Multiple sequence alignment - TraesCS3A01G119500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G119500 | chr3A | 100.000 | 3314 | 0 | 0 | 1 | 3314 | 93043873 | 93040560 | 0.000000e+00 | 6120 |
1 | TraesCS3A01G119500 | chr3A | 91.314 | 1324 | 106 | 5 | 1001 | 2318 | 93263757 | 93265077 | 0.000000e+00 | 1799 |
2 | TraesCS3A01G119500 | chr3A | 91.219 | 1321 | 110 | 4 | 1001 | 2318 | 93337359 | 93338676 | 0.000000e+00 | 1792 |
3 | TraesCS3A01G119500 | chr3A | 93.208 | 265 | 18 | 0 | 2052 | 2316 | 93265663 | 93265927 | 1.120000e-104 | 390 |
4 | TraesCS3A01G119500 | chr3D | 91.005 | 3113 | 174 | 52 | 267 | 3314 | 79422107 | 79419036 | 0.000000e+00 | 4100 |
5 | TraesCS3A01G119500 | chr3D | 92.078 | 1338 | 91 | 7 | 1001 | 2323 | 79504251 | 79505588 | 0.000000e+00 | 1869 |
6 | TraesCS3A01G119500 | chr3D | 90.712 | 1335 | 112 | 5 | 996 | 2318 | 79428062 | 79429396 | 0.000000e+00 | 1768 |
7 | TraesCS3A01G119500 | chr3D | 86.957 | 138 | 16 | 1 | 19 | 154 | 79248058 | 79248195 | 1.590000e-33 | 154 |
8 | TraesCS3A01G119500 | chr3B | 90.531 | 2672 | 141 | 51 | 268 | 2889 | 125525071 | 125522462 | 0.000000e+00 | 3430 |
9 | TraesCS3A01G119500 | chr3B | 92.157 | 1326 | 98 | 3 | 996 | 2318 | 125551787 | 125553109 | 0.000000e+00 | 1868 |
10 | TraesCS3A01G119500 | chr3B | 92.221 | 1324 | 91 | 6 | 1001 | 2318 | 125778975 | 125780292 | 0.000000e+00 | 1864 |
11 | TraesCS3A01G119500 | chr3B | 86.747 | 332 | 44 | 0 | 2983 | 3314 | 194338630 | 194338299 | 1.450000e-98 | 370 |
12 | TraesCS3A01G119500 | chr3B | 86.364 | 330 | 43 | 1 | 2987 | 3314 | 191120443 | 191120772 | 3.140000e-95 | 359 |
13 | TraesCS3A01G119500 | chr3B | 88.060 | 134 | 14 | 1 | 13 | 144 | 723626613 | 723626480 | 1.230000e-34 | 158 |
14 | TraesCS3A01G119500 | chr3B | 95.238 | 63 | 2 | 1 | 2923 | 2984 | 125522133 | 125522071 | 7.570000e-17 | 99 |
15 | TraesCS3A01G119500 | chr1D | 82.105 | 855 | 124 | 17 | 1445 | 2292 | 117400295 | 117399463 | 0.000000e+00 | 704 |
16 | TraesCS3A01G119500 | chr1D | 85.976 | 328 | 46 | 0 | 2987 | 3314 | 22745737 | 22746064 | 5.260000e-93 | 351 |
17 | TraesCS3A01G119500 | chr5D | 87.009 | 331 | 39 | 3 | 2987 | 3314 | 429035713 | 429035384 | 1.450000e-98 | 370 |
18 | TraesCS3A01G119500 | chr4B | 85.799 | 338 | 47 | 1 | 2978 | 3314 | 488151026 | 488151363 | 1.130000e-94 | 357 |
19 | TraesCS3A01G119500 | chr4B | 92.500 | 120 | 7 | 1 | 18 | 135 | 626638173 | 626638054 | 1.580000e-38 | 171 |
20 | TraesCS3A01G119500 | chr1B | 86.364 | 330 | 41 | 3 | 2987 | 3314 | 643276194 | 643276521 | 1.130000e-94 | 357 |
21 | TraesCS3A01G119500 | chr6B | 86.280 | 328 | 44 | 1 | 2987 | 3314 | 184528891 | 184528565 | 4.070000e-94 | 355 |
22 | TraesCS3A01G119500 | chr2B | 86.061 | 330 | 43 | 2 | 2987 | 3314 | 542670619 | 542670947 | 5.260000e-93 | 351 |
23 | TraesCS3A01G119500 | chr1A | 76.650 | 394 | 65 | 21 | 1022 | 1409 | 129004987 | 129004615 | 3.370000e-45 | 193 |
24 | TraesCS3A01G119500 | chr1A | 90.323 | 124 | 10 | 1 | 18 | 139 | 45829753 | 45829876 | 9.520000e-36 | 161 |
25 | TraesCS3A01G119500 | chrUn | 89.630 | 135 | 12 | 1 | 18 | 150 | 117156483 | 117156349 | 1.580000e-38 | 171 |
26 | TraesCS3A01G119500 | chr7B | 90.076 | 131 | 9 | 4 | 11 | 138 | 705656874 | 705657003 | 2.050000e-37 | 167 |
27 | TraesCS3A01G119500 | chr5A | 91.057 | 123 | 9 | 1 | 15 | 135 | 377936805 | 377936927 | 7.360000e-37 | 165 |
28 | TraesCS3A01G119500 | chr2A | 91.667 | 120 | 8 | 2 | 17 | 134 | 779662555 | 779662436 | 7.360000e-37 | 165 |
29 | TraesCS3A01G119500 | chr4A | 87.681 | 138 | 14 | 2 | 18 | 153 | 736715943 | 736716079 | 1.230000e-34 | 158 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G119500 | chr3A | 93040560 | 93043873 | 3313 | True | 6120.0 | 6120 | 100.0000 | 1 | 3314 | 1 | chr3A.!!$R1 | 3313 |
1 | TraesCS3A01G119500 | chr3A | 93337359 | 93338676 | 1317 | False | 1792.0 | 1792 | 91.2190 | 1001 | 2318 | 1 | chr3A.!!$F1 | 1317 |
2 | TraesCS3A01G119500 | chr3A | 93263757 | 93265927 | 2170 | False | 1094.5 | 1799 | 92.2610 | 1001 | 2318 | 2 | chr3A.!!$F2 | 1317 |
3 | TraesCS3A01G119500 | chr3D | 79419036 | 79422107 | 3071 | True | 4100.0 | 4100 | 91.0050 | 267 | 3314 | 1 | chr3D.!!$R1 | 3047 |
4 | TraesCS3A01G119500 | chr3D | 79504251 | 79505588 | 1337 | False | 1869.0 | 1869 | 92.0780 | 1001 | 2323 | 1 | chr3D.!!$F3 | 1322 |
5 | TraesCS3A01G119500 | chr3D | 79428062 | 79429396 | 1334 | False | 1768.0 | 1768 | 90.7120 | 996 | 2318 | 1 | chr3D.!!$F2 | 1322 |
6 | TraesCS3A01G119500 | chr3B | 125551787 | 125553109 | 1322 | False | 1868.0 | 1868 | 92.1570 | 996 | 2318 | 1 | chr3B.!!$F1 | 1322 |
7 | TraesCS3A01G119500 | chr3B | 125778975 | 125780292 | 1317 | False | 1864.0 | 1864 | 92.2210 | 1001 | 2318 | 1 | chr3B.!!$F2 | 1317 |
8 | TraesCS3A01G119500 | chr3B | 125522071 | 125525071 | 3000 | True | 1764.5 | 3430 | 92.8845 | 268 | 2984 | 2 | chr3B.!!$R3 | 2716 |
9 | TraesCS3A01G119500 | chr1D | 117399463 | 117400295 | 832 | True | 704.0 | 704 | 82.1050 | 1445 | 2292 | 1 | chr1D.!!$R1 | 847 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
422 | 444 | 0.108585 | AGTTCATGCCACTGTCGGTT | 59.891 | 50.0 | 0.0 | 0.0 | 0.0 | 4.44 | F |
687 | 714 | 0.112412 | TGTCCTTTGCCCTTTCTCCC | 59.888 | 55.0 | 0.0 | 0.0 | 0.0 | 4.30 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1368 | 1435 | 1.493950 | GCTCGTCCTTGGCGATCATG | 61.494 | 60.0 | 6.64 | 0.0 | 39.46 | 3.07 | R |
