Multiple sequence alignment - TraesCS3A01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G121200 chr3A 100.000 3413 0 0 1 3413 95360674 95357262 0.000000e+00 6303.0
1 TraesCS3A01G121200 chr3A 89.749 1795 138 21 828 2595 95127541 95125766 0.000000e+00 2254.0
2 TraesCS3A01G121200 chr3A 90.668 1586 110 15 868 2431 95134605 95133036 0.000000e+00 2074.0
3 TraesCS3A01G121200 chr3A 83.237 1563 204 32 842 2373 94859287 94857752 0.000000e+00 1382.0
4 TraesCS3A01G121200 chr3A 87.487 983 115 6 1432 2410 94254833 94253855 0.000000e+00 1127.0
5 TraesCS3A01G121200 chr3A 96.684 392 10 2 1 392 13123928 13123540 0.000000e+00 649.0
6 TraesCS3A01G121200 chr3A 85.678 391 30 11 3043 3413 95130989 95130605 4.130000e-104 388.0
7 TraesCS3A01G121200 chr3A 97.790 181 4 0 1 181 13132598 13132418 2.560000e-81 313.0
8 TraesCS3A01G121200 chr3A 96.335 191 4 2 202 392 13127864 13127677 9.200000e-81 311.0
9 TraesCS3A01G121200 chr3A 85.811 296 34 5 443 732 95128228 95127935 1.190000e-79 307.0
10 TraesCS3A01G121200 chr3A 91.584 202 12 4 2651 2852 95131544 95131348 1.210000e-69 274.0
11 TraesCS3A01G121200 chr3A 92.308 143 9 1 2491 2631 95131673 95131531 5.780000e-48 202.0
12 TraesCS3A01G121200 chr3D 94.689 2203 95 11 429 2619 81122753 81120561 0.000000e+00 3400.0
13 TraesCS3A01G121200 chr3D 87.540 947 108 7 1432 2373 80917031 80916090 0.000000e+00 1086.0
14 TraesCS3A01G121200 chr3D 85.903 986 129 7 1432 2412 80600902 80599922 0.000000e+00 1042.0
15 TraesCS3A01G121200 chr3D 88.755 747 51 8 793 1524 81057929 81057201 0.000000e+00 883.0
16 TraesCS3A01G121200 chr3D 81.407 597 89 14 843 1436 80917640 80917063 5.160000e-128 468.0
17 TraesCS3A01G121200 chr3D 89.597 298 28 2 437 732 81058513 81058217 3.220000e-100 375.0
18 TraesCS3A01G121200 chr3D 82.799 343 33 11 3078 3413 81120088 81119765 2.000000e-72 283.0
19 TraesCS3A01G121200 chr3D 90.909 99 6 2 2652 2747 81120399 81120301 2.760000e-26 130.0
20 TraesCS3A01G121200 chr3B 91.681 2248 97 25 439 2631 126734163 126731951 0.000000e+00 3033.0
21 TraesCS3A01G121200 chr3B 88.172 2029 174 31 840 2849 126664732 126662751 0.000000e+00 2357.0
22 TraesCS3A01G121200 chr3B 83.780 1566 198 26 843 2373 126400941 126399397 0.000000e+00 1434.0
23 TraesCS3A01G121200 chr3B 84.300 1414 181 12 996 2381 126459015 126457615 0.000000e+00 1343.0
24 TraesCS3A01G121200 chr3B 90.805 696 32 9 1956 2631 126714405 126713722 0.000000e+00 902.0
25 TraesCS3A01G121200 chr3B 94.128 545 25 3 847 1388 126715202 126714662 0.000000e+00 822.0
26 TraesCS3A01G121200 chr3B 86.016 758 53 14 439 1165 126755901 126755166 0.000000e+00 763.0
27 TraesCS3A01G121200 chr3B 82.864 426 47 11 2999 3404 126713235 126712816 3.240000e-95 359.0
28 TraesCS3A01G121200 chr3B 90.535 243 20 2 445 685 126665319 126665078 5.500000e-83 318.0
29 TraesCS3A01G121200 chr4A 95.939 394 13 2 1 394 59276576 59276186 1.340000e-178 636.0
30 TraesCS3A01G121200 chr7B 94.697 396 18 2 1 396 72295896 72295504 2.250000e-171 612.0
31 TraesCS3A01G121200 chr7B 92.929 396 25 2 1 396 701308993 701308601 1.060000e-159 573.0
32 TraesCS3A01G121200 chr7B 76.351 148 29 5 158 302 84553995 84554139 1.310000e-09 75.0
33 TraesCS3A01G121200 chr2B 76.027 146 33 2 158 302 640692318 640692174 1.310000e-09 75.0
34 TraesCS3A01G121200 chr6B 75.342 146 34 2 158 302 278276665 278276521 6.110000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G121200 chr3A 95357262 95360674 3412 True 6303.000000 6303 100.000000 1 3413 1 chr3A.!!$R4 3412
1 TraesCS3A01G121200 chr3A 94857752 94859287 1535 True 1382.000000 1382 83.237000 842 2373 1 chr3A.!!$R3 1531
2 TraesCS3A01G121200 chr3A 94253855 94254833 978 True 1127.000000 1127 87.487000 1432 2410 1 chr3A.!!$R2 978
3 TraesCS3A01G121200 chr3A 95125766 95134605 8839 True 916.500000 2254 89.299667 443 3413 6 chr3A.!!$R6 2970
4 TraesCS3A01G121200 chr3A 13123540 13127864 4324 True 480.000000 649 96.509500 1 392 2 chr3A.!!$R5 391
5 TraesCS3A01G121200 chr3D 81119765 81122753 2988 True 1271.000000 3400 89.465667 429 3413 3 chr3D.!!$R4 2984
6 TraesCS3A01G121200 chr3D 80599922 80600902 980 True 1042.000000 1042 85.903000 1432 2412 1 chr3D.!!$R1 980
7 TraesCS3A01G121200 chr3D 80916090 80917640 1550 True 777.000000 1086 84.473500 843 2373 2 chr3D.!!$R2 1530
8 TraesCS3A01G121200 chr3D 81057201 81058513 1312 True 629.000000 883 89.176000 437 1524 2 chr3D.!!$R3 1087
9 TraesCS3A01G121200 chr3B 126731951 126734163 2212 True 3033.000000 3033 91.681000 439 2631 1 chr3B.!!$R3 2192
10 TraesCS3A01G121200 chr3B 126399397 126400941 1544 True 1434.000000 1434 83.780000 843 2373 1 chr3B.!!$R1 1530
11 TraesCS3A01G121200 chr3B 126457615 126459015 1400 True 1343.000000 1343 84.300000 996 2381 1 chr3B.!!$R2 1385
12 TraesCS3A01G121200 chr3B 126662751 126665319 2568 True 1337.500000 2357 89.353500 445 2849 2 chr3B.!!$R5 2404
13 TraesCS3A01G121200 chr3B 126755166 126755901 735 True 763.000000 763 86.016000 439 1165 1 chr3B.!!$R4 726
14 TraesCS3A01G121200 chr3B 126712816 126715202 2386 True 694.333333 902 89.265667 847 3404 3 chr3B.!!$R6 2557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 4182 0.098728 CGGTCGCAAAATAAGGCCAG 59.901 55.0 5.01 0.0 0.00 4.85 F
246 4183 0.179137 GGTCGCAAAATAAGGCCAGC 60.179 55.0 5.01 0.0 0.00 4.85 F
260 4197 0.248702 GCCAGCGACAGTCTAGCTAC 60.249 60.0 2.92 0.0 39.48 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 13430 1.202770 ACAAGTGGGTCTAAAAGCGCT 60.203 47.619 2.64 2.64 0.00 5.92 R
2275 13800 1.490693 CCAATGATCGACGCCGGAAG 61.491 60.000 5.05 0.00 36.24 3.46 R
2490 14033 3.713288 TCGCGAGTTACATTATTCTGGG 58.287 45.455 3.71 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 3991 2.079088 TTTGTGCCTGCATGGAGGGA 62.079 55.000 31.75 28.02 38.35 4.20
72 4009 5.124776 GGAGGGACTATCATCGTCTATTCAG 59.875 48.000 0.00 0.00 41.55 3.02
114 4051 4.694509 GCTATTGAGGTGGATTCTGCTATG 59.305 45.833 0.00 0.00 0.00 2.23
115 4052 3.565764 TTGAGGTGGATTCTGCTATGG 57.434 47.619 0.00 0.00 0.00 2.74
116 4053 2.481441 TGAGGTGGATTCTGCTATGGT 58.519 47.619 0.00 0.00 0.00 3.55
117 4054 2.171237 TGAGGTGGATTCTGCTATGGTG 59.829 50.000 0.00 0.00 0.00 4.17
118 4055 1.492176 AGGTGGATTCTGCTATGGTGG 59.508 52.381 0.00 0.00 0.00 4.61
119 4056 1.212935 GGTGGATTCTGCTATGGTGGT 59.787 52.381 0.00 0.00 0.00 4.16
120 4057 2.292267 GTGGATTCTGCTATGGTGGTG 58.708 52.381 0.00 0.00 0.00 4.17
121 4058 1.212688 TGGATTCTGCTATGGTGGTGG 59.787 52.381 0.00 0.00 0.00 4.61
122 4059 1.312815 GATTCTGCTATGGTGGTGGC 58.687 55.000 0.00 0.00 0.00 5.01
123 4060 0.106519 ATTCTGCTATGGTGGTGGCC 60.107 55.000 0.00 0.00 0.00 5.36
124 4061 1.496444 TTCTGCTATGGTGGTGGCCA 61.496 55.000 0.00 0.00 43.48 5.36
130 4067 2.009236 ATGGTGGTGGCCATGATCA 58.991 52.632 9.72 5.38 46.63 2.92
131 4068 0.396139 ATGGTGGTGGCCATGATCAC 60.396 55.000 9.72 15.09 46.63 3.06
