Multiple sequence alignment - TraesCS3A01G120000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G120000 chr3A 100.000 2225 0 0 1 2225 93704729 93702505 0.000000e+00 4109
1 TraesCS3A01G120000 chr3B 88.889 1404 77 28 722 2089 125996287 125994927 0.000000e+00 1655
2 TraesCS3A01G120000 chr3B 94.521 146 6 2 2080 2225 125994808 125994665 8.000000e-55 224
3 TraesCS3A01G120000 chr3D 90.207 725 37 12 721 1420 79623387 79622672 0.000000e+00 915
4 TraesCS3A01G120000 chr3D 89.008 655 42 9 1459 2089 79622663 79622015 0.000000e+00 784
5 TraesCS3A01G120000 chr3D 93.750 144 7 2 2080 2223 79621893 79621752 4.810000e-52 215
6 TraesCS3A01G120000 chr3D 84.103 195 19 8 497 686 79623563 79623376 6.310000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G120000 chr3A 93702505 93704729 2224 True 4109.0 4109 100.000 1 2225 1 chr3A.!!$R1 2224
1 TraesCS3A01G120000 chr3B 125994665 125996287 1622 True 939.5 1655 91.705 722 2225 2 chr3B.!!$R1 1503
2 TraesCS3A01G120000 chr3D 79621752 79623563 1811 True 523.0 915 89.267 497 2223 4 chr3D.!!$R1 1726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.03918 TCACTAGTGGAGCGGAAGGA 59.961 55.0 22.48 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2056 0.245813 GCTTCTTACCCGACGACCTT 59.754 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.748461 CAAGAAAAGACCGACGCAAA 57.252 45.000 0.00 0.00 0.00 3.68
20 21 2.372350 CAAGAAAAGACCGACGCAAAC 58.628 47.619 0.00 0.00 0.00 2.93
21 22 1.949465 AGAAAAGACCGACGCAAACT 58.051 45.000 0.00 0.00 0.00 2.66
22 23 1.865340 AGAAAAGACCGACGCAAACTC 59.135 47.619 0.00 0.00 0.00 3.01
23 24 1.595794 GAAAAGACCGACGCAAACTCA 59.404 47.619 0.00 0.00 0.00 3.41
24 25 0.935196 AAAGACCGACGCAAACTCAC 59.065 50.000 0.00 0.00 0.00 3.51
25 26 0.104304 AAGACCGACGCAAACTCACT 59.896 50.000 0.00 0.00 0.00 3.41
26 27 0.956633 AGACCGACGCAAACTCACTA 59.043 50.000 0.00 0.00 0.00 2.74
27 28 1.068472 AGACCGACGCAAACTCACTAG 60.068 52.381 0.00 0.00 0.00 2.57
28 29 0.672342 ACCGACGCAAACTCACTAGT 59.328 50.000 0.00 0.00 37.65 2.57
29 30 1.060713 CCGACGCAAACTCACTAGTG 58.939 55.000 17.17 17.17 35.62 2.74
30 31 1.060713 CGACGCAAACTCACTAGTGG 58.939 55.000 22.48 15.10 35.62 4.00
31 32 1.335597 CGACGCAAACTCACTAGTGGA 60.336 52.381 22.48 8.69 35.62 4.02
32 33 2.329379 GACGCAAACTCACTAGTGGAG 58.671 52.381 22.48 18.78 35.62 3.86
33 34 1.071605 CGCAAACTCACTAGTGGAGC 58.928 55.000 22.48 16.57 35.62 4.70
34 35 1.071605 GCAAACTCACTAGTGGAGCG 58.928 55.000 22.48 11.07 35.62 5.03
35 36 1.714794 CAAACTCACTAGTGGAGCGG 58.285 55.000 22.48 10.23 35.62 5.52
36 37 1.272490 CAAACTCACTAGTGGAGCGGA 59.728 52.381 22.48 1.21 35.62 5.54
37 38 1.629043 AACTCACTAGTGGAGCGGAA 58.371 50.000 22.48 0.46 35.62 4.30
38 39 1.178276 ACTCACTAGTGGAGCGGAAG 58.822 55.000 22.48 12.70 35.79 3.46
39 40 0.457851 CTCACTAGTGGAGCGGAAGG 59.542 60.000 22.48 0.00 0.00 3.46
40 41 0.039180 TCACTAGTGGAGCGGAAGGA 59.961 55.000 22.48 0.00 0.00 3.36
41 42 0.173708 CACTAGTGGAGCGGAAGGAC 59.826 60.000 15.49 0.00 0.00 3.85
42 43 0.039911 ACTAGTGGAGCGGAAGGACT 59.960 55.000 0.00 0.00 0.00 3.85
43 44 1.187087 CTAGTGGAGCGGAAGGACTT 58.813 55.000 0.00 0.00 0.00 3.01
44 45 2.291411 ACTAGTGGAGCGGAAGGACTTA 60.291 50.000 0.00 0.00 0.00 2.24
45 46 1.187087 AGTGGAGCGGAAGGACTTAG 58.813 55.000 0.00 0.00 0.00 2.18
46 47 1.183549 GTGGAGCGGAAGGACTTAGA 58.816 55.000 0.00 0.00 0.00 2.10
47 48 1.757699 GTGGAGCGGAAGGACTTAGAT 59.242 52.381 0.00 0.00 0.00 1.98
48 49 1.757118 TGGAGCGGAAGGACTTAGATG 59.243 52.381 0.00 0.00 0.00 2.90
49 50 2.032620 GGAGCGGAAGGACTTAGATGA 58.967 52.381 0.00 0.00 0.00 2.92
50 51 2.431057 GGAGCGGAAGGACTTAGATGAA 59.569 50.000 0.00 0.00 0.00 2.57
51 52 3.491792 GGAGCGGAAGGACTTAGATGAAG 60.492 52.174 0.00 0.00 41.37 3.02
52 53 2.432510 AGCGGAAGGACTTAGATGAAGG 59.567 50.000 0.00 0.00 39.74 3.46
53 54 2.483889 GCGGAAGGACTTAGATGAAGGG 60.484 54.545 0.00 0.00 39.74 3.95
54 55 2.483889 CGGAAGGACTTAGATGAAGGGC 60.484 54.545 0.00 0.00 39.74 5.19
55 56 2.505819 GGAAGGACTTAGATGAAGGGCA 59.494 50.000 0.00 0.00 39.74 5.36
56 57 3.536570 GAAGGACTTAGATGAAGGGCAC 58.463 50.000 0.00 0.00 39.74 5.01
57 58 2.551270 AGGACTTAGATGAAGGGCACA 58.449 47.619 0.00 0.00 39.74 4.57
58 59 3.118531 AGGACTTAGATGAAGGGCACAT 58.881 45.455 0.00 0.00 39.74 3.21
59 60 3.135530 AGGACTTAGATGAAGGGCACATC 59.864 47.826 9.43 9.43 42.81 3.06
66 67 4.629251 GATGAAGGGCACATCTTCTTTC 57.371 45.455 0.18 0.00 40.73 2.62
67 68 3.507162 TGAAGGGCACATCTTCTTTCA 57.493 42.857 0.00 0.00 40.73 2.69
68 69 4.038271 TGAAGGGCACATCTTCTTTCAT 57.962 40.909 0.00 0.00 40.73 2.57
69 70 4.410099 TGAAGGGCACATCTTCTTTCATT 58.590 39.130 0.00 0.00 40.73 2.57
70 71 4.834496 TGAAGGGCACATCTTCTTTCATTT 59.166 37.500 0.00 0.00 40.73 2.32
71 72 4.796038 AGGGCACATCTTCTTTCATTTG 57.204 40.909 0.00 0.00 0.00 2.32
72 73 4.410099 AGGGCACATCTTCTTTCATTTGA 58.590 39.130 0.00 0.00 0.00 2.69
73 74 4.834496 AGGGCACATCTTCTTTCATTTGAA 59.166 37.500 0.00 0.00 0.00 2.69
74 75 5.482878 AGGGCACATCTTCTTTCATTTGAAT 59.517 36.000 0.00 0.00 33.54 2.57
75 76 6.013984 AGGGCACATCTTCTTTCATTTGAATT 60.014 34.615 0.00 0.00 33.54 2.17
76 77 6.091713 GGGCACATCTTCTTTCATTTGAATTG 59.908 38.462 0.00 0.00 33.54 2.32
77 78 6.091713 GGCACATCTTCTTTCATTTGAATTGG 59.908 38.462 0.00 0.00 33.54 3.16
78 79 6.647895 GCACATCTTCTTTCATTTGAATTGGT 59.352 34.615 0.00 0.00 33.54 3.67
79 80 7.172019 GCACATCTTCTTTCATTTGAATTGGTT 59.828 33.333 0.00 0.00 33.54 3.67
80 81 8.492748 CACATCTTCTTTCATTTGAATTGGTTG 58.507 33.333 0.00 0.00 33.54 3.77
81 82 8.423349 ACATCTTCTTTCATTTGAATTGGTTGA 58.577 29.630 0.00 0.00 33.54 3.18
82 83 9.263538 CATCTTCTTTCATTTGAATTGGTTGAA 57.736 29.630 0.00 0.00 33.54 2.69
83 84 8.876275 TCTTCTTTCATTTGAATTGGTTGAAG 57.124 30.769 0.00 0.00 33.54 3.02
