Multiple sequence alignment - TraesCS3A01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G121100 chr3A 100.000 3596 0 0 1 3596 95135535 95131940 0.000000e+00 6641.0
1 TraesCS3A01G121100 chr3A 92.529 1566 84 15 946 2500 95127469 95125926 0.000000e+00 2213.0
2 TraesCS3A01G121100 chr3A 90.668 1586 110 15 931 2500 95359807 95358244 0.000000e+00 2074.0
3 TraesCS3A01G121100 chr3A 82.520 1516 219 28 946 2442 94859240 94857752 0.000000e+00 1290.0
4 TraesCS3A01G121100 chr3A 84.948 970 135 7 1513 2479 94254816 94253855 0.000000e+00 972.0
5 TraesCS3A01G121100 chr3A 81.818 539 74 12 946 1475 94255404 94254881 7.130000e-117 431.0
6 TraesCS3A01G121100 chr3A 87.798 377 33 5 2641 3004 655785171 655784795 2.570000e-116 429.0
7 TraesCS3A01G121100 chr3B 91.338 1570 97 15 947 2500 126733698 126732152 0.000000e+00 2109.0
8 TraesCS3A01G121100 chr3B 91.171 1563 95 18 946 2498 126664682 126663153 0.000000e+00 2082.0
9 TraesCS3A01G121100 chr3B 83.060 1523 206 28 946 2442 126400893 126399397 0.000000e+00 1336.0
10 TraesCS3A01G121100 chr3B 82.645 1429 211 22 1039 2448 126459027 126457617 0.000000e+00 1230.0
11 TraesCS3A01G121100 chr3B 93.837 503 21 5 947 1444 126715158 126714661 0.000000e+00 749.0
12 TraesCS3A01G121100 chr3B 93.841 276 10 4 947 1220 126755436 126755166 3.340000e-110 409.0
13 TraesCS3A01G121100 chr3B 83.462 260 24 5 17 262 126755798 126755544 1.300000e-54 224.0
14 TraesCS3A01G121100 chr3B 83.128 243 14 11 19 259 126665213 126664996 2.830000e-46 196.0
15 TraesCS3A01G121100 chr3B 92.553 94 6 1 256 348 567473605 567473512 2.250000e-27 134.0
16 TraesCS3A01G121100 chr3D 90.932 1566 106 18 946 2500 81122287 81120747 0.000000e+00 2073.0
17 TraesCS3A01G121100 chr3D 93.031 904 52 5 1597 2500 81057149 81056257 0.000000e+00 1310.0
18 TraesCS3A01G121100 chr3D 83.170 1426 196 20 1047 2442 80917501 80916090 0.000000e+00 1264.0
19 TraesCS3A01G121100 chr3D 82.427 1434 211 21 1039 2448 80630486 80629070 0.000000e+00 1214.0
20 TraesCS3A01G121100 chr3D 84.324 976 134 13 1513 2481 80600885 80599922 0.000000e+00 937.0
21 TraesCS3A01G121100 chr3D 89.164 646 47 2 946 1591 81057820 81057198 0.000000e+00 784.0
22 TraesCS3A01G121100 chr3D 80.917 545 70 14 947 1491 80601450 80600940 2.010000e-107 399.0
23 TraesCS3A01G121100 chr3D 88.142 253 15 2 24 262 81058392 81058141 1.630000e-73 287.0
24 TraesCS3A01G121100 chr3D 84.951 206 29 2 2836 3041 95569825 95569622 1.310000e-49 207.0
25 TraesCS3A01G121100 chr3D 79.474 190 20 9 3034 3220 49497882 49497709 2.270000e-22 117.0
26 TraesCS3A01G121100 chr3D 94.286 35 2 0 1406 1440 396434517 396434551 2.000000e-03 54.7
27 TraesCS3A01G121100 chr7D 80.028 1407 215 36 1064 2459 50428902 50427551 0.000000e+00 981.0
28 TraesCS3A01G121100 chr7D 79.835 1210 213 22 1271 2470 50641567 50640379 0.000000e+00 854.0
29 TraesCS3A01G121100 chr7D 80.795 151 22 6 1293 1441 613522270 613522415 1.060000e-20 111.0
30 TraesCS3A01G121100 chr1D 87.617 856 71 15 2641 3483 479335120 479334287 0.000000e+00 961.0
31 TraesCS3A01G121100 chr1D 82.670 352 37 20 3258 3596 479334472 479334132 1.260000e-74 291.0
32 TraesCS3A01G121100 chr1D 84.138 145 22 1 2748 2892 41464815 41464672 4.840000e-29 139.0
33 TraesCS3A01G121100 chr1D 77.075 253 38 13 3034 3284 417781200 417780966 1.050000e-25 128.0
34 TraesCS3A01G121100 chr1D 95.714 70 2 1 867 935 439944040 439944109 1.060000e-20 111.0
35 TraesCS3A01G121100 chr1D 80.808 99 15 1 3034 3132 417781322 417781228 1.380000e-09 75.0
36 TraesCS3A01G121100 chr5B 87.355 862 66 20 2641 3483 460490158 460490995 0.000000e+00 948.0
37 TraesCS3A01G121100 chr5B 91.748 206 10 5 3390 3595 460490970 460491168 2.730000e-71 279.0
38 TraesCS3A01G121100 chr5B 81.191 319 46 11 3121 3431 393567328 393567640 9.970000e-61 244.0
39 TraesCS3A01G121100 chr5B 94.382 89 5 0 259 347 22106485 22106397 1.740000e-28 137.0
40 TraesCS3A01G121100 chr5B 94.382 89 5 0 259 347 22114549 22114461 1.740000e-28 137.0
41 TraesCS3A01G121100 chr1B 88.763 792 60 16 2656 3431 266947761 266946983 0.000000e+00 942.0
42 TraesCS3A01G121100 chr1B 95.714 70 2 1 867 935 633710599 633710668 1.060000e-20 111.0
43 TraesCS3A01G121100 chr6A 89.281 737 58 12 2840 3565 212381115 212380389 0.000000e+00 904.0
44 TraesCS3A01G121100 chr6A 86.420 405 38 7 2641 3036 574654580 574654976 9.230000e-116 427.0
45 TraesCS3A01G121100 chr6A 80.534 262 39 12 2749 3007 23226183 23226435 1.320000e-44 191.0
46 TraesCS3A01G121100 chr6A 75.329 304 40 23 3035 3310 574655156 574655452 2.930000e-21 113.0
47 TraesCS3A01G121100 chr4A 80.632 1203 200 28 1271 2459 665318672 665317489 0.000000e+00 900.0
48 TraesCS3A01G121100 chr4A 94.265 279 16 0 543 821 722878121 722877843 9.230000e-116 427.0
49 TraesCS3A01G121100 chr4A 79.890 363 55 11 2644 2994 635353826 635354182 2.140000e-62 250.0
50 TraesCS3A01G121100 chr4A 95.714 70 2 1 867 935 309452767 309452698 1.060000e-20 111.0
51 TraesCS3A01G121100 chr4B 88.629 642 56 11 2641 3276 554313813 554314443 0.000000e+00 765.0
52 TraesCS3A01G121100 chr4B 84.038 213 25 9 2747 2954 580016530 580016322 2.830000e-46 196.0
53 TraesCS3A01G121100 chr4B 75.889 253 42 14 3034 3273 647706724 647706478 1.060000e-20 111.0
54 TraesCS3A01G121100 chr7B 77.488 1417 223 59 1055 2442 703995574 703996923 0.000000e+00 761.0
55 TraesCS3A01G121100 chr7B 86.735 686 60 12 2641 3316 130071725 130071061 0.000000e+00 734.0
56 TraesCS3A01G121100 chr7B 94.245 278 16 0 543 820 142778266 142777989 3.320000e-115 425.0
57 TraesCS3A01G121100 chr7B 93.662 284 17 1 538 820 164593231 164593514 1.190000e-114 424.0
58 TraesCS3A01G121100 chr7B 93.031 287 20 0 536 822 679698174 679697888 1.540000e-113 420.0
59 TraesCS3A01G121100 chr7B 93.289 149 10 0 3396 3544 130069453 130069305 1.680000e-53 220.0
60 TraesCS3A01G121100 chr7B 81.273 267 38 11 2747 3007 642280148 642279888 4.710000e-49 206.0
61 TraesCS3A01G121100 chr7B 91.579 95 8 0 259 353 627055582 627055488 8.100000e-27 132.0
62 TraesCS3A01G121100 chr7A 94.245 278 16 0 543 820 245744697 245744420 3.320000e-115 425.0
63 TraesCS3A01G121100 chr7A 95.714 70 2 1 867 935 104058552 104058483 1.060000e-20 111.0
64 TraesCS3A01G121100 chr7A 89.706 68 7 0 3413 3480 653005404 653005337 1.780000e-13 87.9
65 TraesCS3A01G121100 chr2B 94.545 275 15 0 544 818 589980279 589980553 3.320000e-115 425.0
66 TraesCS3A01G121100 chr2B 80.256 390 56 14 2642 3016 394088622 394089005 1.270000e-69 274.0
67 TraesCS3A01G121100 chr2B 88.785 107 10 2 239 345 78867989 78868093 2.910000e-26 130.0
68 TraesCS3A01G121100 chr2A 94.245 278 16 0 543 820 641966316 641966593 3.320000e-115 425.0
69 TraesCS3A01G121100 chr6B 94.203 276 14 2 544 818 637124576 637124850 1.540000e-113 420.0
70 TraesCS3A01G121100 chr6B 93.286 283 18 1 543 825 499153921 499154202 2.000000e-112 416.0
71 TraesCS3A01G121100 chr6B 80.989 263 37 13 2749 3007 40668535 40668282 2.830000e-46 196.0
72 TraesCS3A01G121100 chr6B 94.444 90 5 0 259 348 77773316 77773405 4.840000e-29 139.0
73 TraesCS3A01G121100 chr6B 95.349 86 4 0 260 345 645538311 645538226 1.740000e-28 137.0
74 TraesCS3A01G121100 chr2D 78.974 390 61 14 2641 3016 324993366 324993748 2.770000e-61 246.0
75 TraesCS3A01G121100 chr2D 87.850 214 18 7 2775 2984 498783249 498783458 9.970000e-61 244.0
76 TraesCS3A01G121100 chr2D 92.473 93 7 0 260 352 5769002 5769094 2.250000e-27 134.0
77 TraesCS3A01G121100 chr2D 94.643 56 3 0 2982 3037 498783433 498783488 1.780000e-13 87.9
78 TraesCS3A01G121100 chr6D 78.144 334 58 11 2681 3007 25022120 25021795 7.880000e-47 198.0
79 TraesCS3A01G121100 chr6D 82.128 235 37 5 2749 2982 24599304 24599534 2.830000e-46 196.0
80 TraesCS3A01G121100 chr1A 78.788 264 42 8 2642 2892 41168431 41168169 7.990000e-37 165.0
81 TraesCS3A01G121100 chr1A 78.788 264 42 8 2642 2892 41511981 41512243 7.990000e-37 165.0
82 TraesCS3A01G121100 chr1A 83.974 156 19 4 2711 2861 508124674 508124828 1.040000e-30 145.0
83 TraesCS3A01G121100 chr1A 77.826 230 31 11 3034 3261 260748802 260748591 1.360000e-24 124.0
84 TraesCS3A01G121100 chr1A 76.154 260 44 13 3034 3283 576295050 576294799 1.750000e-23 121.0
85 TraesCS3A01G121100 chr1A 95.714 70 2 1 867 935 554475891 554475960 1.060000e-20 111.0
86 TraesCS3A01G121100 chr4D 90.598 117 11 0 2747 2863 464233219 464233335 4.810000e-34 156.0
87 TraesCS3A01G121100 chr5A 83.234 167 25 3 3413 3579 44408256 44408419 2.240000e-32 150.0
88 TraesCS3A01G121100 chrUn 94.382 89 5 0 259 347 289138432 289138344 1.740000e-28 137.0
89 TraesCS3A01G121100 chr5D 95.714 70 2 1 867 935 6259473 6259404 1.060000e-20 111.0
90 TraesCS3A01G121100 chr5D 95.714 70 2 1 867 935 7636356 7636287 1.060000e-20 111.0
91 TraesCS3A01G121100 chr5D 95.714 70 2 1 867 935 503307302 503307371 1.060000e-20 111.0
92 TraesCS3A01G121100 chr5D 95.714 70 2 1 867 935 512406343 512406412 1.060000e-20 111.0
