Multiple sequence alignment - TraesCS3A01G118600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G118600 chr3A 100.000 5052 0 0 1 5052 90789496 90794547 0.000000e+00 9330.0
1 TraesCS3A01G118600 chr3A 100.000 1763 0 0 5623 7385 90795118 90796880 0.000000e+00 3256.0
2 TraesCS3A01G118600 chr3A 84.685 333 43 7 438 764 141884135 141884465 7.150000e-85 326.0
3 TraesCS3A01G118600 chr3A 90.323 62 5 1 6926 6986 716589610 716589671 6.140000e-11 80.5
4 TraesCS3A01G118600 chr3D 97.940 3593 56 7 1402 4980 75985162 75988750 0.000000e+00 6209.0
5 TraesCS3A01G118600 chr3D 95.710 1795 36 9 5623 7385 75988904 75990689 0.000000e+00 2850.0
6 TraesCS3A01G118600 chr3D 94.485 544 19 7 869 1402 75984555 75985097 0.000000e+00 828.0
7 TraesCS3A01G118600 chr3D 100.000 54 0 0 4999 5052 75988737 75988790 4.710000e-17 100.0
8 TraesCS3A01G118600 chr3D 79.839 124 24 1 195 317 406408181 406408304 1.020000e-13 89.8
9 TraesCS3A01G118600 chr3D 91.667 60 4 1 6931 6989 581512146 581512087 1.710000e-11 82.4
10 TraesCS3A01G118600 chr3B 95.251 3453 121 16 1405 4832 123122093 123125527 0.000000e+00 5428.0
11 TraesCS3A01G118600 chr3B 90.773 1268 66 24 5624 6863 123126176 123127420 0.000000e+00 1646.0
12 TraesCS3A01G118600 chr3B 94.036 503 17 2 902 1403 123121522 123122012 0.000000e+00 750.0
13 TraesCS3A01G118600 chr3B 95.946 148 6 0 4829 4976 123125875 123126022 2.660000e-59 241.0
14 TraesCS3A01G118600 chr3B 100.000 52 0 0 5001 5052 123126011 123126062 6.100000e-16 97.1
15 TraesCS3A01G118600 chr7D 85.924 341 44 4 428 764 606683478 606683138 1.960000e-95 361.0
16 TraesCS3A01G118600 chr7D 84.731 334 44 5 437 764 193991050 193990718 1.990000e-85 327.0
17 TraesCS3A01G118600 chr5B 86.405 331 39 5 437 764 463219750 463219423 2.530000e-94 357.0
18 TraesCS3A01G118600 chr5B 81.982 222 34 6 4361 4578 323708742 323708523 4.550000e-42 183.0
19 TraesCS3A01G118600 chr1D 84.593 344 47 6 429 767 456982 456640 3.300000e-88 337.0
20 TraesCS3A01G118600 chr1D 85.366 82 10 1 4364 4443 267794565 267794484 4.750000e-12 84.2
21 TraesCS3A01G118600 chr7B 84.706 340 46 6 431 764 3362252 3362591 1.190000e-87 335.0
22 TraesCS3A01G118600 chr7B 85.526 76 6 4 164 239 138669349 138669419 2.860000e-09 75.0
23 TraesCS3A01G118600 chr1A 84.071 339 49 5 431 764 581866705 581867043 9.240000e-84 322.0
24 TraesCS3A01G118600 chr1A 85.366 82 10 1 4364 4443 335028624 335028705 4.750000e-12 84.2
25 TraesCS3A01G118600 chr1A 84.524 84 9 3 4364 4444 335028465 335028547 6.140000e-11 80.5
26 TraesCS3A01G118600 chr7A 83.824 340 49 6 431 764 579565754 579566093 1.200000e-82 318.0
27 TraesCS3A01G118600 chr7A 79.204 226 32 11 97 318 561050414 561050200 7.720000e-30 143.0
28 TraesCS3A01G118600 chr7A 81.818 154 23 5 164 317 175872897 175873045 2.800000e-24 124.0
29 TraesCS3A01G118600 chr5A 83.673 343 47 8 428 764 447543108 447542769 1.550000e-81 315.0