84 85 7.927629 TCTTCTTTCATTTGAATTGGTTGAAGG 59.072 33.333 0.00 0.00 33.54 3.46
85 86 7.123355 TCTTTCATTTGAATTGGTTGAAGGT 57.877 32.000 0.00 0.00 33.54 3.50
86 87 6.985645 TCTTTCATTTGAATTGGTTGAAGGTG 59.014 34.615 0.00 0.00 33.54 4.00
87 88 5.212532 TCATTTGAATTGGTTGAAGGTGG 57.787 39.130 0.00 0.00 0.00 4.61
88 89 4.040217 TCATTTGAATTGGTTGAAGGTGGG 59.960 41.667 0.00 0.00 0.00 4.61
89 90 1.337118 TGAATTGGTTGAAGGTGGGC 58.663 50.000 0.00 0.00 0.00 5.36
90 91 1.337118 GAATTGGTTGAAGGTGGGCA 58.663 50.000 0.00 0.00 0.00 5.36
91 92 1.691434 GAATTGGTTGAAGGTGGGCAA 59.309 47.619 0.00 0.00 0.00 4.52
92 93 1.799933 ATTGGTTGAAGGTGGGCAAA 58.200 45.000 0.00 0.00 0.00 3.68
93 94 1.799933 TTGGTTGAAGGTGGGCAAAT 58.200 45.000 0.00 0.00 0.00 2.32
94 95 2.685106 TGGTTGAAGGTGGGCAAATA 57.315 45.000 0.00 0.00 0.00 1.40
95 96 2.964209 TGGTTGAAGGTGGGCAAATAA 58.036 42.857 0.00 0.00 0.00 1.40
96 97 2.630580 TGGTTGAAGGTGGGCAAATAAC 59.369 45.455 0.00 0.00 0.00 1.89
97 98 2.028476 GGTTGAAGGTGGGCAAATAACC 60.028 50.000 0.00 0.00 0.00 2.85
98 99 2.630580 GTTGAAGGTGGGCAAATAACCA 59.369 45.455 0.00 0.00 36.37 3.67
99 100 2.964209 TGAAGGTGGGCAAATAACCAA 58.036 42.857 0.00 0.00 38.73 3.67
100 101 3.515562 TGAAGGTGGGCAAATAACCAAT 58.484 40.909 0.00 0.00 38.73 3.16
101 102 4.678256 TGAAGGTGGGCAAATAACCAATA 58.322 39.130 0.00 0.00 38.73 1.90
102 103 5.087323 TGAAGGTGGGCAAATAACCAATAA 58.913 37.500 0.00 0.00 38.73 1.40
103 104 5.046950 TGAAGGTGGGCAAATAACCAATAAC 60.047 40.000 0.00 0.00 38.73 1.89
104 105 4.421131 AGGTGGGCAAATAACCAATAACA 58.579 39.130 0.00 0.00 38.73 2.41
105 106 5.029474 AGGTGGGCAAATAACCAATAACAT 58.971 37.500 0.00 0.00 38.73 2.71
106 107 5.487131 AGGTGGGCAAATAACCAATAACATT 59.513 36.000 0.00 0.00 38.73 2.71
107 108 6.670027 AGGTGGGCAAATAACCAATAACATTA 59.330 34.615 0.00 0.00 38.73 1.90
108 109 7.181125 AGGTGGGCAAATAACCAATAACATTAA 59.819 33.333 0.00 0.00 38.73 1.40
109 110 7.494298 GGTGGGCAAATAACCAATAACATTAAG 59.506 37.037 0.00 0.00 38.73 1.85
110 111 8.038351 GTGGGCAAATAACCAATAACATTAAGT 58.962 33.333 0.00 0.00 38.73 2.24
111 112 9.256228 TGGGCAAATAACCAATAACATTAAGTA 57.744 29.630 0.00 0.00 32.89 2.24
112 113 9.744468 GGGCAAATAACCAATAACATTAAGTAG 57.256 33.333 0.00 0.00 0.00 2.57
113 114 9.244799 GGCAAATAACCAATAACATTAAGTAGC 57.755 33.333 0.00 0.00 0.00 3.58
114 115 9.796120 GCAAATAACCAATAACATTAAGTAGCA 57.204 29.630 0.00 0.00 0.00 3.49
120 121 7.748847 ACCAATAACATTAAGTAGCAAAGTCG 58.251 34.615 0.00 0.00 0.00 4.18
121 122 7.604927 ACCAATAACATTAAGTAGCAAAGTCGA 59.395 33.333 0.00 0.00 0.00 4.20
122 123 8.447833 CCAATAACATTAAGTAGCAAAGTCGAA 58.552 33.333 0.00 0.00 0.00 3.71
123 124 9.988350 CAATAACATTAAGTAGCAAAGTCGAAT 57.012 29.630 0.00 0.00 0.00 3.34
127 128 8.773404 ACATTAAGTAGCAAAGTCGAATAAGT 57.227 30.769 0.00 0.00 0.00 2.24
128 129 9.216117 ACATTAAGTAGCAAAGTCGAATAAGTT 57.784 29.630 0.00 0.00 0.00 2.66
131 132 7.964604 AAGTAGCAAAGTCGAATAAGTTTCT 57.035 32.000 0.00 0.00 0.00 2.52
132 133 7.583860 AGTAGCAAAGTCGAATAAGTTTCTC 57.416 36.000 0.00 0.00 0.00 2.87
133 134 5.864628 AGCAAAGTCGAATAAGTTTCTCC 57.135 39.130 0.00 0.00 0.00 3.71
134 135 5.305585 AGCAAAGTCGAATAAGTTTCTCCA 58.694 37.500 0.00 0.00 0.00 3.86
135 136 5.940470 AGCAAAGTCGAATAAGTTTCTCCAT 59.060 36.000 0.00 0.00 0.00 3.41
136 137 7.103641 AGCAAAGTCGAATAAGTTTCTCCATA 58.896 34.615 0.00 0.00 0.00 2.74
137 138 7.770897 AGCAAAGTCGAATAAGTTTCTCCATAT 59.229 33.333 0.00 0.00 0.00 1.78
138 139 8.064814 GCAAAGTCGAATAAGTTTCTCCATATC 58.935 37.037 0.00 0.00 0.00 1.63
139 140 7.932120 AAGTCGAATAAGTTTCTCCATATCG 57.068 36.000 0.00 0.00 0.00 2.92
140 141 6.448006 AGTCGAATAAGTTTCTCCATATCGG 58.552 40.000 0.00 0.00 0.00 4.18
141 142 6.264744 AGTCGAATAAGTTTCTCCATATCGGA 59.735 38.462 0.00 0.00 43.61 4.55
142 143 7.039644 AGTCGAATAAGTTTCTCCATATCGGAT 60.040 37.037 0.00 0.00 45.19 4.18
143 144 8.242053 GTCGAATAAGTTTCTCCATATCGGATA 58.758 37.037 0.00 0.00 45.19 2.59
144 145 8.799367 TCGAATAAGTTTCTCCATATCGGATAA 58.201 33.333 1.16 0.00 45.19 1.75
145 146 9.587772 CGAATAAGTTTCTCCATATCGGATAAT 57.412 33.333 1.16 0.00 45.19 1.28
151 152 9.627123 AGTTTCTCCATATCGGATAATTTTTGA 57.373 29.630 1.16 0.00 45.19 2.69
152 153 9.884465 GTTTCTCCATATCGGATAATTTTTGAG 57.116 33.333 1.16 3.06 45.19 3.02
153 154 9.845740 TTTCTCCATATCGGATAATTTTTGAGA 57.154 29.630 1.16 5.05 45.19 3.27
154 155 8.833231 TCTCCATATCGGATAATTTTTGAGAC 57.167 34.615 1.16 0.00 45.19 3.36
155 156 7.878127 TCTCCATATCGGATAATTTTTGAGACC 59.122 37.037 1.16 0.00 45.19 3.85
156 157 7.745717 TCCATATCGGATAATTTTTGAGACCT 58.254 34.615 1.16 0.00 39.64 3.85
157 158 7.661437 TCCATATCGGATAATTTTTGAGACCTG 59.339 37.037 1.16 0.00 39.64 4.00
158 159 5.757850 ATCGGATAATTTTTGAGACCTGC 57.242 39.130 0.00 0.00 0.00 4.85
159 160 4.843728 TCGGATAATTTTTGAGACCTGCT 58.156 39.130 0.00 0.00 0.00 4.24
160 161 5.984725 TCGGATAATTTTTGAGACCTGCTA 58.015 37.500 0.00 0.00 0.00 3.49
161 162 6.411376 TCGGATAATTTTTGAGACCTGCTAA 58.589 36.000 0.00 0.00 0.00 3.09
162 163 7.054124 TCGGATAATTTTTGAGACCTGCTAAT 58.946 34.615 0.00 0.00 0.00 1.73
163 164 7.226720 TCGGATAATTTTTGAGACCTGCTAATC 59.773 37.037 0.00 0.00 0.00 1.75
164 165 7.012327 CGGATAATTTTTGAGACCTGCTAATCA 59.988 37.037 0.00 0.00 0.00 2.57
165 166 8.854117 GGATAATTTTTGAGACCTGCTAATCAT 58.146 33.333 0.00 0.00 0.00 2.45
169 170 8.757982 ATTTTTGAGACCTGCTAATCATATGT 57.242 30.769 1.90 0.00 0.00 2.29
170 171 9.851686 ATTTTTGAGACCTGCTAATCATATGTA 57.148 29.630 1.90 0.00 0.00 2.29
171 172 9.851686 TTTTTGAGACCTGCTAATCATATGTAT 57.148 29.630 1.90 0.00 0.00 2.29
172 173 8.837788 TTTGAGACCTGCTAATCATATGTATG 57.162 34.615 1.90 0.00 35.04 2.39
173 174 7.781324 TGAGACCTGCTAATCATATGTATGA 57.219 36.000 1.90 5.27 45.78 2.15