93 TraesCS3A01G121100 chr5D 86.885 61 8 0 473 533 512223101 512223041 6.440000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G121100 chr3A 95131940 95135535 3595 True 6641.000000 6641 100.000000 1 3596 1 chr3A.!!$R3 3595
1 TraesCS3A01G121100 chr3A 95125926 95127469 1543 True 2213.000000 2213 92.529000 946 2500 1 chr3A.!!$R2 1554
2 TraesCS3A01G121100 chr3A 95358244 95359807 1563 True 2074.000000 2074 90.668000 931 2500 1 chr3A.!!$R4 1569
3 TraesCS3A01G121100 chr3A 94857752 94859240 1488 True 1290.000000 1290 82.520000 946 2442 1 chr3A.!!$R1 1496
4 TraesCS3A01G121100 chr3A 94253855 94255404 1549 True 701.500000 972 83.383000 946 2479 2 chr3A.!!$R6 1533
5 TraesCS3A01G121100 chr3B 126732152 126733698 1546 True 2109.000000 2109 91.338000 947 2500 1 chr3B.!!$R4 1553
6 TraesCS3A01G121100 chr3B 126399397 126400893 1496 True 1336.000000 1336 83.060000 946 2442 1 chr3B.!!$R1 1496
7 TraesCS3A01G121100 chr3B 126457617 126459027 1410 True 1230.000000 1230 82.645000 1039 2448 1 chr3B.!!$R2 1409
8 TraesCS3A01G121100 chr3B 126663153 126665213 2060 True 1139.000000 2082 87.149500 19 2498 2 chr3B.!!$R6 2479
9 TraesCS3A01G121100 chr3B 126755166 126755798 632 True 316.500000 409 88.651500 17 1220 2 chr3B.!!$R7 1203
10 TraesCS3A01G121100 chr3D 81120747 81122287 1540 True 2073.000000 2073 90.932000 946 2500 1 chr3D.!!$R4 1554
11 TraesCS3A01G121100 chr3D 80916090 80917501 1411 True 1264.000000 1264 83.170000 1047 2442 1 chr3D.!!$R3 1395
12 TraesCS3A01G121100 chr3D 80629070 80630486 1416 True 1214.000000 1214 82.427000 1039 2448 1 chr3D.!!$R2 1409
13 TraesCS3A01G121100 chr3D 81056257 81058392 2135 True 793.666667 1310 90.112333 24 2500 3 chr3D.!!$R7 2476
14 TraesCS3A01G121100 chr3D 80599922 80601450 1528 True 668.000000 937 82.620500 947 2481 2 chr3D.!!$R6 1534
15 TraesCS3A01G121100 chr7D 50427551 50428902 1351 True 981.000000 981 80.028000 1064 2459 1 chr7D.!!$R1 1395
16 TraesCS3A01G121100 chr7D 50640379 50641567 1188 True 854.000000 854 79.835000 1271 2470 1 chr7D.!!$R2 1199
17 TraesCS3A01G121100 chr1D 479334132 479335120 988 True 626.000000 961 85.143500 2641 3596 2 chr1D.!!$R3 955
18 TraesCS3A01G121100 chr5B 460490158 460491168 1010 False 613.500000 948 89.551500 2641 3595 2 chr5B.!!$F2 954
19 TraesCS3A01G121100 chr1B 266946983 266947761 778 True 942.000000 942 88.763000 2656 3431 1 chr1B.!!$R1 775
20 TraesCS3A01G121100 chr6A 212380389 212381115 726 True 904.000000 904 89.281000 2840 3565 1 chr6A.!!$R1 725
21 TraesCS3A01G121100 chr6A 574654580 574655452 872 False 270.000000 427 80.874500 2641 3310 2 chr6A.!!$F2 669
22 TraesCS3A01G121100 chr4A 665317489 665318672 1183 True 900.000000 900 80.632000 1271 2459 1 chr4A.!!$R2 1188
23 TraesCS3A01G121100 chr4B 554313813 554314443 630 False 765.000000 765 88.629000 2641 3276 1 chr4B.!!$F1 635
24 TraesCS3A01G121100 chr7B 703995574 703996923 1349 False 761.000000 761 77.488000 1055 2442 1 chr7B.!!$F2 1387
25 TraesCS3A01G121100 chr7B 130069305 130071725 2420 True 477.000000 734 90.012000 2641 3544 2 chr7B.!!$R5 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 996 0.108138 GCGGAGTATTCACAGTGGCT 60.108 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2637 2962 0.191064 TCTGTGTGGGGAGAGAGGTT 59.809 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.223144 ACTACAAATTTTCCAAGTGGCCT 58.777 39.130 3.32 0.00 34.44 5.19
71 72 2.397549 GCACCAAGCAATCAAACACTC 58.602 47.619 0.00 0.00 44.79 3.51
81 82 5.003804 GCAATCAAACACTCCCTCTTCTTA 58.996 41.667 0.00 0.00 0.00 2.10
132 133 6.122964 ACAATCCTCCTTCTACAAATTAGCC 58.877 40.000 0.00 0.00 0.00 3.93
177 180 4.074970 ACTCATCGTCCTTTTCTTTGCAT 58.925 39.130 0.00 0.00 0.00 3.96
262 279 2.093711 TCCATGTGTAGTGCGCAATACT 60.094 45.455 37.83 23.46 41.37 2.12
263 280 2.677836 CCATGTGTAGTGCGCAATACTT 59.322 45.455 37.83 24.38 41.37 2.24
264 281 3.242413 CCATGTGTAGTGCGCAATACTTC 60.242 47.826 37.83 30.61 41.37 3.01
265 282 2.343101 TGTGTAGTGCGCAATACTTCC 58.657 47.619 37.83 27.69 34.22 3.46
266 283 2.028476 TGTGTAGTGCGCAATACTTCCT 60.028 45.455 37.83 21.46 34.22 3.36
267 284 2.603560 GTGTAGTGCGCAATACTTCCTC 59.396 50.000 37.83 22.77 33.48 3.71
268 285 2.496070 TGTAGTGCGCAATACTTCCTCT 59.504 45.455 37.83 20.14 33.48 3.69
269 286 2.015736 AGTGCGCAATACTTCCTCTG 57.984 50.000 14.00 0.00 0.00 3.35
270 287 1.276421 AGTGCGCAATACTTCCTCTGT 59.724 47.619 14.00 0.00 0.00 3.41
271 288 2.076863 GTGCGCAATACTTCCTCTGTT 58.923 47.619 14.00 0.00 0.00 3.16
272 289 2.094417 GTGCGCAATACTTCCTCTGTTC 59.906 50.000 14.00 0.00 0.00 3.18
273 290 1.666189 GCGCAATACTTCCTCTGTTCC 59.334 52.381 0.30 0.00 0.00 3.62
274 291 2.935238 GCGCAATACTTCCTCTGTTCCA 60.935 50.000 0.30 0.00 0.00 3.53
275 292 3.334691 CGCAATACTTCCTCTGTTCCAA 58.665 45.455 0.00 0.00 0.00 3.53
276 293 3.751175 CGCAATACTTCCTCTGTTCCAAA 59.249 43.478 0.00 0.00 0.00 3.28
277 294 4.215399 CGCAATACTTCCTCTGTTCCAAAA 59.785 41.667 0.00 0.00 0.00 2.44
278 295 5.106157 CGCAATACTTCCTCTGTTCCAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
279 296 6.093495 CGCAATACTTCCTCTGTTCCAAAATA 59.907 38.462 0.00 0.00 0.00 1.40
280 297 7.361713 CGCAATACTTCCTCTGTTCCAAAATAA 60.362 37.037 0.00 0.00 0.00 1.40
281 298 8.303876 GCAATACTTCCTCTGTTCCAAAATAAA 58.696 33.333 0.00 0.00 0.00 1.40
284 301 9.753674 ATACTTCCTCTGTTCCAAAATAAATGA 57.246 29.630 0.00 0.00 0.00 2.57
285 302 8.655935 ACTTCCTCTGTTCCAAAATAAATGAT 57.344 30.769 0.00 0.00 0.00 2.45
286 303 9.093458 ACTTCCTCTGTTCCAAAATAAATGATT 57.907 29.630 0.00 0.00 0.00 2.57
287 304 9.578439 CTTCCTCTGTTCCAAAATAAATGATTC 57.422 33.333 0.00 0.00 0.00 2.52
288 305 8.648698 TCCTCTGTTCCAAAATAAATGATTCA 57.351 30.769 0.00 0.00 0.00 2.57
289 306 9.087871 TCCTCTGTTCCAAAATAAATGATTCAA 57.912 29.630 0.00 0.00 0.00 2.69
290 307 9.143631 CCTCTGTTCCAAAATAAATGATTCAAC 57.856 33.333 0.00 0.00 0.00 3.18
291 308 9.918630 CTCTGTTCCAAAATAAATGATTCAACT 57.081 29.630 0.00 0.00 0.00 3.16
297 314 9.487790 TCCAAAATAAATGATTCAACTTTGTCC 57.512 29.630 0.00 0.00 0.00 4.02
298 315 9.492973 CCAAAATAAATGATTCAACTTTGTCCT 57.507 29.630 0.00 0.00 0.00 3.85
307 324 8.974060 TGATTCAACTTTGTCCTAAAGTTAGT 57.026 30.769 15.03 6.67 45.57 2.24
310 327 9.841295 ATTCAACTTTGTCCTAAAGTTAGTACA 57.159 29.630 15.03 0.00 45.57 2.90
311 328 9.669887 TTCAACTTTGTCCTAAAGTTAGTACAA 57.330 29.630 15.03 5.42 45.57 2.41
312 329 9.669887 TCAACTTTGTCCTAAAGTTAGTACAAA 57.330 29.630 16.41 16.41 45.57 2.83
317 334 9.669887 TTTGTCCTAAAGTTAGTACAAAGTTGA 57.330 29.630 14.43 0.00 41.54 3.18
318 335 8.882415 TGTCCTAAAGTTAGTACAAAGTTGAG 57.118 34.615 0.00 0.00 28.39 3.02
319 336 8.480501 TGTCCTAAAGTTAGTACAAAGTTGAGT 58.519 33.333 0.00 0.00 28.39 3.41
320 337 8.976471 GTCCTAAAGTTAGTACAAAGTTGAGTC 58.024 37.037 0.00 0.00 0.00 3.36
321 338 8.698210 TCCTAAAGTTAGTACAAAGTTGAGTCA 58.302 33.333 0.00 0.00 0.00 3.41
322 339 9.490379 CCTAAAGTTAGTACAAAGTTGAGTCAT 57.510 33.333 0.00 0.00 0.00 3.06
330 347 8.467402 AGTACAAAGTTGAGTCATCTATTTCG 57.533 34.615 4.14 0.00 0.00 3.46
331 348 6.727824 ACAAAGTTGAGTCATCTATTTCGG 57.272 37.500 4.14 0.00 0.00 4.30
332 349 6.464222 ACAAAGTTGAGTCATCTATTTCGGA 58.536 36.000 4.14 0.00 0.00 4.55
333 350 6.934645 ACAAAGTTGAGTCATCTATTTCGGAA 59.065 34.615 4.14 0.00 0.00 4.30
334 351 6.969828 AAGTTGAGTCATCTATTTCGGAAC 57.030 37.500 4.14 0.00 0.00 3.62
359 376 5.479375 GGAGGGAGTACATAATTACCATCGA 59.521 44.000 0.00 0.00 0.00 3.59
370 387 7.720074 ACATAATTACCATCGAGTCTGTCTAGA 59.280 37.037 0.00 0.00 32.75 2.43
371 388 8.568794 CATAATTACCATCGAGTCTGTCTAGAA 58.431 37.037 0.00 0.00 34.01 2.10
372 389 5.814764 TTACCATCGAGTCTGTCTAGAAC 57.185 43.478 0.00 0.00 34.01 3.01
374 391 4.274147 ACCATCGAGTCTGTCTAGAACAT 58.726 43.478 0.00 0.00 37.23 2.71
375 392 5.437946 ACCATCGAGTCTGTCTAGAACATA 58.562 41.667 0.00 0.00 37.23 2.29
377 394 6.547880 ACCATCGAGTCTGTCTAGAACATATT 59.452 38.462 0.00 0.00 37.23 1.28
378 395 7.068839 ACCATCGAGTCTGTCTAGAACATATTT 59.931 37.037 0.00 0.00 37.23 1.40
379 396 8.568794 CCATCGAGTCTGTCTAGAACATATTTA 58.431 37.037 0.00 0.00 37.23 1.40
380 397 9.605955 CATCGAGTCTGTCTAGAACATATTTAG 57.394 37.037 0.00 0.00 37.23 1.85
382 399 9.562408 TCGAGTCTGTCTAGAACATATTTAGAT 57.438 33.333 0.00 0.00 37.23 1.98
407 466 5.989477 TGCCTTAGTTACTGCACATCTAAT 58.011 37.500 0.00 0.00 0.00 1.73
418 477 6.789262 ACTGCACATCTAATTGACTTAATGC 58.211 36.000 0.00 0.00 0.00 3.56
420 479 7.067859 ACTGCACATCTAATTGACTTAATGCAT 59.932 33.333 0.00 0.00 0.00 3.96
421 480 8.449251 TGCACATCTAATTGACTTAATGCATA 57.551 30.769 0.00 0.00 0.00 3.14
423 482 9.390795 GCACATCTAATTGACTTAATGCATAAG 57.609 33.333 0.00 6.97 45.48 1.73
470 538 9.764363 ATACTAAGATGAATCTTTGCGTATGAA 57.236 29.630 10.66 0.00 44.28 2.57
508 576 8.413309 ACTTAGATGTGCAATATTTATGGCAT 57.587 30.769 4.88 4.88 43.91 4.40