30 TraesCS3A01G118600 chr4D 80.693 202 36 3 4435 4636 482704237 482704435 3.570000e-33 154.0
31 TraesCS3A01G118600 chr4B 80.693 202 36 3 4435 4636 612274954 612275152 3.570000e-33 154.0
32 TraesCS3A01G118600 chr4B 100.000 29 0 0 7264 7292 599457541 599457569 4.000000e-03 54.7
33 TraesCS3A01G118600 chr6B 85.542 83 8 3 4364 4443 642971434 642971353 4.750000e-12 84.2
34 TraesCS3A01G118600 chr1B 84.524 84 9 3 4364 4444 345320369 345320451 6.140000e-11 80.5
35 TraesCS3A01G118600 chr1B 84.146 82 11 1 4364 4443 345320529 345320610 2.210000e-10 78.7
36 TraesCS3A01G118600 chr1B 87.879 66 4 3 112 177 136643455 136643516 2.860000e-09 75.0
37 TraesCS3A01G118600 chr5D 94.118 51 3 0 164 214 480753951 480754001 2.210000e-10 78.7
38 TraesCS3A01G118600 chr6D 97.143 35 1 0 6863 6897 1404593 1404627 8.000000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G118600 chr3A 90789496 90796880 7384 False 6293.00 9330 100.00000 1 7385 2 chr3A.!!$F3 7384
1 TraesCS3A01G118600 chr3D 75984555 75990689 6134 False 2496.75 6209 97.03375 869 7385 4 chr3D.!!$F2 6516
2 TraesCS3A01G118600 chr3B 123121522 123127420 5898 False 1632.42 5428 95.20120 902 6863 5 chr3B.!!$F1 5961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.035439 AAGAAACGTCATGGCGGGAT 60.035 50.000 25.37 9.36 35.98 3.85 F
811 812 0.035739 GCCCACTCGTAGTTGGGAAA 59.964 55.000 10.98 0.00 38.20 3.13 F
937 938 0.664466 GCTGCCGGAGAACAAAAAGC 60.664 55.000 5.05 0.00 0.00 3.51 F
1056 1057 1.222113 CCTTTCCCTTCTCTCGGCC 59.778 63.158 0.00 0.00 0.00 6.13 F
1663 1754 1.888512 ACCTTAAACGACTACCAGCGA 59.111 47.619 0.00 0.00 0.00 4.93 F
3045 3154 2.000447 GTCGAGGCATCAAACCTACAC 59.000 52.381 0.00 0.00 37.77 2.90 F
4987 5453 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1754 0.405585 AACACCAAGCTACCAGGCAT 59.594 50.000 0.00 0.0 34.17 4.40 R
1917 2009 2.038426 CCCTCACCTGTGACATGTACAA 59.962 50.000 0.00 0.0 35.46 2.41 R
1967 2059 3.481453 GGTAGGATTTGGATTCAGCTCC 58.519 50.000 0.00 0.0 35.74 4.70 R
2063 2155 3.507233 CACCATGTGCATACTGGAAACTT 59.493 43.478 16.35 0.0 32.68 2.66 R
3188 3297 7.588497 AGAAATGGAATAAATAAGTCTGCCC 57.412 36.000 0.00 0.0 0.00 5.36 R
4993 5459 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.0 0.00 3.82 R
6978 7474 0.035343 GGCCCTTGGAACCTAGACAC 60.035 60.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.832445 TTTCTGGTGGTTGATAAATACTATCTC 57.168 33.333 0.00 0.00 0.00 2.75
59 60 8.783660 TCTGGTGGTTGATAAATACTATCTCT 57.216 34.615 0.00 0.00 0.00 3.10
60 61 8.642432 TCTGGTGGTTGATAAATACTATCTCTG 58.358 37.037 0.00 0.00 0.00 3.35
61 62 8.319057 TGGTGGTTGATAAATACTATCTCTGT 57.681 34.615 0.00 0.00 0.00 3.41
62 63 9.429109 TGGTGGTTGATAAATACTATCTCTGTA 57.571 33.333 0.00 0.00 0.00 2.74
77 78 8.832521 ACTATCTCTGTATGAAACTAGAAGACG 58.167 37.037 0.00 0.00 0.00 4.18
78 79 7.633193 ATCTCTGTATGAAACTAGAAGACGT 57.367 36.000 0.00 0.00 0.00 4.34