132 4069 1.304282 GGTGGTGGCCATGATCACT 59.696 57.895 9.72 0.00 35.28 3.41
133 4070 1.033746 GGTGGTGGCCATGATCACTG 61.034 60.000 9.72 0.00 35.28 3.66
134 4071 1.033746 GTGGTGGCCATGATCACTGG 61.034 60.000 9.72 15.80 35.28 4.00
135 4072 1.304282 GGTGGCCATGATCACTGGT 59.696 57.895 9.72 0.00 36.10 4.00
136 4073 1.033746 GGTGGCCATGATCACTGGTG 61.034 60.000 9.72 6.56 36.10 4.17
137 4074 1.033746 GTGGCCATGATCACTGGTGG 61.034 60.000 9.72 14.66 36.10 4.61
138 4075 1.454479 GGCCATGATCACTGGTGGG 60.454 63.158 19.16 7.98 36.10 4.61
139 4076 1.454479 GCCATGATCACTGGTGGGG 60.454 63.158 19.16 6.61 36.10 4.96
140 4077 1.925285 GCCATGATCACTGGTGGGGA 61.925 60.000 19.16 0.00 36.10 4.81
141 4078 0.848735 CCATGATCACTGGTGGGGAT 59.151 55.000 0.00 0.00 0.00 3.85
142 4079 2.057140 CCATGATCACTGGTGGGGATA 58.943 52.381 0.00 0.00 0.00 2.59
143 4080 2.646297 CCATGATCACTGGTGGGGATAT 59.354 50.000 0.00 0.00 0.00 1.63
144 4081 3.560668 CCATGATCACTGGTGGGGATATG 60.561 52.174 0.00 0.00 0.00 1.78
145 4082 3.059051 TGATCACTGGTGGGGATATGA 57.941 47.619 0.00 0.00 0.00 2.15
146 4083 3.392730 TGATCACTGGTGGGGATATGAA 58.607 45.455 0.00 0.00 0.00 2.57
147 4084 3.136443 TGATCACTGGTGGGGATATGAAC 59.864 47.826 0.00 0.00 0.00 3.18
148 4085 1.843851 TCACTGGTGGGGATATGAACC 59.156 52.381 0.70 0.00 0.00 3.62
149 4086 0.837272 ACTGGTGGGGATATGAACCG 59.163 55.000 0.00 0.00 35.33 4.44
150 4087 0.837272 CTGGTGGGGATATGAACCGT 59.163 55.000 0.00 0.00 35.33 4.83
151 4088 1.211949 CTGGTGGGGATATGAACCGTT 59.788 52.381 0.00 0.00 35.33 4.44
152 4089 1.210967 TGGTGGGGATATGAACCGTTC 59.789 52.381 4.18 4.18 35.33 3.95
153 4090 1.210967 GGTGGGGATATGAACCGTTCA 59.789 52.381 16.15 16.15 45.01 3.18
154 4091 2.561569 GTGGGGATATGAACCGTTCAG 58.438 52.381 18.46 0.00 43.98 3.02
155 4092 1.134220 TGGGGATATGAACCGTTCAGC 60.134 52.381 18.46 10.54 43.98 4.26
156 4093 1.217882 GGGATATGAACCGTTCAGCG 58.782 55.000 18.46 0.00 43.98 5.18
157 4094 1.472728 GGGATATGAACCGTTCAGCGT 60.473 52.381 18.46 7.63 43.98 5.07
158 4095 2.223876 GGGATATGAACCGTTCAGCGTA 60.224 50.000 18.46 7.65 43.98 4.42
159 4096 3.554337 GGGATATGAACCGTTCAGCGTAT 60.554 47.826 18.46 11.69 43.98 3.06
160 4097 3.428870 GGATATGAACCGTTCAGCGTATG 59.571 47.826 18.46 0.00 43.98 2.39
161 4098 1.006832 ATGAACCGTTCAGCGTATGC 58.993 50.000 18.46 0.00 43.98 3.14
178 4115 7.464830 GCGTATGCTTCTTTAGTTAATGAGA 57.535 36.000 0.00 0.00 38.39 3.27
179 4116 8.077836 GCGTATGCTTCTTTAGTTAATGAGAT 57.922 34.615 0.00 0.00 38.39 2.75
180 4117 8.552034 GCGTATGCTTCTTTAGTTAATGAGATT 58.448 33.333 0.00 0.00 38.39 2.40
200 4137 9.058174 TGAGATTAGATACCTTCTTACTCTTCG 57.942 37.037 0.00 0.00 35.79 3.79
201 4138 8.398878 AGATTAGATACCTTCTTACTCTTCGG 57.601 38.462 0.00 0.00 35.79 4.30
202 4139 4.922471 AGATACCTTCTTACTCTTCGGC 57.078 45.455 0.00 0.00 0.00 5.54
203 4140 4.279145 AGATACCTTCTTACTCTTCGGCA 58.721 43.478 0.00 0.00 0.00 5.69
204 4141 4.710375 AGATACCTTCTTACTCTTCGGCAA 59.290 41.667 0.00 0.00 0.00 4.52
205 4142 3.983044 ACCTTCTTACTCTTCGGCAAT 57.017 42.857 0.00 0.00 0.00 3.56
206 4143 3.863041 ACCTTCTTACTCTTCGGCAATC 58.137 45.455 0.00 0.00 0.00 2.67
207 4144 3.515901 ACCTTCTTACTCTTCGGCAATCT 59.484 43.478 0.00 0.00 0.00 2.40
208 4145 4.020128 ACCTTCTTACTCTTCGGCAATCTT 60.020 41.667 0.00 0.00 0.00 2.40
209 4146 5.187186 ACCTTCTTACTCTTCGGCAATCTTA 59.813 40.000 0.00 0.00 0.00 2.10
210 4147 6.127026 ACCTTCTTACTCTTCGGCAATCTTAT 60.127 38.462 0.00 0.00 0.00 1.73
211 4148 7.069578 ACCTTCTTACTCTTCGGCAATCTTATA 59.930 37.037 0.00 0.00 0.00 0.98
212 4149 8.091449 CCTTCTTACTCTTCGGCAATCTTATAT 58.909 37.037 0.00 0.00 0.00 0.86
213 4150 9.482627 CTTCTTACTCTTCGGCAATCTTATATT 57.517 33.333 0.00 0.00 0.00 1.28
215 4152 9.909644 TCTTACTCTTCGGCAATCTTATATTAC 57.090 33.333 0.00 0.00 0.00 1.89
216 4153 9.915629 CTTACTCTTCGGCAATCTTATATTACT 57.084 33.333 0.00 0.00 0.00 2.24
217 4154 9.909644 TTACTCTTCGGCAATCTTATATTACTC 57.090 33.333 0.00 0.00 0.00 2.59
218 4155 7.952671 ACTCTTCGGCAATCTTATATTACTCA 58.047 34.615 0.00 0.00 0.00 3.41
219 4156 8.589338 ACTCTTCGGCAATCTTATATTACTCAT 58.411 33.333 0.00 0.00 0.00 2.90
220 4157 8.763049 TCTTCGGCAATCTTATATTACTCATG 57.237 34.615 0.00 0.00 0.00 3.07
221 4158 8.367911 TCTTCGGCAATCTTATATTACTCATGT 58.632 33.333 0.00 0.00 0.00 3.21
222 4159 8.902540 TTCGGCAATCTTATATTACTCATGTT 57.097 30.769 0.00 0.00 0.00 2.71
223 4160 8.902540 TCGGCAATCTTATATTACTCATGTTT 57.097 30.769 0.00 0.00 0.00 2.83
224 4161 8.988934 TCGGCAATCTTATATTACTCATGTTTC 58.011 33.333 0.00 0.00 0.00 2.78
225 4162 7.952101 CGGCAATCTTATATTACTCATGTTTCG 59.048 37.037 0.00 0.00 0.00 3.46
226 4163 7.746475 GGCAATCTTATATTACTCATGTTTCGC 59.254 37.037 0.00 0.00 0.00 4.70
227 4164 7.475565 GCAATCTTATATTACTCATGTTTCGCG 59.524 37.037 0.00 0.00 0.00 5.87
228 4165 7.582435 ATCTTATATTACTCATGTTTCGCGG 57.418 36.000 6.13 0.00 0.00 6.46
229 4166 6.509656 TCTTATATTACTCATGTTTCGCGGT 58.490 36.000 6.13 0.00 0.00 5.68
230 4167 6.639686 TCTTATATTACTCATGTTTCGCGGTC 59.360 38.462 6.13 0.00 0.00 4.79
231 4168 1.342555 TTACTCATGTTTCGCGGTCG 58.657 50.000 6.13 0.00 0.00 4.79
232 4169 1.074319 TACTCATGTTTCGCGGTCGC 61.074 55.000 6.13 5.16 35.26 5.19
233 4170 2.356433 TCATGTTTCGCGGTCGCA 60.356 55.556 15.68 0.68 42.06 5.10
234 4171 1.896339 CTCATGTTTCGCGGTCGCAA 61.896 55.000 15.68 6.21 42.06 4.85
235 4172 1.082431 CATGTTTCGCGGTCGCAAA 60.082 52.632 15.68 11.33 42.06 3.68
236 4173 0.658829 CATGTTTCGCGGTCGCAAAA 60.659 50.000 15.68 6.76 42.06 2.44
237 4174 0.239879 ATGTTTCGCGGTCGCAAAAT 59.760 45.000 15.68 1.17 42.06 1.82
238 4175 0.866427 TGTTTCGCGGTCGCAAAATA 59.134 45.000 15.68 5.20 42.06 1.40
239 4176 1.263484 TGTTTCGCGGTCGCAAAATAA 59.737 42.857 15.68 0.31 42.06 1.40
240 4177 1.902504 GTTTCGCGGTCGCAAAATAAG 59.097 47.619 15.68 0.00 42.06 1.73
241 4178 0.444651 TTCGCGGTCGCAAAATAAGG 59.555 50.000 15.68 0.00 42.06 2.69
242 4179 1.582680 CGCGGTCGCAAAATAAGGC 60.583 57.895 15.68 0.00 42.06 4.35
243 4180 1.226575 GCGGTCGCAAAATAAGGCC 60.227 57.895 10.67 0.00 41.49 5.19
244 4181 1.928706 GCGGTCGCAAAATAAGGCCA 61.929 55.000 5.01 0.00 41.49 5.36
245 4182 0.098728 CGGTCGCAAAATAAGGCCAG 59.901 55.000 5.01 0.00 0.00 4.85
246 4183 0.179137 GGTCGCAAAATAAGGCCAGC 60.179 55.000 5.01 0.00 0.00 4.85
247 4184 0.523335 GTCGCAAAATAAGGCCAGCG 60.523 55.000 5.01 8.98 45.79 5.18
249 4186 3.329114 GCAAAATAAGGCCAGCGAC 57.671 52.632 5.01 0.00 0.00 5.19
250 4187 0.525761 GCAAAATAAGGCCAGCGACA 59.474 50.000 5.01 0.00 0.00 4.35
251 4188 1.468054 GCAAAATAAGGCCAGCGACAG 60.468 52.381 5.01 0.00 0.00 3.51
252 4189 1.812571 CAAAATAAGGCCAGCGACAGT 59.187 47.619 5.01 0.00 0.00 3.55
253 4190 1.739067 AAATAAGGCCAGCGACAGTC 58.261 50.000 5.01 0.00 0.00 3.51
254 4191 0.905357 AATAAGGCCAGCGACAGTCT 59.095 50.000 5.01 0.00 0.00 3.24
255 4192 1.776662 ATAAGGCCAGCGACAGTCTA 58.223 50.000 5.01 0.00 0.00 2.59