220 221 9.970553 ACATAGTATAATATGTTACTCCCGAGA 57.029 33.333 17.81 0.00 42.40 4.04
229 230 9.702253 AATATGTTACTCCCGAGATATGTATCT 57.298 33.333 2.27 2.27 45.26 1.98
230 231 9.702253 ATATGTTACTCCCGAGATATGTATCTT 57.298 33.333 4.18 0.00 42.79 2.40
231 232 7.215719 TGTTACTCCCGAGATATGTATCTTG 57.784 40.000 9.43 9.43 42.79 3.02
232 233 6.776116 TGTTACTCCCGAGATATGTATCTTGT 59.224 38.462 13.60 7.28 42.79 3.16
233 234 7.287005 TGTTACTCCCGAGATATGTATCTTGTT 59.713 37.037 13.60 2.03 42.79 2.83
234 235 8.790718 GTTACTCCCGAGATATGTATCTTGTTA 58.209 37.037 13.60 3.82 42.79 2.41
235 236 7.216973 ACTCCCGAGATATGTATCTTGTTAC 57.783 40.000 13.60 0.00 42.79 2.50
236 237 6.208994 ACTCCCGAGATATGTATCTTGTTACC 59.791 42.308 13.60 0.00 42.79 2.85
237 238 5.479375 TCCCGAGATATGTATCTTGTTACCC 59.521 44.000 13.60 0.00 42.79 3.69
238 239 5.337330 CCCGAGATATGTATCTTGTTACCCC 60.337 48.000 13.60 0.00 42.79 4.95
239 240 5.399858 CGAGATATGTATCTTGTTACCCCG 58.600 45.833 4.18 0.00 42.79 5.73
240 241 5.148651 AGATATGTATCTTGTTACCCCGC 57.851 43.478 0.00 0.00 39.96 6.13
241 242 4.591498 AGATATGTATCTTGTTACCCCGCA 59.409 41.667 0.00 0.00 39.96 5.69
242 243 3.637911 ATGTATCTTGTTACCCCGCAA 57.362 42.857 0.00 0.00 0.00 4.85
243 244 3.420300 TGTATCTTGTTACCCCGCAAA 57.580 42.857 0.00 0.00 0.00 3.68
244 245 3.752665 TGTATCTTGTTACCCCGCAAAA 58.247 40.909 0.00 0.00 0.00 2.44
245 246 4.142790 TGTATCTTGTTACCCCGCAAAAA 58.857 39.130 0.00 0.00 0.00 1.94
274 275 7.311364 GAGATATGTATCTCGTTACTCCCTC 57.689 44.000 12.77 0.00 46.31 4.30
275 276 7.023171 AGATATGTATCTCGTTACTCCCTCT 57.977 40.000 0.00 0.00 38.64 3.69
276 277 8.148437 AGATATGTATCTCGTTACTCCCTCTA 57.852 38.462 0.00 0.00 38.64 2.43
277 278 8.774183 AGATATGTATCTCGTTACTCCCTCTAT 58.226 37.037 0.00 0.00 38.64 1.98
278 279 9.398538 GATATGTATCTCGTTACTCCCTCTATT 57.601 37.037 0.00 0.00 0.00 1.73
279 280 7.690952 ATGTATCTCGTTACTCCCTCTATTC 57.309 40.000 0.00 0.00 0.00 1.75
280 281 6.598503 TGTATCTCGTTACTCCCTCTATTCA 58.401 40.000 0.00 0.00 0.00 2.57
281 282 7.232188 TGTATCTCGTTACTCCCTCTATTCAT 58.768 38.462 0.00 0.00 0.00 2.57
282 283 8.380867 TGTATCTCGTTACTCCCTCTATTCATA 58.619 37.037 0.00 0.00 0.00 2.15
283 284 9.228949 GTATCTCGTTACTCCCTCTATTCATAA 57.771 37.037 0.00 0.00 0.00 1.90
284 285 8.707796 ATCTCGTTACTCCCTCTATTCATAAA 57.292 34.615 0.00 0.00 0.00 1.40
285 286 8.707796 TCTCGTTACTCCCTCTATTCATAAAT 57.292 34.615 0.00 0.00 0.00 1.40
286 287 9.803507 TCTCGTTACTCCCTCTATTCATAAATA 57.196 33.333 0.00 0.00 0.00 1.40
320 321 9.947433 TTCTAATTTTTCTCTAAATCGGGTACA 57.053 29.630 0.00 0.00 0.00 2.90
327 328 9.754382 TTTTCTCTAAATCGGGTACATATACAC 57.246 33.333 0.00 0.00 32.40 2.90
338 339 6.917533 GGGTACATATACACGCTTAGTATGT 58.082 40.000 0.00 0.00 38.89 2.29
339 340 7.373493 GGGTACATATACACGCTTAGTATGTT 58.627 38.462 0.00 0.00 37.26 2.71
340 341 7.869429 GGGTACATATACACGCTTAGTATGTTT 59.131 37.037 0.00 0.00 37.26 2.83
341 342 8.697067 GGTACATATACACGCTTAGTATGTTTG 58.303 37.037 0.00 0.00 37.26 2.93
342 343 9.241317 GTACATATACACGCTTAGTATGTTTGT 57.759 33.333 0.00 0.00 37.26 2.83
343 344 8.712285 ACATATACACGCTTAGTATGTTTGTT 57.288 30.769 0.00 0.00 33.50 2.83
344 345 8.814235 ACATATACACGCTTAGTATGTTTGTTC 58.186 33.333 0.00 0.00 33.50 3.18
345 346 8.813282 CATATACACGCTTAGTATGTTTGTTCA 58.187 33.333 0.00 0.00 34.28 3.18
346 347 5.338614 ACACGCTTAGTATGTTTGTTCAC 57.661 39.130 0.00 0.00 0.00 3.18
347 348 5.054477 ACACGCTTAGTATGTTTGTTCACT 58.946 37.500 0.00 0.00 0.00 3.41
348 349 5.526111 ACACGCTTAGTATGTTTGTTCACTT 59.474 36.000 0.00 0.00 0.00 3.16
349 350 6.702723 ACACGCTTAGTATGTTTGTTCACTTA 59.297 34.615 0.00 0.00 0.00 2.24
350 351 7.386848 ACACGCTTAGTATGTTTGTTCACTTAT 59.613 33.333 0.00 0.00 0.00 1.73
351 352 7.898309 CACGCTTAGTATGTTTGTTCACTTATC 59.102 37.037 0.00 0.00 0.00 1.75
352 353 7.817962 ACGCTTAGTATGTTTGTTCACTTATCT 59.182 33.333 0.00 0.00 0.00 1.98
353 354 9.297586 CGCTTAGTATGTTTGTTCACTTATCTA 57.702 33.333 0.00 0.00 0.00 1.98
369 370 9.339850 TCACTTATCTAAGACTGTATGTAGTCC 57.660 37.037 4.03 0.00 46.48 3.85
370 371 9.121658 CACTTATCTAAGACTGTATGTAGTCCA 57.878 37.037 4.03 0.00 46.48 4.02
371 372 9.869667 ACTTATCTAAGACTGTATGTAGTCCAT 57.130 33.333 4.03 1.71 46.48 3.41
426 427 9.146984 TGTGAACGAAGAACATAGTATTTTAGG 57.853 33.333 0.00 0.00 0.00 2.69
427 428 9.148104 GTGAACGAAGAACATAGTATTTTAGGT 57.852 33.333 0.00 0.00 0.00 3.08
428 429 9.146984 TGAACGAAGAACATAGTATTTTAGGTG 57.853 33.333 0.00 0.00 0.00 4.00
429 430 9.362539 GAACGAAGAACATAGTATTTTAGGTGA 57.637 33.333 0.00 0.00 0.00 4.02
430 431 8.699283 ACGAAGAACATAGTATTTTAGGTGAC 57.301 34.615 0.00 0.00 0.00 3.67
431 432 7.763071 ACGAAGAACATAGTATTTTAGGTGACC 59.237 37.037 0.00 0.00 0.00 4.02
432 433 7.980099 CGAAGAACATAGTATTTTAGGTGACCT 59.020 37.037 10.00 10.00 37.71 3.85
433 434 9.099454 GAAGAACATAGTATTTTAGGTGACCTG 57.901 37.037 15.83 0.00 34.61 4.00
434 435 8.375493 AGAACATAGTATTTTAGGTGACCTGA 57.625 34.615 15.83 2.22 34.61 3.86
435 436 8.993424 AGAACATAGTATTTTAGGTGACCTGAT 58.007 33.333 15.83 8.20 34.61 2.90
436 437 8.964476 AACATAGTATTTTAGGTGACCTGATG 57.036 34.615 15.83 1.75 34.61 3.07
437 438 7.509546 ACATAGTATTTTAGGTGACCTGATGG 58.490 38.462 15.83 0.00 34.61 3.51
447 448 3.751767 ACCTGATGGTTGTGTGCAT 57.248 47.368 0.00 0.00 46.05 3.96
448 449 1.999648 ACCTGATGGTTGTGTGCATT 58.000 45.000 0.00 0.00 46.05 3.56
449 450 1.888512 ACCTGATGGTTGTGTGCATTC 59.111 47.619 0.00 0.00 46.05 2.67
450 451 1.135603 CCTGATGGTTGTGTGCATTCG 60.136 52.381 0.00 0.00 0.00 3.34
451 452 0.240678 TGATGGTTGTGTGCATTCGC 59.759 50.000 0.00 0.00 39.24 4.70
452 453 0.523072 GATGGTTGTGTGCATTCGCT 59.477 50.000 0.00 0.00 39.64 4.93
453 454 0.523072 ATGGTTGTGTGCATTCGCTC 59.477 50.000 0.00 0.00 39.64 5.03