2678 | 2880 | 0.460459 | TGACCGACACAAAACGCAGA | 60.460 | 50.0 | 0.00 | 0.0 | 0.00 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 5.298347 | GGATGTGCAAATACTAGTACTCCC | 58.702 | 45.833 | 4.31 | 0.00 | 0.00 | 4.30 |
24 | 25 | 5.070580 | GGATGTGCAAATACTAGTACTCCCT | 59.929 | 44.000 | 4.31 | 0.00 | 0.00 | 4.20 |
25 | 26 | 5.593679 | TGTGCAAATACTAGTACTCCCTC | 57.406 | 43.478 | 4.31 | 0.00 | 0.00 | 4.30 |
26 | 27 | 4.404715 | TGTGCAAATACTAGTACTCCCTCC | 59.595 | 45.833 | 4.31 | 0.00 | 0.00 | 4.30 |
27 | 28 | 3.635373 | TGCAAATACTAGTACTCCCTCCG | 59.365 | 47.826 | 4.31 | 0.00 | 0.00 | 4.63 |
28 | 29 | 3.635836 | GCAAATACTAGTACTCCCTCCGT | 59.364 | 47.826 | 4.31 | 0.00 | 0.00 | 4.69 |
29 | 30 | 4.261530 | GCAAATACTAGTACTCCCTCCGTC | 60.262 | 50.000 | 4.31 | 0.00 | 0.00 | 4.79 |
30 | 31 | 5.131784 | CAAATACTAGTACTCCCTCCGTCT | 58.868 | 45.833 | 4.31 | 0.00 | 0.00 | 4.18 |
31 | 32 | 4.622260 | ATACTAGTACTCCCTCCGTCTC | 57.378 | 50.000 | 4.31 | 0.00 | 0.00 | 3.36 |
32 | 33 | 2.194859 | ACTAGTACTCCCTCCGTCTCA | 58.805 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
33 | 34 | 2.575279 | ACTAGTACTCCCTCCGTCTCAA | 59.425 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
34 | 35 | 2.599408 | AGTACTCCCTCCGTCTCAAA | 57.401 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
35 | 36 | 2.885616 | AGTACTCCCTCCGTCTCAAAA | 58.114 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
36 | 37 | 3.442076 | AGTACTCCCTCCGTCTCAAAAT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
37 | 38 | 3.838903 | AGTACTCCCTCCGTCTCAAAATT | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
38 | 39 | 3.336138 | ACTCCCTCCGTCTCAAAATTC | 57.664 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
39 | 40 | 2.907042 | ACTCCCTCCGTCTCAAAATTCT | 59.093 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
40 | 41 | 3.328050 | ACTCCCTCCGTCTCAAAATTCTT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
41 | 42 | 3.674997 | TCCCTCCGTCTCAAAATTCTTG | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
42 | 43 | 3.072476 | TCCCTCCGTCTCAAAATTCTTGT | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
43 | 44 | 3.437049 | CCCTCCGTCTCAAAATTCTTGTC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
44 | 45 | 4.319177 | CCTCCGTCTCAAAATTCTTGTCT | 58.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
45 | 46 | 4.757149 | CCTCCGTCTCAAAATTCTTGTCTT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
46 | 47 | 5.932303 | CCTCCGTCTCAAAATTCTTGTCTTA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
47 | 48 | 6.426937 | CCTCCGTCTCAAAATTCTTGTCTTAA | 59.573 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
48 | 49 | 7.041372 | CCTCCGTCTCAAAATTCTTGTCTTAAA | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
49 | 50 | 8.391075 | TCCGTCTCAAAATTCTTGTCTTAAAT | 57.609 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
50 | 51 | 8.846211 | TCCGTCTCAAAATTCTTGTCTTAAATT | 58.154 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
51 | 52 | 9.463443 | CCGTCTCAAAATTCTTGTCTTAAATTT | 57.537 | 29.630 | 0.00 | 0.00 | 34.86 | 1.82 |
75 | 76 | 9.817809 | TTTGTCTAAATACAGATGTATCAGGTC | 57.182 | 33.333 | 5.97 | 5.42 | 40.10 | 3.85 |
76 | 77 | 8.533569 | TGTCTAAATACAGATGTATCAGGTCA | 57.466 | 34.615 | 5.97 | 7.27 | 40.10 | 4.02 |
77 | 78 | 8.414003 | TGTCTAAATACAGATGTATCAGGTCAC | 58.586 | 37.037 | 5.97 | 3.29 | 40.10 | 3.67 |
78 | 79 | 8.414003 | GTCTAAATACAGATGTATCAGGTCACA | 58.586 | 37.037 | 5.97 | 0.00 | 40.10 | 3.58 |
79 | 80 | 9.147732 | TCTAAATACAGATGTATCAGGTCACAT | 57.852 | 33.333 | 5.97 | 0.00 | 40.10 | 3.21 |
80 | 81 | 9.770097 | CTAAATACAGATGTATCAGGTCACATT | 57.230 | 33.333 | 5.97 | 0.00 | 40.10 | 2.71 |
82 | 83 | 9.466497 | AAATACAGATGTATCAGGTCACATTTT | 57.534 | 29.630 | 5.97 | 0.00 | 40.10 | 1.82 |
136 | 137 | 8.642908 | AAAAGACAAAAATTTTAGGACGGAAG | 57.357 | 30.769 | 3.34 | 0.00 | 0.00 | 3.46 |
137 | 138 | 7.576861 | AAGACAAAAATTTTAGGACGGAAGA | 57.423 | 32.000 | 3.34 | 0.00 | 0.00 | 2.87 |
138 | 139 | 7.576861 | AGACAAAAATTTTAGGACGGAAGAA | 57.423 | 32.000 | 3.34 | 0.00 | 0.00 | 2.52 |
139 | 140 | 8.002984 | AGACAAAAATTTTAGGACGGAAGAAA | 57.997 | 30.769 | 3.34 | 0.00 | 0.00 | 2.52 |
140 | 141 | 8.638873 | AGACAAAAATTTTAGGACGGAAGAAAT | 58.361 | 29.630 | 3.34 | 0.00 | 0.00 | 2.17 |
141 | 142 | 9.902196 | GACAAAAATTTTAGGACGGAAGAAATA | 57.098 | 29.630 | 3.34 | 0.00 | 0.00 | 1.40 |
142 | 143 | 9.687210 | ACAAAAATTTTAGGACGGAAGAAATAC | 57.313 | 29.630 | 3.34 | 0.00 | 0.00 | 1.89 |
143 | 144 | 9.685828 | CAAAAATTTTAGGACGGAAGAAATACA | 57.314 | 29.630 | 3.34 | 0.00 | 0.00 | 2.29 |
145 | 146 | 9.687210 | AAAATTTTAGGACGGAAGAAATACAAC | 57.313 | 29.630 | 0.37 | 0.00 | 0.00 | 3.32 |
146 | 147 | 7.989416 | ATTTTAGGACGGAAGAAATACAACA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
147 | 148 | 7.989416 | TTTTAGGACGGAAGAAATACAACAT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
148 | 149 | 9.675464 | ATTTTAGGACGGAAGAAATACAACATA | 57.325 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
149 | 150 | 9.675464 | TTTTAGGACGGAAGAAATACAACATAT | 57.325 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
151 | 152 | 9.754382 | TTAGGACGGAAGAAATACAACATATAC | 57.246 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
152 | 153 | 7.788026 | AGGACGGAAGAAATACAACATATACA | 58.212 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
153 | 154 | 8.429641 | AGGACGGAAGAAATACAACATATACAT | 58.570 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
154 | 155 | 8.709646 | GGACGGAAGAAATACAACATATACATC | 58.290 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