79 80 7.450124 TCTCTGTATGAAACTAGAAGACGTT 57.550 36.000 0.00 0.00 0.00 3.99
80 81 7.883217 TCTCTGTATGAAACTAGAAGACGTTT 58.117 34.615 0.00 0.00 36.16 3.60
81 82 8.358148 TCTCTGTATGAAACTAGAAGACGTTTT 58.642 33.333 0.00 0.00 33.82 2.43
82 83 9.622004 CTCTGTATGAAACTAGAAGACGTTTTA 57.378 33.333 0.00 0.00 33.82 1.52
83 84 9.970395 TCTGTATGAAACTAGAAGACGTTTTAA 57.030 29.630 0.00 0.00 33.82 1.52
85 86 9.199982 TGTATGAAACTAGAAGACGTTTTAAGG 57.800 33.333 0.00 0.00 33.82 2.69
86 87 6.535274 TGAAACTAGAAGACGTTTTAAGGC 57.465 37.500 0.00 0.00 33.82 4.35
87 88 6.285990 TGAAACTAGAAGACGTTTTAAGGCT 58.714 36.000 0.00 0.00 33.82 4.58
88 89 7.436118 TGAAACTAGAAGACGTTTTAAGGCTA 58.564 34.615 0.00 0.00 33.82 3.93
89 90 7.927629 TGAAACTAGAAGACGTTTTAAGGCTAA 59.072 33.333 0.00 0.00 33.82 3.09
90 91 8.667076 AAACTAGAAGACGTTTTAAGGCTAAA 57.333 30.769 0.00 0.00 29.65 1.85
91 92 8.843885 AACTAGAAGACGTTTTAAGGCTAAAT 57.156 30.769 0.00 0.00 0.00 1.40
92 93 8.843885 ACTAGAAGACGTTTTAAGGCTAAATT 57.156 30.769 0.00 0.00 0.00 1.82
93 94 9.933723 ACTAGAAGACGTTTTAAGGCTAAATTA 57.066 29.630 0.00 0.00 0.00 1.40
95 96 8.843885 AGAAGACGTTTTAAGGCTAAATTAGT 57.156 30.769 1.68 0.00 0.00 2.24
96 97 9.281371 AGAAGACGTTTTAAGGCTAAATTAGTT 57.719 29.630 1.68 0.00 0.00 2.24
97 98 9.888878 GAAGACGTTTTAAGGCTAAATTAGTTT 57.111 29.630 1.68 0.45 0.00 2.66
124 125 8.854117 AGAAAATAGGATCTTGATAAATGCCAC 58.146 33.333 0.00 0.00 0.00 5.01
125 126 8.537728 AAAATAGGATCTTGATAAATGCCACA 57.462 30.769 0.00 0.00 0.00 4.17
126 127 7.516198 AATAGGATCTTGATAAATGCCACAC 57.484 36.000 0.00 0.00 0.00 3.82
127 128 3.879295 AGGATCTTGATAAATGCCACACG 59.121 43.478 0.00 0.00 0.00 4.49
128 129 3.627577 GGATCTTGATAAATGCCACACGT 59.372 43.478 0.00 0.00 0.00 4.49
129 130 4.496341 GGATCTTGATAAATGCCACACGTG 60.496 45.833 15.48 15.48 0.00 4.49
130 131 3.407698 TCTTGATAAATGCCACACGTGT 58.592 40.909 17.22 17.22 0.00 4.49
131 132 3.188254 TCTTGATAAATGCCACACGTGTG 59.812 43.478 36.13 36.13 45.23 3.82
144 145 4.798152 GTGTGACACGAACGCATG 57.202 55.556 0.00 0.00 0.00 4.06
145 146 1.204062 GTGTGACACGAACGCATGG 59.796 57.895 0.00 0.00 0.00 3.66
146 147 2.173382 GTGACACGAACGCATGGC 59.827 61.111 0.00 0.00 0.00 4.40
147 148 2.280457 TGACACGAACGCATGGCA 60.280 55.556 0.00 0.00 0.00 4.92
148 149 1.889573 TGACACGAACGCATGGCAA 60.890 52.632 0.00 0.00 28.30 4.52
149 150 1.440353 GACACGAACGCATGGCAAC 60.440 57.895 0.00 0.00 0.00 4.17
150 151 1.841663 GACACGAACGCATGGCAACT 61.842 55.000 0.00 0.00 37.61 3.16
151 152 1.154413 CACGAACGCATGGCAACTC 60.154 57.895 0.00 0.00 37.61 3.01
152 153 2.325082 ACGAACGCATGGCAACTCC 61.325 57.895 0.00 0.00 37.61 3.85
153 154 2.480555 GAACGCATGGCAACTCCG 59.519 61.111 0.00 0.00 37.80 4.63
154 155 2.031919 AACGCATGGCAACTCCGA 59.968 55.556 0.00 0.00 37.80 4.55
155 156 1.573829 GAACGCATGGCAACTCCGAA 61.574 55.000 0.00 0.00 37.80 4.30
