAA 58.483 40.000 0.00 0.00 29.58 2.24
31 32 5.278512 CGGCTGTAGATGCTCTAATCAAGTA 60.279 44.000 0.00 0.00 29.58 2.24
32 33 4.500545 CGGCTGTAGATGCTCTAATCAAGT 60.501 45.833 0.00 0.00 29.58 3.16
33 34 3.986572 CGGCTGTAGATGCTCTAATCAAG 59.013 47.826 0.00 0.00 29.58 3.02
34 35 3.243873 CCGGCTGTAGATGCTCTAATCAA 60.244 47.826 0.00 0.00 29.58 2.57
35 36 2.297315 CCGGCTGTAGATGCTCTAATCA 59.703 50.000 0.00 0.00 29.58 2.57
36 37 2.353208 CCCGGCTGTAGATGCTCTAATC 60.353 54.545 0.00 0.00 29.58 1.75
37 38 1.620819 CCCGGCTGTAGATGCTCTAAT 59.379 52.381 0.00 0.00 29.58 1.73
38 39 1.040646 CCCGGCTGTAGATGCTCTAA 58.959 55.000 0.00 0.00 29.58 2.10
39 40 1.464376 GCCCGGCTGTAGATGCTCTA 61.464 60.000 0.71 0.00 0.00 2.43
40 41 2.801631 GCCCGGCTGTAGATGCTCT 61.802 63.158 0.71 0.00 0.00 4.09
41 42 2.280457 GCCCGGCTGTAGATGCTC 60.280 66.667 0.71 0.00 0.00 4.26
42 43 4.227134 CGCCCGGCTGTAGATGCT 62.227 66.667 8.05 0.00 0.00 3.79
74 75 1.213799 GTCAGTAACCGGACGGACC 59.786 63.158 18.80 4.48 38.24 4.46
75 76 0.529378 ATGTCAGTAACCGGACGGAC 59.471 55.000 18.80 14.11 42.67 4.79
76 77 0.528924 CATGTCAGTAACCGGACGGA 59.471 55.000 18.80 0.00 38.46 4.69
77 78 0.245539 ACATGTCAGTAACCGGACGG 59.754 55.000 9.46 9.56 38.46 4.79
78 79 1.068125 TGACATGTCAGTAACCGGACG 60.068 52.381 24.56 0.00 38.46 4.79
79 80 2.288579 TGTGACATGTCAGTAACCGGAC 60.289 50.000 28.54 13.72 40.75 4.79
80 81 1.964933 TGTGACATGTCAGTAACCGGA 59.035 47.619 28.54 0.28 40.75 5.14
81 82 2.448926 TGTGACATGTCAGTAACCGG 57.551 50.000 28.54 0.00 40.75 5.28
82 83 4.804608 TTTTGTGACATGTCAGTAACCG 57.195 40.909 28.54 0.00 40.75 4.44
83 84 6.970484 AGATTTTTGTGACATGTCAGTAACC 58.030 36.000 28.54 16.54 40.75 2.85
84 85 9.382244 GTTAGATTTTTGTGACATGTCAGTAAC 57.618 33.333 28.54 16.91 40.75 2.50
85 86 8.564574 GGTTAGATTTTTGTGACATGTCAGTAA 58.435 33.333 28.54 21.96 40.75 2.24
86 87 7.174253 GGGTTAGATTTTTGTGACATGTCAGTA 59.826 37.037 28.54 17.55 40.75 2.74
87 88 6.016276 GGGTTAGATTTTTGTGACATGTCAGT 60.016 38.462 28.54 10.57 40.75 3.41
88 89 6.016360 TGGGTTAGATTTTTGTGACATGTCAG 60.016 38.462 28.54 0.00 40.75 3.51
89 90 5.830457 TGGGTTAGATTTTTGTGACATGTCA 59.170 36.000 24.56 24.56 37.24 3.58
90 91 6.206634 TCTGGGTTAGATTTTTGTGACATGTC 59.793 38.462 19.27 19.27 0.00 3.06
91 92 6.016276 GTCTGGGTTAGATTTTTGTGACATGT 60.016 38.462 0.00 0.00 37.83 3.21
92 93 6.016360 TGTCTGGGTTAGATTTTTGTGACATG 60.016 38.462 0.00 0.00 37.83 3.21
93 94 6.068010 TGTCTGGGTTAGATTTTTGTGACAT 58.932 36.000 0.00 0.00 37.83 3.06
94 95 5.441500 TGTCTGGGTTAGATTTTTGTGACA 58.558 37.500 0.00 0.00 37.83 3.58
95 96 5.048713 CCTGTCTGGGTTAGATTTTTGTGAC 60.049 44.000 0.00 0.00 37.83 3.67
96 97 5.070001 CCTGTCTGGGTTAGATTTTTGTGA 58.930 41.667 0.00 0.00 37.83 3.58