544 612 8.166367 GCTTCAGCAAAACTTATTATGACAAG 57.834 34.615 0.00 0.00 41.59 3.16
545 613 7.274250 GCTTCAGCAAAACTTATTATGACAAGG 59.726 37.037 0.00 0.00 41.59 3.61
546 614 6.620678 TCAGCAAAACTTATTATGACAAGGC 58.379 36.000 0.00 0.00 0.00 4.35
547 615 6.434028 TCAGCAAAACTTATTATGACAAGGCT 59.566 34.615 0.00 0.00 0.00 4.58
548 616 6.529125 CAGCAAAACTTATTATGACAAGGCTG 59.471 38.462 0.00 0.00 36.89 4.85
549 617 5.807011 GCAAAACTTATTATGACAAGGCTGG 59.193 40.000 0.00 0.00 0.00 4.85
550 618 6.572314 GCAAAACTTATTATGACAAGGCTGGT 60.572 38.462 0.00 0.00 0.00 4.00
551 619 7.378181 CAAAACTTATTATGACAAGGCTGGTT 58.622 34.615 0.00 0.00 0.00 3.67
552 620 6.515272 AACTTATTATGACAAGGCTGGTTG 57.485 37.500 0.00 0.00 0.00 3.77
553 621 5.570320 ACTTATTATGACAAGGCTGGTTGT 58.430 37.500 0.00 0.00 43.49 3.32
554 622 6.717289 ACTTATTATGACAAGGCTGGTTGTA 58.283 36.000 0.00 0.00 40.83 2.41
555 623 7.172342 ACTTATTATGACAAGGCTGGTTGTAA 58.828 34.615 0.00 0.00 40.83 2.41
556 624 7.834181 ACTTATTATGACAAGGCTGGTTGTAAT 59.166 33.333 13.82 13.82 40.83 1.89
557 625 5.895636 TTATGACAAGGCTGGTTGTAATG 57.104 39.130 0.00 0.00 40.83 1.90
558 626 2.513753 TGACAAGGCTGGTTGTAATGG 58.486 47.619 0.00 0.00 40.83 3.16
559 627 2.158534 TGACAAGGCTGGTTGTAATGGT 60.159 45.455 0.00 0.00 40.83 3.55
560 628 3.073209 TGACAAGGCTGGTTGTAATGGTA 59.927 43.478 0.00 0.00 40.83 3.25
561 629 3.686016 ACAAGGCTGGTTGTAATGGTAG 58.314 45.455 0.00 0.00 38.92 3.18
562 630 3.073946 ACAAGGCTGGTTGTAATGGTAGT 59.926 43.478 0.00 0.00 38.92 2.73
563 631 4.287585 ACAAGGCTGGTTGTAATGGTAGTA 59.712 41.667 0.00 0.00 38.92 1.82
564 632 5.045140 ACAAGGCTGGTTGTAATGGTAGTAT 60.045 40.000 0.00 0.00 38.92 2.12
565 633 5.710409 AGGCTGGTTGTAATGGTAGTATT 57.290 39.130 0.00 0.00 0.00 1.89
566 634 6.818281 AGGCTGGTTGTAATGGTAGTATTA 57.182 37.500 0.00 0.00 0.00 0.98
567 635 7.388638 AGGCTGGTTGTAATGGTAGTATTAT 57.611 36.000 0.00 0.00 0.00 1.28
568 636 8.500667 AGGCTGGTTGTAATGGTAGTATTATA 57.499 34.615 0.00 0.00 0.00 0.98
569 637 8.594550 AGGCTGGTTGTAATGGTAGTATTATAG 58.405 37.037 0.00 0.00 0.00 1.31
570 638 7.333672 GGCTGGTTGTAATGGTAGTATTATAGC 59.666 40.741 0.00 0.00 0.00 2.97
571 639 8.095169 GCTGGTTGTAATGGTAGTATTATAGCT 58.905 37.037 0.00 0.00 0.00 3.32
586 654 9.988815 AGTATTATAGCTAGTATAATGCATGCC 57.011 33.333 16.68 0.00 43.78 4.40
587 655 9.764363 GTATTATAGCTAGTATAATGCATGCCA 57.236 33.333 16.68 3.52 42.17 4.92
589 657 6.992063 ATAGCTAGTATAATGCATGCCAAC 57.008 37.500 16.68 6.08 0.00 3.77
590 658 4.978099 AGCTAGTATAATGCATGCCAACT 58.022 39.130 16.68 13.02 0.00 3.16
591 659 6.114187 AGCTAGTATAATGCATGCCAACTA 57.886 37.500 16.68 13.43 0.00 2.24
592 660 6.169094 AGCTAGTATAATGCATGCCAACTAG 58.831 40.000 23.66 23.66 38.50 2.57
593 661 5.352569 GCTAGTATAATGCATGCCAACTAGG 59.647 44.000 26.20 16.50 36.85 3.02
607 675 5.002464 CCAACTAGGCAATTTTGATGAGG 57.998 43.478 0.00 0.00 0.00 3.86
608 676 4.463891 CCAACTAGGCAATTTTGATGAGGT 59.536 41.667 0.00 0.00 0.00 3.85
609 677 5.404946 CAACTAGGCAATTTTGATGAGGTG 58.595 41.667 0.00 0.00 0.00 4.00
610 678 4.666512 ACTAGGCAATTTTGATGAGGTGT 58.333 39.130 0.00 0.00 0.00 4.16
611 679 4.702131 ACTAGGCAATTTTGATGAGGTGTC 59.298 41.667 0.00 0.00 0.00 3.67
612 680 3.499338 AGGCAATTTTGATGAGGTGTCA 58.501 40.909 0.00 0.00 37.02 3.58
613 681 4.091549 AGGCAATTTTGATGAGGTGTCAT 58.908 39.130 0.00 0.00 46.75 3.06
614 682 5.263599 AGGCAATTTTGATGAGGTGTCATA 58.736 37.500 0.00 0.00 43.92 2.15
615 683 5.359009 AGGCAATTTTGATGAGGTGTCATAG 59.641 40.000 0.00 0.00 43.92 2.23
616 684 5.039333 GCAATTTTGATGAGGTGTCATAGC 58.961 41.667 0.00 0.00 43.92 2.97
617 685 5.393352 GCAATTTTGATGAGGTGTCATAGCA 60.393 40.000 0.00 0.00 43.92 3.49
618 686 6.682113 GCAATTTTGATGAGGTGTCATAGCAT 60.682 38.462 0.00 0.00 43.92 3.79
619 687 7.262772 CAATTTTGATGAGGTGTCATAGCATT 58.737 34.615 0.00 0.00 43.92 3.56
620 688 8.407832 CAATTTTGATGAGGTGTCATAGCATTA 58.592 33.333 0.00 0.00 43.92 1.90
621 689 7.936496 TTTTGATGAGGTGTCATAGCATTAA 57.064 32.000 0.00 0.00 43.92 1.40
622 690 7.936496 TTTGATGAGGTGTCATAGCATTAAA 57.064 32.000 0.00 0.00 43.92 1.52
623 691 8.523915 TTTGATGAGGTGTCATAGCATTAAAT 57.476 30.769 0.00 0.00 43.92 1.40
624 692 7.500720 TGATGAGGTGTCATAGCATTAAATG 57.499 36.000 0.00 0.00 43.92 2.32
625 693 7.281841 TGATGAGGTGTCATAGCATTAAATGA 58.718 34.615 0.00 0.00 43.92 2.57
626 694 7.774625 TGATGAGGTGTCATAGCATTAAATGAA 59.225 33.333 0.00 0.00 43.92 2.57
627 695 7.558161 TGAGGTGTCATAGCATTAAATGAAG 57.442 36.000 0.00 0.00 34.06 3.02
628 696 7.337938 TGAGGTGTCATAGCATTAAATGAAGA 58.662 34.615 0.00 0.00 34.06 2.87
629 697 7.828717 TGAGGTGTCATAGCATTAAATGAAGAA 59.171 33.333 0.00 0.00 34.06 2.52
630 698 8.579850 AGGTGTCATAGCATTAAATGAAGAAA 57.420 30.769 0.00 0.00 34.06 2.52
631 699 8.680903 AGGTGTCATAGCATTAAATGAAGAAAG 58.319 33.333 0.00 0.00 34.06 2.62
632 700 8.677300 GGTGTCATAGCATTAAATGAAGAAAGA 58.323 33.333 0.00 0.00 34.06 2.52
633 701 9.713740 GTGTCATAGCATTAAATGAAGAAAGAG 57.286 33.333 0.00 0.00 34.06 2.85
634 702 9.671279 TGTCATAGCATTAAATGAAGAAAGAGA 57.329 29.630 0.00 0.00 34.06 3.10
636 704 9.334947 TCATAGCATTAAATGAAGAAAGAGAGG 57.665 33.333 0.00 0.00 0.00 3.69
637 705 8.566260 CATAGCATTAAATGAAGAAAGAGAGGG 58.434 37.037 0.00 0.00 0.00 4.30
638 706 6.488715 AGCATTAAATGAAGAAAGAGAGGGT 58.511 36.000 0.00 0.00 0.00 4.34
639 707 6.376581 AGCATTAAATGAAGAAAGAGAGGGTG 59.623 38.462 0.00 0.00 0.00 4.61
640 708 6.151817 GCATTAAATGAAGAAAGAGAGGGTGT 59.848 38.462 0.00 0.00 0.00 4.16
641 709 7.336931 GCATTAAATGAAGAAAGAGAGGGTGTA 59.663 37.037 0.00 0.00 0.00 2.90
642 710 9.231297 CATTAAATGAAGAAAGAGAGGGTGTAA 57.769 33.333 0.00 0.00 0.00 2.41
643 711 9.981460 ATTAAATGAAGAAAGAGAGGGTGTAAT 57.019 29.630 0.00 0.00 0.00 1.89
646 714 9.620259 AAATGAAGAAAGAGAGGGTGTAATATC 57.380 33.333 0.00 0.00 0.00 1.63
647 715 7.733773 TGAAGAAAGAGAGGGTGTAATATCA 57.266 36.000 0.00 0.00 0.00 2.15
648 716 8.324191 TGAAGAAAGAGAGGGTGTAATATCAT 57.676 34.615 0.00 0.00 0.00 2.45
649 717 9.434275 TGAAGAAAGAGAGGGTGTAATATCATA 57.566 33.333 0.00 0.00 0.00 2.15
652 720 9.607333 AGAAAGAGAGGGTGTAATATCATATCA 57.393 33.333 0.00 0.00 0.00 2.15
655 723 9.552695 AAGAGAGGGTGTAATATCATATCATGA 57.447 33.333 0.00 0.00 44.55 3.07
695 763 5.484173 TGCTATGCTACTTTGTGTTATGC 57.516 39.130 0.00 0.00 0.00 3.14
696 764 4.940654 TGCTATGCTACTTTGTGTTATGCA 59.059 37.500 0.00 0.00 34.61 3.96
697 765 5.589855 TGCTATGCTACTTTGTGTTATGCAT 59.410 36.000 3.79 3.79 39.83 3.96
698 766 5.911280 GCTATGCTACTTTGTGTTATGCATG 59.089 40.000 10.16 0.00 38.39 4.06
699 767 6.238456 GCTATGCTACTTTGTGTTATGCATGA 60.238 38.462 10.16 0.00 38.39 3.07
700 768 5.295431 TGCTACTTTGTGTTATGCATGAC 57.705 39.130 14.37 14.37 0.00 3.06
701 769 4.759183 TGCTACTTTGTGTTATGCATGACA 59.241 37.500 19.43 19.43 0.00 3.58
702 770 5.240403 TGCTACTTTGTGTTATGCATGACAA 59.760 36.000 24.17 18.25 0.00 3.18
703 771 6.072008 TGCTACTTTGTGTTATGCATGACAAT 60.072 34.615 24.17 11.10 0.00 2.71
704 772 7.120432 TGCTACTTTGTGTTATGCATGACAATA 59.880 33.333 24.17 14.31 0.00 1.90
705 773 7.967854 GCTACTTTGTGTTATGCATGACAATAA 59.032 33.333 24.17 18.67 0.00 1.40
706 774 9.838975 CTACTTTGTGTTATGCATGACAATAAA 57.161 29.630 24.17 23.18 0.00 1.40
712 780 9.394767 TGTGTTATGCATGACAATAAATAGAGT 57.605 29.630 24.17 0.00 0.00 3.24
756 824 8.671987 ATGATACTATGCATTAGGAAGGTAGT 57.328 34.615 3.54 0.88 31.68 2.73
757 825 9.769677 ATGATACTATGCATTAGGAAGGTAGTA 57.230 33.333 3.54 3.44 31.68 1.82
758 826 9.769677 TGATACTATGCATTAGGAAGGTAGTAT 57.230 33.333 3.54 8.56 36.89 2.12
760 828 9.769677 ATACTATGCATTAGGAAGGTAGTATCA 57.230 33.333 3.54 0.00 31.70 2.15
761 829 8.671987 ACTATGCATTAGGAAGGTAGTATCAT 57.328 34.615 3.54 0.00 31.68 2.45
762 830 9.769677 ACTATGCATTAGGAAGGTAGTATCATA 57.230 33.333 3.54 0.00 31.68 2.15
764 832 7.849322 TGCATTAGGAAGGTAGTATCATACA 57.151 36.000 0.00 0.00 0.00 2.29
765 833 7.667557 TGCATTAGGAAGGTAGTATCATACAC 58.332 38.462 0.00 0.00 0.00 2.90
766 834 7.509318 TGCATTAGGAAGGTAGTATCATACACT 59.491 37.037 0.00 0.00 0.00 3.55
767 835 9.021807 GCATTAGGAAGGTAGTATCATACACTA 57.978 37.037 0.00 0.00 0.00 2.74
813 881 9.122954 AGTATATGATATTCCCCATTACAACCA 57.877 33.333 0.00 0.00 0.00 3.67
814 882 9.396022 GTATATGATATTCCCCATTACAACCAG 57.604 37.037 0.00 0.00 0.00 4.00
815 883 4.469657 TGATATTCCCCATTACAACCAGC 58.530 43.478 0.00 0.00 0.00 4.85
816 884 2.159179 ATTCCCCATTACAACCAGCC 57.841 50.000 0.00 0.00 0.00 4.85
826 894 1.965930 CAACCAGCCTAACGCAGCA 60.966 57.895 0.00 0.00 41.38 4.41
831 899 1.302832 AGCCTAACGCAGCAAGCTT 60.303 52.632 0.00 0.00 42.61 3.74
832 900 0.890996 AGCCTAACGCAGCAAGCTTT 60.891 50.000 0.00 0.00 42.61 3.51
843 911 1.150827 GCAAGCTTTCAAATGGCACC 58.849 50.000 0.00 0.00 0.00 5.01
847 915 1.276989 AGCTTTCAAATGGCACCCATG 59.723 47.619 0.00 0.00 44.40 3.66
868 957 6.351286 CCATGACTTCATATCATATCCCGACA 60.351 42.308 0.00 0.00 34.99 4.35