156 157 0.960364 AACGCATGGCAACTCCGAAT 60.960 50.000 0.00 0.00 37.80 3.34
157 158 1.063006 CGCATGGCAACTCCGAATG 59.937 57.895 0.00 0.00 37.80 2.67
158 159 1.647545 CGCATGGCAACTCCGAATGT 61.648 55.000 0.00 0.00 37.80 2.71
159 160 0.527565 GCATGGCAACTCCGAATGTT 59.472 50.000 0.00 0.00 37.80 2.71
160 161 1.067635 GCATGGCAACTCCGAATGTTT 60.068 47.619 0.00 0.00 37.80 2.83
161 162 2.610232 GCATGGCAACTCCGAATGTTTT 60.610 45.455 0.00 0.00 37.80 2.43
162 163 3.652274 CATGGCAACTCCGAATGTTTTT 58.348 40.909 0.00 0.00 37.80 1.94
163 164 4.804108 CATGGCAACTCCGAATGTTTTTA 58.196 39.130 0.00 0.00 37.80 1.52
164 165 5.410067 CATGGCAACTCCGAATGTTTTTAT 58.590 37.500 0.00 0.00 37.80 1.40
165 166 4.804108 TGGCAACTCCGAATGTTTTTATG 58.196 39.130 0.00 0.00 37.80 1.90
166 167 4.173256 GGCAACTCCGAATGTTTTTATGG 58.827 43.478 0.00 0.00 0.00 2.74
167 168 3.612423 GCAACTCCGAATGTTTTTATGGC 59.388 43.478 0.00 0.00 0.00 4.40
168 169 4.804108 CAACTCCGAATGTTTTTATGGCA 58.196 39.130 0.00 0.00 0.00 4.92
169 170 5.226396 CAACTCCGAATGTTTTTATGGCAA 58.774 37.500 0.00 0.00 0.00 4.52
170 171 4.805219 ACTCCGAATGTTTTTATGGCAAC 58.195 39.130 0.00 0.00 0.00 4.17
171 172 4.522789 ACTCCGAATGTTTTTATGGCAACT 59.477 37.500 0.00 0.00 37.61 3.16
172 173 5.010617 ACTCCGAATGTTTTTATGGCAACTT 59.989 36.000 0.00 0.00 37.61 2.66
173 174 5.848406 TCCGAATGTTTTTATGGCAACTTT 58.152 33.333 0.00 0.00 37.61 2.66
174 175 6.982852 TCCGAATGTTTTTATGGCAACTTTA 58.017 32.000 0.00 0.00 37.61 1.85
175 176 7.087639 TCCGAATGTTTTTATGGCAACTTTAG 58.912 34.615 0.00 0.00 37.61 1.85
176 177 6.866248 CCGAATGTTTTTATGGCAACTTTAGT 59.134 34.615 0.00 0.00 37.61 2.24
177 178 7.383843 CCGAATGTTTTTATGGCAACTTTAGTT 59.616 33.333 0.00 0.00 39.12 2.24
178 179 9.400638 CGAATGTTTTTATGGCAACTTTAGTTA 57.599 29.630 0.00 0.00 36.32 2.24
184 185 8.980143 TTTTATGGCAACTTTAGTTATGAAGC 57.020 30.769 0.00 0.00 36.32 3.86
185 186 7.695480 TTATGGCAACTTTAGTTATGAAGCA 57.305 32.000 0.00 0.00 36.32 3.91
186 187 6.780457 ATGGCAACTTTAGTTATGAAGCAT 57.220 33.333 0.00 0.00 36.32 3.79
187 188 5.953183 TGGCAACTTTAGTTATGAAGCATG 58.047 37.500 0.00 0.00 36.32 4.06
188 189 5.476599 TGGCAACTTTAGTTATGAAGCATGT 59.523 36.000 0.00 0.00 36.32 3.21
189 190 6.030228 GGCAACTTTAGTTATGAAGCATGTC 58.970 40.000 0.00 0.00 36.32 3.06
190 191 6.349280 GGCAACTTTAGTTATGAAGCATGTCA 60.349 38.462 0.00 0.00 36.32 3.58
191 192 7.083858 GCAACTTTAGTTATGAAGCATGTCAA 58.916 34.615 0.00 0.00 36.32 3.18
192 193 7.756722 GCAACTTTAGTTATGAAGCATGTCAAT 59.243 33.333 0.00 0.00 36.32 2.57
193 194 9.630098 CAACTTTAGTTATGAAGCATGTCAATT 57.370 29.630 0.00 0.00 36.32 2.32
198 199 9.844790 TTAGTTATGAAGCATGTCAATTTTCTG 57.155 29.630 0.00 0.00 0.00 3.02
199 200 7.889469 AGTTATGAAGCATGTCAATTTTCTGT 58.111 30.769 0.00 0.00 0.00 3.41
200 201 8.362639 AGTTATGAAGCATGTCAATTTTCTGTT 58.637 29.630 0.00 0.00 0.00 3.16