97 98 4.827284 ACCTGTCTGGGTTAGATTTTTGTG 59.173 41.667 0.33 0.00 41.11 3.33
98 99 4.827284 CACCTGTCTGGGTTAGATTTTTGT 59.173 41.667 0.33 0.00 41.11 2.83
99 100 4.827284 ACACCTGTCTGGGTTAGATTTTTG 59.173 41.667 0.33 0.00 41.11 2.44
100 101 5.061721 ACACCTGTCTGGGTTAGATTTTT 57.938 39.130 0.33 0.00 41.11 1.94
101 102 4.652822 GACACCTGTCTGGGTTAGATTTT 58.347 43.478 0.33 0.00 41.65 1.82
102 103 4.287766 GACACCTGTCTGGGTTAGATTT 57.712 45.455 0.33 0.00 41.65 2.17
103 104 3.983044 GACACCTGTCTGGGTTAGATT 57.017 47.619 0.33 0.00 41.65 2.40
114 115 0.602905 CCCCGTTTGAGACACCTGTC 60.603 60.000 0.00 0.00 45.08 3.51
115 116 1.450211 CCCCGTTTGAGACACCTGT 59.550 57.895 0.00 0.00 0.00 4.00
116 117 1.966451 GCCCCGTTTGAGACACCTG 60.966 63.158 0.00 0.00 0.00 4.00
117 118 2.113243 GAGCCCCGTTTGAGACACCT 62.113 60.000 0.00 0.00 0.00 4.00
118 119 1.671379 GAGCCCCGTTTGAGACACC 60.671 63.158 0.00 0.00 0.00 4.16
119 120 0.534203 TTGAGCCCCGTTTGAGACAC 60.534 55.000 0.00 0.00 0.00 3.67
120 121 0.181587 TTTGAGCCCCGTTTGAGACA 59.818 50.000 0.00 0.00 0.00 3.41
121 122 1.200020 CATTTGAGCCCCGTTTGAGAC 59.800 52.381 0.00 0.00 0.00 3.36
122 123 1.202879 ACATTTGAGCCCCGTTTGAGA 60.203 47.619 0.00 0.00 0.00 3.27
123 124 1.200020 GACATTTGAGCCCCGTTTGAG 59.800 52.381 0.00 0.00 0.00 3.02
124 125 1.243902 GACATTTGAGCCCCGTTTGA 58.756 50.000 0.00 0.00 0.00 2.69
125 126 0.243636 GGACATTTGAGCCCCGTTTG 59.756 55.000 0.00 0.00 0.00 2.93
126 127 1.241315 CGGACATTTGAGCCCCGTTT 61.241 55.000 0.00 0.00 35.83 3.60
127 128 1.674322 CGGACATTTGAGCCCCGTT 60.674 57.895 0.00 0.00 35.83 4.44
128 129 2.046314 CGGACATTTGAGCCCCGT 60.046 61.111 0.00 0.00 35.83 5.28
129 130 2.824041 CCGGACATTTGAGCCCCG 60.824 66.667 0.00 0.00 39.85 5.73
130 131 2.440247 CCCGGACATTTGAGCCCC 60.440 66.667 0.73 0.00 0.00 5.80
131 132 0.034863 TAACCCGGACATTTGAGCCC 60.035 55.000 0.73 0.00 0.00 5.19
132 133 1.828979 TTAACCCGGACATTTGAGCC 58.171 50.000 0.73 0.00 0.00 4.70
133 134 2.031683 CGATTAACCCGGACATTTGAGC 59.968 50.000 0.73 0.00 0.00 4.26
134 135 3.308866 GTCGATTAACCCGGACATTTGAG 59.691 47.826 0.73 0.00 0.00 3.02
135 136 3.264104 GTCGATTAACCCGGACATTTGA 58.736 45.455 0.73 0.00 0.00 2.69
136 137 3.004171 TGTCGATTAACCCGGACATTTG 58.996 45.455 0.73 0.00 0.00 2.32
137 138 3.004862 GTGTCGATTAACCCGGACATTT 58.995 45.455 0.73 0.00 0.00 2.32
138 139 2.624636 GTGTCGATTAACCCGGACATT 58.375 47.619 0.73 0.00 0.00 2.71
139 140 1.134610 GGTGTCGATTAACCCGGACAT 60.135 52.381 0.73 0.00 0.00 3.06
140 141 0.247185 GGTGTCGATTAACCCGGACA 59.753 55.000 0.73 0.00 0.00 4.02
141 142 0.460811 GGGTGTCGATTAACCCGGAC 60.461 60.000 15.63 0.00 46.44 4.79
142 143 1.899617 GGGTGTCGATTAACCCGGA 59.100 57.895 15.63 0.00 46.44 5.14