870 959 7.244886 TGACTTCATATCATATCCCGACATT 57.755 36.000 0.00 0.00 0.00 2.71
871 960 8.361169 TGACTTCATATCATATCCCGACATTA 57.639 34.615 0.00 0.00 0.00 1.90
872 961 8.811994 TGACTTCATATCATATCCCGACATTAA 58.188 33.333 0.00 0.00 0.00 1.40
873 962 9.307121 GACTTCATATCATATCCCGACATTAAG 57.693 37.037 0.00 0.00 0.00 1.85
874 963 9.035890 ACTTCATATCATATCCCGACATTAAGA 57.964 33.333 0.00 0.00 0.00 2.10
876 965 9.653287 TTCATATCATATCCCGACATTAAGAAC 57.347 33.333 0.00 0.00 0.00 3.01
877 966 9.035890 TCATATCATATCCCGACATTAAGAACT 57.964 33.333 0.00 0.00 0.00 3.01
878 967 9.658799 CATATCATATCCCGACATTAAGAACTT 57.341 33.333 0.00 0.00 0.00 2.66
880 969 8.980481 ATCATATCCCGACATTAAGAACTTTT 57.020 30.769 0.00 0.00 0.00 2.27
881 970 8.433421 TCATATCCCGACATTAAGAACTTTTC 57.567 34.615 0.00 0.00 0.00 2.29
882 971 8.044309 TCATATCCCGACATTAAGAACTTTTCA 58.956 33.333 0.00 0.00 0.00 2.69
883 972 8.840321 CATATCCCGACATTAAGAACTTTTCAT 58.160 33.333 0.00 0.00 0.00 2.57
885 974 7.605410 TCCCGACATTAAGAACTTTTCATAC 57.395 36.000 0.00 0.00 0.00 2.39
886 975 7.391620 TCCCGACATTAAGAACTTTTCATACT 58.608 34.615 0.00 0.00 0.00 2.12
887 976 7.333423 TCCCGACATTAAGAACTTTTCATACTG 59.667 37.037 0.00 0.00 0.00 2.74
888 977 7.414098 CCCGACATTAAGAACTTTTCATACTGG 60.414 40.741 0.00 0.00 0.00 4.00
889 978 6.961554 CGACATTAAGAACTTTTCATACTGGC 59.038 38.462 0.00 0.00 0.00 4.85
890 979 6.842163 ACATTAAGAACTTTTCATACTGGCG 58.158 36.000 0.00 0.00 0.00 5.69
891 980 5.873179 TTAAGAACTTTTCATACTGGCGG 57.127 39.130 0.00 0.00 0.00 6.13
892 981 3.695830 AGAACTTTTCATACTGGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
893 982 3.600388 AGAACTTTTCATACTGGCGGAG 58.400 45.455 0.00 0.00 0.00 4.63
894 983 3.008049 AGAACTTTTCATACTGGCGGAGT 59.992 43.478 0.00 0.00 38.88 3.85
895 984 4.222145 AGAACTTTTCATACTGGCGGAGTA 59.778 41.667 0.00 0.00 41.57 2.59
897 986 5.099042 ACTTTTCATACTGGCGGAGTATT 57.901 39.130 0.00 0.00 44.26 1.89
898 987 5.116882 ACTTTTCATACTGGCGGAGTATTC 58.883 41.667 0.00 0.00 44.26 1.75
899 988 4.746535 TTTCATACTGGCGGAGTATTCA 57.253 40.909 0.00 0.00 44.26 2.57
900 989 3.728076 TCATACTGGCGGAGTATTCAC 57.272 47.619 0.00 0.00 44.26 3.18
901 990 3.028130 TCATACTGGCGGAGTATTCACA 58.972 45.455 0.00 0.00 44.26 3.58
902 991 3.068165 TCATACTGGCGGAGTATTCACAG 59.932 47.826 0.00 0.00 44.26 3.66
903 992 1.267121 ACTGGCGGAGTATTCACAGT 58.733 50.000 0.00 0.00 30.86 3.55
904 993 1.066858 ACTGGCGGAGTATTCACAGTG 60.067 52.381 0.00 0.00 34.88 3.66
905 994 0.249120 TGGCGGAGTATTCACAGTGG 59.751 55.000 0.00 0.00 0.00 4.00
906 995 1.090052 GGCGGAGTATTCACAGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
907 996 0.108138 GCGGAGTATTCACAGTGGCT 60.108 55.000 0.00 0.00 0.00 4.75
908 997 1.136305 GCGGAGTATTCACAGTGGCTA 59.864 52.381 0.00 0.00 0.00 3.93
909 998 2.810650 CGGAGTATTCACAGTGGCTAC 58.189 52.381 0.00 3.29 0.00 3.58
910 999 2.427453 CGGAGTATTCACAGTGGCTACT 59.573 50.000 12.98 12.98 37.75 2.57
923 1012 3.046280 GCTACTGCCGACCTTGTAC 57.954 57.895 0.00 0.00 0.00 2.90
924 1013 0.801067 GCTACTGCCGACCTTGTACG 60.801 60.000 0.00 0.00 0.00 3.67
925 1014 0.806868 CTACTGCCGACCTTGTACGA 59.193 55.000 0.00 0.00 0.00 3.43
926 1015 1.404391 CTACTGCCGACCTTGTACGAT 59.596 52.381 0.00 0.00 0.00 3.73
927 1016 0.172803 ACTGCCGACCTTGTACGATC 59.827 55.000 0.00 0.00 0.00 3.69
928 1017 0.527817 CTGCCGACCTTGTACGATCC 60.528 60.000 0.00 0.00 0.00 3.36
929 1018 1.227176 GCCGACCTTGTACGATCCC 60.227 63.158 0.00 0.00 0.00 3.85
1014 1129 2.430921 GCAGCAGCAGCAAAGCAG 60.431 61.111 4.63 0.00 45.49 4.24
1033 1148 0.318762 GCCCCAGTAGAGCTAATCCG 59.681 60.000 0.00 0.00 0.00 4.18
1052 1193 1.641577 GTGGGAGTTAAGCTAGCACG 58.358 55.000 18.83 0.00 0.00 5.34
1208 1358 3.186047 GGTCGCCGTTCCATGACG 61.186 66.667 0.00 0.00 42.43 4.35
1339 1509 3.300765 GTGTCCCCGGTCACGTCT 61.301 66.667 0.00 0.00 38.78 4.18
1355 1525 1.470632 CGTCTAGGTCGTCCGAGTACT 60.471 57.143 8.49 0.00 37.64 2.73
1457 1630 4.125695 GCTACGGAGGCGACGGTT 62.126 66.667 0.00 0.00 35.23 4.44
1512 1727 4.078516 GCCGGGCGTCCAGTAACT 62.079 66.667 6.96 0.00 0.00 2.24
1513 1728 2.183555 CCGGGCGTCCAGTAACTC 59.816 66.667 6.96 0.00 0.00 3.01
1514 1729 2.183555 CGGGCGTCCAGTAACTCC 59.816 66.667 6.96 0.00 0.00 3.85
1515 1730 2.642254 CGGGCGTCCAGTAACTCCA 61.642 63.158 6.96 0.00 0.00 3.86
1516 1731 1.218316 GGGCGTCCAGTAACTCCAG 59.782 63.158 0.00 0.00 0.00 3.86
1517 1732 1.542187 GGGCGTCCAGTAACTCCAGT 61.542 60.000 0.00 0.00 0.00 4.00
1632 1902 2.601741 GCACGTACATCTACTCCTACGC 60.602 54.545 0.00 0.00 36.31 4.42
1638 1908 0.105593 ATCTACTCCTACGCCGACGA 59.894 55.000 0.00 0.00 43.93 4.20
1885 2176 0.968901 TCGTGCCCTACTCCGTCAAT 60.969 55.000 0.00 0.00 0.00 2.57
1962 2253 2.203070 GACGCCGCTGATCCCATT 60.203 61.111 0.00 0.00 0.00 3.16
2005 2296 0.324738 TCGAGCTCCAGTCCCTCAAT 60.325 55.000 8.47 0.00 0.00 2.57
2505 2830 3.782889 ATGAAAGCGGAAAATGCTACC 57.217 42.857 0.00 0.00 43.14 3.18
2506 2831 1.466950 TGAAAGCGGAAAATGCTACCG 59.533 47.619 0.00 0.00 43.14 4.02
2507 2832 0.808755 AAAGCGGAAAATGCTACCGG 59.191 50.000 0.00 0.00 43.14 5.28
2508 2833 0.035820 AAGCGGAAAATGCTACCGGA 60.036 50.000 9.46 0.00 43.14 5.14
2509 2834 0.743345 AGCGGAAAATGCTACCGGAC 60.743 55.000 9.46 0.00 45.66 4.79
2510 2835 1.712018 GCGGAAAATGCTACCGGACC 61.712 60.000 9.46 0.00 45.66 4.46
2511 2836 1.093496 CGGAAAATGCTACCGGACCC 61.093 60.000 9.46 0.00 42.48 4.46
2512 2837 0.255033 GGAAAATGCTACCGGACCCT 59.745 55.000 9.46 0.00 0.00 4.34
2513 2838 1.340697 GGAAAATGCTACCGGACCCTT 60.341 52.381 9.46 0.00 0.00 3.95
2514 2839 2.092807 GGAAAATGCTACCGGACCCTTA 60.093 50.000 9.46 0.00 0.00 2.69
2515 2840 3.613030 GAAAATGCTACCGGACCCTTAA 58.387 45.455 9.46 0.00 0.00 1.85
2516 2841 3.945640 AAATGCTACCGGACCCTTAAT 57.054 42.857 9.46 0.00 0.00 1.40
2517 2842 3.487120 AATGCTACCGGACCCTTAATC 57.513 47.619 9.46 0.00 0.00 1.75
2518 2843 2.170012 TGCTACCGGACCCTTAATCT 57.830 50.000 9.46 0.00 0.00 2.40
2519 2844 2.474112 TGCTACCGGACCCTTAATCTT 58.526 47.619 9.46 0.00 0.00 2.40
2520 2845 2.841881 TGCTACCGGACCCTTAATCTTT 59.158 45.455 9.46 0.00 0.00 2.52
2521 2846 3.264964 TGCTACCGGACCCTTAATCTTTT 59.735 43.478 9.46 0.00 0.00 2.27
2522 2847 4.263594 TGCTACCGGACCCTTAATCTTTTT 60.264 41.667 9.46 0.00 0.00 1.94
2546 2871 2.773993 TTTGAGTTGATACCGGACCC 57.226 50.000 9.46 0.00 0.00 4.46
2547 2872 1.946984 TTGAGTTGATACCGGACCCT 58.053 50.000 9.46 0.00 0.00 4.34
2548 2873 1.946984 TGAGTTGATACCGGACCCTT 58.053 50.000 9.46 0.00 0.00 3.95
2549 2874 3.104519 TGAGTTGATACCGGACCCTTA 57.895 47.619 9.46 0.00 0.00 2.69
2550 2875 3.443052 TGAGTTGATACCGGACCCTTAA 58.557 45.455 9.46 0.00 0.00 1.85
2551 2876 4.035112 TGAGTTGATACCGGACCCTTAAT 58.965 43.478 9.46 0.00 0.00 1.40
2552 2877 4.100498 TGAGTTGATACCGGACCCTTAATC 59.900 45.833 9.46 0.00 0.00 1.75
2553 2878 3.069158 AGTTGATACCGGACCCTTAATCG 59.931 47.826 9.46 0.00 0.00 3.34
2554 2879 2.948115 TGATACCGGACCCTTAATCGA 58.052 47.619 9.46 0.00 0.00 3.59
2555 2880 2.889045 TGATACCGGACCCTTAATCGAG 59.111 50.000 9.46 0.00 0.00 4.04
2556 2881 2.442236 TACCGGACCCTTAATCGAGT 57.558 50.000 9.46 0.00 0.00 4.18
2557 2882 0.822164 ACCGGACCCTTAATCGAGTG 59.178 55.000 9.46 0.00 0.00 3.51
2558 2883 0.529992 CCGGACCCTTAATCGAGTGC 60.530 60.000 0.00 0.00 0.00 4.40
2559 2884 0.460311 CGGACCCTTAATCGAGTGCT 59.540 55.000 0.00 0.00 0.00 4.40
2560 2885 1.536284 CGGACCCTTAATCGAGTGCTC 60.536 57.143 0.00 0.00 0.00 4.26
2561 2886 1.480954 GGACCCTTAATCGAGTGCTCA 59.519 52.381 0.00 0.00 0.00 4.26
2562 2887 2.093658 GGACCCTTAATCGAGTGCTCAA 60.094 50.000 0.00 0.00 0.00 3.02
2563 2888 3.596214 GACCCTTAATCGAGTGCTCAAA 58.404 45.455 0.00 0.00 0.00 2.69
2564 2889 4.000988 GACCCTTAATCGAGTGCTCAAAA 58.999 43.478 0.00 0.00 0.00 2.44
2565 2890 4.589908 ACCCTTAATCGAGTGCTCAAAAT 58.410 39.130 0.00 0.00 0.00 1.82
2566 2891 5.010282 ACCCTTAATCGAGTGCTCAAAATT 58.990 37.500 0.00 0.00 0.00 1.82
2567 2892 5.106157 ACCCTTAATCGAGTGCTCAAAATTG 60.106 40.000 0.00 0.00 0.00 2.32
2568 2893 5.335127 CCTTAATCGAGTGCTCAAAATTGG 58.665 41.667 0.00 0.00 0.00 3.16
2569 2894 5.106157 CCTTAATCGAGTGCTCAAAATTGGT 60.106 40.000 0.00 0.00 0.00 3.67
2570 2895 3.837213 ATCGAGTGCTCAAAATTGGTG 57.163 42.857 0.00 0.00 0.00 4.17
2571 2896 1.266718 TCGAGTGCTCAAAATTGGTGC 59.733 47.619 0.00 0.09 0.00 5.01
2572 2897 1.666888 CGAGTGCTCAAAATTGGTGCC 60.667 52.381 0.00 0.00 0.00 5.01
2573 2898 0.681175 AGTGCTCAAAATTGGTGCCC 59.319 50.000 8.66 0.00 0.00 5.36
2574 2899 0.392336 GTGCTCAAAATTGGTGCCCA 59.608 50.000 8.66 0.00 0.00 5.36
2575 2900 0.680618 TGCTCAAAATTGGTGCCCAG 59.319 50.000 8.66 0.00 33.81 4.45
2576 2901 0.968405 GCTCAAAATTGGTGCCCAGA 59.032 50.000 0.00 0.00 33.81 3.86
2577 2902 1.344114 GCTCAAAATTGGTGCCCAGAA 59.656 47.619 0.00 0.00 33.81 3.02
2578 2903 2.027837 GCTCAAAATTGGTGCCCAGAAT 60.028 45.455 0.00 0.00 33.81 2.40
2579 2904 3.195396 GCTCAAAATTGGTGCCCAGAATA 59.805 43.478 0.00 0.00 33.81 1.75