454 455 1.154413 GGTTGTGTGCATTCGCTCG 60.154 57.895 0.00 0.00 39.64 5.03
455 456 1.569493 GTTGTGTGCATTCGCTCGT 59.431 52.632 0.00 0.00 39.64 4.18
456 457 0.041312 GTTGTGTGCATTCGCTCGTT 60.041 50.000 0.00 0.00 39.64 3.85
457 458 0.041400 TTGTGTGCATTCGCTCGTTG 60.041 50.000 0.00 0.00 39.64 4.10
458 459 1.157257 TGTGTGCATTCGCTCGTTGT 61.157 50.000 0.00 0.00 39.64 3.32
459 460 0.787787 GTGTGCATTCGCTCGTTGTA 59.212 50.000 0.00 0.00 39.64 2.41
460 461 1.067693 TGTGCATTCGCTCGTTGTAG 58.932 50.000 0.00 0.00 39.64 2.74
461 462 1.336424 TGTGCATTCGCTCGTTGTAGA 60.336 47.619 0.00 0.00 39.64 2.59
462 463 1.724623 GTGCATTCGCTCGTTGTAGAA 59.275 47.619 0.00 0.00 39.64 2.10
463 464 2.156891 GTGCATTCGCTCGTTGTAGAAA 59.843 45.455 0.00 0.00 39.64 2.52
464 465 2.156891 TGCATTCGCTCGTTGTAGAAAC 59.843 45.455 0.00 0.00 39.64 2.78
465 466 2.474032 GCATTCGCTCGTTGTAGAAACC 60.474 50.000 0.00 0.00 34.30 3.27
466 467 1.411394 TTCGCTCGTTGTAGAAACCG 58.589 50.000 0.00 0.00 0.00 4.44
467 468 0.387622 TCGCTCGTTGTAGAAACCGG 60.388 55.000 0.00 0.00 0.00 5.28
468 469 1.349259 CGCTCGTTGTAGAAACCGGG 61.349 60.000 6.32 0.00 0.00 5.73
469 470 1.017701 GCTCGTTGTAGAAACCGGGG 61.018 60.000 6.32 0.00 0.00 5.73
470 471 0.319405 CTCGTTGTAGAAACCGGGGT 59.681 55.000 6.32 0.00 0.00 4.95
471 472 0.758123 TCGTTGTAGAAACCGGGGTT 59.242 50.000 6.32 0.00 40.45 4.11
472 473 1.967066 TCGTTGTAGAAACCGGGGTTA 59.033 47.619 6.32 0.00 37.35 2.85
473 474 2.566724 TCGTTGTAGAAACCGGGGTTAT 59.433 45.455 6.32 0.00 37.35 1.89
474 475 2.931969 CGTTGTAGAAACCGGGGTTATC 59.068 50.000 6.32 4.44 37.35 1.75
475 476 3.273434 GTTGTAGAAACCGGGGTTATCC 58.727 50.000 6.32 0.00 37.35 2.59
476 477 2.836667 TGTAGAAACCGGGGTTATCCT 58.163 47.619 6.32 4.72 37.35 3.24
477 478 2.767960 TGTAGAAACCGGGGTTATCCTC 59.232 50.000 6.32 0.00 37.35 3.71
487 488 3.946606 GGGGTTATCCTCGTTTTCAAGA 58.053 45.455 0.00 0.00 35.33 3.02
488 489 3.939592 GGGGTTATCCTCGTTTTCAAGAG 59.060 47.826 0.00 0.00 35.33 2.85
489 490 4.323257 GGGGTTATCCTCGTTTTCAAGAGA 60.323 45.833 0.00 0.00 36.65 3.10
490 491 5.243207 GGGTTATCCTCGTTTTCAAGAGAA 58.757 41.667 0.00 0.00 36.65 2.87
491 492 5.704053 GGGTTATCCTCGTTTTCAAGAGAAA 59.296 40.000 0.00 0.00 41.78 2.52
492 493 8.653992 GGGGTTATCCTCGTTTTCAAGAGAAAA 61.654 40.741 0.00 0.00 41.91 2.29
605 607 2.889678 TGCATAAGGTTTGCATGACACA 59.110 40.909 0.00 0.00 44.73 3.72
606 608 3.057386 TGCATAAGGTTTGCATGACACAG 60.057 43.478 0.00 0.00 44.73 3.66
610 612 3.996150 AGGTTTGCATGACACAGAAAG 57.004 42.857 0.00 0.00 0.00 2.62
621 623 6.816640 GCATGACACAGAAAGTAATAGTACCA 59.183 38.462 0.00 0.00 0.00 3.25
622 624 7.495934 GCATGACACAGAAAGTAATAGTACCAT 59.504 37.037 0.00 0.00 0.00 3.55
672 674 4.480537 TGAGGGGGCCAGAGATTTTTATAA 59.519 41.667 4.39 0.00 0.00 0.98
675 677 5.195756 AGGGGGCCAGAGATTTTTATAAGAA 59.804 40.000 4.39 0.00 0.00 2.52
677 679 6.382859 GGGGGCCAGAGATTTTTATAAGAAAA 59.617 38.462 4.39 0.00 33.46 2.29
678 680 7.093068 GGGGGCCAGAGATTTTTATAAGAAAAA 60.093 37.037 4.39 0.00 32.75 1.94
679 681 7.764443 GGGGCCAGAGATTTTTATAAGAAAAAC 59.236 37.037 4.39 0.00 32.75 2.43
680 682 8.311109 GGGCCAGAGATTTTTATAAGAAAAACA 58.689 33.333 4.39 0.00 32.75 2.83
681 683 9.358872 GGCCAGAGATTTTTATAAGAAAAACAG 57.641 33.333 0.00 0.00 32.75 3.16
682 684 8.864024 GCCAGAGATTTTTATAAGAAAAACAGC 58.136 33.333 0.00 0.00 32.75 4.40
683 685 9.912634 CCAGAGATTTTTATAAGAAAAACAGCA 57.087 29.630 0.00 0.00 32.75 4.41
713 715 5.947503 TTTCGACAAAGAAAAACAGCATG 57.052 34.783 0.00 0.00 38.54 4.06
714 716 5.406649 TTTCGACAAAGAAAAACAGCATGT 58.593 33.333 0.00 0.00 42.72 3.21
715 717 5.288232 TTTCGACAAAGAAAAACAGCATGTG 59.712 36.000 0.00 0.00 41.85 3.21
716 718 7.063593 TTTCGACAAAGAAAAACAGCATGTGT 61.064 34.615 0.00 0.00 41.85 3.72
717 719 8.982860 TTTCGACAAAGAAAAACAGCATGTGTG 61.983 37.037 0.00 0.00 41.85 3.82
771 773 1.380302 GCCCAGTCACCATCCAGTT 59.620 57.895 0.00 0.00 0.00 3.16
817 834 2.128290 CTGACATGCACCCCACCTCA 62.128 60.000 0.00 0.00 0.00 3.86
818 835 1.675641 GACATGCACCCCACCTCAC 60.676 63.158 0.00 0.00 0.00 3.51
820 837 4.033776 ATGCACCCCACCTCACGG 62.034 66.667 0.00 0.00 0.00 4.94
850 867 3.758993 TGGAAGATCCATCCACCCT 57.241 52.632 12.63 0.00 42.67 4.34
867 884 1.072806 CCCTACCGGGCCTATTTAACC 59.927 57.143 6.32 0.00 45.33 2.85
882 899 0.387929 TAACCACCGGCATCGATCTC 59.612 55.000 0.00 0.00 39.00 2.75
906 923 1.456705 ATCGCTCTCCTCCAGACCC 60.457 63.158 0.00 0.00 0.00 4.46
939 956 3.999663 CACCAGTCCATCTCAAAACTCTC 59.000 47.826 0.00 0.00 0.00 3.20
952 969 3.919223 AAACTCTCTCTACACGTGTCC 57.081 47.619 27.16 0.00 0.00 4.02
1357 1416 6.461509 GGTTAGTTTGGCAGATTATGGAATGG 60.462 42.308 0.00 0.00 0.00 3.16
1389 1449 9.034544 AGCAAATGTACATGAAAAAGTTTCTTC 57.965 29.630 9.63 0.00 0.00 2.87
1420 1480 4.589216 ATGATTACATTGCCATTTCCCG 57.411 40.909 0.00 0.00 32.21 5.14
1421 1481 2.692557 TGATTACATTGCCATTTCCCGG 59.307 45.455 0.00 0.00 0.00 5.73
1422 1482 7.012055 TATGATTACATTGCCATTTCCCGGC 62.012 44.000 0.00 0.00 42.39 6.13
1515 1575 6.430308 AGCTGAAATGTCTATATGCTGAATGG 59.570 38.462 0.00 0.00 0.00 3.16
1516 1576 6.349115 GCTGAAATGTCTATATGCTGAATGGG 60.349 42.308 0.00 0.00 0.00 4.00
1566 1626 6.547510 AGCAATCAGGGTCCAATTTTATACTC 59.452 38.462 0.00 0.00 0.00 2.59
1567 1627 6.239036 GCAATCAGGGTCCAATTTTATACTCC 60.239 42.308 0.00 0.00 0.00 3.85
1574 1634 9.406662 AGGGTCCAATTTTATACTCCTGTATAT 57.593 33.333 0.00 0.00 40.21 0.86
1592 1652 1.751437 ATGGCCTTTAGTTTCTCGGC 58.249 50.000 3.32 0.00 39.98 5.54
1613 1677 3.426568 GGCCTTGCTCTCGTGTGC 61.427 66.667 0.00 4.67 0.00 4.57
1618 1682 1.073216 CTTGCTCTCGTGTGCGTAGG 61.073 60.000 6.99 0.00 39.49 3.18
1628 1692 4.752879 TGCGTAGGCGGCCTCAAC 62.753 66.667 27.65 18.28 44.10 3.18
1719 1783 1.498865 CGTGGAAGGTGTGTGAGCAC 61.499 60.000 0.00 0.00 45.44 4.40