143 144 4.526770 GGGTGTCGATTAACCCGG 57.473 61.111 15.63 0.00 46.44 5.73
146 147 0.533951 ACGAGGGGTGTCGATTAACC 59.466 55.000 0.00 6.39 42.85 2.85
147 148 2.480244 GGTACGAGGGGTGTCGATTAAC 60.480 54.545 0.00 0.00 42.85 2.01
148 149 1.750778 GGTACGAGGGGTGTCGATTAA 59.249 52.381 0.00 0.00 42.85 1.40
149 150 1.392589 GGTACGAGGGGTGTCGATTA 58.607 55.000 0.00 0.00 42.85 1.75
150 151 1.325476 GGGTACGAGGGGTGTCGATT 61.325 60.000 0.00 0.00 42.85 3.34
151 152 1.755783 GGGTACGAGGGGTGTCGAT 60.756 63.158 0.00 0.00 42.85 3.59
152 153 2.361610 GGGTACGAGGGGTGTCGA 60.362 66.667 0.00 0.00 42.85 4.20
153 154 2.677524 TGGGTACGAGGGGTGTCG 60.678 66.667 0.00 0.00 45.76 4.35
154 155 3.015312 GCTGGGTACGAGGGGTGTC 62.015 68.421 0.00 0.00 33.71 3.67
155 156 3.001406 GCTGGGTACGAGGGGTGT 61.001 66.667 0.00 0.00 33.71 4.16
156 157 3.782443 GGCTGGGTACGAGGGGTG 61.782 72.222 0.00 0.00 33.71 4.61
159 160 1.921869 ATTTGGGCTGGGTACGAGGG 61.922 60.000 0.00 0.00 33.71 4.30
160 161 0.834612 TATTTGGGCTGGGTACGAGG 59.165 55.000 0.00 0.00 33.71 4.63
161 162 2.104111 TCATATTTGGGCTGGGTACGAG 59.896 50.000 0.00 0.00 37.19 4.18
162 163 2.104111 CTCATATTTGGGCTGGGTACGA 59.896 50.000 0.00 0.00 0.00 3.43
163 164 2.494059 CTCATATTTGGGCTGGGTACG 58.506 52.381 0.00 0.00 0.00 3.67
164 165 2.174854 ACCTCATATTTGGGCTGGGTAC 59.825 50.000 0.00 0.00 0.00 3.34
165 166 2.174639 CACCTCATATTTGGGCTGGGTA 59.825 50.000 0.00 0.00 0.00 3.69
166 167 1.063717 CACCTCATATTTGGGCTGGGT 60.064 52.381 0.00 0.00 0.00 4.51
167 168 1.215173 TCACCTCATATTTGGGCTGGG 59.785 52.381 0.00 0.00 0.00 4.45
168 169 2.734755 TCACCTCATATTTGGGCTGG 57.265 50.000 0.00 0.00 0.00 4.85
169 170 5.184479 CCATATTCACCTCATATTTGGGCTG 59.816 44.000 0.00 0.00 0.00 4.85
170 171 5.327732 CCATATTCACCTCATATTTGGGCT 58.672 41.667 0.00 0.00 0.00 5.19
171 172 4.463891 CCCATATTCACCTCATATTTGGGC 59.536 45.833 0.00 0.00 34.98 5.36
172 173 5.018809 CCCCATATTCACCTCATATTTGGG 58.981 45.833 0.00 0.00 39.11 4.12
173 174 4.463891 GCCCCATATTCACCTCATATTTGG 59.536 45.833 0.00 0.00 0.00 3.28
174 175 4.156556 CGCCCCATATTCACCTCATATTTG 59.843 45.833 0.00 0.00 0.00 2.32
175 176 4.042809 TCGCCCCATATTCACCTCATATTT 59.957 41.667 0.00 0.00 0.00 1.40
176 177 3.587061 TCGCCCCATATTCACCTCATATT 59.413 43.478 0.00 0.00 0.00 1.28
177 178 3.181329 TCGCCCCATATTCACCTCATAT 58.819 45.455 0.00 0.00 0.00 1.78
178 179 2.615391 TCGCCCCATATTCACCTCATA 58.385 47.619 0.00 0.00 0.00 2.15
179 180 1.434188 TCGCCCCATATTCACCTCAT 58.566 50.000 0.00 0.00 0.00 2.90
180 181 1.072173 CATCGCCCCATATTCACCTCA 59.928 52.381 0.00 0.00 0.00 3.86
181 182 1.611673 CCATCGCCCCATATTCACCTC 60.612 57.143 0.00 0.00 0.00 3.85
182 183 0.401738 CCATCGCCCCATATTCACCT 59.598 55.000 0.00 0.00 0.00 4.00