2580 2905 4.322650 GCTCAAAATTGGTGCCCAGAATAA 60.323 41.667 0.00 0.00 33.81 1.40
2581 2906 5.146010 TCAAAATTGGTGCCCAGAATAAC 57.854 39.130 0.00 0.00 33.81 1.89
2582 2907 3.866883 AAATTGGTGCCCAGAATAACG 57.133 42.857 0.00 0.00 33.81 3.18
2583 2908 2.799126 ATTGGTGCCCAGAATAACGA 57.201 45.000 0.00 0.00 33.81 3.85
2584 2909 2.570415 TTGGTGCCCAGAATAACGAA 57.430 45.000 0.00 0.00 33.81 3.85
2585 2910 2.570415 TGGTGCCCAGAATAACGAAA 57.430 45.000 0.00 0.00 0.00 3.46
2586 2911 2.865079 TGGTGCCCAGAATAACGAAAA 58.135 42.857 0.00 0.00 0.00 2.29
2587 2912 3.426615 TGGTGCCCAGAATAACGAAAAT 58.573 40.909 0.00 0.00 0.00 1.82
2588 2913 3.192422 TGGTGCCCAGAATAACGAAAATG 59.808 43.478 0.00 0.00 0.00 2.32
2589 2914 3.179048 GTGCCCAGAATAACGAAAATGC 58.821 45.455 0.00 0.00 0.00 3.56
2590 2915 3.088532 TGCCCAGAATAACGAAAATGCT 58.911 40.909 0.00 0.00 0.00 3.79
2591 2916 4.095782 GTGCCCAGAATAACGAAAATGCTA 59.904 41.667 0.00 0.00 0.00 3.49
2592 2917 4.095782 TGCCCAGAATAACGAAAATGCTAC 59.904 41.667 0.00 0.00 0.00 3.58
2593 2918 4.785341 GCCCAGAATAACGAAAATGCTACG 60.785 45.833 0.00 0.00 0.00 3.51
2594 2919 4.260620 CCCAGAATAACGAAAATGCTACGG 60.261 45.833 0.00 0.00 0.00 4.02
2595 2920 4.271687 CAGAATAACGAAAATGCTACGGC 58.728 43.478 0.00 0.00 39.26 5.68
2596 2921 4.034048 CAGAATAACGAAAATGCTACGGCT 59.966 41.667 0.00 0.00 39.59 5.52
2597 2922 5.233476 CAGAATAACGAAAATGCTACGGCTA 59.767 40.000 0.00 0.00 39.59 3.93
2598 2923 5.813672 AGAATAACGAAAATGCTACGGCTAA 59.186 36.000 0.00 0.00 39.59 3.09
2599 2924 6.314400 AGAATAACGAAAATGCTACGGCTAAA 59.686 34.615 0.00 0.00 39.59 1.85
2600 2925 4.336532 AACGAAAATGCTACGGCTAAAG 57.663 40.909 0.00 0.00 39.59 1.85
2601 2926 3.332034 ACGAAAATGCTACGGCTAAAGT 58.668 40.909 0.00 0.00 39.59 2.66
2602 2927 3.749609 ACGAAAATGCTACGGCTAAAGTT 59.250 39.130 0.00 0.00 39.59 2.66
2603 2928 4.931002 ACGAAAATGCTACGGCTAAAGTTA 59.069 37.500 0.00 0.00 39.59 2.24
2604 2929 5.163923 ACGAAAATGCTACGGCTAAAGTTAC 60.164 40.000 0.00 0.00 39.59 2.50
2605 2930 4.852609 AAATGCTACGGCTAAAGTTACG 57.147 40.909 0.00 0.00 39.59 3.18
2606 2931 3.515330 ATGCTACGGCTAAAGTTACGT 57.485 42.857 0.00 0.00 42.71 3.57
2607 2932 3.302365 TGCTACGGCTAAAGTTACGTT 57.698 42.857 0.00 0.00 40.38 3.99
2608 2933 3.652274 TGCTACGGCTAAAGTTACGTTT 58.348 40.909 0.00 0.00 40.38 3.60
2609 2934 3.674753 TGCTACGGCTAAAGTTACGTTTC 59.325 43.478 0.00 0.00 40.38 2.78
2610 2935 3.922850 GCTACGGCTAAAGTTACGTTTCT 59.077 43.478 0.00 0.00 40.38 2.52
2611 2936 4.031089 GCTACGGCTAAAGTTACGTTTCTC 59.969 45.833 0.00 0.00 40.38 2.87
2612 2937 3.320626 ACGGCTAAAGTTACGTTTCTCC 58.679 45.455 0.00 0.00 35.90 3.71
2613 2938 3.006217 ACGGCTAAAGTTACGTTTCTCCT 59.994 43.478 0.00 0.00 35.90 3.69
2614 2939 3.611549 CGGCTAAAGTTACGTTTCTCCTC 59.388 47.826 0.00 0.00 0.00 3.71
2615 2940 4.617762 CGGCTAAAGTTACGTTTCTCCTCT 60.618 45.833 0.00 0.00 0.00 3.69
2616 2941 5.236282 GGCTAAAGTTACGTTTCTCCTCTT 58.764 41.667 0.00 0.00 0.00 2.85
2617 2942 6.393171 GGCTAAAGTTACGTTTCTCCTCTTA 58.607 40.000 0.00 0.00 0.00 2.10
2618 2943 7.040494 GGCTAAAGTTACGTTTCTCCTCTTAT 58.960 38.462 0.00 0.00 0.00 1.73
2619 2944 7.548427 GGCTAAAGTTACGTTTCTCCTCTTATT 59.452 37.037 0.00 0.00 0.00 1.40
2620 2945 9.578439 GCTAAAGTTACGTTTCTCCTCTTATTA 57.422 33.333 0.00 0.00 0.00 0.98
2622 2947 8.999220 AAAGTTACGTTTCTCCTCTTATTAGG 57.001 34.615 0.00 0.00 38.06 2.69
2623 2948 7.715266 AGTTACGTTTCTCCTCTTATTAGGT 57.285 36.000 0.00 0.00 37.91 3.08
2624 2949 8.814038 AGTTACGTTTCTCCTCTTATTAGGTA 57.186 34.615 0.00 0.00 37.91 3.08
2625 2950 9.247861 AGTTACGTTTCTCCTCTTATTAGGTAA 57.752 33.333 0.00 0.00 37.91 2.85
2626 2951 9.295214 GTTACGTTTCTCCTCTTATTAGGTAAC 57.705 37.037 0.00 0.00 37.91 2.50
2627 2952 6.871844 ACGTTTCTCCTCTTATTAGGTAACC 58.128 40.000 0.00 0.00 37.91 2.85
2628 2953 6.666980 ACGTTTCTCCTCTTATTAGGTAACCT 59.333 38.462 0.00 0.00 37.91 3.50
2629 2954 7.179872 ACGTTTCTCCTCTTATTAGGTAACCTT 59.820 37.037 0.00 0.00 37.91 3.50
2630 2955 7.705752 CGTTTCTCCTCTTATTAGGTAACCTTC 59.294 40.741 0.00 0.00 37.91 3.46
2631 2956 7.672122 TTCTCCTCTTATTAGGTAACCTTCC 57.328 40.000 0.00 0.00 37.91 3.46
2632 2957 6.994582 TCTCCTCTTATTAGGTAACCTTCCT 58.005 40.000 0.00 0.00 37.91 3.36
2633 2958 8.122646 TCTCCTCTTATTAGGTAACCTTCCTA 57.877 38.462 0.00 0.00 37.91 2.94
2634 2959 8.572221 TCTCCTCTTATTAGGTAACCTTCCTAA 58.428 37.037 6.84 6.84 46.95 2.69
2635 2960 8.544687 TCCTCTTATTAGGTAACCTTCCTAAC 57.455 38.462 6.58 0.00 46.14 2.34
2636 2961 8.124430 TCCTCTTATTAGGTAACCTTCCTAACA 58.876 37.037 6.58 0.00 46.14 2.41
2637 2962 8.765517 CCTCTTATTAGGTAACCTTCCTAACAA 58.234 37.037 6.58 1.82 46.14 2.83
2639 2964 9.948964 TCTTATTAGGTAACCTTCCTAACAAAC 57.051 33.333 6.58 0.00 46.14 2.93
2675 3000 6.748658 ACACAGATGACATGCATTTTATTTCG 59.251 34.615 0.00 0.00 37.34 3.46
2689 3017 8.592155 GCATTTTATTTCGTCCCTATTTTGAAC 58.408 33.333 0.00 0.00 0.00 3.18
2694 3022 5.789710 TTCGTCCCTATTTTGAACGATTC 57.210 39.130 0.00 0.00 0.00 2.52
2727 3055 8.256611 TCAAACGAAATGTCCATTTTTGAAAA 57.743 26.923 12.52 0.00 40.77 2.29
2897 3234 7.444558 TTGACTGTTTCGCTAATTTCAAAAC 57.555 32.000 0.00 0.00 0.00 2.43
3196 3736 5.912955 AGGTTTCGCTCGTTTCAAAAATTAG 59.087 36.000 0.00 0.00 0.00 1.73
3206 3766 8.708075 TCGTTTCAAAAATTAGATTTCACTCG 57.292 30.769 0.00 0.00 0.00 4.18
3344 5373 6.966534 AATGGTCTCACTGAATTCAAAACT 57.033 33.333 9.88 0.00 0.00 2.66
3431 5460 5.299279 TCCAGAAAACTGGTTTCACTCAATC 59.701 40.000 19.44 0.46 46.98 2.67
3442 5471 5.451381 GGTTTCACTCAATCCGAAAAACCTT 60.451 40.000 6.81 0.00 37.56 3.50
3521 5620 6.588719 TGTTTGAAATGTATTCAAGAGGGG 57.411 37.500 4.09 0.00 39.30 4.79
3529 5628 5.779241 TGTATTCAAGAGGGGTCTCATTT 57.221 39.130 0.00 0.00 42.34 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.016170 AGGCCACTTGGAAAATTTGTAGTAATT 59.984 33.333 5.01 0.00 37.39 1.40
47 48 1.117994 TTTGATTGCTTGGTGCCACA 58.882 45.000 0.00 0.00 42.00 4.17
71 72 2.164624 CACTCGAGTGGTAAGAAGAGGG 59.835 54.545 33.36 6.97 42.10 4.30
148 151 8.936864 CAAAGAAAAGGACGATGAGTAATTAGT 58.063 33.333 0.00 0.00 0.00 2.24
167 170 7.041107 GGTAGCCATTAATTCATGCAAAGAAA 58.959 34.615 8.74 0.00 0.00 2.52
170 173 6.152932 AGGTAGCCATTAATTCATGCAAAG 57.847 37.500 0.00 0.00 0.00 2.77
173 176 6.154192 TGAAAAGGTAGCCATTAATTCATGCA 59.846 34.615 0.00 0.00 0.00 3.96
177 180 7.468084 GCGTATGAAAAGGTAGCCATTAATTCA 60.468 37.037 0.00 0.00 0.00 2.57
247 264 2.496070 AGAGGAAGTATTGCGCACTACA 59.504 45.455 31.51 11.19 43.33 2.74
262 279 9.087871 TGAATCATTTATTTTGGAACAGAGGAA 57.912 29.630 0.00 0.00 42.39 3.36
263 280 8.648698 TGAATCATTTATTTTGGAACAGAGGA 57.351 30.769 0.00 0.00 42.39 3.71
264 281 9.143631 GTTGAATCATTTATTTTGGAACAGAGG 57.856 33.333 0.00 0.00 42.39 3.69
265 282 9.918630 AGTTGAATCATTTATTTTGGAACAGAG 57.081 29.630 0.00 0.00 42.39 3.35
271 288 9.487790 GGACAAAGTTGAATCATTTATTTTGGA 57.512 29.630 0.00 0.00 0.00 3.53
272 289 9.492973 AGGACAAAGTTGAATCATTTATTTTGG 57.507 29.630 0.00 0.00 0.00 3.28
281 298 9.574516 ACTAACTTTAGGACAAAGTTGAATCAT 57.425 29.630 20.03 0.90 46.41 2.45
282 299 8.974060 ACTAACTTTAGGACAAAGTTGAATCA 57.026 30.769 20.03 4.38 46.41 2.57
294 311 8.883954 ACTCAACTTTGTACTAACTTTAGGAC 57.116 34.615 4.60 4.60 43.49 3.85
295 312 8.698210 TGACTCAACTTTGTACTAACTTTAGGA 58.302 33.333 0.00 0.00 35.08 2.94
296 313 8.882415 TGACTCAACTTTGTACTAACTTTAGG 57.118 34.615 0.00 0.00 35.08 2.69
304 321 9.569167 CGAAATAGATGACTCAACTTTGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
305 322 7.545965 CCGAAATAGATGACTCAACTTTGTACT 59.454 37.037 0.00 0.00 0.00 2.73
306 323 7.544566 TCCGAAATAGATGACTCAACTTTGTAC 59.455 37.037 0.00 0.00 0.00 2.90
307 324 7.608153 TCCGAAATAGATGACTCAACTTTGTA 58.392 34.615 0.00 0.00 0.00 2.41
308 325 6.464222 TCCGAAATAGATGACTCAACTTTGT 58.536 36.000 0.00 0.00 0.00 2.83
309 326 6.968131 TCCGAAATAGATGACTCAACTTTG 57.032 37.500 0.00 0.00 0.00 2.77
310 327 6.090898 CGTTCCGAAATAGATGACTCAACTTT 59.909 38.462 0.00 0.00 0.00 2.66
311 328 5.577164 CGTTCCGAAATAGATGACTCAACTT 59.423 40.000 0.00 0.00 0.00 2.66
312 329 5.103000 CGTTCCGAAATAGATGACTCAACT 58.897 41.667 0.00 0.00 0.00 3.16
313 330 4.267928 CCGTTCCGAAATAGATGACTCAAC 59.732 45.833 0.00 0.00 0.00 3.18
314 331 4.158949 TCCGTTCCGAAATAGATGACTCAA 59.841 41.667 0.00 0.00 0.00 3.02
315 332 3.697542 TCCGTTCCGAAATAGATGACTCA 59.302 43.478 0.00 0.00 0.00 3.41
316 333 4.291783 CTCCGTTCCGAAATAGATGACTC 58.708 47.826 0.00 0.00 0.00 3.36
317 334 3.068307 CCTCCGTTCCGAAATAGATGACT 59.932 47.826 0.00 0.00 0.00 3.41
318 335 3.381949 CCTCCGTTCCGAAATAGATGAC 58.618 50.000 0.00 0.00 0.00 3.06
319 336 2.364324 CCCTCCGTTCCGAAATAGATGA 59.636 50.000 0.00 0.00 0.00 2.92
320 337 2.364324 TCCCTCCGTTCCGAAATAGATG 59.636 50.000 0.00 0.00 0.00 2.90
321 338 2.628657 CTCCCTCCGTTCCGAAATAGAT 59.371 50.000 0.00 0.00 0.00 1.98
322 339 2.029623 CTCCCTCCGTTCCGAAATAGA 58.970 52.381 0.00 0.00 0.00 1.98