201 202 8.642020 GTTATGAAGCATGTCAATTTTCTGTTC 58.358 33.333 0.00 0.00 0.00 3.18
202 203 5.214417 TGAAGCATGTCAATTTTCTGTTCG 58.786 37.500 0.00 0.00 0.00 3.95
203 204 4.164822 AGCATGTCAATTTTCTGTTCGG 57.835 40.909 0.00 0.00 0.00 4.30
204 205 3.820467 AGCATGTCAATTTTCTGTTCGGA 59.180 39.130 0.00 0.00 0.00 4.55
205 206 4.460382 AGCATGTCAATTTTCTGTTCGGAT 59.540 37.500 0.00 0.00 0.00 4.18
206 207 4.560035 GCATGTCAATTTTCTGTTCGGATG 59.440 41.667 0.00 0.00 0.00 3.51
207 208 4.764679 TGTCAATTTTCTGTTCGGATGG 57.235 40.909 0.00 0.00 0.00 3.51
208 209 3.057596 TGTCAATTTTCTGTTCGGATGGC 60.058 43.478 0.00 0.00 0.00 4.40
209 210 3.057596 GTCAATTTTCTGTTCGGATGGCA 60.058 43.478 0.00 0.00 0.00 4.92
210 211 3.571828 TCAATTTTCTGTTCGGATGGCAA 59.428 39.130 0.00 0.00 0.00 4.52
211 212 3.855689 ATTTTCTGTTCGGATGGCAAG 57.144 42.857 0.00 0.00 0.00 4.01
212 213 2.270352 TTTCTGTTCGGATGGCAAGT 57.730 45.000 0.00 0.00 0.00 3.16
213 214 2.270352 TTCTGTTCGGATGGCAAGTT 57.730 45.000 0.00 0.00 0.00 2.66
214 215 2.270352 TCTGTTCGGATGGCAAGTTT 57.730 45.000 0.00 0.00 0.00 2.66
215 216 2.151202 TCTGTTCGGATGGCAAGTTTC 58.849 47.619 0.00 0.00 0.00 2.78
216 217 2.154462 CTGTTCGGATGGCAAGTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
217 218 1.879380 TGTTCGGATGGCAAGTTTCTG 59.121 47.619 0.00 0.00 0.00 3.02
218 219 1.880027 GTTCGGATGGCAAGTTTCTGT 59.120 47.619 0.00 0.00 0.00 3.41
219 220 2.270352 TCGGATGGCAAGTTTCTGTT 57.730 45.000 0.00 0.00 0.00 3.16
220 221 2.582052 TCGGATGGCAAGTTTCTGTTT 58.418 42.857 0.00 0.00 0.00 2.83
221 222 2.955660 TCGGATGGCAAGTTTCTGTTTT 59.044 40.909 0.00 0.00 0.00 2.43
222 223 3.383185 TCGGATGGCAAGTTTCTGTTTTT 59.617 39.130 0.00 0.00 0.00 1.94
260 261 8.433421 TTTTCTTTTCGACTGACATCTTTAGT 57.567 30.769 0.00 0.00 0.00 2.24
261 262 7.639162 TTCTTTTCGACTGACATCTTTAGTC 57.361 36.000 0.00 0.00 37.93 2.59
279 280 3.850207 CGTAAGAAACGTCATGGCG 57.150 52.632 19.93 19.93 46.72 5.69
280 281 0.368907 CGTAAGAAACGTCATGGCGG 59.631 55.000 25.37 6.12 46.72 6.13
281 282 0.725117 GTAAGAAACGTCATGGCGGG 59.275 55.000 25.37 0.00 35.98 6.13
282 283 0.609151 TAAGAAACGTCATGGCGGGA 59.391 50.000 25.37 0.00 35.98 5.14
283 284 0.035439 AAGAAACGTCATGGCGGGAT 60.035 50.000 25.37 9.36 35.98 3.85
284 285 0.035439 AGAAACGTCATGGCGGGATT 60.035 50.000 25.37 15.50 35.98 3.01
285 286 1.208535 AGAAACGTCATGGCGGGATTA 59.791 47.619 25.37 0.00 35.98 1.75
286 287 1.329599 GAAACGTCATGGCGGGATTAC 59.670 52.381 25.37 5.33 35.98 1.89
287 288 0.539986 AACGTCATGGCGGGATTACT 59.460 50.000 25.37 0.00 35.98 2.24
288 289 0.539986 ACGTCATGGCGGGATTACTT 59.460 50.000 25.37 0.00 35.98 2.24
289 290 1.217882 CGTCATGGCGGGATTACTTC 58.782 55.000 12.98 0.00 0.00 3.01
290 291 1.217882 GTCATGGCGGGATTACTTCG 58.782 55.000 0.00 0.00 0.00 3.79
291 292 0.828022 TCATGGCGGGATTACTTCGT 59.172 50.000 0.00 0.00 0.00 3.85
292 293 1.208535 TCATGGCGGGATTACTTCGTT 59.791 47.619 0.00 0.00 0.00 3.85