256 4193 1.103803 TAAGGCCAGCGACAGTCTAG 58.896 55.000 5.01 0.00 0.00 2.43
257 4194 2.202810 GGCCAGCGACAGTCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
258 4195 2.716017 GGCCAGCGACAGTCTAGCT 61.716 63.158 0.00 0.00 42.64 3.32
259 4196 1.384989 GGCCAGCGACAGTCTAGCTA 61.385 60.000 0.00 0.00 39.48 3.32
260 4197 0.248702 GCCAGCGACAGTCTAGCTAC 60.249 60.000 2.92 0.00 39.48 3.58
261 4198 1.384525 CCAGCGACAGTCTAGCTACT 58.615 55.000 2.92 0.00 39.48 2.57
262 4199 1.746220 CCAGCGACAGTCTAGCTACTT 59.254 52.381 2.92 0.00 39.48 2.24
263 4200 2.164624 CCAGCGACAGTCTAGCTACTTT 59.835 50.000 2.92 0.00 39.48 2.66
264 4201 3.367498 CCAGCGACAGTCTAGCTACTTTT 60.367 47.826 2.92 0.00 39.48 2.27
265 4202 3.610242 CAGCGACAGTCTAGCTACTTTTG 59.390 47.826 2.92 0.00 39.48 2.44
266 4203 2.924290 GCGACAGTCTAGCTACTTTTGG 59.076 50.000 0.00 0.00 0.00 3.28
267 4204 3.614390 GCGACAGTCTAGCTACTTTTGGT 60.614 47.826 0.00 0.00 0.00 3.67
268 4205 4.380233 GCGACAGTCTAGCTACTTTTGGTA 60.380 45.833 0.00 0.00 0.00 3.25
279 4216 2.339769 ACTTTTGGTAGAGCTCAGGGT 58.660 47.619 17.77 0.00 0.00 4.34
280 4217 3.517612 ACTTTTGGTAGAGCTCAGGGTA 58.482 45.455 17.77 0.00 0.00 3.69
281 4218 3.515901 ACTTTTGGTAGAGCTCAGGGTAG 59.484 47.826 17.77 6.62 0.00 3.18
282 4219 2.160721 TTGGTAGAGCTCAGGGTAGG 57.839 55.000 17.77 0.00 0.00 3.18
283 4220 1.305886 TGGTAGAGCTCAGGGTAGGA 58.694 55.000 17.77 0.00 0.00 2.94
284 4221 1.063867 TGGTAGAGCTCAGGGTAGGAC 60.064 57.143 17.77 0.49 0.00 3.85
285 4222 1.215924 GGTAGAGCTCAGGGTAGGACT 59.784 57.143 17.77 0.00 0.00 3.85
286 4223 2.358405 GGTAGAGCTCAGGGTAGGACTT 60.358 54.545 17.77 0.00 0.00 3.01
287 4224 2.632763 AGAGCTCAGGGTAGGACTTT 57.367 50.000 17.77 0.00 0.00 2.66
288 4225 2.183679 AGAGCTCAGGGTAGGACTTTG 58.816 52.381 17.77 0.00 0.00 2.77
289 4226 2.180276 GAGCTCAGGGTAGGACTTTGA 58.820 52.381 9.40 0.00 0.00 2.69
290 4227 1.903183 AGCTCAGGGTAGGACTTTGAC 59.097 52.381 0.00 0.00 0.00 3.18
291 4228 1.903183 GCTCAGGGTAGGACTTTGACT 59.097 52.381 0.00 0.00 0.00 3.41
292 4229 2.303311 GCTCAGGGTAGGACTTTGACTT 59.697 50.000 0.00 0.00 0.00 3.01
293 4230 3.866449 GCTCAGGGTAGGACTTTGACTTG 60.866 52.174 0.00 0.00 0.00 3.16
294 4231 2.637872 TCAGGGTAGGACTTTGACTTGG 59.362 50.000 0.00 0.00 0.00 3.61
295 4232 2.637872 CAGGGTAGGACTTTGACTTGGA 59.362 50.000 0.00 0.00 0.00 3.53
296 4233 3.264450 CAGGGTAGGACTTTGACTTGGAT 59.736 47.826 0.00 0.00 0.00 3.41
297 4234 3.916989 AGGGTAGGACTTTGACTTGGATT 59.083 43.478 0.00 0.00 0.00 3.01
298 4235 4.010349 GGGTAGGACTTTGACTTGGATTG 58.990 47.826 0.00 0.00 0.00 2.67
299 4236 4.010349 GGTAGGACTTTGACTTGGATTGG 58.990 47.826 0.00 0.00 0.00 3.16
300 4237 4.263331 GGTAGGACTTTGACTTGGATTGGA 60.263 45.833 0.00 0.00 0.00 3.53
301 4238 4.664688 AGGACTTTGACTTGGATTGGAT 57.335 40.909 0.00 0.00 0.00 3.41
302 4239 5.003096 AGGACTTTGACTTGGATTGGATT 57.997 39.130 0.00 0.00 0.00 3.01
303 4240 6.139679 AGGACTTTGACTTGGATTGGATTA 57.860 37.500 0.00 0.00 0.00 1.75
304 4241 6.183347 AGGACTTTGACTTGGATTGGATTAG 58.817 40.000 0.00 0.00 0.00 1.73
305 4242 5.358160 GGACTTTGACTTGGATTGGATTAGG 59.642 44.000 0.00 0.00 0.00 2.69
306 4243 5.892348 ACTTTGACTTGGATTGGATTAGGT 58.108 37.500 0.00 0.00 0.00 3.08
307 4244 5.946377 ACTTTGACTTGGATTGGATTAGGTC 59.054 40.000 0.00 0.00 0.00 3.85
312 4249 3.144068 TGGATTGGATTAGGTCCTCCA 57.856 47.619 0.00 0.00 44.77 3.86
313 4250 3.048600 TGGATTGGATTAGGTCCTCCAG 58.951 50.000 0.00 0.00 43.10 3.86
314 4251 3.311327 TGGATTGGATTAGGTCCTCCAGA 60.311 47.826 0.00 0.00 43.10 3.86
315 4252 5.187246 TGGATTGGATTAGGTCCTCCAGAG 61.187 50.000 0.00 0.00 43.10 3.35
331 4268 3.791973 CAGAGGTGCTGGAGTTAGTAG 57.208 52.381 0.00 0.00 41.07 2.57
332 4269 2.104170 AGAGGTGCTGGAGTTAGTAGC 58.896 52.381 0.00 0.00 37.93 3.58
333 4270 1.825474 GAGGTGCTGGAGTTAGTAGCA 59.175 52.381 0.00 0.00 44.45 3.49
337 4274 3.319137 TGCTGGAGTTAGTAGCAACAG 57.681 47.619 0.00 4.36 43.77 3.16
338 4275 2.897326 TGCTGGAGTTAGTAGCAACAGA 59.103 45.455 10.64 0.00 43.77 3.41
339 4276 3.254892 GCTGGAGTTAGTAGCAACAGAC 58.745 50.000 10.64 1.66 37.40 3.51
340 4277 3.056465 GCTGGAGTTAGTAGCAACAGACT 60.056 47.826 10.64 0.00 37.40 3.24
341 4278 4.489810 CTGGAGTTAGTAGCAACAGACTG 58.510 47.826 0.00 0.00 0.00 3.51
342 4279 3.895656 TGGAGTTAGTAGCAACAGACTGT 59.104 43.478 1.07 1.07 0.00 3.55
343 4280 5.074804 TGGAGTTAGTAGCAACAGACTGTA 58.925 41.667 8.91 0.00 0.00 2.74
344 4281 5.048224 TGGAGTTAGTAGCAACAGACTGTAC 60.048 44.000 8.91 3.21 0.00 2.90
345 4282 5.183522 GGAGTTAGTAGCAACAGACTGTACT 59.816 44.000 8.91 10.95 0.00 2.73
346 4283 6.015027 AGTTAGTAGCAACAGACTGTACTG 57.985 41.667 15.88 10.14 42.78 2.74
347 4284 5.768662 AGTTAGTAGCAACAGACTGTACTGA 59.231 40.000 15.88 7.56 40.63 3.41
348 4285 6.264744 AGTTAGTAGCAACAGACTGTACTGAA 59.735 38.462 15.88 7.98 40.63 3.02
349 4286 4.872664 AGTAGCAACAGACTGTACTGAAC 58.127 43.478 8.91 6.78 40.63 3.18
350 4287 3.113260 AGCAACAGACTGTACTGAACC 57.887 47.619 8.91 0.00 40.63 3.62
351 4288 2.700897 AGCAACAGACTGTACTGAACCT 59.299 45.455 8.91 0.00 40.63 3.50
352 4289 2.802816 GCAACAGACTGTACTGAACCTG 59.197 50.000 8.91 11.80 40.63 4.00
353 4290 3.741388 GCAACAGACTGTACTGAACCTGT 60.741 47.826 8.91 12.34 40.63 4.00
354 4291 3.735237 ACAGACTGTACTGAACCTGTG 57.265 47.619 6.24 5.53 40.63 3.66
355 4292 3.296854 ACAGACTGTACTGAACCTGTGA 58.703 45.455 6.24 0.00 40.63 3.58
356 4293 3.898123 ACAGACTGTACTGAACCTGTGAT 59.102 43.478 6.24 3.69 40.63 3.06
357 4294 4.345257 ACAGACTGTACTGAACCTGTGATT 59.655 41.667 6.24 3.46 40.63 2.57
358 4295 4.687948 CAGACTGTACTGAACCTGTGATTG 59.312 45.833 6.77 0.00 39.94 2.67
359 4296 4.588951 AGACTGTACTGAACCTGTGATTGA 59.411 41.667 6.77 0.00 0.00 2.57
360 4297 4.887748 ACTGTACTGAACCTGTGATTGAG 58.112 43.478 6.77 0.00 0.00 3.02
361 4298 4.345257 ACTGTACTGAACCTGTGATTGAGT 59.655 41.667 6.77 0.00 0.00 3.41
362 4299 5.538813 ACTGTACTGAACCTGTGATTGAGTA 59.461 40.000 6.77 0.00 0.00 2.59
363 4300 6.211584 ACTGTACTGAACCTGTGATTGAGTAT 59.788 38.462 6.77 0.00 0.00 2.12
364 4301 7.396339 ACTGTACTGAACCTGTGATTGAGTATA 59.604 37.037 6.77 0.00 0.00 1.47
365 4302 8.129496 TGTACTGAACCTGTGATTGAGTATAA 57.871 34.615 0.00 0.00 0.00 0.98
366 4303 8.758829 TGTACTGAACCTGTGATTGAGTATAAT 58.241 33.333 0.00 0.00 0.00 1.28
369 4306 8.758829 ACTGAACCTGTGATTGAGTATAATACA 58.241 33.333 0.00 0.00 0.00 2.29
370 4307 9.770097 CTGAACCTGTGATTGAGTATAATACAT 57.230 33.333 0.00 0.00 0.00 2.29
373 4310 8.383318 ACCTGTGATTGAGTATAATACATTGC 57.617 34.615 0.00 0.00 0.00 3.56
374 4311 7.992608 ACCTGTGATTGAGTATAATACATTGCA 59.007 33.333 0.00 0.00 0.00 4.08
375 4312 8.501580 CCTGTGATTGAGTATAATACATTGCAG 58.498 37.037 0.00 0.00 0.00 4.41
376 4313 8.962884 TGTGATTGAGTATAATACATTGCAGT 57.037 30.769 0.00 0.00 0.00 4.40
377 4314 9.394767 TGTGATTGAGTATAATACATTGCAGTT 57.605 29.630 0.00 0.00 0.00 3.16
381 4318 9.935682 ATTGAGTATAATACATTGCAGTTTTCG 57.064 29.630 0.00 0.00 0.00 3.46