323 340 1.755380 ACTCCCTCCGTTCCGAAATAG 59.245 52.381 0.00 0.00 0.00 1.73
324 341 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
325 342 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
326 343 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
327 344 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
328 345 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
329 346 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
330 347 4.684484 AATTATGTACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
331 348 5.069516 TGGTAATTATGTACTCCCTCCGTTC 59.930 44.000 0.00 0.00 0.00 3.95
332 349 4.964262 TGGTAATTATGTACTCCCTCCGTT 59.036 41.667 0.00 0.00 0.00 4.44
333 350 4.549668 TGGTAATTATGTACTCCCTCCGT 58.450 43.478 0.00 0.00 0.00 4.69
334 351 5.621555 CGATGGTAATTATGTACTCCCTCCG 60.622 48.000 0.00 0.00 0.00 4.63
335 352 5.479375 TCGATGGTAATTATGTACTCCCTCC 59.521 44.000 0.00 0.00 0.00 4.30
336 353 6.208994 ACTCGATGGTAATTATGTACTCCCTC 59.791 42.308 0.00 0.00 0.00 4.30
337 354 6.075984 ACTCGATGGTAATTATGTACTCCCT 58.924 40.000 0.00 0.00 0.00 4.20
338 355 6.208994 AGACTCGATGGTAATTATGTACTCCC 59.791 42.308 0.00 0.00 0.00 4.30
339 356 7.085116 CAGACTCGATGGTAATTATGTACTCC 58.915 42.308 0.00 0.00 0.00 3.85
340 357 7.649973 ACAGACTCGATGGTAATTATGTACTC 58.350 38.462 0.00 0.00 0.00 2.59
341 358 7.502895 AGACAGACTCGATGGTAATTATGTACT 59.497 37.037 0.00 0.00 0.00 2.73
342 359 7.649973 AGACAGACTCGATGGTAATTATGTAC 58.350 38.462 0.00 0.00 0.00 2.90
343 360 7.818997 AGACAGACTCGATGGTAATTATGTA 57.181 36.000 0.00 0.00 0.00 2.29
344 361 6.716934 AGACAGACTCGATGGTAATTATGT 57.283 37.500 0.00 0.00 0.00 2.29
345 362 8.100508 TCTAGACAGACTCGATGGTAATTATG 57.899 38.462 0.00 0.00 0.00 1.90
346 363 8.569641 GTTCTAGACAGACTCGATGGTAATTAT 58.430 37.037 0.00 0.00 0.00 1.28
374 391 9.706691 GTGCAGTAACTAAGGCATATCTAAATA 57.293 33.333 0.00 0.00 38.68 1.40
375 392 8.210946 TGTGCAGTAACTAAGGCATATCTAAAT 58.789 33.333 0.00 0.00 38.68 1.40
377 394 7.119709 TGTGCAGTAACTAAGGCATATCTAA 57.880 36.000 0.00 0.00 38.68 2.10
378 395 6.724893 TGTGCAGTAACTAAGGCATATCTA 57.275 37.500 0.00 0.00 38.68 1.98
379 396 5.614324 TGTGCAGTAACTAAGGCATATCT 57.386 39.130 0.00 0.00 38.68 1.98
380 397 6.473397 GATGTGCAGTAACTAAGGCATATC 57.527 41.667 6.48 6.48 43.90 1.63
382 399 5.614324 AGATGTGCAGTAACTAAGGCATA 57.386 39.130 0.00 0.00 38.68 3.14
383 400 4.494091 AGATGTGCAGTAACTAAGGCAT 57.506 40.909 0.00 0.00 38.68 4.40
384 401 3.981071 AGATGTGCAGTAACTAAGGCA 57.019 42.857 0.00 0.00 0.00 4.75
385 402 6.538742 TCAATTAGATGTGCAGTAACTAAGGC 59.461 38.462 0.00 0.00 0.00 4.35
386 403 7.766278 AGTCAATTAGATGTGCAGTAACTAAGG 59.234 37.037 0.00 0.00 0.00 2.69
387 404 8.709386 AGTCAATTAGATGTGCAGTAACTAAG 57.291 34.615 0.00 0.00 0.00 2.18
391 408 9.708222 CATTAAGTCAATTAGATGTGCAGTAAC 57.292 33.333 0.00 0.00 0.00 2.50
395 412 6.788243 TGCATTAAGTCAATTAGATGTGCAG 58.212 36.000 0.00 0.00 0.00 4.41
482 550 8.236585 TGCCATAAATATTGCACATCTAAGTT 57.763 30.769 0.00 0.00 30.49 2.66
499 567 9.531942 CTGAAGCACATTTAAATATGCCATAAA 57.468 29.630 24.17 8.30 39.58 1.40
500 568 7.652909 GCTGAAGCACATTTAAATATGCCATAA 59.347 33.333 24.17 9.17 39.58 1.90
519 587 7.274250 CCTTGTCATAATAAGTTTTGCTGAAGC 59.726 37.037 0.00 0.00 42.50 3.86
520 588 7.274250 GCCTTGTCATAATAAGTTTTGCTGAAG 59.726 37.037 0.00 0.00 0.00 3.02
521 589 7.039784 AGCCTTGTCATAATAAGTTTTGCTGAA 60.040 33.333 0.00 0.00 0.00 3.02
522 590 6.434028 AGCCTTGTCATAATAAGTTTTGCTGA 59.566 34.615 0.00 0.00 0.00 4.26
523 591 6.529125 CAGCCTTGTCATAATAAGTTTTGCTG 59.471 38.462 0.00 0.00 32.92 4.41
526 594 6.924111 ACCAGCCTTGTCATAATAAGTTTTG 58.076 36.000 0.00 0.00 0.00 2.44
533 601 6.545666 CCATTACAACCAGCCTTGTCATAATA 59.454 38.462 0.00 0.00 35.87 0.98
538 606 2.158534 ACCATTACAACCAGCCTTGTCA 60.159 45.455 0.00 0.00 35.87 3.58
541 609 3.686016 ACTACCATTACAACCAGCCTTG 58.314 45.455 0.00 0.00 0.00 3.61
542 610 5.710409 ATACTACCATTACAACCAGCCTT 57.290 39.130 0.00 0.00 0.00 4.35
543 611 5.710409 AATACTACCATTACAACCAGCCT 57.290 39.130 0.00 0.00 0.00 4.58
544 612 7.333672 GCTATAATACTACCATTACAACCAGCC 59.666 40.741 0.00 0.00 0.00 4.85
545 613 8.095169 AGCTATAATACTACCATTACAACCAGC 58.905 37.037 0.00 0.00 0.00 4.85
560 628 9.988815 GGCATGCATTATACTAGCTATAATACT 57.011 33.333 21.36 0.00 36.31 2.12
561 629 9.764363 TGGCATGCATTATACTAGCTATAATAC 57.236 33.333 21.36 10.21 36.31 1.89
563 631 9.113838 GTTGGCATGCATTATACTAGCTATAAT 57.886 33.333 21.36 9.78 38.20 1.28
564 632 8.321353 AGTTGGCATGCATTATACTAGCTATAA 58.679 33.333 21.36 0.00 32.80 0.98
565 633 7.851228 AGTTGGCATGCATTATACTAGCTATA 58.149 34.615 21.36 0.00 0.00 1.31
566 634 6.715280 AGTTGGCATGCATTATACTAGCTAT 58.285 36.000 21.36 0.00 0.00 2.97
567 635 6.114187 AGTTGGCATGCATTATACTAGCTA 57.886 37.500 21.36 0.00 0.00 3.32
568 636 4.978099 AGTTGGCATGCATTATACTAGCT 58.022 39.130 21.36 0.00 0.00 3.32
569 637 5.352569 CCTAGTTGGCATGCATTATACTAGC 59.647 44.000 21.36 10.48 34.82 3.42
570 638 6.974932 CCTAGTTGGCATGCATTATACTAG 57.025 41.667 21.36 22.50 35.53 2.57
585 653 4.463891 ACCTCATCAAAATTGCCTAGTTGG 59.536 41.667 0.00 0.00 39.35 3.77
586 654 5.047802 ACACCTCATCAAAATTGCCTAGTTG 60.048 40.000 0.00 0.00 0.00 3.16
587 655 5.079643 ACACCTCATCAAAATTGCCTAGTT 58.920 37.500 0.00 0.00 0.00 2.24
588 656 4.666512 ACACCTCATCAAAATTGCCTAGT 58.333 39.130 0.00 0.00 0.00 2.57
589 657 4.701651 TGACACCTCATCAAAATTGCCTAG 59.298 41.667 0.00 0.00 0.00 3.02
590 658 4.661222 TGACACCTCATCAAAATTGCCTA 58.339 39.130 0.00 0.00 0.00 3.93
591 659 3.499338 TGACACCTCATCAAAATTGCCT 58.501 40.909 0.00 0.00 0.00 4.75
592 660 3.940209 TGACACCTCATCAAAATTGCC 57.060 42.857 0.00 0.00 0.00 4.52
593 661 5.039333 GCTATGACACCTCATCAAAATTGC 58.961 41.667 0.00 0.00 38.21 3.56
594 662 6.198650 TGCTATGACACCTCATCAAAATTG 57.801 37.500 0.00 0.00 38.21 2.32
595 663 7.414222 AATGCTATGACACCTCATCAAAATT 57.586 32.000 0.00 0.00 38.21 1.82
596 664 8.523915 TTAATGCTATGACACCTCATCAAAAT 57.476 30.769 0.00 0.00 38.21 1.82
597 665 7.936496 TTAATGCTATGACACCTCATCAAAA 57.064 32.000 0.00 0.00 38.21 2.44
598 666 7.936496 TTTAATGCTATGACACCTCATCAAA 57.064 32.000 0.00 0.00 38.21 2.69
599 667 7.774625 TCATTTAATGCTATGACACCTCATCAA 59.225 33.333 0.00 0.00 38.21 2.57
600 668 7.281841 TCATTTAATGCTATGACACCTCATCA 58.718 34.615 0.00 0.00 38.21 3.07
601 669 7.734924 TCATTTAATGCTATGACACCTCATC 57.265 36.000 0.00 0.00 38.21 2.92
602 670 7.994911 TCTTCATTTAATGCTATGACACCTCAT 59.005 33.333 0.00 0.00 40.47 2.90
603 671 7.337938 TCTTCATTTAATGCTATGACACCTCA 58.662 34.615 0.00 0.00 30.89 3.86
604 672 7.792374 TCTTCATTTAATGCTATGACACCTC 57.208 36.000 0.00 0.00 30.89 3.85
605 673 8.579850 TTTCTTCATTTAATGCTATGACACCT 57.420 30.769 0.00 0.00 30.89 4.00
606 674 8.677300 TCTTTCTTCATTTAATGCTATGACACC 58.323 33.333 0.00 0.00 30.89 4.16
607 675 9.713740 CTCTTTCTTCATTTAATGCTATGACAC 57.286 33.333 0.00 0.00 30.89 3.67
608 676 9.671279 TCTCTTTCTTCATTTAATGCTATGACA 57.329 29.630 0.00 0.00 30.89 3.58
610 678 9.334947 CCTCTCTTTCTTCATTTAATGCTATGA 57.665 33.333 0.00 0.00 0.00 2.15
611 679 8.566260 CCCTCTCTTTCTTCATTTAATGCTATG 58.434 37.037 0.00 0.00 0.00 2.23
612 680 8.277918 ACCCTCTCTTTCTTCATTTAATGCTAT 58.722 33.333 0.00 0.00 0.00 2.97
613 681 7.554118 CACCCTCTCTTTCTTCATTTAATGCTA 59.446 37.037 0.00 0.00 0.00 3.49
614 682 6.376581 CACCCTCTCTTTCTTCATTTAATGCT 59.623 38.462 0.00 0.00 0.00 3.79
615 683 6.151817 ACACCCTCTCTTTCTTCATTTAATGC 59.848 38.462 0.00 0.00 0.00 3.56
616 684 7.693969 ACACCCTCTCTTTCTTCATTTAATG 57.306 36.000 0.00 0.00 0.00 1.90
617 685 9.981460 ATTACACCCTCTCTTTCTTCATTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
620 688 9.620259 GATATTACACCCTCTCTTTCTTCATTT 57.380 33.333 0.00 0.00 0.00 2.32
621 689 8.772250 TGATATTACACCCTCTCTTTCTTCATT 58.228 33.333 0.00 0.00 0.00 2.57
622 690 8.324191 TGATATTACACCCTCTCTTTCTTCAT 57.676 34.615 0.00 0.00 0.00 2.57
623 691 7.733773 TGATATTACACCCTCTCTTTCTTCA 57.266 36.000 0.00 0.00 0.00 3.02
626 694 9.607333 TGATATGATATTACACCCTCTCTTTCT 57.393 33.333 0.00 0.00 0.00 2.52
629 697 9.552695 TCATGATATGATATTACACCCTCTCTT 57.447 33.333 0.00 0.00 33.59 2.85
669 737 8.128582 GCATAACACAAAGTAGCATAGCATTTA 58.871 33.333 0.00 0.00 0.00 1.40
670 738 6.974622 GCATAACACAAAGTAGCATAGCATTT 59.025 34.615 0.00 0.00 0.00 2.32
671 739 6.095300 TGCATAACACAAAGTAGCATAGCATT 59.905 34.615 0.00 0.00 30.77 3.56
672 740 5.589855 TGCATAACACAAAGTAGCATAGCAT 59.410 36.000 0.00 0.00 30.77 3.79
673 741 4.940654 TGCATAACACAAAGTAGCATAGCA 59.059 37.500 0.00 0.00 30.77 3.49
674 742 5.484173 TGCATAACACAAAGTAGCATAGC 57.516 39.130 0.00 0.00 30.77 2.97
675 743 7.128331 GTCATGCATAACACAAAGTAGCATAG 58.872 38.462 0.00 0.00 39.67 2.23
676 744 6.597280 TGTCATGCATAACACAAAGTAGCATA 59.403 34.615 0.00 0.00 39.67 3.14
677 745 5.415389 TGTCATGCATAACACAAAGTAGCAT 59.585 36.000 0.00 0.00 41.22 3.79