183 184 1.244019 GCCATCGCCCCATATTCACC 61.244 60.000 0.00 0.00 0.00 4.02
184 185 2.257353 GCCATCGCCCCATATTCAC 58.743 57.895 0.00 0.00 0.00 3.18
185 186 4.819783 GCCATCGCCCCATATTCA 57.180 55.556 0.00 0.00 0.00 2.57
197 198 3.943479 TACGGTGTGCACGGCCATC 62.943 63.158 24.01 3.48 35.37 3.51
198 199 3.950794 CTACGGTGTGCACGGCCAT 62.951 63.158 24.01 15.27 35.37 4.40
199 200 4.673298 CTACGGTGTGCACGGCCA 62.673 66.667 24.01 9.62 35.37 5.36
200 201 4.367023 TCTACGGTGTGCACGGCC 62.367 66.667 13.13 15.61 35.37 6.13
201 202 2.809601 CTCTACGGTGTGCACGGC 60.810 66.667 13.13 7.53 35.37 5.68
202 203 2.809601 GCTCTACGGTGTGCACGG 60.810 66.667 13.13 6.59 37.61 4.94
203 204 3.172575 CGCTCTACGGTGTGCACG 61.173 66.667 13.13 2.55 38.44 5.34
213 214 1.784036 GCCCGACCTCTACGCTCTAC 61.784 65.000 0.00 0.00 0.00 2.59
214 215 1.525535 GCCCGACCTCTACGCTCTA 60.526 63.158 0.00 0.00 0.00 2.43
215 216 2.829458 GCCCGACCTCTACGCTCT 60.829 66.667 0.00 0.00 0.00 4.09
216 217 4.253257 CGCCCGACCTCTACGCTC 62.253 72.222 0.00 0.00 0.00 5.03
218 219 4.849329 CACGCCCGACCTCTACGC 62.849 72.222 0.00 0.00 0.00 4.42
219 220 4.849329 GCACGCCCGACCTCTACG 62.849 72.222 0.00 0.00 0.00 3.51
220 221 4.849329 CGCACGCCCGACCTCTAC 62.849 72.222 0.00 0.00 0.00 2.59
229 230 3.740128 ATCAGATCCACGCACGCCC 62.740 63.158 0.00 0.00 0.00 6.13
230 231 2.202932 ATCAGATCCACGCACGCC 60.203 61.111 0.00 0.00 0.00 5.68
231 232 2.580470 CGATCAGATCCACGCACGC 61.580 63.158 4.73 0.00 0.00 5.34
232 233 1.202973 GACGATCAGATCCACGCACG 61.203 60.000 4.73 0.00 0.00 5.34
233 234 0.101399 AGACGATCAGATCCACGCAC 59.899 55.000 4.73 0.00 0.00 5.34
234 235 1.604278 CTAGACGATCAGATCCACGCA 59.396 52.381 4.73 0.00 0.00 5.24
235 236 1.874231 TCTAGACGATCAGATCCACGC 59.126 52.381 4.73 0.00 0.00 5.34
236 237 3.879427 GTTCTAGACGATCAGATCCACG 58.121 50.000 4.73 0.00 0.00 4.94
254 255 4.725556 TCTAGAAACACAACATGCGTTC 57.274 40.909 0.00 0.00 31.13 3.95
280 281 4.651962 TGGTGATACATGGTTCCGAGATTA 59.348 41.667 0.00 0.00 0.00 1.75
286 287 3.278574 ACAATGGTGATACATGGTTCCG 58.721 45.455 0.00 0.00 30.91 4.30
309 310 2.053244 TGGTTTGTCCAATGCCCAATT 58.947 42.857 0.00 0.00 44.12 2.32
311 312 3.230608 TGGTTTGTCCAATGCCCAA 57.769 47.368 0.00 0.00 44.12 4.12
335 336 1.298859 GGATGACACGCCACCTTGTC 61.299 60.000 0.00 0.00 39.81 3.18
710 748 1.804151 GTCCACAATAACGCAGAAGCA 59.196 47.619 0.00 0.00 42.27 3.91
763 801 3.569690 CCGCGCCGTATTTCCACC 61.570 66.667 0.00 0.00 0.00 4.61
861 903 2.029623 GGTTATAGACAGACCAGGCGA 58.970 52.381 0.00 0.00 33.61 5.54
928 970 3.173240 GGCGTCGTCGTCTTCTGC 61.173 66.667 3.66 0.00 38.74 4.26
929 971 2.870161 CGGCGTCGTCGTCTTCTG 60.870 66.667 11.83 0.00 39.73 3.02
951 1014 4.605967 CTCTCTCGAGCTCCGCGC 62.606 72.222 7.81 0.00 38.37 6.86