1730 1794 3.939939 TGAGCACGGCAGCCTCAA 61.940 61.111 10.54 0.00 34.23 3.02
1732 1796 3.890936 GAGCACGGCAGCCTCAAGT 62.891 63.158 10.54 0.00 34.23 3.16
1745 1809 1.213094 CTCAAGTTGCCGTCGTCGTT 61.213 55.000 0.00 0.00 35.01 3.85
1822 1897 4.722700 GCCACGGACAGCCCACAT 62.723 66.667 0.00 0.00 34.14 3.21
1972 2056 3.309436 CTCCGTGATGGTTCCGGCA 62.309 63.158 0.00 0.00 41.46 5.69
1986 2070 2.658422 GGCAAGGTCGTCGGGTAA 59.342 61.111 0.00 0.00 0.00 2.85
2144 2358 2.415426 CGGGTGGCGTTTGCTTTT 59.585 55.556 0.00 0.00 42.25 2.27
2159 2373 0.310854 CTTTTGGTTGGTGCGTCTCC 59.689 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.031683 AGTTTGCGTCGGTCTTTTCTTG 59.968 45.455 0.00 0.00 0.00 3.02
1 2 2.285977 AGTTTGCGTCGGTCTTTTCTT 58.714 42.857 0.00 0.00 0.00 2.52
2 3 1.865340 GAGTTTGCGTCGGTCTTTTCT 59.135 47.619 0.00 0.00 0.00 2.52
3 4 1.595794 TGAGTTTGCGTCGGTCTTTTC 59.404 47.619 0.00 0.00 0.00 2.29
4 5 1.329599 GTGAGTTTGCGTCGGTCTTTT 59.670 47.619 0.00 0.00 0.00 2.27
5 6 0.935196 GTGAGTTTGCGTCGGTCTTT 59.065 50.000 0.00 0.00 0.00 2.52
6 7 0.104304 AGTGAGTTTGCGTCGGTCTT 59.896 50.000 0.00 0.00 0.00 3.01
7 8 0.956633 TAGTGAGTTTGCGTCGGTCT 59.043 50.000 0.00 0.00 0.00 3.85
8 9 1.335689 ACTAGTGAGTTTGCGTCGGTC 60.336 52.381 0.00 0.00 28.61 4.79
9 10 0.672342 ACTAGTGAGTTTGCGTCGGT 59.328 50.000 0.00 0.00 28.61 4.69
10 11 1.060713 CACTAGTGAGTTTGCGTCGG 58.939 55.000 18.45 0.00 31.73 4.79
11 12 1.060713 CCACTAGTGAGTTTGCGTCG 58.939 55.000 24.68 0.00 31.73 5.12
12 13 2.329379 CTCCACTAGTGAGTTTGCGTC 58.671 52.381 24.68 0.00 31.73 5.19
13 14 1.605712 GCTCCACTAGTGAGTTTGCGT 60.606 52.381 24.68 0.00 31.73 5.24
14 15 1.071605 GCTCCACTAGTGAGTTTGCG 58.928 55.000 24.68 5.59 31.73 4.85
15 16 1.071605 CGCTCCACTAGTGAGTTTGC 58.928 55.000 24.68 17.02 37.99 3.68
16 17 1.272490 TCCGCTCCACTAGTGAGTTTG 59.728 52.381 24.68 7.09 37.99 2.93
17 18 1.629043 TCCGCTCCACTAGTGAGTTT 58.371 50.000 24.68 0.00 37.99 2.66
18 19 1.546476 CTTCCGCTCCACTAGTGAGTT 59.454 52.381 24.68 0.00 37.99 3.01
19 20 1.178276 CTTCCGCTCCACTAGTGAGT 58.822 55.000 24.68 0.00 37.99 3.41
20 21 0.457851 CCTTCCGCTCCACTAGTGAG 59.542 60.000 24.68 18.57 37.99 3.51
21 22 0.039180 TCCTTCCGCTCCACTAGTGA 59.961 55.000 24.68 9.38 37.99 3.41
22 23 0.173708 GTCCTTCCGCTCCACTAGTG 59.826 60.000 16.34 16.34 35.34 2.74
23 24 0.039911 AGTCCTTCCGCTCCACTAGT 59.960 55.000 0.00 0.00 0.00 2.57
24 25 1.187087 AAGTCCTTCCGCTCCACTAG 58.813 55.000 0.00 0.00 0.00 2.57
25 26 2.025605 TCTAAGTCCTTCCGCTCCACTA 60.026 50.000 0.00 0.00 0.00 2.74
26 27 1.187087 CTAAGTCCTTCCGCTCCACT 58.813 55.000 0.00 0.00 0.00 4.00
27 28 1.183549 TCTAAGTCCTTCCGCTCCAC 58.816 55.000 0.00 0.00 0.00 4.02
28 29 1.757118 CATCTAAGTCCTTCCGCTCCA 59.243 52.381 0.00 0.00 0.00 3.86
29 30 2.032620 TCATCTAAGTCCTTCCGCTCC 58.967 52.381 0.00 0.00 0.00 4.70
30 31 3.491792 CCTTCATCTAAGTCCTTCCGCTC 60.492 52.174 0.00 0.00 32.89 5.03
31 32 2.432510 CCTTCATCTAAGTCCTTCCGCT 59.567 50.000 0.00 0.00 32.89 5.52
32 33 2.483889 CCCTTCATCTAAGTCCTTCCGC 60.484 54.545 0.00 0.00 32.89 5.54
33 34 2.483889 GCCCTTCATCTAAGTCCTTCCG 60.484 54.545 0.00 0.00 32.89 4.30
34 35 2.505819 TGCCCTTCATCTAAGTCCTTCC 59.494 50.000 0.00 0.00 32.89 3.46
35 36 3.055094 TGTGCCCTTCATCTAAGTCCTTC 60.055 47.826 0.00 0.00 32.89 3.46
36 37 2.912956 TGTGCCCTTCATCTAAGTCCTT 59.087 45.455 0.00 0.00 32.89 3.36
37 38 2.551270 TGTGCCCTTCATCTAAGTCCT 58.449 47.619 0.00 0.00 32.89 3.85
38 39 3.135530 AGATGTGCCCTTCATCTAAGTCC 59.864 47.826 6.63 0.00 46.57 3.85
39 40 4.414337 AGATGTGCCCTTCATCTAAGTC 57.586 45.455 6.63 0.00 46.57 3.01
45 46 4.012374 TGAAAGAAGATGTGCCCTTCATC 58.988 43.478 0.00 0.00 41.73 2.92
46 47 4.038271 TGAAAGAAGATGTGCCCTTCAT 57.962 40.909 0.00 0.00 41.73 2.57
47 48 3.507162 TGAAAGAAGATGTGCCCTTCA 57.493 42.857 0.00 0.00 41.73 3.02
48 49 5.047802 TCAAATGAAAGAAGATGTGCCCTTC 60.048 40.000 0.00 0.00 40.10 3.46
49 50 4.834496 TCAAATGAAAGAAGATGTGCCCTT 59.166 37.500 0.00 0.00 0.00 3.95
50 51 4.410099 TCAAATGAAAGAAGATGTGCCCT 58.590 39.130 0.00 0.00 0.00 5.19
51 52 4.789012 TCAAATGAAAGAAGATGTGCCC 57.211 40.909 0.00 0.00 0.00 5.36
52 53 6.091713 CCAATTCAAATGAAAGAAGATGTGCC 59.908 38.462 0.00 0.00 37.61 5.01
53 54 6.647895 ACCAATTCAAATGAAAGAAGATGTGC 59.352 34.615 0.00 0.00 37.61 4.57
54 55 8.492748 CAACCAATTCAAATGAAAGAAGATGTG 58.507 33.333 0.00 0.00 37.61 3.21
55 56 8.423349 TCAACCAATTCAAATGAAAGAAGATGT 58.577 29.630 0.00 0.00 37.61 3.06
56 57 8.821147 TCAACCAATTCAAATGAAAGAAGATG 57.179 30.769 0.00 0.00 37.61 2.90
57 58 9.485206 CTTCAACCAATTCAAATGAAAGAAGAT 57.515 29.630 0.00 0.00 37.61 2.40
58 59 7.927629 CCTTCAACCAATTCAAATGAAAGAAGA 59.072 33.333 0.00 0.00 37.61 2.87
59 60 7.712205 ACCTTCAACCAATTCAAATGAAAGAAG 59.288 33.333 0.00 7.17 37.61 2.85
60 61 7.495279 CACCTTCAACCAATTCAAATGAAAGAA 59.505 33.333 0.00 0.00 37.61 2.52
61 62 6.985645 CACCTTCAACCAATTCAAATGAAAGA 59.014 34.615 0.00 0.00 37.61 2.52
62 63 6.203338 CCACCTTCAACCAATTCAAATGAAAG 59.797 38.462 0.00 0.00 37.61 2.62
63 64 6.054295 CCACCTTCAACCAATTCAAATGAAA 58.946 36.000 0.00 0.00 37.61 2.69
64 65 5.454471 CCCACCTTCAACCAATTCAAATGAA 60.454 40.000 0.00 0.00 38.56 2.57
65 66 4.040217 CCCACCTTCAACCAATTCAAATGA 59.960 41.667 0.00 0.00 0.00 2.57
66 67 4.317488 CCCACCTTCAACCAATTCAAATG 58.683 43.478 0.00 0.00 0.00 2.32
67 68 3.244526 GCCCACCTTCAACCAATTCAAAT 60.245 43.478 0.00 0.00 0.00 2.32
68 69 2.103941 GCCCACCTTCAACCAATTCAAA 59.896 45.455 0.00 0.00 0.00 2.69
69 70 1.691434 GCCCACCTTCAACCAATTCAA 59.309 47.619 0.00 0.00 0.00 2.69
70 71 1.337118 GCCCACCTTCAACCAATTCA 58.663 50.000 0.00 0.00 0.00 2.57
71 72 1.337118 TGCCCACCTTCAACCAATTC 58.663 50.000 0.00 0.00 0.00 2.17
72 73 1.799933 TTGCCCACCTTCAACCAATT 58.200 45.000 0.00 0.00 0.00 2.32