382 4319 7.406553 TGAGTATAATACATTGCAGTTTTCGC 58.593 34.615 0.00 0.00 0.00 4.70
383 4320 7.065204 TGAGTATAATACATTGCAGTTTTCGCA 59.935 33.333 0.00 0.00 37.68 5.10
417 4354 8.735692 AAAAACACCTTTGAACATTGATCAAT 57.264 26.923 15.36 15.36 36.72 2.57
432 4369 7.834881 ATTGATCAATGAATGCCACTCTTAT 57.165 32.000 20.11 0.00 0.00 1.73
433 4370 6.628919 TGATCAATGAATGCCACTCTTATG 57.371 37.500 0.00 0.00 0.00 1.90
434 4371 4.906065 TCAATGAATGCCACTCTTATGC 57.094 40.909 0.00 0.00 0.00 3.14
435 4372 3.633525 TCAATGAATGCCACTCTTATGCC 59.366 43.478 0.00 0.00 0.00 4.40
436 4373 1.667236 TGAATGCCACTCTTATGCCG 58.333 50.000 0.00 0.00 0.00 5.69
437 4374 0.308993 GAATGCCACTCTTATGCCGC 59.691 55.000 0.00 0.00 0.00 6.53
498 4436 0.732571 GCGGAATGGAATCGCTGAAA 59.267 50.000 0.00 0.00 45.16 2.69
499 4437 1.334869 GCGGAATGGAATCGCTGAAAT 59.665 47.619 0.00 0.00 45.16 2.17
720 4665 2.159310 TCTTTTGGCGCGAATTAATGGG 60.159 45.455 12.10 0.00 0.00 4.00
766 4733 4.220724 ACCGCACTATCTACCCTTGATTA 58.779 43.478 0.00 0.00 0.00 1.75
857 5065 8.438513 GTTTCATGACTTCATATCATATCACGG 58.561 37.037 0.00 0.00 34.99 4.94
902 5111 9.367444 CCATTAACCATCTACCGTTATAATCTC 57.633 37.037 0.00 0.00 0.00 2.75
935 5144 3.589988 CCTATAAATACTGCCCTCTGCG 58.410 50.000 0.00 0.00 45.60 5.18
981 5217 2.969262 AGTAGAGCTAATCCTTGGGAGC 59.031 50.000 0.00 0.00 34.05 4.70
982 5218 1.135960 AGAGCTAATCCTTGGGAGCC 58.864 55.000 0.00 0.00 34.05 4.70
991 5227 2.858476 TTGGGAGCCAAGCTGGGA 60.858 61.111 12.85 0.00 39.88 4.37
1010 5246 1.149174 GGGACACGATGCATGGGAT 59.851 57.895 13.62 0.03 0.00 3.85
1016 5252 1.804748 CACGATGCATGGGATGATGAG 59.195 52.381 13.62 0.00 0.00 2.90
1388 12748 1.065701 CATCTGGCTCAATTGCAGCTC 59.934 52.381 21.34 15.02 37.05 4.09
1952 13357 2.572284 GTCCGTCAAGGTCGGGAG 59.428 66.667 4.58 0.00 46.82 4.30
2025 13430 1.672854 CGCTCACATACCTCCCGGAA 61.673 60.000 0.73 0.00 0.00 4.30
2060 13465 1.486310 ACTTGTGAAGGAGCTGACACA 59.514 47.619 0.00 0.00 40.66 3.72
2292 13820 1.883084 GCTTCCGGCGTCGATCATT 60.883 57.895 12.93 0.00 39.00 2.57
2388 13916 3.766691 GCGAGTTCCTACCCCGCA 61.767 66.667 0.00 0.00 42.60 5.69
2490 14033 0.445436 CGAGTGCTCAAGATTGGTGC 59.555 55.000 0.00 0.00 0.00 5.01
2509 14067 3.002348 GTGCCCAGAATAATGTAACTCGC 59.998 47.826 0.00 0.00 0.00 5.03
2538 14097 6.598525 TGTTACTCAAATGAAATACACTGCG 58.401 36.000 0.00 0.00 0.00 5.18
2540 14099 5.283060 ACTCAAATGAAATACACTGCGAC 57.717 39.130 0.00 0.00 0.00 5.19
2541 14100 4.143115 ACTCAAATGAAATACACTGCGACG 60.143 41.667 0.00 0.00 0.00 5.12
2629 14350 9.758651 ACCTACAAAATTCTACAAACATTTTCC 57.241 29.630 0.00 0.00 29.49 3.13
2630 14351 9.981114 CCTACAAAATTCTACAAACATTTTCCT 57.019 29.630 0.00 0.00 29.49 3.36
2654 14375 4.442375 TTTTTCTTTGCGAGTGGACAAA 57.558 36.364 0.00 0.00 34.73 2.83
2655 14376 3.414549 TTTCTTTGCGAGTGGACAAAC 57.585 42.857 0.00 0.00 32.60 2.93
2656 14377 2.031258 TCTTTGCGAGTGGACAAACA 57.969 45.000 0.00 0.00 32.60 2.83
2657 14378 2.571212 TCTTTGCGAGTGGACAAACAT 58.429 42.857 0.00 0.00 32.60 2.71
2658 14379 2.948979 TCTTTGCGAGTGGACAAACATT 59.051 40.909 0.00 0.00 32.60 2.71
2659 14380 3.380004 TCTTTGCGAGTGGACAAACATTT 59.620 39.130 0.00 0.00 32.60 2.32
2660 14381 3.791973 TTGCGAGTGGACAAACATTTT 57.208 38.095 0.00 0.00 0.00 1.82
2661 14382 3.347958 TGCGAGTGGACAAACATTTTC 57.652 42.857 0.00 0.00 0.00 2.29
2707 14455 2.292455 CCCTCCCCCTGAATTCAATTGT 60.292 50.000 9.88 0.00 0.00 2.71
2752 14634 8.630037 CCTATTACCAATCATTAACCTTTGTCC 58.370 37.037 0.00 0.00 0.00 4.02
2753 14635 9.408648 CTATTACCAATCATTAACCTTTGTCCT 57.591 33.333 0.00 0.00 0.00 3.85
2762 14644 9.646522 ATCATTAACCTTTGTCCTTAGCATTAT 57.353 29.630 0.00 0.00 0.00 1.28
2805 14687 0.042188 GGTTACATACATGCGCTGCG 60.042 55.000 19.17 19.17 0.00 5.18
2825 14707 3.850010 GCGCTTCTCTCTTCCAAACAAAC 60.850 47.826 0.00 0.00 0.00 2.93
2826 14708 3.312421 CGCTTCTCTCTTCCAAACAAACA 59.688 43.478 0.00 0.00 0.00 2.83
2871 14753 9.743057 TTACAAACTTAAATTGGTCACATCTTG 57.257 29.630 5.84 0.00 32.02 3.02
2881 14763 4.385825 TGGTCACATCTTGTAAACCAGAC 58.614 43.478 9.00 0.00 39.19 3.51
2886 14768 7.425606 GTCACATCTTGTAAACCAGACAATTT 58.574 34.615 0.00 0.00 36.27 1.82
2889 14771 9.912634 CACATCTTGTAAACCAGACAATTTATT 57.087 29.630 0.00 0.00 36.27 1.40
2919 14802 2.894763 AAAAACCGCCCAAAAGTACC 57.105 45.000 0.00 0.00 0.00 3.34
2920 14803 1.042229 AAAACCGCCCAAAAGTACCC 58.958 50.000 0.00 0.00 0.00 3.69
2921 14804 0.828762 AAACCGCCCAAAAGTACCCC 60.829 55.000 0.00 0.00 0.00 4.95
2922 14805 1.722110 AACCGCCCAAAAGTACCCCT 61.722 55.000 0.00 0.00 0.00 4.79
2923 14806 0.841594 ACCGCCCAAAAGTACCCCTA 60.842 55.000 0.00 0.00 0.00 3.53
2924 14807 0.328926 CCGCCCAAAAGTACCCCTAA 59.671 55.000 0.00 0.00 0.00 2.69
2925 14808 1.272037 CCGCCCAAAAGTACCCCTAAA 60.272 52.381 0.00 0.00 0.00 1.85
2926 14809 2.089201 CGCCCAAAAGTACCCCTAAAG 58.911 52.381 0.00 0.00 0.00 1.85
2927 14810 1.822990 GCCCAAAAGTACCCCTAAAGC 59.177 52.381 0.00 0.00 0.00 3.51
2928 14811 2.089201 CCCAAAAGTACCCCTAAAGCG 58.911 52.381 0.00 0.00 0.00 4.68
2929 14812 2.089201 CCAAAAGTACCCCTAAAGCGG 58.911 52.381 0.00 0.00 0.00 5.52
2930 14813 2.290450 CCAAAAGTACCCCTAAAGCGGA 60.290 50.000 0.00 0.00 0.00 5.54
2931 14814 3.414269 CAAAAGTACCCCTAAAGCGGAA 58.586 45.455 0.00 0.00 0.00 4.30
2935 14818 3.113043 AGTACCCCTAAAGCGGAAAGAT 58.887 45.455 0.00 0.00 0.00 2.40
2936 14819 2.711978 ACCCCTAAAGCGGAAAGATC 57.288 50.000 0.00 0.00 0.00 2.75
2937 14820 1.212195 ACCCCTAAAGCGGAAAGATCC 59.788 52.381 0.00 0.00 42.80 3.36
2938 14821 1.477014 CCCCTAAAGCGGAAAGATCCC 60.477 57.143 0.00 0.00 43.37 3.85
2939 14822 1.211949 CCCTAAAGCGGAAAGATCCCA 59.788 52.381 0.00 0.00 43.37 4.37
2955 14838 2.434843 CCAGCTCTATGGGTCGGCA 61.435 63.158 0.00 0.00 36.64 5.69
2966 14849 3.080300 TGGGTCGGCATGTTTAAGAAT 57.920 42.857 0.00 0.00 0.00 2.40
2967 14850 3.013921 TGGGTCGGCATGTTTAAGAATC 58.986 45.455 0.00 0.00 0.00 2.52
2968 14851 2.357952 GGGTCGGCATGTTTAAGAATCC 59.642 50.000 0.00 0.00 0.00 3.01
2969 14852 2.357952 GGTCGGCATGTTTAAGAATCCC 59.642 50.000 0.00 0.00 0.00 3.85
2970 14853 2.357952 GTCGGCATGTTTAAGAATCCCC 59.642 50.000 0.00 0.00 0.00 4.81
2971 14854 1.681264 CGGCATGTTTAAGAATCCCCC 59.319 52.381 0.00 0.00 0.00 5.40
2972 14855 2.686715 CGGCATGTTTAAGAATCCCCCT 60.687 50.000 0.00 0.00 0.00 4.79
2973 14856 2.959030 GGCATGTTTAAGAATCCCCCTC 59.041 50.000 0.00 0.00 0.00 4.30
2974 14857 2.959030 GCATGTTTAAGAATCCCCCTCC 59.041 50.000 0.00 0.00 0.00 4.30
2975 14858 3.566351 CATGTTTAAGAATCCCCCTCCC 58.434 50.000 0.00 0.00 0.00 4.30
2976 14859 1.927371 TGTTTAAGAATCCCCCTCCCC 59.073 52.381 0.00 0.00 0.00 4.81
2977 14860 2.215093 GTTTAAGAATCCCCCTCCCCT 58.785 52.381 0.00 0.00 0.00 4.79
2978 14861 2.175069 GTTTAAGAATCCCCCTCCCCTC 59.825 54.545 0.00 0.00 0.00 4.30
2979 14862 0.271005 TAAGAATCCCCCTCCCCTCC 59.729 60.000 0.00 0.00 0.00 4.30