952 1015 3.947841 CCTCTCTCGAGCTCCGCG 61.948 72.222 7.81 0.00 38.37 6.46
953 1016 4.264638 GCCTCTCTCGAGCTCCGC 62.265 72.222 7.81 3.03 38.37 5.54
956 1019 1.727467 GTCAGCCTCTCTCGAGCTC 59.273 63.158 7.81 2.73 35.90 4.09
957 1020 2.112198 CGTCAGCCTCTCTCGAGCT 61.112 63.158 7.81 0.00 35.90 4.09
1202 1296 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1203 1297 4.179599 GGGGAGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1206 1300 4.179599 GAGGGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1207 1301 4.179599 GGAGGGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1215 1309 3.151022 GAGACAGCGGAGGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
1224 1318 0.245539 TTTACGGGGAAGAGACAGCG 59.754 55.000 0.00 0.00 0.00 5.18
1289 1597 1.221840 CGGGTCAGGTCAATCCCAG 59.778 63.158 0.00 0.00 39.87 4.45
1567 1875 2.190578 GGGTCGATTGAGGCAGGG 59.809 66.667 0.00 0.00 0.00 4.45
1571 1879 2.506472 GGGAGGGTCGATTGAGGC 59.494 66.667 0.00 0.00 0.00 4.70
1572 1880 2.797278 CGGGGAGGGTCGATTGAGG 61.797 68.421 0.00 0.00 0.00 3.86
1573 1881 2.815308 CGGGGAGGGTCGATTGAG 59.185 66.667 0.00 0.00 0.00 3.02
1576 1884 4.798682 AGGCGGGGAGGGTCGATT 62.799 66.667 0.00 0.00 0.00 3.34
1624 1932 1.539388 CGTCAGCTCAGAAGTCAGAGT 59.461 52.381 3.09 0.00 32.79 3.24
1625 1933 1.809547 TCGTCAGCTCAGAAGTCAGAG 59.190 52.381 0.00 0.00 33.28 3.35
1629 1937 2.862512 CTTCTCGTCAGCTCAGAAGTC 58.137 52.381 10.94 0.00 38.81 3.01
1631 1939 1.067985 TGCTTCTCGTCAGCTCAGAAG 60.068 52.381 13.45 13.45 44.12 2.85
1632 1940 0.961753 TGCTTCTCGTCAGCTCAGAA 59.038 50.000 0.00 0.00 38.19 3.02
1633 1941 1.133982 GATGCTTCTCGTCAGCTCAGA 59.866 52.381 0.00 0.00 38.19 3.27
1638 1946 2.568696 TACAGATGCTTCTCGTCAGC 57.431 50.000 0.00 0.00 37.82 4.26
1646 1954 2.098117 GCACACCCAATACAGATGCTTC 59.902 50.000 0.00 0.00 0.00 3.86
1647 1955 2.094675 GCACACCCAATACAGATGCTT 58.905 47.619 0.00 0.00 0.00 3.91
1648 1956 1.755179 GCACACCCAATACAGATGCT 58.245 50.000 0.00 0.00 0.00 3.79
1651 1959 0.035534 TGCGCACACCCAATACAGAT 60.036 50.000 5.66 0.00 0.00 2.90
1652 1960 0.673333 CTGCGCACACCCAATACAGA 60.673 55.000 5.66 0.00 0.00 3.41
1653 1961 1.647545 CCTGCGCACACCCAATACAG 61.648 60.000 5.66 0.00 0.00 2.74
1654 1962 1.673993 CCTGCGCACACCCAATACA 60.674 57.895 5.66 0.00 0.00 2.29
1655 1963 2.406616 CCCTGCGCACACCCAATAC 61.407 63.158 5.66 0.00 0.00 1.89
1656 1964 2.045438 CCCTGCGCACACCCAATA 60.045 61.111 5.66 0.00 0.00 1.90
1657 1965 3.505790 TTCCCTGCGCACACCCAAT 62.506 57.895 5.66 0.00 0.00 3.16
1658 1966 4.196778 TTCCCTGCGCACACCCAA 62.197 61.111 5.66 0.00 0.00 4.12
1682 1990 2.606725 CACCAGCTTCATCTCGTCATTC 59.393 50.000 0.00 0.00 0.00 2.67