73 74 1.799933 TTTGCCCACCTTCAACCAAT 58.200 45.000 0.00 0.00 0.00 3.16
74 75 1.799933 ATTTGCCCACCTTCAACCAA 58.200 45.000 0.00 0.00 0.00 3.67
75 76 2.630580 GTTATTTGCCCACCTTCAACCA 59.369 45.455 0.00 0.00 0.00 3.67
76 77 2.028476 GGTTATTTGCCCACCTTCAACC 60.028 50.000 0.00 0.00 0.00 3.77
77 78 2.630580 TGGTTATTTGCCCACCTTCAAC 59.369 45.455 0.00 0.00 0.00 3.18
78 79 2.964209 TGGTTATTTGCCCACCTTCAA 58.036 42.857 0.00 0.00 0.00 2.69
79 80 2.685106 TGGTTATTTGCCCACCTTCA 57.315 45.000 0.00 0.00 0.00 3.02
80 81 5.046950 TGTTATTGGTTATTTGCCCACCTTC 60.047 40.000 0.00 0.00 0.00 3.46
81 82 4.841246 TGTTATTGGTTATTTGCCCACCTT 59.159 37.500 0.00 0.00 0.00 3.50
82 83 4.421131 TGTTATTGGTTATTTGCCCACCT 58.579 39.130 0.00 0.00 0.00 4.00
83 84 4.810191 TGTTATTGGTTATTTGCCCACC 57.190 40.909 0.00 0.00 0.00 4.61
84 85 8.038351 ACTTAATGTTATTGGTTATTTGCCCAC 58.962 33.333 0.00 0.00 0.00 4.61
85 86 8.140112 ACTTAATGTTATTGGTTATTTGCCCA 57.860 30.769 0.00 0.00 0.00 5.36
86 87 9.744468 CTACTTAATGTTATTGGTTATTTGCCC 57.256 33.333 0.00 0.00 0.00 5.36
87 88 9.244799 GCTACTTAATGTTATTGGTTATTTGCC 57.755 33.333 0.00 0.00 0.00 4.52
88 89 9.796120 TGCTACTTAATGTTATTGGTTATTTGC 57.204 29.630 0.00 0.00 0.00 3.68
94 95 8.234546 CGACTTTGCTACTTAATGTTATTGGTT 58.765 33.333 0.00 0.00 0.00 3.67
95 96 7.604927 TCGACTTTGCTACTTAATGTTATTGGT 59.395 33.333 0.00 0.00 0.00 3.67
96 97 7.970384 TCGACTTTGCTACTTAATGTTATTGG 58.030 34.615 0.00 0.00 0.00 3.16
97 98 9.988350 ATTCGACTTTGCTACTTAATGTTATTG 57.012 29.630 0.00 0.00 0.00 1.90
101 102 9.216117 ACTTATTCGACTTTGCTACTTAATGTT 57.784 29.630 0.00 0.00 0.00 2.71
102 103 8.773404 ACTTATTCGACTTTGCTACTTAATGT 57.227 30.769 0.00 0.00 0.00 2.71
105 106 9.485206 AGAAACTTATTCGACTTTGCTACTTAA 57.515 29.630 0.00 0.00 0.00 1.85
106 107 9.136952 GAGAAACTTATTCGACTTTGCTACTTA 57.863 33.333 0.00 0.00 0.00 2.24
107 108 7.117956 GGAGAAACTTATTCGACTTTGCTACTT 59.882 37.037 0.00 0.00 0.00 2.24
108 109 6.590677 GGAGAAACTTATTCGACTTTGCTACT 59.409 38.462 0.00 0.00 0.00 2.57
109 110 6.367969 TGGAGAAACTTATTCGACTTTGCTAC 59.632 38.462 0.00 0.00 0.00 3.58
110 111 6.460781 TGGAGAAACTTATTCGACTTTGCTA 58.539 36.000 0.00 0.00 0.00 3.49
111 112 5.305585 TGGAGAAACTTATTCGACTTTGCT 58.694 37.500 0.00 0.00 0.00 3.91
112 113 5.607119 TGGAGAAACTTATTCGACTTTGC 57.393 39.130 0.00 0.00 0.00 3.68
113 114 8.269424 CGATATGGAGAAACTTATTCGACTTTG 58.731 37.037 0.00 0.00 0.00 2.77
114 115 7.438459 CCGATATGGAGAAACTTATTCGACTTT 59.562 37.037 0.00 0.00 42.00 2.66
115 116 6.924060 CCGATATGGAGAAACTTATTCGACTT 59.076 38.462 0.00 0.00 42.00 3.01
116 117 6.264744 TCCGATATGGAGAAACTTATTCGACT 59.735 38.462 0.00 0.00 43.74 4.18
117 118 6.444633 TCCGATATGGAGAAACTTATTCGAC 58.555 40.000 0.00 0.00 43.74 4.20
118 119 6.644248 TCCGATATGGAGAAACTTATTCGA 57.356 37.500 0.00 0.00 43.74 3.71
132 133 7.573843 GCAGGTCTCAAAAATTATCCGATATGG 60.574 40.741 0.00 0.00 40.09 2.74
133 134 7.173907 AGCAGGTCTCAAAAATTATCCGATATG 59.826 37.037 0.00 0.00 0.00 1.78
134 135 7.227156 AGCAGGTCTCAAAAATTATCCGATAT 58.773 34.615 0.00 0.00 0.00 1.63
135 136 6.591935 AGCAGGTCTCAAAAATTATCCGATA 58.408 36.000 0.00 0.00 0.00 2.92
136 137 5.440610 AGCAGGTCTCAAAAATTATCCGAT 58.559 37.500 0.00 0.00 0.00 4.18
137 138 4.843728 AGCAGGTCTCAAAAATTATCCGA 58.156 39.130 0.00 0.00 0.00 4.55
138 139 6.677781 TTAGCAGGTCTCAAAAATTATCCG 57.322 37.500 0.00 0.00 0.00 4.18
139 140 8.225603 TGATTAGCAGGTCTCAAAAATTATCC 57.774 34.615 0.00 0.00 0.00 2.59
143 144 9.193806 ACATATGATTAGCAGGTCTCAAAAATT 57.806 29.630 10.38 0.00 0.00 1.82
144 145 8.757982 ACATATGATTAGCAGGTCTCAAAAAT 57.242 30.769 10.38 0.00 0.00 1.82
145 146 9.851686 ATACATATGATTAGCAGGTCTCAAAAA 57.148 29.630 10.38 0.00 0.00 1.94
146 147 9.276590 CATACATATGATTAGCAGGTCTCAAAA 57.723 33.333 10.38 0.00 35.75 2.44
147 148 8.650490 TCATACATATGATTAGCAGGTCTCAAA 58.350 33.333 10.38 0.00 37.76 2.69
148 149 8.193953 TCATACATATGATTAGCAGGTCTCAA 57.806 34.615 10.38 0.00 37.76 3.02
149 150 7.781324 TCATACATATGATTAGCAGGTCTCA 57.219 36.000 10.38 0.00 37.76 3.27
194 195 9.970553 TCTCGGGAGTAACATATTATACTATGT 57.029 33.333 9.34 9.34 42.68 2.29
203 204 9.702253 AGATACATATCTCGGGAGTAACATATT 57.298 33.333 0.00 0.00 38.64 1.28
204 205 9.702253 AAGATACATATCTCGGGAGTAACATAT 57.298 33.333 1.89 0.00 41.96 1.78
205 206 8.957466 CAAGATACATATCTCGGGAGTAACATA 58.043 37.037 1.89 0.00 41.96 2.29
206 207 7.451877 ACAAGATACATATCTCGGGAGTAACAT 59.548 37.037 1.89 0.00 41.96 2.71
207 208 6.776116 ACAAGATACATATCTCGGGAGTAACA 59.224 38.462 1.89 0.00 41.96 2.41
208 209 7.216973 ACAAGATACATATCTCGGGAGTAAC 57.783 40.000 1.89 0.00 41.96 2.50
209 210 7.834881 AACAAGATACATATCTCGGGAGTAA 57.165 36.000 1.89 0.00 41.96 2.24
210 211 7.392673 GGTAACAAGATACATATCTCGGGAGTA 59.607 40.741 1.89 0.00 41.96 2.59
211 212 6.208994 GGTAACAAGATACATATCTCGGGAGT 59.791 42.308 1.89 0.00 41.96 3.85
212 213 6.350277 GGGTAACAAGATACATATCTCGGGAG 60.350 46.154 1.89 0.00 41.96 4.30
213 214 5.479375 GGGTAACAAGATACATATCTCGGGA 59.521 44.000 1.89 0.00 41.96 5.14
214 215 5.337330 GGGGTAACAAGATACATATCTCGGG 60.337 48.000 1.89 0.00 41.96 5.14
215 216 5.621555 CGGGGTAACAAGATACATATCTCGG 60.622 48.000 1.89 1.45 41.96 4.63
216 217 5.399858 CGGGGTAACAAGATACATATCTCG 58.600 45.833 1.89 0.00 41.96 4.04
217 218 5.169295 GCGGGGTAACAAGATACATATCTC 58.831 45.833 1.89 0.00 41.96 2.75
218 219 4.591498 TGCGGGGTAACAAGATACATATCT 59.409 41.667 0.00 0.00 44.54 1.98
219 220 4.890088 TGCGGGGTAACAAGATACATATC 58.110 43.478 0.00 0.00 39.74 1.63
220 221 4.967084 TGCGGGGTAACAAGATACATAT 57.033 40.909 0.00 0.00 39.74 1.78
221 222 4.757019 TTGCGGGGTAACAAGATACATA 57.243 40.909 0.00 0.00 39.74 2.29
222 223 3.637911 TTGCGGGGTAACAAGATACAT 57.362 42.857 0.00 0.00 39.74 2.29