2980 14863 2.450699 GAATCCCCCTCCCCTCCC 60.451 72.222 0.00 0.00 0.00 4.30
2981 14864 3.309509 AATCCCCCTCCCCTCCCA 61.310 66.667 0.00 0.00 0.00 4.37
2982 14865 3.677689 AATCCCCCTCCCCTCCCAC 62.678 68.421 0.00 0.00 0.00 4.61
2987 14870 4.675303 CCTCCCCTCCCACCCACA 62.675 72.222 0.00 0.00 0.00 4.17
2988 14871 3.330720 CTCCCCTCCCACCCACAC 61.331 72.222 0.00 0.00 0.00 3.82
2989 14872 3.869934 TCCCCTCCCACCCACACT 61.870 66.667 0.00 0.00 0.00 3.55
2990 14873 3.650950 CCCCTCCCACCCACACTG 61.651 72.222 0.00 0.00 0.00 3.66
2991 14874 2.854032 CCCTCCCACCCACACTGT 60.854 66.667 0.00 0.00 0.00 3.55
2992 14875 2.431683 CCTCCCACCCACACTGTG 59.568 66.667 6.19 6.19 0.00 3.66
2993 14876 2.452064 CCTCCCACCCACACTGTGT 61.452 63.158 7.80 7.80 31.71 3.72
2996 14879 1.525995 CCCACCCACACTGTGTGTC 60.526 63.158 32.07 0.00 43.92 3.67
2997 14880 1.887242 CCACCCACACTGTGTGTCG 60.887 63.158 32.07 24.87 43.92 4.35
3010 14956 3.561503 TGTGTGTCGTCTACAAGAATCG 58.438 45.455 0.00 0.00 40.63 3.34
3020 14966 8.102716 GTCGTCTACAAGAATCGAATTAAACAG 58.897 37.037 0.00 0.00 27.07 3.16
3030 14976 2.519963 GAATTAAACAGCGCAGAAGGC 58.480 47.619 11.47 0.00 39.90 4.35
3041 14987 1.017387 GCAGAAGGCGACAAATAGGG 58.983 55.000 0.00 0.00 0.00 3.53
3045 14991 3.081804 AGAAGGCGACAAATAGGGTTTG 58.918 45.455 0.00 0.00 35.64 2.93
3098 15057 6.093404 GCTTCAACTACCTTAGGAAAATTGC 58.907 40.000 4.77 0.00 0.00 3.56
3099 15058 6.584185 TTCAACTACCTTAGGAAAATTGCC 57.416 37.500 4.77 0.00 0.00 4.52
3111 15072 6.664428 AGGAAAATTGCCTAAAAACTAGCA 57.336 33.333 0.00 0.00 32.92 3.49
3123 15084 7.361457 GCCTAAAAACTAGCATAGGAAAAACGA 60.361 37.037 12.47 0.00 44.97 3.85
3211 15176 7.655236 TGTGAATTTAAGTGCATGAATTTGG 57.345 32.000 0.00 0.00 0.00 3.28
3276 15243 8.506140 TTTGATTTCATTAACGAGAGCAAAAG 57.494 30.769 3.41 0.00 33.91 2.27
3379 15346 5.253330 AGAAAAGGAATAAACCTCATGCGA 58.747 37.500 0.00 0.00 39.62 5.10
3393 15360 7.624360 ACCTCATGCGAAACATTCTAAAATA 57.376 32.000 0.00 0.00 36.64 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 3976 0.695462 ATAGTCCCTCCATGCAGGCA 60.695 55.000 0.00 0.00 37.29 4.75
40 3977 0.036022 GATAGTCCCTCCATGCAGGC 59.964 60.000 0.00 0.00 37.29 4.85
54 3991 5.440234 AACGCTGAATAGACGATGATAGT 57.560 39.130 0.00 0.00 0.00 2.12
114 4051 1.033746 CAGTGATCATGGCCACCACC 61.034 60.000 8.16 0.00 35.80 4.61
115 4052 1.033746 CCAGTGATCATGGCCACCAC 61.034 60.000 8.16 14.24 35.80 4.16
116 4053 1.303948 CCAGTGATCATGGCCACCA 59.696 57.895 8.16 0.32 38.19 4.17
117 4054 1.033746 CACCAGTGATCATGGCCACC 61.034 60.000 8.16 0.00 41.87 4.61
118 4055 1.033746 CCACCAGTGATCATGGCCAC 61.034 60.000 8.16 0.00 41.87 5.01
119 4056 1.303948 CCACCAGTGATCATGGCCA 59.696 57.895 8.56 8.56 41.87 5.36
120 4057 1.454479 CCCACCAGTGATCATGGCC 60.454 63.158 18.55 0.00 41.87 5.36
121 4058 1.454479 CCCCACCAGTGATCATGGC 60.454 63.158 18.55 0.00 41.87 4.40
122 4059 0.848735 ATCCCCACCAGTGATCATGG 59.151 55.000 17.56 17.56 43.87 3.66
123 4060 3.328637 TCATATCCCCACCAGTGATCATG 59.671 47.826 0.00 0.00 0.00 3.07
124 4061 3.601520 TCATATCCCCACCAGTGATCAT 58.398 45.455 0.00 0.00 0.00 2.45
125 4062 3.059051 TCATATCCCCACCAGTGATCA 57.941 47.619 0.00 0.00 0.00 2.92
126 4063 3.496870 GGTTCATATCCCCACCAGTGATC 60.497 52.174 0.00 0.00 0.00 2.92
127 4064 2.443255 GGTTCATATCCCCACCAGTGAT 59.557 50.000 0.00 0.00 0.00 3.06
128 4065 1.843851 GGTTCATATCCCCACCAGTGA 59.156 52.381 0.00 0.00 0.00 3.41
129 4066 1.475034 CGGTTCATATCCCCACCAGTG 60.475 57.143 0.00 0.00 0.00 3.66
130 4067 0.837272 CGGTTCATATCCCCACCAGT 59.163 55.000 0.00 0.00 0.00 4.00
131 4068 0.837272 ACGGTTCATATCCCCACCAG 59.163 55.000 0.00 0.00 0.00 4.00
132 4069 1.210967 GAACGGTTCATATCCCCACCA 59.789 52.381 15.70 0.00 0.00 4.17
133 4070 1.210967 TGAACGGTTCATATCCCCACC 59.789 52.381 19.07 0.00 34.08 4.61
134 4071 2.561569 CTGAACGGTTCATATCCCCAC 58.438 52.381 22.65 0.00 39.30 4.61
135 4072 1.134220 GCTGAACGGTTCATATCCCCA 60.134 52.381 22.65 0.00 39.30 4.96
136 4073 1.594331 GCTGAACGGTTCATATCCCC 58.406 55.000 22.65 5.34 39.30 4.81
137 4074 1.217882 CGCTGAACGGTTCATATCCC 58.782 55.000 22.65 9.07 39.30 3.85
154 4091 7.464830 TCTCATTAACTAAAGAAGCATACGC 57.535 36.000 0.00 0.00 38.99 4.42
174 4111 9.058174 CGAAGAGTAAGAAGGTATCTAATCTCA 57.942 37.037 0.00 0.00 37.42 3.27
175 4112 8.508875 CCGAAGAGTAAGAAGGTATCTAATCTC 58.491 40.741 0.00 0.00 37.42 2.75
176 4113 7.040271 GCCGAAGAGTAAGAAGGTATCTAATCT 60.040 40.741 0.00 0.00 37.42 2.40
177 4114 7.085746 GCCGAAGAGTAAGAAGGTATCTAATC 58.914 42.308 0.00 0.00 37.42 1.75
178 4115 6.550108 TGCCGAAGAGTAAGAAGGTATCTAAT 59.450 38.462 0.00 0.00 37.42 1.73
179 4116 5.889853 TGCCGAAGAGTAAGAAGGTATCTAA 59.110 40.000 0.00 0.00 37.42 2.10
180 4117 5.443283 TGCCGAAGAGTAAGAAGGTATCTA 58.557 41.667 0.00 0.00 37.42 1.98
181 4118 4.279145 TGCCGAAGAGTAAGAAGGTATCT 58.721 43.478 0.00 0.00 41.32 1.98
182 4119 4.650754 TGCCGAAGAGTAAGAAGGTATC 57.349 45.455 0.00 0.00 0.00 2.24
183 4120 5.364157 AGATTGCCGAAGAGTAAGAAGGTAT 59.636 40.000 0.00 0.00 0.00 2.73
184 4121 4.710375 AGATTGCCGAAGAGTAAGAAGGTA 59.290 41.667 0.00 0.00 0.00 3.08
185 4122 3.515901 AGATTGCCGAAGAGTAAGAAGGT 59.484 43.478 0.00 0.00 0.00 3.50
186 4123 4.130286 AGATTGCCGAAGAGTAAGAAGG 57.870 45.455 0.00 0.00 0.00 3.46
187 4124 9.482627 AATATAAGATTGCCGAAGAGTAAGAAG 57.517 33.333 0.00 0.00 0.00 2.85
189 4126 9.909644 GTAATATAAGATTGCCGAAGAGTAAGA 57.090 33.333 0.00 0.00 0.00 2.10
190 4127 9.915629 AGTAATATAAGATTGCCGAAGAGTAAG 57.084 33.333 0.00 0.00 0.00 2.34
191 4128 9.909644 GAGTAATATAAGATTGCCGAAGAGTAA 57.090 33.333 0.00 0.00 0.00 2.24
192 4129 9.074576 TGAGTAATATAAGATTGCCGAAGAGTA 57.925 33.333 0.00 0.00 0.00 2.59
193 4130 7.952671 TGAGTAATATAAGATTGCCGAAGAGT 58.047 34.615 0.00 0.00 0.00 3.24
194 4131 8.867935 CATGAGTAATATAAGATTGCCGAAGAG 58.132 37.037 0.00 0.00 0.00 2.85
195 4132 8.367911 ACATGAGTAATATAAGATTGCCGAAGA 58.632 33.333 0.00 0.00 0.00 2.87
196 4133 8.539770 ACATGAGTAATATAAGATTGCCGAAG 57.460 34.615 0.00 0.00 0.00 3.79
197 4134 8.902540 AACATGAGTAATATAAGATTGCCGAA 57.097 30.769 0.00 0.00 0.00 4.30
198 4135 8.902540 AAACATGAGTAATATAAGATTGCCGA 57.097 30.769 0.00 0.00 0.00 5.54
199 4136 7.952101 CGAAACATGAGTAATATAAGATTGCCG 59.048 37.037 0.00 0.00 0.00 5.69
200 4137 7.746475 GCGAAACATGAGTAATATAAGATTGCC 59.254 37.037 0.00 0.00 0.00 4.52
201 4138 7.475565 CGCGAAACATGAGTAATATAAGATTGC 59.524 37.037 0.00 0.00 0.00 3.56
202 4139 7.952101 CCGCGAAACATGAGTAATATAAGATTG 59.048 37.037 8.23 0.00 0.00 2.67
203 4140 7.656137 ACCGCGAAACATGAGTAATATAAGATT 59.344 33.333 8.23 0.00 0.00 2.40
204 4141 7.152645 ACCGCGAAACATGAGTAATATAAGAT 58.847 34.615 8.23 0.00 0.00 2.40
205 4142 6.509656 ACCGCGAAACATGAGTAATATAAGA 58.490 36.000 8.23 0.00 0.00 2.10
206 4143 6.398621 CGACCGCGAAACATGAGTAATATAAG 60.399 42.308 8.23 0.00 40.82 1.73