293 294 1.597663 CATGGCGGGATTACTTCGTTC 59.402 52.381 0.00 0.00 0.00 3.95
294 295 0.108041 TGGCGGGATTACTTCGTTCC 60.108 55.000 0.00 0.00 0.00 3.62
295 296 0.108041 GGCGGGATTACTTCGTTCCA 60.108 55.000 0.00 0.00 0.00 3.53
296 297 1.004595 GCGGGATTACTTCGTTCCAC 58.995 55.000 0.00 0.00 0.00 4.02
297 298 1.673626 GCGGGATTACTTCGTTCCACA 60.674 52.381 0.00 0.00 0.00 4.17
298 299 1.997606 CGGGATTACTTCGTTCCACAC 59.002 52.381 0.00 0.00 0.00 3.82
299 300 2.610976 CGGGATTACTTCGTTCCACACA 60.611 50.000 0.00 0.00 0.00 3.72
300 301 3.606687 GGGATTACTTCGTTCCACACAT 58.393 45.455 0.00 0.00 0.00 3.21
301 302 3.374058 GGGATTACTTCGTTCCACACATG 59.626 47.826 0.00 0.00 0.00 3.21
302 303 4.000988 GGATTACTTCGTTCCACACATGT 58.999 43.478 0.00 0.00 0.00 3.21
303 304 4.142902 GGATTACTTCGTTCCACACATGTG 60.143 45.833 24.25 24.25 45.23 3.21
342 343 7.639113 AAAATATTTTGATACGGAGGAAGCA 57.361 32.000 12.62 0.00 0.00 3.91
343 344 6.867662 AATATTTTGATACGGAGGAAGCAG 57.132 37.500 0.00 0.00 0.00 4.24
344 345 3.973206 TTTTGATACGGAGGAAGCAGA 57.027 42.857 0.00 0.00 0.00 4.26
345 346 4.487714 TTTTGATACGGAGGAAGCAGAT 57.512 40.909 0.00 0.00 0.00 2.90
346 347 5.607939 TTTTGATACGGAGGAAGCAGATA 57.392 39.130 0.00 0.00 0.00 1.98
347 348 4.855715 TTGATACGGAGGAAGCAGATAG 57.144 45.455 0.00 0.00 0.00 2.08
348 349 4.100279 TGATACGGAGGAAGCAGATAGA 57.900 45.455 0.00 0.00 0.00 1.98
349 350 4.470602 TGATACGGAGGAAGCAGATAGAA 58.529 43.478 0.00 0.00 0.00 2.10
350 351 4.520874 TGATACGGAGGAAGCAGATAGAAG 59.479 45.833 0.00 0.00 0.00 2.85
351 352 3.019799 ACGGAGGAAGCAGATAGAAGA 57.980 47.619 0.00 0.00 0.00 2.87
352 353 3.571590 ACGGAGGAAGCAGATAGAAGAT 58.428 45.455 0.00 0.00 0.00 2.40
353 354 4.730966 ACGGAGGAAGCAGATAGAAGATA 58.269 43.478 0.00 0.00 0.00 1.98
354 355 5.141182 ACGGAGGAAGCAGATAGAAGATAA 58.859 41.667 0.00 0.00 0.00 1.75
355 356 5.598830 ACGGAGGAAGCAGATAGAAGATAAA 59.401 40.000 0.00 0.00 0.00 1.40
356 357 6.098409 ACGGAGGAAGCAGATAGAAGATAAAA 59.902 38.462 0.00 0.00 0.00 1.52
357 358 6.986817 CGGAGGAAGCAGATAGAAGATAAAAA 59.013 38.462 0.00 0.00 0.00 1.94
383 384 7.856145 AATAAAGTCAAGTCTAAGAGCATGG 57.144 36.000 0.00 0.00 0.00 3.66
384 385 5.489792 AAAGTCAAGTCTAAGAGCATGGA 57.510 39.130 0.00 0.00 0.00 3.41
385 386 5.489792 AAGTCAAGTCTAAGAGCATGGAA 57.510 39.130 0.00 0.00 0.00 3.53
386 387 5.083533 AGTCAAGTCTAAGAGCATGGAAG 57.916 43.478 0.00 0.00 0.00 3.46
387 388 4.081198 AGTCAAGTCTAAGAGCATGGAAGG 60.081 45.833 0.00 0.00 0.00 3.46
388 389 4.081420 GTCAAGTCTAAGAGCATGGAAGGA 60.081 45.833 0.00 0.00 0.00 3.36
389 390 4.532126 TCAAGTCTAAGAGCATGGAAGGAA 59.468 41.667 0.00 0.00 0.00 3.36
390 391 4.479786 AGTCTAAGAGCATGGAAGGAAC 57.520 45.455 0.00 0.00 0.00 3.62
427 428 9.490083 AAGTAAGAATATAGGAGTGGTGTAGTT 57.510 33.333 0.00 0.00 0.00 2.24
428 429 8.915036 AGTAAGAATATAGGAGTGGTGTAGTTG 58.085 37.037 0.00 0.00 0.00 3.16