155 | 156 | 8.603242 | ACGGAAGAAATACAACATATACATCC | 57.397 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
156 | 157 | 7.660208 | ACGGAAGAAATACAACATATACATCCC | 59.340 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
157 | 158 | 7.659799 | CGGAAGAAATACAACATATACATCCCA | 59.340 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
158 | 159 | 9.003658 | GGAAGAAATACAACATATACATCCCAG | 57.996 | 37.037 | 0.00 | 0.00 | 0.00 | 4.45 |
159 | 160 | 7.986085 | AGAAATACAACATATACATCCCAGC | 57.014 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
160 | 161 | 7.749666 | AGAAATACAACATATACATCCCAGCT | 58.250 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
161 | 162 | 8.880244 | AGAAATACAACATATACATCCCAGCTA | 58.120 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
162 | 163 | 8.848474 | AAATACAACATATACATCCCAGCTAC | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
163 | 164 | 7.798710 | ATACAACATATACATCCCAGCTACT | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
164 | 165 | 6.500589 | ACAACATATACATCCCAGCTACTT | 57.499 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
165 | 166 | 6.525629 | ACAACATATACATCCCAGCTACTTC | 58.474 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
166 | 167 | 6.327626 | ACAACATATACATCCCAGCTACTTCT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
167 | 168 | 6.597832 | ACATATACATCCCAGCTACTTCTC | 57.402 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
168 | 169 | 5.482175 | ACATATACATCCCAGCTACTTCTCC | 59.518 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
169 | 170 | 1.501582 | ACATCCCAGCTACTTCTCCC | 58.498 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
170 | 171 | 0.761802 | CATCCCAGCTACTTCTCCCC | 59.238 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
171 | 172 | 0.644937 | ATCCCAGCTACTTCTCCCCT | 59.355 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
172 | 173 | 0.417841 | TCCCAGCTACTTCTCCCCTT | 59.582 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
173 | 174 | 0.833949 | CCCAGCTACTTCTCCCCTTC | 59.166 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
174 | 175 | 0.833949 | CCAGCTACTTCTCCCCTTCC | 59.166 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
175 | 176 | 1.573108 | CAGCTACTTCTCCCCTTCCA | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
176 | 177 | 2.122768 | CAGCTACTTCTCCCCTTCCAT | 58.877 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
177 | 178 | 3.309296 | CAGCTACTTCTCCCCTTCCATA | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
178 | 179 | 3.711704 | CAGCTACTTCTCCCCTTCCATAA | 59.288 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
179 | 180 | 4.349342 | CAGCTACTTCTCCCCTTCCATAAT | 59.651 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
180 | 181 | 5.544176 | CAGCTACTTCTCCCCTTCCATAATA | 59.456 | 44.000 | 0.00 | 0.00 | 0.00 | 0.98 |
181 | 182 | 6.214412 | CAGCTACTTCTCCCCTTCCATAATAT | 59.786 | 42.308 | 0.00 | 0.00 | 0.00 | 1.28 |
182 | 183 | 7.400339 | CAGCTACTTCTCCCCTTCCATAATATA | 59.600 | 40.741 | 0.00 | 0.00 | 0.00 | 0.86 |
183 | 184 | 7.962003 | AGCTACTTCTCCCCTTCCATAATATAA | 59.038 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
184 | 185 | 8.603304 | GCTACTTCTCCCCTTCCATAATATAAA | 58.397 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
187 | 188 | 9.015146 | ACTTCTCCCCTTCCATAATATAAAAGT | 57.985 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
242 | 243 | 9.774071 | AAATTTATATTAATGGGATGGAGGGAG | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
243 | 244 | 7.905144 | TTTATATTAATGGGATGGAGGGAGT | 57.095 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
244 | 245 | 8.998957 | TTTATATTAATGGGATGGAGGGAGTA | 57.001 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
245 | 246 | 8.998957 | TTATATTAATGGGATGGAGGGAGTAA | 57.001 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
246 | 247 | 9.588432 | TTATATTAATGGGATGGAGGGAGTAAT | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
248 | 249 | 9.764776 | ATATTAATGGGATGGAGGGAGTAATAT | 57.235 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
249 | 250 | 5.786121 | AATGGGATGGAGGGAGTAATATG | 57.214 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
250 | 251 | 2.912956 | TGGGATGGAGGGAGTAATATGC | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
251 | 252 | 2.912956 | GGGATGGAGGGAGTAATATGCA | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
252 | 253 | 3.054802 | GGGATGGAGGGAGTAATATGCAG | 60.055 | 52.174 | 0.00 | 0.00 | 0.00 | 4.41 |
253 | 254 | 3.584848 | GGATGGAGGGAGTAATATGCAGT | 59.415 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
254 | 255 | 4.042187 | GGATGGAGGGAGTAATATGCAGTT | 59.958 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
255 | 256 | 4.422073 | TGGAGGGAGTAATATGCAGTTG | 57.578 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
256 | 257 | 4.037222 | TGGAGGGAGTAATATGCAGTTGA | 58.963 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
257 | 258 | 4.473196 | TGGAGGGAGTAATATGCAGTTGAA | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
258 | 259 | 5.059833 | GGAGGGAGTAATATGCAGTTGAAG | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
259 | 260 | 5.163301 | GGAGGGAGTAATATGCAGTTGAAGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
260 | 261 | 5.923204 | AGGGAGTAATATGCAGTTGAAGAG | 58.077 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
261 | 262 | 5.059833 | GGGAGTAATATGCAGTTGAAGAGG | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
262 | 263 | 5.059833 | GGAGTAATATGCAGTTGAAGAGGG | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