207 4144 5.400188 CGACCGCGAAACATGAGTAATATAA 59.600 40.000 8.23 0.00 40.82 0.98
208 4145 4.913345 CGACCGCGAAACATGAGTAATATA 59.087 41.667 8.23 0.00 40.82 0.86
209 4146 3.734231 CGACCGCGAAACATGAGTAATAT 59.266 43.478 8.23 0.00 40.82 1.28
210 4147 3.110358 CGACCGCGAAACATGAGTAATA 58.890 45.455 8.23 0.00 40.82 0.98
211 4148 1.924524 CGACCGCGAAACATGAGTAAT 59.075 47.619 8.23 0.00 40.82 1.89
212 4149 1.342555 CGACCGCGAAACATGAGTAA 58.657 50.000 8.23 0.00 40.82 2.24
213 4150 1.074319 GCGACCGCGAAACATGAGTA 61.074 55.000 8.23 0.00 40.82 2.59
214 4151 2.380410 GCGACCGCGAAACATGAGT 61.380 57.895 8.23 0.00 40.82 3.41
215 4152 1.896339 TTGCGACCGCGAAACATGAG 61.896 55.000 8.23 0.00 45.51 2.90
216 4153 1.499688 TTTGCGACCGCGAAACATGA 61.500 50.000 8.23 0.00 45.51 3.07
217 4154 0.658829 TTTTGCGACCGCGAAACATG 60.659 50.000 21.61 0.00 46.09 3.21
218 4155 1.649815 TTTTGCGACCGCGAAACAT 59.350 47.368 21.61 0.00 46.09 2.71
219 4156 3.099438 TTTTGCGACCGCGAAACA 58.901 50.000 21.61 5.38 46.09 2.83
222 4159 0.444651 CCTTATTTTGCGACCGCGAA 59.555 50.000 8.23 12.50 45.51 4.70
223 4160 1.973137 GCCTTATTTTGCGACCGCGA 61.973 55.000 8.23 4.98 45.51 5.87
224 4161 1.582680 GCCTTATTTTGCGACCGCG 60.583 57.895 9.91 0.00 45.51 6.46
225 4162 1.226575 GGCCTTATTTTGCGACCGC 60.227 57.895 7.53 7.53 42.35 5.68
226 4163 0.098728 CTGGCCTTATTTTGCGACCG 59.901 55.000 3.32 0.00 0.00 4.79
227 4164 0.179137 GCTGGCCTTATTTTGCGACC 60.179 55.000 3.32 0.00 0.00 4.79
228 4165 0.523335 CGCTGGCCTTATTTTGCGAC 60.523 55.000 3.32 0.00 45.15 5.19
229 4166 1.800032 CGCTGGCCTTATTTTGCGA 59.200 52.632 3.32 0.00 45.15 5.10
230 4167 0.523335 GTCGCTGGCCTTATTTTGCG 60.523 55.000 3.32 8.80 43.95 4.85
231 4168 0.525761 TGTCGCTGGCCTTATTTTGC 59.474 50.000 3.32 0.00 0.00 3.68
232 4169 1.812571 ACTGTCGCTGGCCTTATTTTG 59.187 47.619 3.32 0.00 0.00 2.44
233 4170 2.084546 GACTGTCGCTGGCCTTATTTT 58.915 47.619 3.32 0.00 0.00 1.82
234 4171 1.279271 AGACTGTCGCTGGCCTTATTT 59.721 47.619 3.32 0.00 0.00 1.40
235 4172 0.905357 AGACTGTCGCTGGCCTTATT 59.095 50.000 3.32 0.00 0.00 1.40
236 4173 1.683917 CTAGACTGTCGCTGGCCTTAT 59.316 52.381 3.32 0.00 0.00 1.73
237 4174 1.103803 CTAGACTGTCGCTGGCCTTA 58.896 55.000 3.32 0.00 0.00 2.69
238 4175 1.893786 CTAGACTGTCGCTGGCCTT 59.106 57.895 3.32 0.00 0.00 4.35
239 4176 2.716017 GCTAGACTGTCGCTGGCCT 61.716 63.158 3.32 0.00 34.24 5.19
240 4177 1.384989 TAGCTAGACTGTCGCTGGCC 61.385 60.000 17.05 0.00 40.29 5.36
241 4178 0.248702 GTAGCTAGACTGTCGCTGGC 60.249 60.000 17.05 12.58 39.79 4.85
242 4179 1.384525 AGTAGCTAGACTGTCGCTGG 58.615 55.000 17.05 4.76 35.33 4.85
243 4180 3.495670 AAAGTAGCTAGACTGTCGCTG 57.504 47.619 17.05 6.85 35.33 5.18
244 4181 3.367498 CCAAAAGTAGCTAGACTGTCGCT 60.367 47.826 13.42 13.42 37.77 4.93
245 4182 2.924290 CCAAAAGTAGCTAGACTGTCGC 59.076 50.000 1.52 0.75 0.00 5.19
246 4183 4.175787 ACCAAAAGTAGCTAGACTGTCG 57.824 45.455 1.52 0.00 0.00 4.35
247 4184 6.512342 TCTACCAAAAGTAGCTAGACTGTC 57.488 41.667 0.00 0.00 46.98 3.51
248 4185 5.105675 GCTCTACCAAAAGTAGCTAGACTGT 60.106 44.000 0.00 0.00 46.98 3.55
249 4186 5.126384 AGCTCTACCAAAAGTAGCTAGACTG 59.874 44.000 0.00 0.00 46.98 3.51
250 4187 5.265989 AGCTCTACCAAAAGTAGCTAGACT 58.734 41.667 0.00 0.00 46.98 3.24
251 4188 5.125739 TGAGCTCTACCAAAAGTAGCTAGAC 59.874 44.000 16.19 0.00 46.98 2.59
252 4189 5.262009 TGAGCTCTACCAAAAGTAGCTAGA 58.738 41.667 16.19 0.00 46.98 2.43
253 4190 5.451242 CCTGAGCTCTACCAAAAGTAGCTAG 60.451 48.000 16.19 0.00 46.98 3.42
254 4191 4.402793 CCTGAGCTCTACCAAAAGTAGCTA 59.597 45.833 16.19 0.00 46.98 3.32
255 4192 3.196685 CCTGAGCTCTACCAAAAGTAGCT 59.803 47.826 16.19 0.00 46.98 3.32
256 4193 3.526534 CCTGAGCTCTACCAAAAGTAGC 58.473 50.000 16.19 0.00 46.98 3.58
258 4195 3.517612 ACCCTGAGCTCTACCAAAAGTA 58.482 45.455 16.19 0.00 0.00 2.24
259 4196 2.339769 ACCCTGAGCTCTACCAAAAGT 58.660 47.619 16.19 0.00 0.00 2.66
260 4197 3.118592 CCTACCCTGAGCTCTACCAAAAG 60.119 52.174 16.19 1.39 0.00 2.27
261 4198 2.838202 CCTACCCTGAGCTCTACCAAAA 59.162 50.000 16.19 0.00 0.00 2.44
262 4199 2.043939 TCCTACCCTGAGCTCTACCAAA 59.956 50.000 16.19 0.00 0.00 3.28
263 4200 1.644337 TCCTACCCTGAGCTCTACCAA 59.356 52.381 16.19 0.00 0.00 3.67
264 4201 1.063867 GTCCTACCCTGAGCTCTACCA 60.064 57.143 16.19 0.00 0.00 3.25
265 4202 1.215924 AGTCCTACCCTGAGCTCTACC 59.784 57.143 16.19 0.00 0.00 3.18
266 4203 2.740506 AGTCCTACCCTGAGCTCTAC 57.259 55.000 16.19 0.80 0.00 2.59
267 4204 3.011369 TCAAAGTCCTACCCTGAGCTCTA 59.989 47.826 16.19 0.24 0.00 2.43
268 4205 2.183679 CAAAGTCCTACCCTGAGCTCT 58.816 52.381 16.19 0.00 0.00 4.09
269 4206 2.093921 GTCAAAGTCCTACCCTGAGCTC 60.094 54.545 6.82 6.82 0.00 4.09
270 4207 1.903183 GTCAAAGTCCTACCCTGAGCT 59.097 52.381 0.00 0.00 0.00 4.09
271 4208 1.903183 AGTCAAAGTCCTACCCTGAGC 59.097 52.381 0.00 0.00 0.00 4.26
272 4209 3.307059 CCAAGTCAAAGTCCTACCCTGAG 60.307 52.174 0.00 0.00 0.00 3.35
273 4210 2.637872 CCAAGTCAAAGTCCTACCCTGA 59.362 50.000 0.00 0.00 0.00 3.86
274 4211 2.637872 TCCAAGTCAAAGTCCTACCCTG 59.362 50.000 0.00 0.00 0.00 4.45
275 4212 2.986050 TCCAAGTCAAAGTCCTACCCT 58.014 47.619 0.00 0.00 0.00 4.34
276 4213 4.010349 CAATCCAAGTCAAAGTCCTACCC 58.990 47.826 0.00 0.00 0.00 3.69
277 4214 4.010349 CCAATCCAAGTCAAAGTCCTACC 58.990 47.826 0.00 0.00 0.00 3.18
278 4215 4.906618 TCCAATCCAAGTCAAAGTCCTAC 58.093 43.478 0.00 0.00 0.00 3.18
279 4216 5.779241 ATCCAATCCAAGTCAAAGTCCTA 57.221 39.130 0.00 0.00 0.00 2.94
280 4217 4.664688 ATCCAATCCAAGTCAAAGTCCT 57.335 40.909 0.00 0.00 0.00 3.85
281 4218 5.358160 CCTAATCCAATCCAAGTCAAAGTCC 59.642 44.000 0.00 0.00 0.00 3.85
282 4219 5.946377 ACCTAATCCAATCCAAGTCAAAGTC 59.054 40.000 0.00 0.00 0.00 3.01
283 4220 5.892348 ACCTAATCCAATCCAAGTCAAAGT 58.108 37.500 0.00 0.00 0.00 2.66
284 4221 6.442513 GACCTAATCCAATCCAAGTCAAAG 57.557 41.667 0.00 0.00 0.00 2.77
311 4248 2.159170 GCTACTAACTCCAGCACCTCTG 60.159 54.545 0.00 0.00 42.49 3.35
312 4249 2.104170 GCTACTAACTCCAGCACCTCT 58.896 52.381 0.00 0.00 35.35 3.69
313 4250 1.825474 TGCTACTAACTCCAGCACCTC 59.175 52.381 0.00 0.00 40.26 3.85
314 4251 1.938585 TGCTACTAACTCCAGCACCT 58.061 50.000 0.00 0.00 40.26 4.00
315 4252 2.289444 TGTTGCTACTAACTCCAGCACC 60.289 50.000 0.00 0.00 44.56 5.01
316 4253 2.996621 CTGTTGCTACTAACTCCAGCAC 59.003 50.000 0.00 0.00 44.56 4.40
317 4254 2.897326 TCTGTTGCTACTAACTCCAGCA 59.103 45.455 0.00 0.00 43.28 4.41
318 4255 3.056465 AGTCTGTTGCTACTAACTCCAGC 60.056 47.826 0.00 0.00 35.82 4.85
319 4256 4.021894 ACAGTCTGTTGCTACTAACTCCAG 60.022 45.833 0.00 0.00 0.00 3.86
320 4257 3.895656 ACAGTCTGTTGCTACTAACTCCA 59.104 43.478 0.00 0.00 0.00 3.86
321 4258 4.522722 ACAGTCTGTTGCTACTAACTCC 57.477 45.455 0.00 0.00 0.00 3.85
322 4259 6.072618 TCAGTACAGTCTGTTGCTACTAACTC 60.073 42.308 11.54 0.00 36.85 3.01
323 4260 5.768662 TCAGTACAGTCTGTTGCTACTAACT 59.231 40.000 11.54 2.87 36.85 2.24