1685 1993 0.247460 CCACCAGCTTCATCTCGTCA 59.753 55.000 0.00 0.00 0.00 4.35
1906 2228 6.366877 CCAAGAGCCTGACAAACAAATTAATG 59.633 38.462 0.00 0.00 0.00 1.90
2014 2337 4.059511 CAACCAATCAATCAAGCAAGCAA 58.940 39.130 0.00 0.00 0.00 3.91
2015 2338 3.321396 TCAACCAATCAATCAAGCAAGCA 59.679 39.130 0.00 0.00 0.00 3.91
2016 2339 3.916761 TCAACCAATCAATCAAGCAAGC 58.083 40.909 0.00 0.00 0.00 4.01
2017 2340 6.160684 TCAATCAACCAATCAATCAAGCAAG 58.839 36.000 0.00 0.00 0.00 4.01
2018 2341 6.015265 TCTCAATCAACCAATCAATCAAGCAA 60.015 34.615 0.00 0.00 0.00 3.91
2019 2342 5.477637 TCTCAATCAACCAATCAATCAAGCA 59.522 36.000 0.00 0.00 0.00 3.91
2020 2343 5.957798 TCTCAATCAACCAATCAATCAAGC 58.042 37.500 0.00 0.00 0.00 4.01
2021 2344 7.915923 CAGATCTCAATCAACCAATCAATCAAG 59.084 37.037 0.00 0.00 34.07 3.02
2022 2345 7.629866 GCAGATCTCAATCAACCAATCAATCAA 60.630 37.037 0.00 0.00 34.07 2.57
2023 2346 6.183360 GCAGATCTCAATCAACCAATCAATCA 60.183 38.462 0.00 0.00 34.07 2.57
2029 2352 4.142534 CGTTGCAGATCTCAATCAACCAAT 60.143 41.667 15.34 0.00 35.03 3.16
2033 2356 3.002791 TCCGTTGCAGATCTCAATCAAC 58.997 45.455 12.87 12.87 34.07 3.18
2065 2388 4.201851 CCAAATCGTAAAGCATCAGTCCAG 60.202 45.833 0.00 0.00 0.00 3.86
2068 2391 4.946784 ACCAAATCGTAAAGCATCAGTC 57.053 40.909 0.00 0.00 0.00 3.51
2247 3505 7.857734 TTTAGATAAATGCAGACGGAATCAA 57.142 32.000 0.00 0.00 0.00 2.57
2320 3580 4.547671 TGGTATTCAGTTGGTTCCCAAAA 58.452 39.130 0.00 0.00 45.73 2.44
2358 3618 7.183112 TCAGGGGATAAAAGGACACTTATGTTA 59.817 37.037 0.00 0.00 39.95 2.41
2430 3691 6.159988 AGTAAATCAGGCAGAGTATATTCGC 58.840 40.000 0.00 4.35 0.00 4.70
2456 3721 6.037940 TGACATGAGCTCAAAAATAGAGATGC 59.962 38.462 22.50 7.20 35.09 3.91
2464 3729 4.768448 TGGATGTGACATGAGCTCAAAAAT 59.232 37.500 22.50 7.44 0.00 1.82
2528 3795 5.390991 GCAAGAATAACCGAGAAAGAACCAG 60.391 44.000 0.00 0.00 0.00 4.00
2585 3852 3.316308 GCTTAATGTGCCAGGGTAGAATG 59.684 47.826 0.00 0.00 0.00 2.67
2596 3863 4.990426 ACATCAAAGTTTGCTTAATGTGCC 59.010 37.500 15.91 0.00 33.95 5.01
2625 3894 2.859165 TGCCCTGTTACTGGAAAGAG 57.141 50.000 9.93 0.00 0.00 2.85
2645 3914 3.825014 GCTGATGGATAGGCATCATTGTT 59.175 43.478 0.00 0.00 37.23 2.83
2648 3917 2.039480 ACGCTGATGGATAGGCATCATT 59.961 45.455 0.00 0.00 37.23 2.57
2719 3988 6.971932 AGAAAGGAAACCTTATCCCTAGTT 57.028 37.500 3.40 0.00 43.92 2.24
2762 4031 6.879458 ACTATTGAAGGGTCACAGTGAATTAC 59.121 38.462 4.32 0.00 31.90 1.89
2821 4091 2.859165 ACTATCCACAACCCACACAG 57.141 50.000 0.00 0.00 0.00 3.66
2832 4102 1.369625 CAGACCGCCAAACTATCCAC 58.630 55.000 0.00 0.00 0.00 4.02
2833 4103 0.251916 CCAGACCGCCAAACTATCCA 59.748 55.000 0.00 0.00 0.00 3.41
2834 4104 1.095807 GCCAGACCGCCAAACTATCC 61.096 60.000 0.00 0.00 0.00 2.59