263 | 264 | 4.455606 | AGTAATATGCAGTTGAAGAGGGC | 58.544 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
264 | 265 | 1.959042 | ATATGCAGTTGAAGAGGGCG | 58.041 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
265 | 266 | 0.901827 | TATGCAGTTGAAGAGGGCGA | 59.098 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
281 | 282 | 1.011463 | CGAGCTGATTGATGCGTGC | 60.011 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
282 | 287 | 1.426816 | CGAGCTGATTGATGCGTGCT | 61.427 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
346 | 351 | 2.133641 | GCTGCACCCACCACCTTTT | 61.134 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
357 | 365 | 3.207778 | CACCACCTTTTGTTTCTACCGA | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
358 | 366 | 3.818773 | CACCACCTTTTGTTTCTACCGAT | 59.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
402 | 410 | 6.608405 | TGCCTGAATTAATGGACAGATCAATT | 59.392 | 34.615 | 14.82 | 0.00 | 32.82 | 2.32 |
403 | 411 | 7.779326 | TGCCTGAATTAATGGACAGATCAATTA | 59.221 | 33.333 | 14.82 | 0.00 | 30.57 | 1.40 |
404 | 412 | 8.295288 | GCCTGAATTAATGGACAGATCAATTAG | 58.705 | 37.037 | 14.82 | 2.70 | 33.15 | 1.73 |
405 | 413 | 9.347240 | CCTGAATTAATGGACAGATCAATTAGT | 57.653 | 33.333 | 14.82 | 0.00 | 33.15 | 2.24 |
422 | 444 | 0.108585 | AGTTCATGCCACTGTCGGTT | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
424 | 446 | 0.948623 | TTCATGCCACTGTCGGTTCG | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
441 | 463 | 2.035530 | TCGAATACACCATGCATGCA | 57.964 | 45.000 | 25.04 | 25.04 | 0.00 | 3.96 |
446 | 468 | 2.323968 | TACACCATGCATGCATACGT | 57.676 | 45.000 | 31.73 | 27.04 | 34.91 | 3.57 |
450 | 472 | 1.939934 | ACCATGCATGCATACGTGTAC | 59.060 | 47.619 | 31.73 | 0.00 | 34.91 | 2.90 |
459 | 481 | 3.713288 | TGCATACGTGTACCTGCTAATC | 58.287 | 45.455 | 0.00 | 0.00 | 35.66 | 1.75 |
460 | 482 | 3.131400 | TGCATACGTGTACCTGCTAATCA | 59.869 | 43.478 | 0.00 | 0.00 | 35.66 | 2.57 |
461 | 483 | 3.736252 | GCATACGTGTACCTGCTAATCAG | 59.264 | 47.826 | 0.00 | 0.00 | 42.49 | 2.90 |
625 | 652 | 1.970917 | GATTGGAACACGAGGCTGCG | 61.971 | 60.000 | 0.00 | 0.00 | 39.29 | 5.18 |
679 | 706 | 0.759060 | ACCACCTTTGTCCTTTGCCC | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
682 | 709 | 1.762370 | CACCTTTGTCCTTTGCCCTTT | 59.238 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
683 | 710 | 2.039418 | ACCTTTGTCCTTTGCCCTTTC | 58.961 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
684 | 711 | 2.319844 | CCTTTGTCCTTTGCCCTTTCT | 58.680 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
685 | 712 | 2.297315 | CCTTTGTCCTTTGCCCTTTCTC | 59.703 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
686 | 713 | 1.995376 | TTGTCCTTTGCCCTTTCTCC | 58.005 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
687 | 714 | 0.112412 | TGTCCTTTGCCCTTTCTCCC | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
688 | 715 | 0.612174 | GTCCTTTGCCCTTTCTCCCC | 60.612 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
689 | 716 | 1.305297 | CCTTTGCCCTTTCTCCCCC | 60.305 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
690 | 717 | 1.464722 | CTTTGCCCTTTCTCCCCCA | 59.535 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
696 | 723 | 2.763902 | CTTTCTCCCCCACCCCAC | 59.236 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
768 | 809 | 1.280457 | ACTCATCCCAGACACCTTCC | 58.720 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
804 | 846 | 1.079127 | CACCCATCCTCGTCACCAC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
908 | 953 | 2.751436 | GCCAGGCAGCCGATTGAA | 60.751 | 61.111 | 6.55 | 0.00 | 0.00 | 2.69 |
910 | 955 | 0.819259 | GCCAGGCAGCCGATTGAATA | 60.819 | 55.000 | 6.55 | 0.00 | 0.00 | 1.75 |
911 | 956 | 0.947244 | CCAGGCAGCCGATTGAATAC | 59.053 | 55.000 | 5.55 | 0.00 | 0.00 | 1.89 |
912 | 957 | 0.583438 | CAGGCAGCCGATTGAATACG | 59.417 | 55.000 | 5.55 | 0.00 | 0.00 | 3.06 |
961 | 1013 | 1.977293 | AATTCTCCCTCTCGCCAGCC | 61.977 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
973 | 1025 | 3.958860 | CCAGCCCCGATCCCCATC | 61.959 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
1368 | 1435 | 0.983378 | AGTACCTGGAGCACCCCATC | 60.983 | 60.000 | 0.00 | 0.00 | 35.33 | 3.51 |
1401 | 1468 | 4.925861 | GAGCTGCTCCCGCCCATC | 62.926 | 72.222 | 18.80 | 0.00 | 34.43 | 3.51 |
1680 | 1750 | 1.381928 | CCAAGCGGCTCGAGTACCTA | 61.382 | 60.000 | 15.13 | 0.00 | 0.00 | 3.08 |
1749 | 1819 | 3.052620 | CTCGTCGCACACCGGATCT | 62.053 | 63.158 | 9.46 | 0.00 | 37.59 | 2.75 |
2441 | 2511 | 1.343142 | GGGTTGGTTGTTTGGATGGAC | 59.657 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2451 | 2521 | 3.054434 | TGTTTGGATGGACTGATGTAGGG | 60.054 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
2461 | 2531 | 0.690192 | TGATGTAGGGTGGTGGTGTG | 59.310 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2462 | 2532 | 0.676782 | GATGTAGGGTGGTGGTGTGC | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2463 | 2533 | 1.422977 | ATGTAGGGTGGTGGTGTGCA | 61.423 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2591 | 2793 | 9.935241 | ATCATTTGTGACATGATACTATACTCC | 57.065 | 33.333 | 0.00 | 0.00 | 39.21 | 3.85 |
2592 | 2794 | 9.147732 | TCATTTGTGACATGATACTATACTCCT | 57.852 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
2595 | 2797 | 9.642343 | TTTGTGACATGATACTATACTCCTACT | 57.358 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2655 | 2857 | 2.428187 | CACGGTGGTGGTGGCTTA | 59.572 | 61.111 | 0.00 | 0.00 | 40.58 | 3.09 |