429 430 6.732896 AGAATATAGGAGTGGTGTAGTTGG 57.267 41.667 0.00 0.00 0.00 3.77
430 431 5.602978 AGAATATAGGAGTGGTGTAGTTGGG 59.397 44.000 0.00 0.00 0.00 4.12
431 432 3.484953 ATAGGAGTGGTGTAGTTGGGA 57.515 47.619 0.00 0.00 0.00 4.37
432 433 2.112279 AGGAGTGGTGTAGTTGGGAA 57.888 50.000 0.00 0.00 0.00 3.97
433 434 1.978580 AGGAGTGGTGTAGTTGGGAAG 59.021 52.381 0.00 0.00 0.00 3.46
434 435 1.610886 GGAGTGGTGTAGTTGGGAAGC 60.611 57.143 0.00 0.00 0.00 3.86
435 436 1.071699 GAGTGGTGTAGTTGGGAAGCA 59.928 52.381 0.00 0.00 0.00 3.91
436 437 1.202770 AGTGGTGTAGTTGGGAAGCAC 60.203 52.381 0.00 0.00 40.45 4.40
437 438 0.840617 TGGTGTAGTTGGGAAGCACA 59.159 50.000 0.00 0.00 0.00 4.57
438 439 1.423541 TGGTGTAGTTGGGAAGCACAT 59.576 47.619 0.00 0.00 0.00 3.21
439 440 2.640332 TGGTGTAGTTGGGAAGCACATA 59.360 45.455 0.00 0.00 0.00 2.29
440 441 3.270877 GGTGTAGTTGGGAAGCACATAG 58.729 50.000 0.00 0.00 0.00 2.23
441 442 3.055385 GGTGTAGTTGGGAAGCACATAGA 60.055 47.826 0.00 0.00 0.00 1.98
442 443 4.384208 GGTGTAGTTGGGAAGCACATAGAT 60.384 45.833 0.00 0.00 0.00 1.98
443 444 4.572389 GTGTAGTTGGGAAGCACATAGATG 59.428 45.833 0.00 0.00 0.00 2.90
444 445 4.469586 TGTAGTTGGGAAGCACATAGATGA 59.530 41.667 0.00 0.00 0.00 2.92
445 446 4.574674 AGTTGGGAAGCACATAGATGAA 57.425 40.909 0.00 0.00 0.00 2.57
446 447 5.121380 AGTTGGGAAGCACATAGATGAAT 57.879 39.130 0.00 0.00 0.00 2.57
447 448 5.128919 AGTTGGGAAGCACATAGATGAATC 58.871 41.667 0.00 0.00 0.00 2.52
448 449 4.776435 TGGGAAGCACATAGATGAATCA 57.224 40.909 0.00 0.00 0.00 2.57
449 450 4.711399 TGGGAAGCACATAGATGAATCAG 58.289 43.478 0.00 0.00 0.00 2.90
450 451 4.070716 GGGAAGCACATAGATGAATCAGG 58.929 47.826 0.00 0.00 0.00 3.86
451 452 4.070716 GGAAGCACATAGATGAATCAGGG 58.929 47.826 0.00 0.00 0.00 4.45
452 453 4.445448 GGAAGCACATAGATGAATCAGGGT 60.445 45.833 0.00 0.00 0.00 4.34
453 454 5.221722 GGAAGCACATAGATGAATCAGGGTA 60.222 44.000 0.00 0.00 0.00 3.69
454 455 5.220710 AGCACATAGATGAATCAGGGTAC 57.779 43.478 0.00 0.00 0.00 3.34
455 456 4.655649 AGCACATAGATGAATCAGGGTACA 59.344 41.667 0.00 0.00 0.00 2.90
456 457 5.309020 AGCACATAGATGAATCAGGGTACAT 59.691 40.000 0.00 0.00 0.00 2.29
457 458 6.498303 AGCACATAGATGAATCAGGGTACATA 59.502 38.462 0.00 0.00 0.00 2.29
458 459 7.181665 AGCACATAGATGAATCAGGGTACATAT 59.818 37.037 0.00 0.00 0.00 1.78
459 460 7.279536 GCACATAGATGAATCAGGGTACATATG 59.720 40.741 0.00 0.00 0.00 1.78
460 461 8.534496 CACATAGATGAATCAGGGTACATATGA 58.466 37.037 10.38 0.00 0.00 2.15
461 462 9.104713 ACATAGATGAATCAGGGTACATATGAA 57.895 33.333 10.38 0.00 0.00 2.57
462 463 9.376075 CATAGATGAATCAGGGTACATATGAAC 57.624 37.037 10.38 0.00 0.00 3.18
463 464 6.773638 AGATGAATCAGGGTACATATGAACC 58.226 40.000 10.38 8.23 34.85 3.62
473 474 6.827586 GGTACATATGAACCCACTTTGAAA 57.172 37.500 10.38 0.00 0.00 2.69
474 475 7.222000 GGTACATATGAACCCACTTTGAAAA 57.778 36.000 10.38 0.00 0.00 2.29