223 224 3.420300 TTTGCGGGGTAACAAGATACA 57.580 42.857 0.00 0.00 39.74 2.29
224 225 4.769859 TTTTTGCGGGGTAACAAGATAC 57.230 40.909 0.00 0.00 39.74 2.24
251 252 7.023171 AGAGGGAGTAACGAGATACATATCT 57.977 40.000 0.88 0.88 45.26 1.98
252 253 8.967664 ATAGAGGGAGTAACGAGATACATATC 57.032 38.462 0.00 0.00 0.00 1.63
253 254 9.398538 GAATAGAGGGAGTAACGAGATACATAT 57.601 37.037 0.00 0.00 0.00 1.78
254 255 8.380867 TGAATAGAGGGAGTAACGAGATACATA 58.619 37.037 0.00 0.00 0.00 2.29
255 256 7.232188 TGAATAGAGGGAGTAACGAGATACAT 58.768 38.462 0.00 0.00 0.00 2.29
256 257 6.598503 TGAATAGAGGGAGTAACGAGATACA 58.401 40.000 0.00 0.00 0.00 2.29
257 258 7.690952 ATGAATAGAGGGAGTAACGAGATAC 57.309 40.000 0.00 0.00 0.00 2.24
258 259 9.803507 TTTATGAATAGAGGGAGTAACGAGATA 57.196 33.333 0.00 0.00 0.00 1.98
259 260 8.707796 TTTATGAATAGAGGGAGTAACGAGAT 57.292 34.615 0.00 0.00 0.00 2.75
260 261 8.707796 ATTTATGAATAGAGGGAGTAACGAGA 57.292 34.615 0.00 0.00 0.00 4.04
294 295 9.947433 TGTACCCGATTTAGAGAAAAATTAGAA 57.053 29.630 0.00 0.00 0.00 2.10
301 302 9.754382 GTGTATATGTACCCGATTTAGAGAAAA 57.246 33.333 0.00 0.00 0.00 2.29
302 303 8.077991 CGTGTATATGTACCCGATTTAGAGAAA 58.922 37.037 0.00 0.00 34.22 2.52
303 304 7.587629 CGTGTATATGTACCCGATTTAGAGAA 58.412 38.462 0.00 0.00 34.22 2.87
304 305 6.348786 GCGTGTATATGTACCCGATTTAGAGA 60.349 42.308 8.57 0.00 34.22 3.10
305 306 5.798934 GCGTGTATATGTACCCGATTTAGAG 59.201 44.000 8.57 0.00 34.22 2.43
306 307 5.474532 AGCGTGTATATGTACCCGATTTAGA 59.525 40.000 8.57 0.00 34.22 2.10
307 308 5.706916 AGCGTGTATATGTACCCGATTTAG 58.293 41.667 8.57 0.00 34.22 1.85
308 309 5.710513 AGCGTGTATATGTACCCGATTTA 57.289 39.130 8.57 0.00 34.22 1.40
309 310 4.595762 AGCGTGTATATGTACCCGATTT 57.404 40.909 8.57 0.00 34.22 2.17
310 311 4.595762 AAGCGTGTATATGTACCCGATT 57.404 40.909 8.57 5.50 35.92 3.34
311 312 4.763793 ACTAAGCGTGTATATGTACCCGAT 59.236 41.667 8.57 0.00 34.22 4.18
312 313 4.136796 ACTAAGCGTGTATATGTACCCGA 58.863 43.478 8.57 0.00 34.22 5.14
313 314 4.494350 ACTAAGCGTGTATATGTACCCG 57.506 45.455 0.27 0.27 35.24 5.28
314 315 6.917533 ACATACTAAGCGTGTATATGTACCC 58.082 40.000 0.00 0.00 35.29 3.69
315 316 8.697067 CAAACATACTAAGCGTGTATATGTACC 58.303 37.037 0.00 0.00 35.85 3.34
316 317 9.241317 ACAAACATACTAAGCGTGTATATGTAC 57.759 33.333 5.96 0.00 35.85 2.90
317 318 9.806203 AACAAACATACTAAGCGTGTATATGTA 57.194 29.630 5.96 0.00 35.85 2.29
318 319 8.712285 AACAAACATACTAAGCGTGTATATGT 57.288 30.769 0.00 0.00 37.93 2.29
319 320 8.813282 TGAACAAACATACTAAGCGTGTATATG 58.187 33.333 0.00 0.00 0.00 1.78
320 321 8.814235 GTGAACAAACATACTAAGCGTGTATAT 58.186 33.333 0.00 0.00 0.00 0.86
321 322 8.030692 AGTGAACAAACATACTAAGCGTGTATA 58.969 33.333 0.00 0.00 0.00 1.47
322 323 6.872020 AGTGAACAAACATACTAAGCGTGTAT 59.128 34.615 0.00 0.00 0.00 2.29
323 324 6.218019 AGTGAACAAACATACTAAGCGTGTA 58.782 36.000 0.00 0.00 0.00 2.90
324 325 5.054477 AGTGAACAAACATACTAAGCGTGT 58.946 37.500 0.00 0.00 0.00 4.49
325 326 5.591643 AGTGAACAAACATACTAAGCGTG 57.408 39.130 0.00 0.00 0.00 5.34
326 327 7.817962 AGATAAGTGAACAAACATACTAAGCGT 59.182 33.333 0.00 0.00 0.00 5.07
327 328 8.186178 AGATAAGTGAACAAACATACTAAGCG 57.814 34.615 0.00 0.00 0.00 4.68
343 344 9.339850 GGACTACATACAGTCTTAGATAAGTGA 57.660 37.037 3.51 0.00 43.73 3.41
344 345 9.121658 TGGACTACATACAGTCTTAGATAAGTG 57.878 37.037 3.51 0.00 43.73 3.16
345 346 9.869667 ATGGACTACATACAGTCTTAGATAAGT 57.130 33.333 3.51 0.00 43.73 2.24
400 401 9.146984 CCTAAAATACTATGTTCTTCGTTCACA 57.853 33.333 0.00 0.00 0.00 3.58
401 402 9.148104 ACCTAAAATACTATGTTCTTCGTTCAC 57.852 33.333 0.00 0.00 0.00 3.18
402 403 9.146984 CACCTAAAATACTATGTTCTTCGTTCA 57.853 33.333 0.00 0.00 0.00 3.18
403 404 9.362539 TCACCTAAAATACTATGTTCTTCGTTC 57.637 33.333 0.00 0.00 0.00 3.95
404 405 9.148104 GTCACCTAAAATACTATGTTCTTCGTT 57.852 33.333 0.00 0.00 0.00 3.85
405 406 7.763071 GGTCACCTAAAATACTATGTTCTTCGT 59.237 37.037 0.00 0.00 0.00 3.85
406 407 7.980099 AGGTCACCTAAAATACTATGTTCTTCG 59.020 37.037 0.00 0.00 28.47 3.79
407 408 9.099454 CAGGTCACCTAAAATACTATGTTCTTC 57.901 37.037 0.00 0.00 29.64 2.87
408 409 8.822805 TCAGGTCACCTAAAATACTATGTTCTT 58.177 33.333 0.00 0.00 29.64 2.52
409 410 8.375493 TCAGGTCACCTAAAATACTATGTTCT 57.625 34.615 0.00 0.00 29.64 3.01
410 411 9.046296 CATCAGGTCACCTAAAATACTATGTTC 57.954 37.037 0.00 0.00 29.64 3.18
411 412 7.993183 CCATCAGGTCACCTAAAATACTATGTT 59.007 37.037 0.00 0.00 29.64 2.71
412 413 7.509546 CCATCAGGTCACCTAAAATACTATGT 58.490 38.462 0.00 0.00 29.64 2.29
413 414 7.969536 CCATCAGGTCACCTAAAATACTATG 57.030 40.000 0.00 0.00 29.64 2.23
430 431 1.135603 CGAATGCACACAACCATCAGG 60.136 52.381 0.00 0.00 42.21 3.86
431 432 1.730121 GCGAATGCACACAACCATCAG 60.730 52.381 0.00 0.00 42.15 2.90
432 433 0.240678 GCGAATGCACACAACCATCA 59.759 50.000 0.00 0.00 42.15 3.07
433 434 0.523072 AGCGAATGCACACAACCATC 59.477 50.000 0.00 0.00 46.23 3.51
434 435 0.523072 GAGCGAATGCACACAACCAT 59.477 50.000 0.00 0.00 46.23 3.55
435 436 1.840630 CGAGCGAATGCACACAACCA 61.841 55.000 0.00 0.00 46.23 3.67
436 437 1.154413 CGAGCGAATGCACACAACC 60.154 57.895 0.00 0.00 46.23 3.77
437 438 0.041312 AACGAGCGAATGCACACAAC 60.041 50.000 0.00 0.00 46.23 3.32
438 439 0.041400 CAACGAGCGAATGCACACAA 60.041 50.000 0.00 0.00 46.23 3.33
439 440 1.157257 ACAACGAGCGAATGCACACA 61.157 50.000 0.00 0.00 46.23 3.72
440 441 0.787787 TACAACGAGCGAATGCACAC 59.212 50.000 0.00 0.00 46.23 3.82
441 442 1.067693 CTACAACGAGCGAATGCACA 58.932 50.000 0.00 0.00 46.23 4.57
442 443 1.346365 TCTACAACGAGCGAATGCAC 58.654 50.000 0.00 0.00 46.23 4.57
443 444 2.073117 TTCTACAACGAGCGAATGCA 57.927 45.000 0.00 0.00 46.23 3.96
444 445 2.474032 GGTTTCTACAACGAGCGAATGC 60.474 50.000 0.00 0.00 43.24 3.56