2728 | 2935 | 2.202932 | CGGCCGATTCAGTCCCAG | 60.203 | 66.667 | 24.07 | 0.00 | 0.00 | 4.45 |
2737 | 2944 | 1.719063 | TTCAGTCCCAGGCAAGCCTT | 61.719 | 55.000 | 11.67 | 0.00 | 45.70 | 4.35 |
2739 | 2946 | 1.075659 | AGTCCCAGGCAAGCCTTTC | 59.924 | 57.895 | 11.67 | 2.48 | 45.70 | 2.62 |
2785 | 3019 | 2.298163 | CCCTTTCTGCATTCACTTTGCT | 59.702 | 45.455 | 0.00 | 0.00 | 40.77 | 3.91 |
2892 | 3131 | 8.370940 | GGACATTGATAGGAATCTGACTTGATA | 58.629 | 37.037 | 0.00 | 0.00 | 32.93 | 2.15 |
2893 | 3132 | 9.202273 | GACATTGATAGGAATCTGACTTGATAC | 57.798 | 37.037 | 0.00 | 0.00 | 32.93 | 2.24 |
2894 | 3133 | 8.708378 | ACATTGATAGGAATCTGACTTGATACA | 58.292 | 33.333 | 0.00 | 0.00 | 32.93 | 2.29 |
2895 | 3134 | 9.722184 | CATTGATAGGAATCTGACTTGATACAT | 57.278 | 33.333 | 0.00 | 0.00 | 32.93 | 2.29 |
2896 | 3135 | 9.941325 | ATTGATAGGAATCTGACTTGATACATC | 57.059 | 33.333 | 0.00 | 0.00 | 32.93 | 3.06 |
2897 | 3136 | 7.597386 | TGATAGGAATCTGACTTGATACATCG | 58.403 | 38.462 | 0.00 | 0.00 | 32.93 | 3.84 |
2915 | 3155 | 2.445427 | TCGGGAACTGTCGGTTACATA | 58.555 | 47.619 | 9.05 | 0.00 | 40.43 | 2.29 |
2985 | 3520 | 6.681777 | ACAAATGATGAGCCTAAACAAAGAC | 58.318 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2990 | 3525 | 2.819608 | TGAGCCTAAACAAAGACATGCC | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
3011 | 3546 | 9.096160 | CATGCCTATGATATAGAGATGTGAAAC | 57.904 | 37.037 | 0.00 | 0.00 | 36.36 | 2.78 |
3014 | 3549 | 8.317679 | GCCTATGATATAGAGATGTGAAACCTT | 58.682 | 37.037 | 0.00 | 0.00 | 34.36 | 3.50 |
3027 | 3562 | 7.607991 | AGATGTGAAACCTTTACGAATGAAGAT | 59.392 | 33.333 | 0.00 | 0.00 | 34.36 | 2.40 |
3029 | 3564 | 6.934645 | TGTGAAACCTTTACGAATGAAGATCT | 59.065 | 34.615 | 0.00 | 0.00 | 34.36 | 2.75 |
3032 | 3567 | 5.677319 | ACCTTTACGAATGAAGATCTGGA | 57.323 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
3097 | 3632 | 8.783093 | TGTACTTCATTTTCGATGAACTTGATT | 58.217 | 29.630 | 0.00 | 0.00 | 34.66 | 2.57 |
3159 | 3694 | 9.807921 | AAAGAGAAATACCAGATAAGAACCAAA | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.28 |
3224 | 3759 | 4.024809 | CGATACGATCAAGCTACTCACTCA | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3278 | 3813 | 0.108329 | CAACCCGGTCTCGCAACTAT | 60.108 | 55.000 | 0.00 | 0.00 | 34.56 | 2.12 |
3299 | 3834 | 3.605634 | TCACCATGAGACCGGTAAAATG | 58.394 | 45.455 | 7.34 | 11.46 | 32.98 | 2.32 |
3306 | 3841 | 3.822167 | TGAGACCGGTAAAATGGAAAACC | 59.178 | 43.478 | 7.34 | 0.00 | 0.00 | 3.27 |
3307 | 3842 | 4.077108 | GAGACCGGTAAAATGGAAAACCT | 58.923 | 43.478 | 7.34 | 0.00 | 0.00 | 3.50 |
3308 | 3843 | 5.221884 | TGAGACCGGTAAAATGGAAAACCTA | 60.222 | 40.000 | 7.34 | 0.00 | 0.00 | 3.08 |
3309 | 3844 | 5.823312 | AGACCGGTAAAATGGAAAACCTAT | 58.177 | 37.500 | 7.34 | 0.00 | 0.00 | 2.57 |
3310 | 3845 | 5.884232 | AGACCGGTAAAATGGAAAACCTATC | 59.116 | 40.000 | 7.34 | 0.00 | 0.00 | 2.08 |
3313 | 3848 | 6.152154 | ACCGGTAAAATGGAAAACCTATCAAG | 59.848 | 38.462 | 4.49 | 0.00 | 0.00 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 5.070580 | AGGGAGTACTAGTATTTGCACATCC | 59.929 | 44.000 | 5.75 | 4.07 | 0.00 | 3.51 |
1 | 2 | 6.163135 | AGGGAGTACTAGTATTTGCACATC | 57.837 | 41.667 | 5.75 | 0.00 | 0.00 | 3.06 |
2 | 3 | 5.070580 | GGAGGGAGTACTAGTATTTGCACAT | 59.929 | 44.000 | 5.75 | 0.00 | 0.00 | 3.21 |
3 | 4 | 4.404715 | GGAGGGAGTACTAGTATTTGCACA | 59.595 | 45.833 | 5.75 | 0.00 | 0.00 | 4.57 |
4 | 5 | 4.499357 | CGGAGGGAGTACTAGTATTTGCAC | 60.499 | 50.000 | 5.75 | 0.00 | 0.00 | 4.57 |
5 | 6 | 3.635373 | CGGAGGGAGTACTAGTATTTGCA | 59.365 | 47.826 | 5.75 | 0.00 | 0.00 | 4.08 |
6 | 7 | 3.635836 | ACGGAGGGAGTACTAGTATTTGC | 59.364 | 47.826 | 5.75 | 3.35 | 0.00 | 3.68 |
7 | 8 | 5.131784 | AGACGGAGGGAGTACTAGTATTTG | 58.868 | 45.833 | 5.75 | 0.00 | 0.00 | 2.32 |
8 | 9 | 5.104193 | TGAGACGGAGGGAGTACTAGTATTT | 60.104 | 44.000 | 5.75 | 0.00 | 0.00 | 1.40 |
9 | 10 | 4.411540 | TGAGACGGAGGGAGTACTAGTATT | 59.588 | 45.833 | 5.75 | 0.94 | 0.00 | 1.89 |
10 | 11 | 3.972638 | TGAGACGGAGGGAGTACTAGTAT | 59.027 | 47.826 | 5.75 | 0.00 | 0.00 | 2.12 |
11 | 12 | 3.378512 | TGAGACGGAGGGAGTACTAGTA | 58.621 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
12 | 13 | 2.194859 | TGAGACGGAGGGAGTACTAGT | 58.805 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
13 | 14 | 3.278668 | TTGAGACGGAGGGAGTACTAG | 57.721 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
14 | 15 | 3.726557 | TTTGAGACGGAGGGAGTACTA | 57.273 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
15 | 16 | 2.599408 | TTTGAGACGGAGGGAGTACT | 57.401 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
16 | 17 | 3.889520 | ATTTTGAGACGGAGGGAGTAC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
17 | 18 | 4.094476 | AGAATTTTGAGACGGAGGGAGTA | 58.906 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
18 | 19 | 2.907042 | AGAATTTTGAGACGGAGGGAGT | 59.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
19 | 20 | 3.618690 | AGAATTTTGAGACGGAGGGAG | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
20 | 21 | 3.072476 | ACAAGAATTTTGAGACGGAGGGA | 59.928 | 43.478 | 7.18 | 0.00 | 0.00 | 4.20 |
21 | 22 | 3.412386 | ACAAGAATTTTGAGACGGAGGG | 58.588 | 45.455 | 7.18 | 0.00 | 0.00 | 4.30 |
22 | 23 | 4.319177 | AGACAAGAATTTTGAGACGGAGG | 58.681 | 43.478 | 7.18 | 0.00 | 0.00 | 4.30 |
23 | 24 | 5.931441 | AAGACAAGAATTTTGAGACGGAG | 57.069 | 39.130 | 7.18 | 0.00 | 0.00 | 4.63 |
24 | 25 | 7.795482 | TTTAAGACAAGAATTTTGAGACGGA | 57.205 | 32.000 | 7.18 | 0.00 | 0.00 | 4.69 |