678 746 4.759183 TGTCATGCATAACACAAAGTAGCA 59.241 37.500 0.00 0.00 37.15 3.49
679 747 5.295431 TGTCATGCATAACACAAAGTAGC 57.705 39.130 0.00 0.00 0.00 3.58
680 748 9.838975 TTTATTGTCATGCATAACACAAAGTAG 57.161 29.630 17.36 0.00 32.66 2.57
686 754 9.394767 ACTCTATTTATTGTCATGCATAACACA 57.605 29.630 0.89 1.57 0.00 3.72
730 798 9.769677 ACTACCTTCCTAATGCATAGTATCATA 57.230 33.333 0.00 0.00 0.00 2.15
731 799 8.671987 ACTACCTTCCTAATGCATAGTATCAT 57.328 34.615 0.00 0.00 0.00 2.45
732 800 9.769677 ATACTACCTTCCTAATGCATAGTATCA 57.230 33.333 0.00 0.00 31.76 2.15
734 802 9.769677 TGATACTACCTTCCTAATGCATAGTAT 57.230 33.333 11.08 11.08 37.18 2.12
735 803 9.769677 ATGATACTACCTTCCTAATGCATAGTA 57.230 33.333 0.00 0.81 0.00 1.82
736 804 8.671987 ATGATACTACCTTCCTAATGCATAGT 57.328 34.615 0.00 0.00 0.00 2.12
738 806 9.541884 TGTATGATACTACCTTCCTAATGCATA 57.458 33.333 0.00 0.00 0.00 3.14
739 807 8.314751 GTGTATGATACTACCTTCCTAATGCAT 58.685 37.037 4.03 0.00 0.00 3.96
740 808 7.509318 AGTGTATGATACTACCTTCCTAATGCA 59.491 37.037 4.03 0.00 0.00 3.96
741 809 7.897864 AGTGTATGATACTACCTTCCTAATGC 58.102 38.462 4.03 0.00 0.00 3.56
787 855 9.122954 TGGTTGTAATGGGGAATATCATATACT 57.877 33.333 0.00 0.00 0.00 2.12
788 856 9.396022 CTGGTTGTAATGGGGAATATCATATAC 57.604 37.037 0.00 0.00 0.00 1.47
789 857 8.052748 GCTGGTTGTAATGGGGAATATCATATA 58.947 37.037 0.00 0.00 0.00 0.86
790 858 6.891908 GCTGGTTGTAATGGGGAATATCATAT 59.108 38.462 0.00 0.00 0.00 1.78
791 859 6.245408 GCTGGTTGTAATGGGGAATATCATA 58.755 40.000 0.00 0.00 0.00 2.15
792 860 5.079643 GCTGGTTGTAATGGGGAATATCAT 58.920 41.667 0.00 0.00 0.00 2.45
793 861 4.469657 GCTGGTTGTAATGGGGAATATCA 58.530 43.478 0.00 0.00 0.00 2.15
794 862 3.826729 GGCTGGTTGTAATGGGGAATATC 59.173 47.826 0.00 0.00 0.00 1.63
795 863 3.467103 AGGCTGGTTGTAATGGGGAATAT 59.533 43.478 0.00 0.00 0.00 1.28
796 864 2.856231 AGGCTGGTTGTAATGGGGAATA 59.144 45.455 0.00 0.00 0.00 1.75
797 865 1.645919 AGGCTGGTTGTAATGGGGAAT 59.354 47.619 0.00 0.00 0.00 3.01
798 866 1.080638 AGGCTGGTTGTAATGGGGAA 58.919 50.000 0.00 0.00 0.00 3.97
799 867 1.974028 TAGGCTGGTTGTAATGGGGA 58.026 50.000 0.00 0.00 0.00 4.81
800 868 2.375146 GTTAGGCTGGTTGTAATGGGG 58.625 52.381 0.00 0.00 0.00 4.96
801 869 2.014128 CGTTAGGCTGGTTGTAATGGG 58.986 52.381 0.00 0.00 0.00 4.00
802 870 1.400494 GCGTTAGGCTGGTTGTAATGG 59.600 52.381 0.00 0.00 39.11 3.16
803 871 2.080693 TGCGTTAGGCTGGTTGTAATG 58.919 47.619 0.00 0.00 44.05 1.90
804 872 2.356135 CTGCGTTAGGCTGGTTGTAAT 58.644 47.619 0.00 0.00 44.05 1.89
805 873 1.803334 CTGCGTTAGGCTGGTTGTAA 58.197 50.000 0.00 0.00 44.05 2.41
806 874 0.672401 GCTGCGTTAGGCTGGTTGTA 60.672 55.000 0.00 0.00 44.05 2.41
807 875 1.966451 GCTGCGTTAGGCTGGTTGT 60.966 57.895 0.00 0.00 44.05 3.32
808 876 1.514678 TTGCTGCGTTAGGCTGGTTG 61.515 55.000 0.00 0.00 44.05 3.77
809 877 1.228124 TTGCTGCGTTAGGCTGGTT 60.228 52.632 0.00 0.00 44.05 3.67
810 878 1.672356 CTTGCTGCGTTAGGCTGGT 60.672 57.895 0.00 0.00 44.05 4.00
811 879 3.044059 GCTTGCTGCGTTAGGCTGG 62.044 63.158 0.00 0.00 44.05 4.85
812 880 2.482374 GCTTGCTGCGTTAGGCTG 59.518 61.111 0.00 0.00 44.05 4.85
826 894 1.422531 TGGGTGCCATTTGAAAGCTT 58.577 45.000 0.00 0.00 0.00 3.74
831 899 2.307496 AGTCATGGGTGCCATTTGAA 57.693 45.000 0.00 0.00 42.23 2.69
832 900 2.170166 GAAGTCATGGGTGCCATTTGA 58.830 47.619 0.00 0.00 42.23 2.69
843 911 6.045318 GTCGGGATATGATATGAAGTCATGG 58.955 44.000 4.00 0.00 36.96 3.66
846 914 6.857437 ATGTCGGGATATGATATGAAGTCA 57.143 37.500 0.00 0.00 0.00 3.41
847 915 9.307121 CTTAATGTCGGGATATGATATGAAGTC 57.693 37.037 0.00 0.00 0.00 3.01
868 957 6.177610 TCCGCCAGTATGAAAAGTTCTTAAT 58.822 36.000 0.00 0.00 39.69 1.40
870 959 5.155278 TCCGCCAGTATGAAAAGTTCTTA 57.845 39.130 0.00 0.00 39.69 2.10
871 960 4.003648 CTCCGCCAGTATGAAAAGTTCTT 58.996 43.478 0.00 0.00 39.69 2.52
872 961 3.008049 ACTCCGCCAGTATGAAAAGTTCT 59.992 43.478 0.00 0.00 39.69 3.01
873 962 3.335579 ACTCCGCCAGTATGAAAAGTTC 58.664 45.455 0.00 0.00 39.69 3.01
874 963 3.418684 ACTCCGCCAGTATGAAAAGTT 57.581 42.857 0.00 0.00 39.69 2.66
876 965 5.006746 GTGAATACTCCGCCAGTATGAAAAG 59.993 44.000 6.14 0.00 46.18 2.27
877 966 4.873827 GTGAATACTCCGCCAGTATGAAAA 59.126 41.667 6.14 0.00 46.18 2.29
878 967 4.081365 TGTGAATACTCCGCCAGTATGAAA 60.081 41.667 6.14 0.00 46.18 2.69
879 968 3.449377 TGTGAATACTCCGCCAGTATGAA 59.551 43.478 6.14 0.00 46.18 2.57
880 969 3.028130 TGTGAATACTCCGCCAGTATGA 58.972 45.455 6.14 0.00 46.18 2.15
881 970 3.181475 ACTGTGAATACTCCGCCAGTATG 60.181 47.826 6.14 0.00 46.18 2.39
883 972 2.165641 CACTGTGAATACTCCGCCAGTA 59.834 50.000 0.32 0.00 42.09 2.74
884 973 1.066858 CACTGTGAATACTCCGCCAGT 60.067 52.381 0.32 0.00 39.41 4.00
885 974 1.645034 CACTGTGAATACTCCGCCAG 58.355 55.000 0.32 0.00 0.00 4.85
886 975 0.249120 CCACTGTGAATACTCCGCCA 59.751 55.000 9.86 0.00 0.00 5.69
887 976 1.090052 GCCACTGTGAATACTCCGCC 61.090 60.000 9.86 0.00 0.00 6.13
888 977 0.108138 AGCCACTGTGAATACTCCGC 60.108 55.000 9.86 1.23 0.00 5.54
889 978 2.427453 AGTAGCCACTGTGAATACTCCG 59.573 50.000 9.86 0.00 32.25 4.63
890 979 3.786635 CAGTAGCCACTGTGAATACTCC 58.213 50.000 9.86 0.00 46.03 3.85
905 994 0.801067 CGTACAAGGTCGGCAGTAGC 60.801 60.000 0.00 0.00 41.10 3.58
906 995 0.806868 TCGTACAAGGTCGGCAGTAG 59.193 55.000 0.00 0.00 0.00 2.57
907 996 1.402968 GATCGTACAAGGTCGGCAGTA 59.597 52.381 0.00 0.00 0.00 2.74
908 997 0.172803 GATCGTACAAGGTCGGCAGT 59.827 55.000 0.00 0.00 0.00 4.40
909 998 0.527817 GGATCGTACAAGGTCGGCAG 60.528 60.000 0.00 0.00 0.00 4.85
910 999 1.514087 GGATCGTACAAGGTCGGCA 59.486 57.895 0.00 0.00 0.00 5.69
911 1000 1.227176 GGGATCGTACAAGGTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
912 1001 0.822164 AAGGGATCGTACAAGGTCGG 59.178 55.000 0.00 0.00 0.00 4.79
913 1002 1.533338 CGAAGGGATCGTACAAGGTCG 60.533 57.143 0.00 0.00 46.52 4.79
914 1003 2.205307 CGAAGGGATCGTACAAGGTC 57.795 55.000 0.00 0.00 46.52 3.85
924 1013 1.132500 AATGGGGAGTCGAAGGGATC 58.868 55.000 0.00 0.00 0.00 3.36
925 1014 2.438392 GTTAATGGGGAGTCGAAGGGAT 59.562 50.000 0.00 0.00 0.00 3.85
926 1015 1.835531 GTTAATGGGGAGTCGAAGGGA 59.164 52.381 0.00 0.00 0.00 4.20
927 1016 1.134189 GGTTAATGGGGAGTCGAAGGG 60.134 57.143 0.00 0.00 0.00 3.95
928 1017 1.557832 TGGTTAATGGGGAGTCGAAGG 59.442 52.381 0.00 0.00 0.00 3.46
929 1018 3.560636 ATGGTTAATGGGGAGTCGAAG 57.439 47.619 0.00 0.00 0.00 3.79
934 1023 9.197306 GTAAGATTAAAATGGTTAATGGGGAGT 57.803 33.333 0.00 0.00 0.00 3.85
1014 1129 0.318762 CGGATTAGCTCTACTGGGGC 59.681 60.000 0.00 0.00 0.00 5.80
1033 1148 1.641577 CGTGCTAGCTTAACTCCCAC 58.358 55.000 17.23 0.93 0.00 4.61
1052 1193 1.595382 CCATCGTCCGAGGCATTCC 60.595 63.158 0.00 0.00 0.00 3.01
1328 1498 1.975363 GACGACCTAGACGTGACCGG 61.975 65.000 16.81 0.00 43.97 5.28
1329 1499 1.423056 GACGACCTAGACGTGACCG 59.577 63.158 16.81 0.00 43.97 4.79
1339 1509 2.768253 TCAAGTACTCGGACGACCTA 57.232 50.000 0.00 0.00 0.00 3.08
1355 1525 2.016604 GCCTATGTTCACGGCCATCAA 61.017 52.381 2.24 0.00 37.86 2.57
1509 1724 1.264295 GTAGGGGTCGAACTGGAGTT 58.736 55.000 0.00 0.00 41.64 3.01
1510 1725 0.113776 TGTAGGGGTCGAACTGGAGT 59.886 55.000 0.00 0.00 0.00 3.85
1511 1726 1.263356 TTGTAGGGGTCGAACTGGAG 58.737 55.000 0.00 0.00 0.00 3.86
1512 1727 1.719529 TTTGTAGGGGTCGAACTGGA 58.280 50.000 0.00 0.00 0.00 3.86
1513 1728 2.629051 GATTTGTAGGGGTCGAACTGG 58.371 52.381 0.00 0.00 0.00 4.00
1514 1729 2.094390 TCGATTTGTAGGGGTCGAACTG 60.094 50.000 0.00 0.00 39.80 3.16
1515 1730 2.094338 GTCGATTTGTAGGGGTCGAACT 60.094 50.000 0.00 0.00 43.65 3.01
1516 1731 2.265683 GTCGATTTGTAGGGGTCGAAC 58.734 52.381 0.00 0.00 43.65 3.95
1517 1732 1.135315 CGTCGATTTGTAGGGGTCGAA 60.135 52.381 0.00 0.00 43.65 3.71
1547 1762 0.109412 CCGGAGTTACAGTCCACGAC 60.109 60.000 0.00 0.00 37.57 4.34
1587 1802 2.746277 AGTTGGCGTCGCATTCCC 60.746 61.111 20.50 1.09 0.00 3.97
1590 1805 1.577328 CTTGGAGTTGGCGTCGCATT 61.577 55.000 20.50 0.27 0.00 3.56
1591 1806 2.031919 TTGGAGTTGGCGTCGCAT 59.968 55.556 20.50 0.97 0.00 4.73
1767 2055 4.221422 CGATGCCGTCCCCGATGT 62.221 66.667 0.00 0.00 35.63 3.06
1849 2140 1.187087 CGAGGCAGTAGGAGAACCTT 58.813 55.000 0.00 0.00 45.36 3.50
1962 2253 5.109210 CGATGTAGTATGCCTTCACTTTGA 58.891 41.667 0.00 0.00 0.00 2.69
2500 2825 3.555527 AAAGATTAAGGGTCCGGTAGC 57.444 47.619 0.00 0.00 0.00 3.58
2525 2850 3.073356 AGGGTCCGGTATCAACTCAAAAA 59.927 43.478 0.00 0.00 0.00 1.94
2526 2851 2.640826 AGGGTCCGGTATCAACTCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2527 2852 2.262637 AGGGTCCGGTATCAACTCAAA 58.737 47.619 0.00 0.00 0.00 2.69
2528 2853 1.946984 AGGGTCCGGTATCAACTCAA 58.053 50.000 0.00 0.00 0.00 3.02
2529 2854 1.946984 AAGGGTCCGGTATCAACTCA 58.053 50.000 0.00 0.00 0.00 3.41
2530 2855 4.629092 GATTAAGGGTCCGGTATCAACTC 58.371 47.826 0.00 0.00 0.00 3.01
2531 2856 3.069158 CGATTAAGGGTCCGGTATCAACT 59.931 47.826 0.00 0.00 0.00 3.16