324 4261 6.010294 TCAGTACAGTCTGTTGCTACTAAC 57.990 41.667 11.54 0.34 36.85 2.34
325 4262 6.444633 GTTCAGTACAGTCTGTTGCTACTAA 58.555 40.000 11.54 0.00 36.85 2.24
326 4263 5.048224 GGTTCAGTACAGTCTGTTGCTACTA 60.048 44.000 11.54 0.00 36.85 1.82
327 4264 4.262079 GGTTCAGTACAGTCTGTTGCTACT 60.262 45.833 11.54 5.55 36.85 2.57
328 4265 3.988517 GGTTCAGTACAGTCTGTTGCTAC 59.011 47.826 11.54 3.04 36.85 3.58
329 4266 3.895656 AGGTTCAGTACAGTCTGTTGCTA 59.104 43.478 11.54 0.00 36.85 3.49
330 4267 2.700897 AGGTTCAGTACAGTCTGTTGCT 59.299 45.455 11.54 7.33 36.85 3.91
331 4268 2.802816 CAGGTTCAGTACAGTCTGTTGC 59.197 50.000 11.54 5.03 36.85 4.17
332 4269 3.804325 CACAGGTTCAGTACAGTCTGTTG 59.196 47.826 11.54 4.50 36.85 3.33
333 4270 3.704566 TCACAGGTTCAGTACAGTCTGTT 59.295 43.478 11.54 0.00 36.85 3.16
334 4271 3.296854 TCACAGGTTCAGTACAGTCTGT 58.703 45.455 10.99 10.99 36.85 3.41
335 4272 4.527509 ATCACAGGTTCAGTACAGTCTG 57.472 45.455 0.00 0.00 36.85 3.51
336 4273 4.588951 TCAATCACAGGTTCAGTACAGTCT 59.411 41.667 0.00 0.00 0.00 3.24
337 4274 4.883083 TCAATCACAGGTTCAGTACAGTC 58.117 43.478 0.00 0.00 0.00 3.51
338 4275 4.345257 ACTCAATCACAGGTTCAGTACAGT 59.655 41.667 0.00 0.00 0.00 3.55
339 4276 4.887748 ACTCAATCACAGGTTCAGTACAG 58.112 43.478 0.00 0.00 0.00 2.74
340 4277 4.955811 ACTCAATCACAGGTTCAGTACA 57.044 40.909 0.00 0.00 0.00 2.90
343 4280 8.758829 TGTATTATACTCAATCACAGGTTCAGT 58.241 33.333 3.92 0.00 0.00 3.41
344 4281 9.770097 ATGTATTATACTCAATCACAGGTTCAG 57.230 33.333 3.92 0.00 0.00 3.02
347 4284 8.840321 GCAATGTATTATACTCAATCACAGGTT 58.160 33.333 3.92 0.00 0.00 3.50
348 4285 7.992608 TGCAATGTATTATACTCAATCACAGGT 59.007 33.333 3.92 0.00 0.00 4.00
349 4286 8.382030 TGCAATGTATTATACTCAATCACAGG 57.618 34.615 3.92 0.00 0.00 4.00
350 4287 9.049523 ACTGCAATGTATTATACTCAATCACAG 57.950 33.333 3.92 5.27 0.00 3.66
351 4288 8.962884 ACTGCAATGTATTATACTCAATCACA 57.037 30.769 3.92 0.00 0.00 3.58
355 4292 9.935682 CGAAAACTGCAATGTATTATACTCAAT 57.064 29.630 3.92 0.00 0.00 2.57
356 4293 7.908082 GCGAAAACTGCAATGTATTATACTCAA 59.092 33.333 3.92 0.00 0.00 3.02
357 4294 7.065204 TGCGAAAACTGCAATGTATTATACTCA 59.935 33.333 3.92 0.00 39.87 3.41
358 4295 7.406553 TGCGAAAACTGCAATGTATTATACTC 58.593 34.615 3.92 0.00 39.87 2.59
359 4296 7.315247 TGCGAAAACTGCAATGTATTATACT 57.685 32.000 3.92 0.00 39.87 2.12
360 4297 7.962934 TTGCGAAAACTGCAATGTATTATAC 57.037 32.000 0.00 0.00 46.62 1.47
392 4329 8.614346 CATTGATCAATGTTCAAAGGTGTTTTT 58.386 29.630 31.74 0.46 42.32 1.94
393 4330 7.986320 TCATTGATCAATGTTCAAAGGTGTTTT 59.014 29.630 35.74 4.62 46.15 2.43
394 4331 7.499292 TCATTGATCAATGTTCAAAGGTGTTT 58.501 30.769 35.74 4.98 46.15 2.83
395 4332 7.053316 TCATTGATCAATGTTCAAAGGTGTT 57.947 32.000 35.74 5.59 46.15 3.32
396 4333 6.653526 TCATTGATCAATGTTCAAAGGTGT 57.346 33.333 35.74 6.00 46.15 4.16
397 4334 7.412563 GCATTCATTGATCAATGTTCAAAGGTG 60.413 37.037 35.74 22.97 46.15 4.00
398 4335 6.592607 GCATTCATTGATCAATGTTCAAAGGT 59.407 34.615 35.74 14.82 46.15 3.50
399 4336 6.036735 GGCATTCATTGATCAATGTTCAAAGG 59.963 38.462 35.74 27.25 46.15 3.11
400 4337 6.592220 TGGCATTCATTGATCAATGTTCAAAG 59.408 34.615 35.74 24.53 46.15 2.77
401 4338 6.369340 GTGGCATTCATTGATCAATGTTCAAA 59.631 34.615 35.74 26.59 46.15 2.69
402 4339 5.870433 GTGGCATTCATTGATCAATGTTCAA 59.130 36.000 35.74 26.87 46.15 2.69
403 4340 5.186215 AGTGGCATTCATTGATCAATGTTCA 59.814 36.000 35.74 25.85 46.15 3.18
404 4341 5.657474 AGTGGCATTCATTGATCAATGTTC 58.343 37.500 35.74 24.97 46.15 3.18
405 4342 5.421056 AGAGTGGCATTCATTGATCAATGTT 59.579 36.000 35.74 25.64 46.15 2.71
406 4343 4.954202 AGAGTGGCATTCATTGATCAATGT 59.046 37.500 35.74 22.14 46.15 2.71
408 4345 7.658261 CATAAGAGTGGCATTCATTGATCAAT 58.342 34.615 15.36 15.36 0.00 2.57
409 4346 6.460537 GCATAAGAGTGGCATTCATTGATCAA 60.461 38.462 11.26 11.26 0.00 2.57
410 4347 5.009310 GCATAAGAGTGGCATTCATTGATCA 59.991 40.000 12.78 0.00 0.00 2.92
411 4348 5.458891 GCATAAGAGTGGCATTCATTGATC 58.541 41.667 12.78 0.00 0.00 2.92
412 4349 4.280174 GGCATAAGAGTGGCATTCATTGAT 59.720 41.667 12.78 0.00 43.52 2.57
413 4350 3.633525 GGCATAAGAGTGGCATTCATTGA 59.366 43.478 12.78 0.00 43.52 2.57
414 4351 3.549423 CGGCATAAGAGTGGCATTCATTG 60.549 47.826 12.78 7.47 44.19 2.82
415 4352 2.620115 CGGCATAAGAGTGGCATTCATT 59.380 45.455 12.78 6.39 44.19 2.57
416 4353 2.224606 CGGCATAAGAGTGGCATTCAT 58.775 47.619 12.78 2.70 44.19 2.57
417 4354 1.667236 CGGCATAAGAGTGGCATTCA 58.333 50.000 12.78 0.00 44.19 2.57
418 4355 0.308993 GCGGCATAAGAGTGGCATTC 59.691 55.000 1.12 1.12 44.19 2.67
419 4356 0.107017 AGCGGCATAAGAGTGGCATT 60.107 50.000 1.45 0.00 44.19 3.56
420 4357 0.758734 TAGCGGCATAAGAGTGGCAT 59.241 50.000 1.45 0.00 44.19 4.40
421 4358 0.539518 TTAGCGGCATAAGAGTGGCA 59.460 50.000 1.45 0.00 44.19 4.92
422 4359 1.663695 TTTAGCGGCATAAGAGTGGC 58.336 50.000 1.45 0.00 40.91 5.01
498 4436 1.451936 GGCCTTCATGTCGGGCTAT 59.548 57.895 19.46 0.00 44.70 2.97
499 4437 2.908015 GGCCTTCATGTCGGGCTA 59.092 61.111 19.46 0.00 44.70 3.93
515 4453 3.293311 TCCTTTTGTTCTACGTCTCGG 57.707 47.619 0.00 0.00 0.00 4.63
678 4623 5.035443 AGATCACGACGAGTAATTAGCAAC 58.965 41.667 0.00 0.00 0.00 4.17
820 5016 2.545526 AGTCATGAAACTGTTGAGTGCG 59.454 45.455 0.00 0.00 30.61 5.34
857 5065 1.653151 GGGAGACGAATGTGGTAAGC 58.347 55.000 0.00 0.00 0.00 3.09
902 5111 5.845953 CAGTATTTATAGGCGAATTTGCGTG 59.154 40.000 20.62 0.00 34.38 5.34
935 5144 1.154073 GCTTTGCTGCTGCTGCTAC 60.154 57.895 27.67 13.40 40.48 3.58
981 5217 2.352805 GTGTCCCTCCCAGCTTGG 59.647 66.667 0.00 0.00 37.25 3.61
982 5218 1.903877 ATCGTGTCCCTCCCAGCTTG 61.904 60.000 0.00 0.00 0.00 4.01
988 5224 1.524621 CATGCATCGTGTCCCTCCC 60.525 63.158 0.00 0.00 0.00 4.30
989 5225 1.524621 CCATGCATCGTGTCCCTCC 60.525 63.158 0.00 0.00 0.00 4.30
990 5226 1.524621 CCCATGCATCGTGTCCCTC 60.525 63.158 0.00 0.00 0.00 4.30
991 5227 1.348008 ATCCCATGCATCGTGTCCCT 61.348 55.000 0.00 0.00 0.00 4.20
1010 5246 1.829970 AGAGCGCGGGATCTCATCA 60.830 57.895 15.13 0.00 32.26 3.07
1016 5252 4.959596 GCAGGAGAGCGCGGGATC 62.960 72.222 10.05 10.05 0.00 3.36
2025 13430 1.202770 ACAAGTGGGTCTAAAAGCGCT 60.203 47.619 2.64 2.64 0.00 5.92
2275 13800 1.490693 CCAATGATCGACGCCGGAAG 61.491 60.000 5.05 0.00 36.24 3.46
2490 14033 3.713288 TCGCGAGTTACATTATTCTGGG 58.287 45.455 3.71 0.00 0.00 4.45
2509 14067 8.495949 AGTGTATTTCATTTGAGTAACAGTTCG 58.504 33.333 0.00 0.00 0.00 3.95
2538 14097 4.012319 TCTATCACGTTAAGAGTGCGTC 57.988 45.455 6.22 0.00 39.31 5.19
2540 14099 4.598062 TCATCTATCACGTTAAGAGTGCG 58.402 43.478 6.22 0.00 39.31 5.34
2541 14100 7.139392 TGTATCATCTATCACGTTAAGAGTGC 58.861 38.462 6.22 0.00 39.31 4.40
2633 14354 4.170256 GTTTGTCCACTCGCAAAGAAAAA 58.830 39.130 0.00 0.00 35.58 1.94
2634 14355 3.191581 TGTTTGTCCACTCGCAAAGAAAA 59.808 39.130 0.00 0.00 35.58 2.29