25 | 26 | 9.463443 | AAATTTAAGACAAGAATTTTGAGACGG | 57.537 | 29.630 | 0.00 | 0.00 | 31.00 | 4.79 |
49 | 50 | 9.817809 | GACCTGATACATCTGTATTTAGACAAA | 57.182 | 33.333 | 4.44 | 0.00 | 40.99 | 2.83 |
50 | 51 | 8.977412 | TGACCTGATACATCTGTATTTAGACAA | 58.023 | 33.333 | 4.44 | 0.00 | 40.99 | 3.18 |
51 | 52 | 8.414003 | GTGACCTGATACATCTGTATTTAGACA | 58.586 | 37.037 | 4.44 | 7.37 | 40.99 | 3.41 |
52 | 53 | 8.414003 | TGTGACCTGATACATCTGTATTTAGAC | 58.586 | 37.037 | 4.44 | 3.17 | 40.99 | 2.59 |
53 | 54 | 8.533569 | TGTGACCTGATACATCTGTATTTAGA | 57.466 | 34.615 | 4.44 | 0.00 | 40.99 | 2.10 |
54 | 55 | 9.770097 | AATGTGACCTGATACATCTGTATTTAG | 57.230 | 33.333 | 4.44 | 6.48 | 40.99 | 1.85 |
56 | 57 | 9.466497 | AAAATGTGACCTGATACATCTGTATTT | 57.534 | 29.630 | 4.44 | 0.00 | 40.99 | 1.40 |
110 | 111 | 9.738832 | CTTCCGTCCTAAAATTTTTGTCTTTTA | 57.261 | 29.630 | 9.06 | 0.00 | 0.00 | 1.52 |
111 | 112 | 8.471609 | TCTTCCGTCCTAAAATTTTTGTCTTTT | 58.528 | 29.630 | 9.06 | 0.00 | 0.00 | 2.27 |
112 | 113 | 8.002984 | TCTTCCGTCCTAAAATTTTTGTCTTT | 57.997 | 30.769 | 9.06 | 0.00 | 0.00 | 2.52 |
113 | 114 | 7.576861 | TCTTCCGTCCTAAAATTTTTGTCTT | 57.423 | 32.000 | 9.06 | 0.00 | 0.00 | 3.01 |
114 | 115 | 7.576861 | TTCTTCCGTCCTAAAATTTTTGTCT | 57.423 | 32.000 | 9.06 | 0.00 | 0.00 | 3.41 |
115 | 116 | 8.812147 | ATTTCTTCCGTCCTAAAATTTTTGTC | 57.188 | 30.769 | 9.06 | 2.40 | 0.00 | 3.18 |
116 | 117 | 9.687210 | GTATTTCTTCCGTCCTAAAATTTTTGT | 57.313 | 29.630 | 9.06 | 0.00 | 0.00 | 2.83 |
117 | 118 | 9.685828 | TGTATTTCTTCCGTCCTAAAATTTTTG | 57.314 | 29.630 | 9.06 | 7.07 | 0.00 | 2.44 |
119 | 120 | 9.687210 | GTTGTATTTCTTCCGTCCTAAAATTTT | 57.313 | 29.630 | 8.75 | 8.75 | 0.00 | 1.82 |
120 | 121 | 8.852135 | TGTTGTATTTCTTCCGTCCTAAAATTT | 58.148 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
121 | 122 | 8.398878 | TGTTGTATTTCTTCCGTCCTAAAATT | 57.601 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
122 | 123 | 7.989416 | TGTTGTATTTCTTCCGTCCTAAAAT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
123 | 124 | 7.989416 | ATGTTGTATTTCTTCCGTCCTAAAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
125 | 126 | 9.754382 | GTATATGTTGTATTTCTTCCGTCCTAA | 57.246 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
126 | 127 | 8.916062 | TGTATATGTTGTATTTCTTCCGTCCTA | 58.084 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
127 | 128 | 7.788026 | TGTATATGTTGTATTTCTTCCGTCCT | 58.212 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
128 | 129 | 8.603242 | ATGTATATGTTGTATTTCTTCCGTCC | 57.397 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
129 | 130 | 8.709646 | GGATGTATATGTTGTATTTCTTCCGTC | 58.290 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
130 | 131 | 7.660208 | GGGATGTATATGTTGTATTTCTTCCGT | 59.340 | 37.037 | 0.00 | 0.00 | 0.00 | 4.69 |
131 | 132 | 7.659799 | TGGGATGTATATGTTGTATTTCTTCCG | 59.340 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
132 | 133 | 8.918202 | TGGGATGTATATGTTGTATTTCTTCC | 57.082 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
133 | 134 | 8.507249 | GCTGGGATGTATATGTTGTATTTCTTC | 58.493 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
134 | 135 | 8.220559 | AGCTGGGATGTATATGTTGTATTTCTT | 58.779 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
135 | 136 | 7.749666 | AGCTGGGATGTATATGTTGTATTTCT | 58.250 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
136 | 137 | 7.986085 | AGCTGGGATGTATATGTTGTATTTC | 57.014 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
137 | 138 | 8.660435 | AGTAGCTGGGATGTATATGTTGTATTT | 58.340 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
138 | 139 | 8.207350 | AGTAGCTGGGATGTATATGTTGTATT | 57.793 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
139 | 140 | 7.798710 | AGTAGCTGGGATGTATATGTTGTAT | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
140 | 141 | 7.509318 | AGAAGTAGCTGGGATGTATATGTTGTA | 59.491 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
141 | 142 | 6.327626 | AGAAGTAGCTGGGATGTATATGTTGT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
142 | 143 | 6.763355 | AGAAGTAGCTGGGATGTATATGTTG | 58.237 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
143 | 144 | 6.014156 | GGAGAAGTAGCTGGGATGTATATGTT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 2.71 |
144 | 145 | 5.482175 | GGAGAAGTAGCTGGGATGTATATGT | 59.518 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
145 | 146 | 5.105146 | GGGAGAAGTAGCTGGGATGTATATG | 60.105 | 48.000 | 0.00 | 0.00 | 0.00 | 1.78 |
146 | 147 | 5.026790 | GGGAGAAGTAGCTGGGATGTATAT | 58.973 | 45.833 | 0.00 | 0.00 | 0.00 | 0.86 |
147 | 148 | 4.417437 | GGGAGAAGTAGCTGGGATGTATA | 58.583 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
148 | 149 | 3.243724 | GGGAGAAGTAGCTGGGATGTAT | 58.756 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
149 | 150 | 2.679082 | GGGAGAAGTAGCTGGGATGTA | 58.321 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
150 | 151 | 1.501582 | GGGAGAAGTAGCTGGGATGT | 58.498 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
151 | 152 | 0.761802 | GGGGAGAAGTAGCTGGGATG | 59.238 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
152 | 153 | 0.644937 | AGGGGAGAAGTAGCTGGGAT | 59.355 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
153 | 154 | 0.417841 | AAGGGGAGAAGTAGCTGGGA | 59.582 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
154 | 155 | 0.833949 | GAAGGGGAGAAGTAGCTGGG | 59.166 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
155 | 156 | 0.833949 | GGAAGGGGAGAAGTAGCTGG | 59.166 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