2861 4131 7.764901 ACCGAGATAAAAGATAACAAGGAGTTC 59.235 37.037 0.00 0.00 41.64 3.01
2863 4133 7.184067 ACCGAGATAAAAGATAACAAGGAGT 57.816 36.000 0.00 0.00 0.00 3.85
2864 4134 7.011482 CCAACCGAGATAAAAGATAACAAGGAG 59.989 40.741 0.00 0.00 0.00 3.69
2867 4137 7.843490 TCCAACCGAGATAAAAGATAACAAG 57.157 36.000 0.00 0.00 0.00 3.16
2869 4139 6.700081 CGATCCAACCGAGATAAAAGATAACA 59.300 38.462 0.00 0.00 0.00 2.41
2916 4186 2.413453 GCAAGAACACTTCTCGTCATCC 59.587 50.000 0.00 0.00 39.61 3.51
2935 4205 1.310904 GGTGTAACAAAAGTCCGGCA 58.689 50.000 0.00 0.00 39.98 5.69
2943 4213 4.200874 AGGAATGTGTCGGTGTAACAAAA 58.799 39.130 0.00 0.00 39.98 2.44
2944 4214 3.811083 AGGAATGTGTCGGTGTAACAAA 58.189 40.909 0.00 0.00 39.98 2.83
2992 4262 1.988107 AGGCTTCCTCAAACATCCTGA 59.012 47.619 0.00 0.00 0.00 3.86
3063 4333 3.425938 GAAAGCGACCGAGCATGCG 62.426 63.158 13.01 0.00 40.15 4.73
3077 4349 4.070581 AGCATGAAAATCGTGTCGAAAG 57.929 40.909 0.00 0.00 39.99 2.62
3130 4406 1.945394 AGCGAATCAACATGGCTGATC 59.055 47.619 11.67 6.35 32.26 2.92
3280 4570 3.507622 AGAGCATCAAGTAAACCCAAAGC 59.492 43.478 0.00 0.00 37.82 3.51
3370 4663 6.762333 TCACCATCACCATCTTCTATATGTG 58.238 40.000 0.00 0.00 0.00 3.21
3398 4691 7.553044 GTGTATATTTCAAGCTCCCAGTACTTT 59.447 37.037 0.00 0.00 0.00 2.66
3399 4692 7.048512 GTGTATATTTCAAGCTCCCAGTACTT 58.951 38.462 0.00 0.00 0.00 2.24
3400 4693 6.408206 GGTGTATATTTCAAGCTCCCAGTACT 60.408 42.308 0.00 0.00 0.00 2.73
3401 4694 5.758784 GGTGTATATTTCAAGCTCCCAGTAC 59.241 44.000 0.00 0.00 0.00 2.73
3431 4724 9.660180 AAACAAACAAACCAACAAACTATATGT 57.340 25.926 0.00 0.00 0.00 2.29
3432 4725 9.913451 CAAACAAACAAACCAACAAACTATATG 57.087 29.630 0.00 0.00 0.00 1.78
3433 4726 9.660180 ACAAACAAACAAACCAACAAACTATAT 57.340 25.926 0.00 0.00 0.00 0.86
3435 4728 7.875554 AGACAAACAAACAAACCAACAAACTAT 59.124 29.630 0.00 0.00 0.00 2.12
3436 4729 7.210873 AGACAAACAAACAAACCAACAAACTA 58.789 30.769 0.00 0.00 0.00 2.24
3438 4731 6.201997 AGAGACAAACAAACAAACCAACAAAC 59.798 34.615 0.00 0.00 0.00 2.93
3439 4732 6.284459 AGAGACAAACAAACAAACCAACAAA 58.716 32.000 0.00 0.00 0.00 2.83
3441 4734 5.461032 AGAGACAAACAAACAAACCAACA 57.539 34.783 0.00 0.00 0.00 3.33
3442 4735 5.923684 TCAAGAGACAAACAAACAAACCAAC 59.076 36.000 0.00 0.00 0.00 3.77
3443 4736 6.090483 TCAAGAGACAAACAAACAAACCAA 57.910 33.333 0.00 0.00 0.00 3.67
3444 4737 5.713792 TCAAGAGACAAACAAACAAACCA 57.286 34.783 0.00 0.00 0.00 3.67
3445 4738 6.329496 TCATCAAGAGACAAACAAACAAACC 58.671 36.000 0.00 0.00 0.00 3.27
3480 4773 3.006967 AGAGAACACCGAGTAATGCAAGT 59.993 43.478 0.00 0.00 0.00 3.16
3487 4780 0.388134 GCGCAGAGAACACCGAGTAA 60.388 55.000 0.30 0.00 0.00 2.24
3488 4781 1.211969 GCGCAGAGAACACCGAGTA 59.788 57.895 0.30 0.00 0.00 2.59