2635 14356 2.750166 TGTTTGTCCACTCGCAAAGAAA 59.250 40.909 0.00 0.00 35.58 2.52
2636 14357 2.360844 TGTTTGTCCACTCGCAAAGAA 58.639 42.857 0.00 0.00 35.58 2.52
2637 14358 2.031258 TGTTTGTCCACTCGCAAAGA 57.969 45.000 0.00 0.00 35.58 2.52
2638 14359 3.354089 AATGTTTGTCCACTCGCAAAG 57.646 42.857 0.00 0.00 35.58 2.77
2639 14360 3.791973 AAATGTTTGTCCACTCGCAAA 57.208 38.095 0.00 0.00 32.89 3.68
2640 14361 3.490078 GGAAAATGTTTGTCCACTCGCAA 60.490 43.478 0.00 0.00 0.00 4.85
2641 14362 2.034053 GGAAAATGTTTGTCCACTCGCA 59.966 45.455 0.00 0.00 0.00 5.10
2642 14363 2.293399 AGGAAAATGTTTGTCCACTCGC 59.707 45.455 0.00 0.00 33.57 5.03
2643 14364 4.568152 AAGGAAAATGTTTGTCCACTCG 57.432 40.909 0.00 0.00 33.57 4.18
2644 14365 7.039313 AGTTAAGGAAAATGTTTGTCCACTC 57.961 36.000 0.00 0.00 33.57 3.51
2645 14366 7.417456 GGAAGTTAAGGAAAATGTTTGTCCACT 60.417 37.037 0.00 0.00 33.57 4.00
2646 14367 6.700081 GGAAGTTAAGGAAAATGTTTGTCCAC 59.300 38.462 0.00 0.00 33.57 4.02
2647 14368 6.183360 GGGAAGTTAAGGAAAATGTTTGTCCA 60.183 38.462 0.00 0.00 33.57 4.02
2648 14369 6.183360 TGGGAAGTTAAGGAAAATGTTTGTCC 60.183 38.462 0.00 0.00 0.00 4.02
2649 14370 6.811954 TGGGAAGTTAAGGAAAATGTTTGTC 58.188 36.000 0.00 0.00 0.00 3.18
2650 14371 6.800072 TGGGAAGTTAAGGAAAATGTTTGT 57.200 33.333 0.00 0.00 0.00 2.83
2651 14372 7.768582 AGTTTGGGAAGTTAAGGAAAATGTTTG 59.231 33.333 0.00 0.00 0.00 2.93
2652 14373 7.857456 AGTTTGGGAAGTTAAGGAAAATGTTT 58.143 30.769 0.00 0.00 0.00 2.83
2653 14374 7.432148 AGTTTGGGAAGTTAAGGAAAATGTT 57.568 32.000 0.00 0.00 0.00 2.71
2654 14375 8.541899 TTAGTTTGGGAAGTTAAGGAAAATGT 57.458 30.769 0.00 0.00 0.00 2.71
2655 14376 9.639601 GATTAGTTTGGGAAGTTAAGGAAAATG 57.360 33.333 0.00 0.00 0.00 2.32
2656 14377 9.374711 TGATTAGTTTGGGAAGTTAAGGAAAAT 57.625 29.630 0.00 0.00 0.00 1.82
2657 14378 8.770010 TGATTAGTTTGGGAAGTTAAGGAAAA 57.230 30.769 0.00 0.00 0.00 2.29
2658 14379 8.950007 ATGATTAGTTTGGGAAGTTAAGGAAA 57.050 30.769 0.00 0.00 0.00 3.13
2659 14380 8.390921 AGATGATTAGTTTGGGAAGTTAAGGAA 58.609 33.333 0.00 0.00 0.00 3.36
2660 14381 7.928873 AGATGATTAGTTTGGGAAGTTAAGGA 58.071 34.615 0.00 0.00 0.00 3.36
2661 14382 7.283354 GGAGATGATTAGTTTGGGAAGTTAAGG 59.717 40.741 0.00 0.00 0.00 2.69
2707 14455 1.541118 TGGATGAAGGGGCTCACCA 60.541 57.895 0.00 0.00 42.91 4.17
2762 14644 7.392113 ACCGTATTGTACCATGATTGAAAAGAA 59.608 33.333 0.00 0.00 0.00 2.52
2780 14662 3.493129 AGCGCATGTATGTAACCGTATTG 59.507 43.478 11.47 0.00 0.00 1.90
2782 14664 3.057019 CAGCGCATGTATGTAACCGTAT 58.943 45.455 11.47 0.00 0.00 3.06
2805 14687 4.096382 TGTGTTTGTTTGGAAGAGAGAAGC 59.904 41.667 0.00 0.00 0.00 3.86
2859 14741 4.141597 TGTCTGGTTTACAAGATGTGACCA 60.142 41.667 15.26 15.26 41.97 4.02
2861 14743 6.560253 ATTGTCTGGTTTACAAGATGTGAC 57.440 37.500 0.00 0.00 40.00 3.67
2907 14790 1.822990 GCTTTAGGGGTACTTTTGGGC 59.177 52.381 0.00 0.00 0.00 5.36
2909 14792 2.089201 CCGCTTTAGGGGTACTTTTGG 58.911 52.381 4.76 0.00 42.54 3.28
2916 14799 2.436911 GGATCTTTCCGCTTTAGGGGTA 59.563 50.000 12.01 0.69 46.93 3.69
2917 14800 1.212195 GGATCTTTCCGCTTTAGGGGT 59.788 52.381 12.01 0.00 46.93 4.95
2919 14802 1.211949 TGGGATCTTTCCGCTTTAGGG 59.788 52.381 0.00 0.00 43.63 3.53
2920 14803 2.565841 CTGGGATCTTTCCGCTTTAGG 58.434 52.381 0.00 0.00 43.63 2.69
2921 14804 1.943340 GCTGGGATCTTTCCGCTTTAG 59.057 52.381 0.00 0.00 43.63 1.85
2922 14805 1.559682 AGCTGGGATCTTTCCGCTTTA 59.440 47.619 0.00 0.00 43.63 1.85
2923 14806 0.329596 AGCTGGGATCTTTCCGCTTT 59.670 50.000 0.00 0.00 43.63 3.51
2924 14807 0.107459 GAGCTGGGATCTTTCCGCTT 60.107 55.000 0.00 0.00 43.63 4.68
2925 14808 0.980231 AGAGCTGGGATCTTTCCGCT 60.980 55.000 0.00 0.00 43.63 5.52
2926 14809 0.753262 TAGAGCTGGGATCTTTCCGC 59.247 55.000 0.00 0.00 43.63 5.54
2927 14810 2.289320 CCATAGAGCTGGGATCTTTCCG 60.289 54.545 0.00 0.00 43.63 4.30
2928 14811 3.415457 CCATAGAGCTGGGATCTTTCC 57.585 52.381 0.00 0.00 41.77 3.13
2937 14820 1.762522 ATGCCGACCCATAGAGCTGG 61.763 60.000 0.00 0.00 35.95 4.85
2938 14821 0.602106 CATGCCGACCCATAGAGCTG 60.602 60.000 0.00 0.00 0.00 4.24
2939 14822 1.050988 ACATGCCGACCCATAGAGCT 61.051 55.000 0.00 0.00 0.00 4.09
2950 14833 2.650322 GGGGATTCTTAAACATGCCGA 58.350 47.619 0.00 0.00 31.69 5.54
2955 14838 2.518407 GGGGAGGGGGATTCTTAAACAT 59.482 50.000 0.00 0.00 0.00 2.71
2970 14853 4.675303 TGTGGGTGGGAGGGGAGG 62.675 72.222 0.00 0.00 0.00 4.30
2971 14854 3.330720 GTGTGGGTGGGAGGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
2972 14855 3.869934 AGTGTGGGTGGGAGGGGA 61.870 66.667 0.00 0.00 0.00 4.81
2973 14856 3.650950 CAGTGTGGGTGGGAGGGG 61.651 72.222 0.00 0.00 0.00 4.79
2974 14857 2.854032 ACAGTGTGGGTGGGAGGG 60.854 66.667 0.00 0.00 0.00 4.30
2975 14858 2.431683 CACAGTGTGGGTGGGAGG 59.568 66.667 15.86 0.00 32.65 4.30
2976 14859 3.240491 ACACAGTGTGGGTGGGAG 58.760 61.111 26.40 0.00 40.54 4.30
2986 14869 3.349488 TCTTGTAGACGACACACAGTG 57.651 47.619 0.00 0.00 37.96 3.66
2987 14870 4.547532 GATTCTTGTAGACGACACACAGT 58.452 43.478 0.00 0.00 37.96 3.55
2988 14871 3.604198 CGATTCTTGTAGACGACACACAG 59.396 47.826 0.00 0.00 37.96 3.66
2989 14872 3.251487 TCGATTCTTGTAGACGACACACA 59.749 43.478 0.00 0.00 37.96 3.72
2990 14873 3.818387 TCGATTCTTGTAGACGACACAC 58.182 45.455 0.00 0.00 37.96 3.82
2991 14874 4.492791 TTCGATTCTTGTAGACGACACA 57.507 40.909 0.00 0.00 37.96 3.72
2992 14875 7.502177 TTAATTCGATTCTTGTAGACGACAC 57.498 36.000 0.00 0.00 37.96 3.67
2993 14876 7.595875 TGTTTAATTCGATTCTTGTAGACGACA 59.404 33.333 0.00 0.00 35.78 4.35
2994 14877 7.946043 TGTTTAATTCGATTCTTGTAGACGAC 58.054 34.615 0.00 0.00 32.89 4.34
2995 14878 7.201410 GCTGTTTAATTCGATTCTTGTAGACGA 60.201 37.037 0.00 0.00 0.00 4.20
2996 14879 6.895040 GCTGTTTAATTCGATTCTTGTAGACG 59.105 38.462 0.00 0.00 0.00 4.18
2997 14880 6.895040 CGCTGTTTAATTCGATTCTTGTAGAC 59.105 38.462 0.00 0.00 0.00 2.59
3010 14956 2.519963 GCCTTCTGCGCTGTTTAATTC 58.480 47.619 9.73 0.00 0.00 2.17
3030 14976 1.743394 GAGCCCAAACCCTATTTGTCG 59.257 52.381 0.00 0.00 0.00 4.35
3073 15020 6.314784 CAATTTTCCTAAGGTAGTTGAAGCG 58.685 40.000 0.00 0.00 0.00 4.68
3074 15021 6.093404 GCAATTTTCCTAAGGTAGTTGAAGC 58.907 40.000 0.00 0.00 0.00 3.86
3075 15022 6.434340 AGGCAATTTTCCTAAGGTAGTTGAAG 59.566 38.462 0.00 0.00 30.79 3.02
3084 15043 7.759886 GCTAGTTTTTAGGCAATTTTCCTAAGG 59.240 37.037 13.00 0.00 44.36 2.69
3098 15057 7.961283 GTCGTTTTTCCTATGCTAGTTTTTAGG 59.039 37.037 0.00 0.00 33.86 2.69
3099 15058 7.961283 GGTCGTTTTTCCTATGCTAGTTTTTAG 59.039 37.037 0.00 0.00 0.00 1.85
3111 15072 2.484742 AAGGCGGTCGTTTTTCCTAT 57.515 45.000 0.00 0.00 0.00 2.57
3357 15324 5.560966 TCGCATGAGGTTTATTCCTTTTC 57.439 39.130 0.00 0.00 38.02 2.29
3362 15329 4.695217 TGTTTCGCATGAGGTTTATTCC 57.305 40.909 0.00 0.00 0.00 3.01
3366 15333 7.441890 TTTAGAATGTTTCGCATGAGGTTTA 57.558 32.000 0.00 0.00 37.96 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.