156 | 157 | 1.573108 | TGGAAGGGGAGAAGTAGCTG | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
157 | 158 | 2.577772 | ATGGAAGGGGAGAAGTAGCT | 57.422 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
158 | 159 | 4.984146 | ATTATGGAAGGGGAGAAGTAGC | 57.016 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
161 | 162 | 9.015146 | ACTTTTATATTATGGAAGGGGAGAAGT | 57.985 | 33.333 | 6.09 | 0.00 | 0.00 | 3.01 |
216 | 217 | 9.774071 | CTCCCTCCATCCCATTAATATAAATTT | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
217 | 218 | 8.915438 | ACTCCCTCCATCCCATTAATATAAATT | 58.085 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
218 | 219 | 8.482378 | ACTCCCTCCATCCCATTAATATAAAT | 57.518 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
219 | 220 | 7.905144 | ACTCCCTCCATCCCATTAATATAAA | 57.095 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
220 | 221 | 8.998957 | TTACTCCCTCCATCCCATTAATATAA | 57.001 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
222 | 223 | 9.764776 | ATATTACTCCCTCCATCCCATTAATAT | 57.235 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
223 | 224 | 9.003145 | CATATTACTCCCTCCATCCCATTAATA | 57.997 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
224 | 225 | 7.586181 | GCATATTACTCCCTCCATCCCATTAAT | 60.586 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
225 | 226 | 6.297010 | GCATATTACTCCCTCCATCCCATTAA | 60.297 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
226 | 227 | 5.191722 | GCATATTACTCCCTCCATCCCATTA | 59.808 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
227 | 228 | 4.018050 | GCATATTACTCCCTCCATCCCATT | 60.018 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
228 | 229 | 3.525199 | GCATATTACTCCCTCCATCCCAT | 59.475 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
229 | 230 | 2.912956 | GCATATTACTCCCTCCATCCCA | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
230 | 231 | 2.912956 | TGCATATTACTCCCTCCATCCC | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
231 | 232 | 3.584848 | ACTGCATATTACTCCCTCCATCC | 59.415 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
232 | 233 | 4.899352 | ACTGCATATTACTCCCTCCATC | 57.101 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
233 | 234 | 4.660303 | TCAACTGCATATTACTCCCTCCAT | 59.340 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
234 | 235 | 4.037222 | TCAACTGCATATTACTCCCTCCA | 58.963 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
235 | 236 | 4.689612 | TCAACTGCATATTACTCCCTCC | 57.310 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
236 | 237 | 5.918608 | TCTTCAACTGCATATTACTCCCTC | 58.081 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
237 | 238 | 5.163258 | CCTCTTCAACTGCATATTACTCCCT | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
238 | 239 | 5.059833 | CCTCTTCAACTGCATATTACTCCC | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
239 | 240 | 5.059833 | CCCTCTTCAACTGCATATTACTCC | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
240 | 241 | 4.513318 | GCCCTCTTCAACTGCATATTACTC | 59.487 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
241 | 242 | 4.455606 | GCCCTCTTCAACTGCATATTACT | 58.544 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
242 | 243 | 3.248602 | CGCCCTCTTCAACTGCATATTAC | 59.751 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
243 | 244 | 3.133901 | TCGCCCTCTTCAACTGCATATTA | 59.866 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
244 | 245 | 2.092968 | TCGCCCTCTTCAACTGCATATT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
245 | 246 | 1.486310 | TCGCCCTCTTCAACTGCATAT | 59.514 | 47.619 | 0.00 | 0.00 | 0.00 | 1.78 |
246 | 247 | 0.901827 | TCGCCCTCTTCAACTGCATA | 59.098 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
247 | 248 | 0.392193 | CTCGCCCTCTTCAACTGCAT | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
248 | 249 | 1.004560 | CTCGCCCTCTTCAACTGCA | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
249 | 250 | 2.394563 | GCTCGCCCTCTTCAACTGC | 61.395 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
250 | 251 | 1.018226 | CAGCTCGCCCTCTTCAACTG | 61.018 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
251 | 252 | 1.188219 | TCAGCTCGCCCTCTTCAACT | 61.188 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
252 | 253 | 0.107945 | ATCAGCTCGCCCTCTTCAAC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
253 | 254 | 0.615331 | AATCAGCTCGCCCTCTTCAA | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
254 | 255 | 0.107993 | CAATCAGCTCGCCCTCTTCA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
255 | 256 | 0.176680 | TCAATCAGCTCGCCCTCTTC | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
256 | 257 | 0.835941 | ATCAATCAGCTCGCCCTCTT | 59.164 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
257 | 258 | 0.106335 | CATCAATCAGCTCGCCCTCT | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
258 | 259 | 1.505477 | GCATCAATCAGCTCGCCCTC | 61.505 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
259 | 260 | 1.525535 | GCATCAATCAGCTCGCCCT | 60.526 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
260 | 261 | 2.890109 | CGCATCAATCAGCTCGCCC | 61.890 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
261 | 262 | 2.176273 | ACGCATCAATCAGCTCGCC | 61.176 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
262 | 263 | 1.011463 | CACGCATCAATCAGCTCGC | 60.011 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
263 | 264 | 1.011463 | GCACGCATCAATCAGCTCG | 60.011 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