2532 2857 3.068590 TCGATTAAGGGTCCGGTATCAAC 59.931 47.826 0.00 0.00 0.00 3.18
2533 2858 3.298619 TCGATTAAGGGTCCGGTATCAA 58.701 45.455 0.00 0.00 0.00 2.57
2534 2859 2.889045 CTCGATTAAGGGTCCGGTATCA 59.111 50.000 0.00 0.00 0.00 2.15
2535 2860 2.889678 ACTCGATTAAGGGTCCGGTATC 59.110 50.000 0.00 0.00 0.00 2.24
2536 2861 2.626743 CACTCGATTAAGGGTCCGGTAT 59.373 50.000 0.00 0.00 0.00 2.73
2537 2862 2.026641 CACTCGATTAAGGGTCCGGTA 58.973 52.381 0.00 0.00 0.00 4.02
2538 2863 0.822164 CACTCGATTAAGGGTCCGGT 59.178 55.000 0.00 0.00 0.00 5.28
2539 2864 0.529992 GCACTCGATTAAGGGTCCGG 60.530 60.000 0.00 0.00 0.00 5.14
2540 2865 0.460311 AGCACTCGATTAAGGGTCCG 59.540 55.000 0.00 0.00 0.00 4.79
2541 2866 1.480954 TGAGCACTCGATTAAGGGTCC 59.519 52.381 0.00 0.00 0.00 4.46
2542 2867 2.961526 TGAGCACTCGATTAAGGGTC 57.038 50.000 0.00 0.00 0.00 4.46
2543 2868 3.695830 TTTGAGCACTCGATTAAGGGT 57.304 42.857 0.00 0.00 0.00 4.34
2544 2869 5.335127 CAATTTTGAGCACTCGATTAAGGG 58.665 41.667 0.00 0.00 0.00 3.95
2545 2870 5.106157 ACCAATTTTGAGCACTCGATTAAGG 60.106 40.000 0.00 0.00 0.00 2.69
2546 2871 5.796935 CACCAATTTTGAGCACTCGATTAAG 59.203 40.000 0.00 0.00 0.00 1.85
2547 2872 5.698832 CACCAATTTTGAGCACTCGATTAA 58.301 37.500 0.00 0.00 0.00 1.40
2548 2873 4.379394 GCACCAATTTTGAGCACTCGATTA 60.379 41.667 0.00 0.00 0.00 1.75
2549 2874 3.612479 GCACCAATTTTGAGCACTCGATT 60.612 43.478 0.00 0.00 0.00 3.34
2550 2875 2.095059 GCACCAATTTTGAGCACTCGAT 60.095 45.455 0.00 0.00 0.00 3.59
2551 2876 1.266718 GCACCAATTTTGAGCACTCGA 59.733 47.619 0.00 0.00 0.00 4.04
2552 2877 1.666888 GGCACCAATTTTGAGCACTCG 60.667 52.381 9.00 0.00 32.92 4.18
2553 2878 2.070262 GGCACCAATTTTGAGCACTC 57.930 50.000 9.00 0.00 32.92 3.51
2568 2893 3.119495 AGCATTTTCGTTATTCTGGGCAC 60.119 43.478 0.00 0.00 0.00 5.01
2569 2894 3.088532 AGCATTTTCGTTATTCTGGGCA 58.911 40.909 0.00 0.00 0.00 5.36
2570 2895 3.782889 AGCATTTTCGTTATTCTGGGC 57.217 42.857 0.00 0.00 0.00 5.36
2571 2896 4.260620 CCGTAGCATTTTCGTTATTCTGGG 60.261 45.833 0.00 0.00 0.00 4.45
2572 2897 4.785341 GCCGTAGCATTTTCGTTATTCTGG 60.785 45.833 0.00 0.00 39.53 3.86
2573 2898 4.034048 AGCCGTAGCATTTTCGTTATTCTG 59.966 41.667 0.00 0.00 43.56 3.02
2574 2899 4.189231 AGCCGTAGCATTTTCGTTATTCT 58.811 39.130 0.00 0.00 43.56 2.40
2575 2900 4.531659 AGCCGTAGCATTTTCGTTATTC 57.468 40.909 0.00 0.00 43.56 1.75
2576 2901 6.093082 ACTTTAGCCGTAGCATTTTCGTTATT 59.907 34.615 0.00 0.00 43.56 1.40
2577 2902 5.583457 ACTTTAGCCGTAGCATTTTCGTTAT 59.417 36.000 0.00 0.00 43.56 1.89
2578 2903 4.931002 ACTTTAGCCGTAGCATTTTCGTTA 59.069 37.500 0.00 0.00 43.56 3.18
2579 2904 3.749609 ACTTTAGCCGTAGCATTTTCGTT 59.250 39.130 0.00 0.00 43.56 3.85
2580 2905 3.332034 ACTTTAGCCGTAGCATTTTCGT 58.668 40.909 0.00 0.00 43.56 3.85
2581 2906 4.336532 AACTTTAGCCGTAGCATTTTCG 57.663 40.909 0.00 0.00 43.56 3.46
2582 2907 5.163923 ACGTAACTTTAGCCGTAGCATTTTC 60.164 40.000 0.00 0.00 43.56 2.29
2583 2908 4.692155 ACGTAACTTTAGCCGTAGCATTTT 59.308 37.500 0.00 0.00 43.56 1.82
2584 2909 4.248058 ACGTAACTTTAGCCGTAGCATTT 58.752 39.130 0.00 0.00 43.56 2.32
2585 2910 3.853475 ACGTAACTTTAGCCGTAGCATT 58.147 40.909 0.00 0.00 43.56 3.56
2586 2911 3.515330 ACGTAACTTTAGCCGTAGCAT 57.485 42.857 0.00 0.00 43.56 3.79
2587 2912 3.302365 AACGTAACTTTAGCCGTAGCA 57.698 42.857 0.00 0.00 43.56 3.49
2588 2913 3.922850 AGAAACGTAACTTTAGCCGTAGC 59.077 43.478 0.00 0.00 40.32 3.58
2589 2914 4.560427 GGAGAAACGTAACTTTAGCCGTAG 59.440 45.833 0.00 0.00 32.49 3.51
2590 2915 4.218417 AGGAGAAACGTAACTTTAGCCGTA 59.782 41.667 0.00 0.00 32.49 4.02
2591 2916 3.006217 AGGAGAAACGTAACTTTAGCCGT 59.994 43.478 0.00 0.00 34.56 5.68
2592 2917 3.582780 AGGAGAAACGTAACTTTAGCCG 58.417 45.455 0.00 0.00 0.00 5.52
2593 2918 4.818642 AGAGGAGAAACGTAACTTTAGCC 58.181 43.478 0.00 0.00 0.00 3.93
2594 2919 8.476657 AATAAGAGGAGAAACGTAACTTTAGC 57.523 34.615 0.00 0.00 0.00 3.09
2597 2922 8.591940 ACCTAATAAGAGGAGAAACGTAACTTT 58.408 33.333 0.00 0.00 39.15 2.66
2598 2923 8.131847 ACCTAATAAGAGGAGAAACGTAACTT 57.868 34.615 0.00 0.00 39.15 2.66
2599 2924 7.715266 ACCTAATAAGAGGAGAAACGTAACT 57.285 36.000 0.00 0.00 39.15 2.24
2600 2925 9.295214 GTTACCTAATAAGAGGAGAAACGTAAC 57.705 37.037 0.00 0.00 39.15 2.50
2601 2926 8.470002 GGTTACCTAATAAGAGGAGAAACGTAA 58.530 37.037 0.00 0.00 39.15 3.18
2602 2927 7.836183 AGGTTACCTAATAAGAGGAGAAACGTA 59.164 37.037 0.15 0.00 39.15 3.57
2603 2928 6.666980 AGGTTACCTAATAAGAGGAGAAACGT 59.333 38.462 0.15 0.00 39.15 3.99
2604 2929 7.110043 AGGTTACCTAATAAGAGGAGAAACG 57.890 40.000 0.15 0.00 39.15 3.60
2605 2930 7.986320 GGAAGGTTACCTAATAAGAGGAGAAAC 59.014 40.741 3.55 0.00 39.15 2.78
2606 2931 7.905106 AGGAAGGTTACCTAATAAGAGGAGAAA 59.095 37.037 3.55 0.00 39.15 2.52
2607 2932 7.428335 AGGAAGGTTACCTAATAAGAGGAGAA 58.572 38.462 3.55 0.00 39.15 2.87
2608 2933 6.994582 AGGAAGGTTACCTAATAAGAGGAGA 58.005 40.000 3.55 0.00 39.15 3.71
2609 2934 8.640651 GTTAGGAAGGTTACCTAATAAGAGGAG 58.359 40.741 3.55 0.00 46.91 3.69
2610 2935 8.124430 TGTTAGGAAGGTTACCTAATAAGAGGA 58.876 37.037 3.55 0.00 46.91 3.71
2611 2936 8.315220 TGTTAGGAAGGTTACCTAATAAGAGG 57.685 38.462 3.55 0.00 46.91 3.69
2613 2938 9.948964 GTTTGTTAGGAAGGTTACCTAATAAGA 57.051 33.333 3.55 0.42 46.91 2.10
2614 2939 9.170734 GGTTTGTTAGGAAGGTTACCTAATAAG 57.829 37.037 3.55 0.00 46.91 1.73
2615 2940 8.893560 AGGTTTGTTAGGAAGGTTACCTAATAA 58.106 33.333 3.55 9.79 46.91 1.40
2616 2941 8.453498 AGGTTTGTTAGGAAGGTTACCTAATA 57.547 34.615 3.55 4.78 46.91 0.98
2617 2942 7.239143 AGAGGTTTGTTAGGAAGGTTACCTAAT 59.761 37.037 3.55 0.00 46.91 1.73
2618 2943 6.559921 AGAGGTTTGTTAGGAAGGTTACCTAA 59.440 38.462 3.55 0.00 44.50 2.69
2619 2944 6.086775 AGAGGTTTGTTAGGAAGGTTACCTA 58.913 40.000 3.55 0.00 38.76 3.08
2620 2945 4.912133 AGAGGTTTGTTAGGAAGGTTACCT 59.088 41.667 0.00 0.00 41.05 3.08
2621 2946 5.012871 AGAGAGGTTTGTTAGGAAGGTTACC 59.987 44.000 0.00 0.00 0.00 2.85
2622 2947 6.111669 AGAGAGGTTTGTTAGGAAGGTTAC 57.888 41.667 0.00 0.00 0.00 2.50
2623 2948 5.247792 GGAGAGAGGTTTGTTAGGAAGGTTA 59.752 44.000 0.00 0.00 0.00 2.85
2624 2949 4.041815 GGAGAGAGGTTTGTTAGGAAGGTT 59.958 45.833 0.00 0.00 0.00 3.50
2625 2950 3.583526 GGAGAGAGGTTTGTTAGGAAGGT 59.416 47.826 0.00 0.00 0.00 3.50
2626 2951 3.055021 GGGAGAGAGGTTTGTTAGGAAGG 60.055 52.174 0.00 0.00 0.00 3.46
2627 2952 3.055021 GGGGAGAGAGGTTTGTTAGGAAG 60.055 52.174 0.00 0.00 0.00 3.46
2628 2953 2.910977 GGGGAGAGAGGTTTGTTAGGAA 59.089 50.000 0.00 0.00 0.00 3.36
2629 2954 2.158066 TGGGGAGAGAGGTTTGTTAGGA 60.158 50.000 0.00 0.00 0.00 2.94
2630 2955 2.027100 GTGGGGAGAGAGGTTTGTTAGG 60.027 54.545 0.00 0.00 0.00 2.69
2631 2956 2.637872 TGTGGGGAGAGAGGTTTGTTAG 59.362 50.000 0.00 0.00 0.00 2.34
2632 2957 2.370849 GTGTGGGGAGAGAGGTTTGTTA 59.629 50.000 0.00 0.00 0.00 2.41
2633 2958 1.143073 GTGTGGGGAGAGAGGTTTGTT 59.857 52.381 0.00 0.00 0.00 2.83
2634 2959 0.765510 GTGTGGGGAGAGAGGTTTGT 59.234 55.000 0.00 0.00 0.00 2.83
2635 2960 0.764890 TGTGTGGGGAGAGAGGTTTG 59.235 55.000 0.00 0.00 0.00 2.93
2636 2961 1.059913 CTGTGTGGGGAGAGAGGTTT 58.940 55.000 0.00 0.00 0.00 3.27
2637 2962 0.191064 TCTGTGTGGGGAGAGAGGTT 59.809 55.000 0.00 0.00 0.00 3.50
2638 2963 0.415429 ATCTGTGTGGGGAGAGAGGT 59.585 55.000 0.00 0.00 0.00 3.85
2639 2964 0.829333 CATCTGTGTGGGGAGAGAGG 59.171 60.000 0.00 0.00 0.00 3.69
2729 3065 7.337938 AGGTTTTGTGAACAGGATTTGATTTT 58.662 30.769 0.00 0.00 0.00 1.82
2731 3067 6.484364 AGGTTTTGTGAACAGGATTTGATT 57.516 33.333 0.00 0.00 0.00 2.57
2732 3068 6.484364 AAGGTTTTGTGAACAGGATTTGAT 57.516 33.333 0.00 0.00 0.00 2.57
2974 3314 9.132521 GTGAAATATGTTTTCTCAAATCAGTGG 57.867 33.333 0.00 0.00 0.00 4.00
3135 3675 8.586273 CGAGCGAATTTGTTTTGAATTGATAAT 58.414 29.630 0.00 0.00 0.00 1.28
3136 3676 7.410300 GCGAGCGAATTTGTTTTGAATTGATAA 60.410 33.333 0.00 0.00 0.00 1.75
3137 3677 6.033407 GCGAGCGAATTTGTTTTGAATTGATA 59.967 34.615 0.00 0.00 0.00 2.15
3138 3678 5.164061 GCGAGCGAATTTGTTTTGAATTGAT 60.164 36.000 0.00 0.00 0.00 2.57
3139 3679 4.148000 GCGAGCGAATTTGTTTTGAATTGA 59.852 37.500 0.00 0.00 0.00 2.57
3140 3680 4.148696 AGCGAGCGAATTTGTTTTGAATTG 59.851 37.500 0.00 0.00 0.00 2.32
3141 3681 4.298332 AGCGAGCGAATTTGTTTTGAATT 58.702 34.783 0.00 0.00 0.00 2.17
3142 3682 3.900941 AGCGAGCGAATTTGTTTTGAAT 58.099 36.364 0.00 0.00 0.00 2.57
3143 3683 3.242903 TGAGCGAGCGAATTTGTTTTGAA 60.243 39.130 0.00 0.00 0.00 2.69
3144 3684 2.289274 TGAGCGAGCGAATTTGTTTTGA 59.711 40.909 0.00 0.00 0.00 2.69
3393 5422 8.327941 CAGTTTTCTGGAATGACTGAAATCTA 57.672 34.615 15.79 0.00 43.61 1.98
3496 5595 7.893302 ACCCCTCTTGAATACATTTCAAACATA 59.107 33.333 2.77 0.00 37.89 2.29
3521 5620 5.241728 AGCACCAAGACCTTTAAAATGAGAC 59.758 40.000 0.00 0.00 0.00 3.36
3529 5628 3.908103 ACTCCTAGCACCAAGACCTTTAA 59.092 43.478 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.