445 446 2.222508 CGGTTTCTACAACGAGCGAATG 60.223 50.000 0.00 0.00 35.25 2.67
446 447 1.990563 CGGTTTCTACAACGAGCGAAT 59.009 47.619 0.00 0.00 35.25 3.34
447 448 1.411394 CGGTTTCTACAACGAGCGAA 58.589 50.000 0.00 0.00 35.25 4.70
448 449 0.387622 CCGGTTTCTACAACGAGCGA 60.388 55.000 0.00 0.00 35.25 4.93
449 450 1.349259 CCCGGTTTCTACAACGAGCG 61.349 60.000 0.00 0.00 0.00 5.03
450 451 1.017701 CCCCGGTTTCTACAACGAGC 61.018 60.000 0.00 0.00 0.00 5.03
451 452 0.319405 ACCCCGGTTTCTACAACGAG 59.681 55.000 0.00 0.00 0.00 4.18
452 453 0.758123 AACCCCGGTTTCTACAACGA 59.242 50.000 0.00 0.00 34.22 3.85
453 454 2.453983 TAACCCCGGTTTCTACAACG 57.546 50.000 4.08 0.00 39.31 4.10
454 455 3.054875 AGGATAACCCCGGTTTCTACAAC 60.055 47.826 4.08 0.00 39.31 3.32
455 456 3.183801 AGGATAACCCCGGTTTCTACAA 58.816 45.455 4.08 0.00 39.31 2.41
456 457 2.767960 GAGGATAACCCCGGTTTCTACA 59.232 50.000 4.08 0.00 39.31 2.74
457 458 2.223900 CGAGGATAACCCCGGTTTCTAC 60.224 54.545 4.08 0.00 39.31 2.59
458 459 2.034124 CGAGGATAACCCCGGTTTCTA 58.966 52.381 4.08 0.00 39.31 2.10
459 460 0.828677 CGAGGATAACCCCGGTTTCT 59.171 55.000 4.08 0.94 39.31 2.52
460 461 0.538584 ACGAGGATAACCCCGGTTTC 59.461 55.000 4.08 2.87 39.31 2.78
461 462 0.986527 AACGAGGATAACCCCGGTTT 59.013 50.000 4.08 0.00 39.31 3.27
462 463 0.986527 AAACGAGGATAACCCCGGTT 59.013 50.000 0.00 4.23 41.65 4.44
463 464 0.986527 AAAACGAGGATAACCCCGGT 59.013 50.000 0.00 0.00 36.73 5.28
464 465 1.065998 TGAAAACGAGGATAACCCCGG 60.066 52.381 0.00 0.00 36.73 5.73
465 466 2.389962 TGAAAACGAGGATAACCCCG 57.610 50.000 0.00 0.00 36.73 5.73
466 467 3.939592 CTCTTGAAAACGAGGATAACCCC 59.060 47.826 0.00 0.00 36.73 4.95
467 468 4.828829 TCTCTTGAAAACGAGGATAACCC 58.171 43.478 0.00 0.00 36.73 4.11
468 469 6.796705 TTTCTCTTGAAAACGAGGATAACC 57.203 37.500 0.00 0.00 39.02 2.85
479 480 7.948034 TTAGGTCACCTTTTTCTCTTGAAAA 57.052 32.000 0.00 0.49 46.63 2.29
480 481 8.533569 AATTAGGTCACCTTTTTCTCTTGAAA 57.466 30.769 0.00 0.00 36.43 2.69
481 482 8.533569 AAATTAGGTCACCTTTTTCTCTTGAA 57.466 30.769 0.00 0.00 34.61 2.69
482 483 9.807921 ATAAATTAGGTCACCTTTTTCTCTTGA 57.192 29.630 0.00 0.00 34.61 3.02
485 486 9.588096 ACAATAAATTAGGTCACCTTTTTCTCT 57.412 29.630 0.00 0.00 34.61 3.10
527 528 9.866655 TGACATTATTTAGAAAAGATGGGCTAT 57.133 29.630 0.00 0.00 0.00 2.97
559 561 5.677936 TGGCAACTAAACGTAATGTTAACG 58.322 37.500 0.26 0.00 41.48 3.18
561 563 6.583050 GCAATGGCAACTAAACGTAATGTTAA 59.417 34.615 0.00 0.00 39.03 2.01
595 597 6.816640 GGTACTATTACTTTCTGTGTCATGCA 59.183 38.462 0.00 0.00 0.00 3.96
650 652 3.602205 ATAAAAATCTCTGGCCCCCTC 57.398 47.619 0.00 0.00 0.00 4.30
689 691 6.367422 ACATGCTGTTTTTCTTTGTCGAAAAA 59.633 30.769 0.00 0.00 45.46 1.94
690 692 5.866633 ACATGCTGTTTTTCTTTGTCGAAAA 59.133 32.000 0.00 0.00 40.14 2.29
691 693 5.288232 CACATGCTGTTTTTCTTTGTCGAAA 59.712 36.000 0.00 0.00 0.00 3.46
692 694 4.797868 CACATGCTGTTTTTCTTTGTCGAA 59.202 37.500 0.00 0.00 0.00 3.71
693 695 4.142491 ACACATGCTGTTTTTCTTTGTCGA 60.142 37.500 0.00 0.00 0.00 4.20
694 696 4.027458 CACACATGCTGTTTTTCTTTGTCG 60.027 41.667 0.00 0.00 0.00 4.35
695 697 5.379757 CACACATGCTGTTTTTCTTTGTC 57.620 39.130 0.00 0.00 0.00 3.18
725 727 1.327303 TTTTGGCCTCTCGCATGTTT 58.673 45.000 3.32 0.00 40.31 2.83
739 741 0.523072 CTGGGCACTGACGATTTTGG 59.477 55.000 0.00 0.00 0.00 3.28
823 840 4.570874 GATCTTCCAGGGCCGGGC 62.571 72.222 22.00 22.00 0.00 6.13
824 841 3.878667 GGATCTTCCAGGGCCGGG 61.879 72.222 17.56 17.56 36.28 5.73
833 850 1.700186 GGTAGGGTGGATGGATCTTCC 59.300 57.143 7.95 7.95 36.96 3.46
834 851 1.344763 CGGTAGGGTGGATGGATCTTC 59.655 57.143 0.00 0.00 0.00 2.87
835 852 1.424638 CGGTAGGGTGGATGGATCTT 58.575 55.000 0.00 0.00 0.00 2.40
836 853 0.471971 CCGGTAGGGTGGATGGATCT 60.472 60.000 0.00 0.00 0.00 2.75
850 867 1.490069 GGTGGTTAAATAGGCCCGGTA 59.510 52.381 0.00 0.00 0.00 4.02
867 884 0.387202 AAGAGAGATCGATGCCGGTG 59.613 55.000 0.54 0.00 36.24 4.94
882 899 1.337703 CTGGAGGAGAGCGATGAAGAG 59.662 57.143 0.00 0.00 0.00 2.85
906 923 1.294780 GACTGGTGCTGGGAGTCTG 59.705 63.158 0.00 0.00 34.47 3.51
1182 1209 1.146485 CCAGCAGAGGAGCATGGAG 59.854 63.158 0.00 0.00 35.91 3.86
1357 1416 7.224557 ACTTTTTCATGTACATTTGCTTGGTTC 59.775 33.333 5.37 0.00 0.00 3.62
1420 1480 2.362736 CTAAAAAGGGAGTAACGGGCC 58.637 52.381 0.00 0.00 0.00 5.80
1421 1481 1.741706 GCTAAAAAGGGAGTAACGGGC 59.258 52.381 0.00 0.00 0.00 6.13
1422 1482 3.062122 TGCTAAAAAGGGAGTAACGGG 57.938 47.619 0.00 0.00 0.00 5.28
1423 1483 5.392703 GGAAATGCTAAAAAGGGAGTAACGG 60.393 44.000 0.00 0.00 0.00 4.44
1566 1626 5.696724 CGAGAAACTAAAGGCCATATACAGG 59.303 44.000 5.01 0.00 0.00 4.00
1567 1627 5.696724 CCGAGAAACTAAAGGCCATATACAG 59.303 44.000 5.01 0.00 0.00 2.74
1574 1634 3.243128 GCCGAGAAACTAAAGGCCA 57.757 52.632 5.01 0.00 41.81 5.36
1592 1652 4.379243 ACGAGAGCAAGGCCGTGG 62.379 66.667 20.72 5.59 33.69 4.94
1593 1653 3.114616 CACGAGAGCAAGGCCGTG 61.115 66.667 15.06 15.06 44.66 4.94
1613 1677 4.430765 ACGTTGAGGCCGCCTACG 62.431 66.667 26.21 26.21 40.28 3.51
1672 1736 3.793775 TTGCGCGGTGGTTCGAGAA 62.794 57.895 8.83 0.00 31.80 2.87
1719 1783 3.741476 GGCAACTTGAGGCTGCCG 61.741 66.667 13.96 0.85 45.72 5.69
1730 1794 3.335534 GCAACGACGACGGCAACT 61.336 61.111 12.58 0.00 44.46 3.16
1765 1832 5.411831 TGCATATGTCAGGATCAGGATAC 57.588 43.478 4.29 0.00 0.00 2.24
1972 2056 0.245813 GCTTCTTACCCGACGACCTT 59.754 55.000 0.00 0.00 0.00 3.50
1984 2068 2.998480 TGGGACGGCGGCTTCTTA 60.998 61.111 14.66 2.10 0.00 2.10
2055 2139 4.194720 GCCGCGACGAGATCCACT 62.195 66.667 8.23 0.00 0.00 4.00
2144 2358 1.480212 ATCAGGAGACGCACCAACCA 61.480 55.000 0.00 0.00 0.00 3.67
2159 2373 1.360551 CCGGACTAGGCACGATCAG 59.639 63.158 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.