264 | 265 | 0.027716 | CAGCACGCATCAATCAGCTC | 59.972 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
265 | 266 | 1.374343 | CCAGCACGCATCAATCAGCT | 61.374 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
292 | 297 | 0.250124 | CCACTTGCAGTCCCGTGTAA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
333 | 338 | 2.543037 | AGAAACAAAAGGTGGTGGGT | 57.457 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
346 | 351 | 3.994392 | GTCAGCAAAGATCGGTAGAAACA | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
357 | 365 | 1.912043 | AGGGCTAGTGTCAGCAAAGAT | 59.088 | 47.619 | 0.00 | 0.00 | 43.67 | 2.40 |
358 | 366 | 1.002430 | CAGGGCTAGTGTCAGCAAAGA | 59.998 | 52.381 | 0.00 | 0.00 | 43.67 | 2.52 |
402 | 410 | 0.973632 | ACCGACAGTGGCATGAACTA | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
403 | 411 | 0.108585 | AACCGACAGTGGCATGAACT | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
404 | 412 | 0.517316 | GAACCGACAGTGGCATGAAC | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
405 | 413 | 0.948623 | CGAACCGACAGTGGCATGAA | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
406 | 414 | 1.374125 | CGAACCGACAGTGGCATGA | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
422 | 444 | 2.035530 | TGCATGCATGGTGTATTCGA | 57.964 | 45.000 | 27.34 | 0.00 | 0.00 | 3.71 |
424 | 446 | 3.250762 | ACGTATGCATGCATGGTGTATTC | 59.749 | 43.478 | 37.43 | 17.66 | 37.82 | 1.75 |
459 | 481 | 3.533606 | AGTACAGGACTGCATTAGCTG | 57.466 | 47.619 | 0.00 | 0.00 | 44.36 | 4.24 |
543 | 570 | 1.795170 | AATTATCATGGCACGGGCGC | 61.795 | 55.000 | 2.17 | 0.00 | 42.47 | 6.53 |
679 | 706 | 2.763902 | GTGGGGTGGGGGAGAAAG | 59.236 | 66.667 | 0.00 | 0.00 | 0.00 | 2.62 |
713 | 740 | 4.277476 | TGACCGGGATGATATTTTTGCTT | 58.723 | 39.130 | 6.32 | 0.00 | 0.00 | 3.91 |
714 | 741 | 3.897239 | TGACCGGGATGATATTTTTGCT | 58.103 | 40.909 | 6.32 | 0.00 | 0.00 | 3.91 |
768 | 809 | 2.158959 | GTCGGACGAGTGAATGCCG | 61.159 | 63.158 | 0.00 | 0.00 | 43.11 | 5.69 |
829 | 873 | 0.712222 | GCGCGTCGTATTTATAGGGC | 59.288 | 55.000 | 8.43 | 0.00 | 0.00 | 5.19 |
858 | 902 | 0.032540 | GTTGCTTTGACTTGGCAGGG | 59.967 | 55.000 | 0.44 | 0.00 | 37.28 | 4.45 |
961 | 1013 | 4.996434 | GCTGCGATGGGGATCGGG | 62.996 | 72.222 | 6.58 | 0.00 | 43.66 | 5.14 |
1368 | 1435 | 1.493950 | GCTCGTCCTTGGCGATCATG | 61.494 | 60.000 | 6.64 | 0.00 | 39.46 | 3.07 |
1572 | 1642 | 2.047179 | GGCTCCACGGTCAAGTCC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1574 | 1644 | 4.681978 | GCGGCTCCACGGTCAAGT | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1680 | 1750 | 2.507944 | GCGGAGATGTCCATGGCT | 59.492 | 61.111 | 6.96 | 0.00 | 44.18 | 4.75 |
1749 | 1819 | 4.287781 | TCGAACGCCGAGCACCAA | 62.288 | 61.111 | 0.00 | 0.00 | 43.23 | 3.67 |
2359 | 2429 | 2.275318 | CAAGTCAATTCCTCTCGCCTC | 58.725 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
2441 | 2511 | 0.984230 | ACACCACCACCCTACATCAG | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2451 | 2521 | 1.675552 | AAACTACTGCACACCACCAC | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2461 | 2531 | 5.353400 | AGCTTATTTCCGGTTAAACTACTGC | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2462 | 2532 | 6.036844 | GGAGCTTATTTCCGGTTAAACTACTG | 59.963 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
2463 | 2533 | 6.111382 | GGAGCTTATTTCCGGTTAAACTACT | 58.889 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2677 | 2879 | 0.865769 | GACCGACACAAAACGCAGAT | 59.134 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2678 | 2880 | 0.460459 | TGACCGACACAAAACGCAGA | 60.460 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2728 | 2935 | 3.752339 | CGGGCAGAAAGGCTTGCC | 61.752 | 66.667 | 18.40 | 18.40 | 45.99 | 4.52 |
2736 | 2943 | 0.457853 | CGACGAGATTCGGGCAGAAA | 60.458 | 55.000 | 3.74 | 0.00 | 45.59 | 2.52 |
2737 | 2944 | 1.138883 | CGACGAGATTCGGGCAGAA | 59.861 | 57.895 | 1.78 | 1.78 | 45.59 | 3.02 |
2739 | 2946 | 0.317103 | CTACGACGAGATTCGGGCAG | 60.317 | 60.000 | 0.00 | 0.00 | 45.59 | 4.85 |
2785 | 3019 | 0.940833 | TTTTCTTGTCGACGCATGCA | 59.059 | 45.000 | 19.57 | 0.00 | 0.00 | 3.96 |
2892 | 3131 | 1.067354 | GTAACCGACAGTTCCCGATGT | 60.067 | 52.381 | 0.00 | 0.00 | 40.05 | 3.06 |
2893 | 3132 | 1.067425 | TGTAACCGACAGTTCCCGATG | 60.067 | 52.381 | 0.00 | 0.00 | 40.05 | 3.84 |
2894 | 3133 | 1.259609 | TGTAACCGACAGTTCCCGAT | 58.740 | 50.000 | 0.00 | 0.00 | 40.05 | 4.18 |
2895 | 3134 | 1.259609 | ATGTAACCGACAGTTCCCGA | 58.740 | 50.000 | 0.00 | 0.00 | 42.79 | 5.14 |
2896 | 3135 | 2.945447 | TATGTAACCGACAGTTCCCG | 57.055 | 50.000 | 0.00 | 0.00 | 42.79 | 5.14 |
2897 | 3136 | 5.945466 | TTTTTATGTAACCGACAGTTCCC | 57.055 | 39.130 | 0.00 | 0.00 | 42.79 | 3.97 |
2985 | 3520 | 9.096160 | GTTTCACATCTCTATATCATAGGCATG | 57.904 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
3011 | 3546 | 7.559590 | AATTCCAGATCTTCATTCGTAAAGG | 57.440 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3014 | 3549 | 9.314321 | GAGTTAATTCCAGATCTTCATTCGTAA | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3060 | 3595 | 8.551205 | TCGAAAATGAAGTACATATGCATCTTC | 58.449 | 33.333 | 19.32 | 19.32 | 38.38 | 2.87 |
3159 | 3694 | 2.927553 | GCATCCTTGCGTCATCTTTT | 57.072 | 45.000 | 0.00 | 0.00 | 39.49 | 2.27 |
3247 | 3782 | 5.667466 | GAGACCGGGTTGTAAGATTGATTA | 58.333 | 41.667 | 6.32 | 0.00 | 0.00 | 1.75 |
3278 | 3813 | 3.605634 | CATTTTACCGGTCTCATGGTGA | 58.394 | 45.455 | 12.40 | 0.00 | 39.30 | 4.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.