3495 4789 2.355837 GACGGTGCGCAGAGAACA 60.356 61.111 12.22 0.00 0.00 3.18
3510 4816 2.578981 GGTAACCTCGCTCGCGAC 60.579 66.667 3.71 1.04 44.01 5.19
3511 4817 2.749044 AGGTAACCTCGCTCGCGA 60.749 61.111 9.26 9.26 46.17 5.87
3512 4818 2.579787 CAGGTAACCTCGCTCGCG 60.580 66.667 0.00 0.00 37.99 5.87
3513 4819 1.805945 CACAGGTAACCTCGCTCGC 60.806 63.158 0.00 0.00 37.17 5.03
3514 4820 0.456312 GTCACAGGTAACCTCGCTCG 60.456 60.000 0.00 0.00 37.17 5.03
3515 4821 0.601558 TGTCACAGGTAACCTCGCTC 59.398 55.000 0.00 0.00 37.17 5.03
3518 4824 0.677288 TGGTGTCACAGGTAACCTCG 59.323 55.000 5.12 0.00 33.65 4.63
3578 4884 4.380339 CCATCACTTGACACACACACAAAA 60.380 41.667 0.00 0.00 0.00 2.44
3579 4885 3.128415 CCATCACTTGACACACACACAAA 59.872 43.478 0.00 0.00 0.00 2.83
3580 4886 2.682352 CCATCACTTGACACACACACAA 59.318 45.455 0.00 0.00 0.00 3.33
3581 4887 2.287769 CCATCACTTGACACACACACA 58.712 47.619 0.00 0.00 0.00 3.72
3582 4888 2.288666 ACCATCACTTGACACACACAC 58.711 47.619 0.00 0.00 0.00 3.82
3583 4889 2.708216 ACCATCACTTGACACACACA 57.292 45.000 0.00 0.00 0.00 3.72
3584 4890 4.370364 AAAACCATCACTTGACACACAC 57.630 40.909 0.00 0.00 0.00 3.82
3585 4891 4.219507 ACAAAAACCATCACTTGACACACA 59.780 37.500 0.00 0.00 0.00 3.72
3586 4892 4.743493 ACAAAAACCATCACTTGACACAC 58.257 39.130 0.00 0.00 0.00 3.82
3623 4929 6.109359 GGACACATTTCTTACAGTCTAGCAT 58.891 40.000 0.00 0.00 0.00 3.79
3625 4931 5.348997 GTGGACACATTTCTTACAGTCTAGC 59.651 44.000 0.00 0.00 0.00 3.42
3626 4932 5.573282 CGTGGACACATTTCTTACAGTCTAG 59.427 44.000 3.12 0.00 0.00 2.43
3661 4972 5.363292 TGCACCATACATCCAAATTAGCAAT 59.637 36.000 0.00 0.00 0.00 3.56
3662 4973 4.708909 TGCACCATACATCCAAATTAGCAA 59.291 37.500 0.00 0.00 0.00 3.91
3664 4975 4.916983 TGCACCATACATCCAAATTAGC 57.083 40.909 0.00 0.00 0.00 3.09
3665 4976 8.456471 CAGATATGCACCATACATCCAAATTAG 58.544 37.037 0.00 0.00 0.00 1.73
3749 5061 4.099881 CCCATTTTGAATGACCGATCCATT 59.900 41.667 2.37 0.00 36.98 3.16
3750 5062 3.638160 CCCATTTTGAATGACCGATCCAT 59.362 43.478 2.37 0.00 0.00 3.41
3755 5067 1.181786 GCCCCATTTTGAATGACCGA 58.818 50.000 2.37 0.00 0.00 4.69
3756 5068 0.175531 GGCCCCATTTTGAATGACCG 59.824 55.000 0.00 0.00 0.00 4.79
3951 5275 2.739943 CAAAGGGAAGGAAAGGGGATC 58.260 52.381 0.00 0.00 0.00 3.36
3957 5281 2.560105 CCTCAAGCAAAGGGAAGGAAAG 59.440 50.000 0.00 0.00 0.00 2.62
4003 5327 1.457823 AAAAGGGCCGAAAACGACCC 61.458 55.000 5.91 5.91 43.17 4.46
4015 5339 2.048222 GAAAGGCGGCAAAAGGGC 60.048 61.111 13.08 0.00 39.06 5.19
4026 5350 3.056328 GTGACTGGCGGGAAAGGC 61.056 66.667 0.00 0.00 37.19 4.35
4075 5399 1.617947 AAGCCGGTCTGGTCTGATCC 61.618 60.000 1.90 0.00 41.21 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.