475 476 7.662897 GGTACATATGAACCCACTTTGAAAAA 58.337 34.615 10.38 0.00 0.00 1.94
476 477 7.597369 GGTACATATGAACCCACTTTGAAAAAC 59.403 37.037 10.38 0.00 0.00 2.43
477 478 7.118496 ACATATGAACCCACTTTGAAAAACA 57.882 32.000 10.38 0.00 0.00 2.83
478 479 7.734942 ACATATGAACCCACTTTGAAAAACAT 58.265 30.769 10.38 0.00 0.00 2.71
479 480 8.865090 ACATATGAACCCACTTTGAAAAACATA 58.135 29.630 10.38 0.00 0.00 2.29
480 481 9.874205 CATATGAACCCACTTTGAAAAACATAT 57.126 29.630 0.00 0.00 0.00 1.78
483 484 9.625747 ATGAACCCACTTTGAAAAACATATTTT 57.374 25.926 0.00 0.00 39.81 1.82
517 518 6.622833 AAAAATCTGAAAAAGGTTGCATGG 57.377 33.333 0.00 0.00 0.00 3.66
518 519 4.961438 AATCTGAAAAAGGTTGCATGGT 57.039 36.364 0.00 0.00 0.00 3.55
519 520 6.418057 AAATCTGAAAAAGGTTGCATGGTA 57.582 33.333 0.00 0.00 0.00 3.25
520 521 4.846779 TCTGAAAAAGGTTGCATGGTAC 57.153 40.909 0.00 0.00 0.00 3.34
521 522 3.252215 TCTGAAAAAGGTTGCATGGTACG 59.748 43.478 0.00 0.00 0.00 3.67
522 523 2.952978 TGAAAAAGGTTGCATGGTACGT 59.047 40.909 0.00 0.00 0.00 3.57
523 524 3.003897 TGAAAAAGGTTGCATGGTACGTC 59.996 43.478 0.00 0.00 0.00 4.34
524 525 2.561478 AAAGGTTGCATGGTACGTCT 57.439 45.000 0.00 0.00 0.00 4.18
525 526 2.094762 AAGGTTGCATGGTACGTCTC 57.905 50.000 0.00 0.00 0.00 3.36
526 527 0.249398 AGGTTGCATGGTACGTCTCC 59.751 55.000 0.00 0.00 0.00 3.71
527 528 0.036765 GGTTGCATGGTACGTCTCCA 60.037 55.000 13.46 13.46 39.41 3.86
528 529 1.076332 GTTGCATGGTACGTCTCCAC 58.924 55.000 13.38 4.49 37.81 4.02
539 540 2.503943 CGTCTCCACGTTTTATGTGC 57.496 50.000 0.00 0.00 41.42 4.57
540 541 1.201769 CGTCTCCACGTTTTATGTGCG 60.202 52.381 0.00 0.00 41.42 5.34
541 542 1.796459 GTCTCCACGTTTTATGTGCGT 59.204 47.619 0.00 0.00 39.59 5.24
544 545 3.446365 CACGTTTTATGTGCGTGCA 57.554 47.368 3.46 0.00 46.86 4.57
545 546 1.962412 CACGTTTTATGTGCGTGCAT 58.038 45.000 0.00 0.12 46.86 3.96
546 547 3.110593 CACGTTTTATGTGCGTGCATA 57.889 42.857 0.00 0.00 46.86 3.14
547 548 3.483734 CACGTTTTATGTGCGTGCATAA 58.516 40.909 0.00 8.87 46.86 1.90
548 549 3.908978 CACGTTTTATGTGCGTGCATAAA 59.091 39.130 16.73 16.73 46.86 1.40
549 550 4.028977 CACGTTTTATGTGCGTGCATAAAG 59.971 41.667 18.54 13.80 45.91 1.85
550 551 4.155449 CGTTTTATGTGCGTGCATAAAGT 58.845 39.130 18.54 0.00 45.91 2.66
551 552 4.615121 CGTTTTATGTGCGTGCATAAAGTT 59.385 37.500 18.54 0.00 45.91 2.66
552 553 5.116377 CGTTTTATGTGCGTGCATAAAGTTT 59.884 36.000 18.54 0.00 45.91 2.66
553 554 6.513317 GTTTTATGTGCGTGCATAAAGTTTC 58.487 36.000 18.54 11.50 45.91 2.78
554 555 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
555 556 3.913548 TGTGCGTGCATAAAGTTTCAT 57.086 38.095 0.00 0.00 0.00 2.57
556 557 3.563508 TGTGCGTGCATAAAGTTTCATG 58.436 40.909 0.00 0.00 0.00 3.07
557 558 2.916716 GTGCGTGCATAAAGTTTCATGG 59.083 45.455 0.00 0.00 0.00 3.66
558 559 2.094803 TGCGTGCATAAAGTTTCATGGG 60.095 45.455 0.00 0.00 0.00 4.00
559 560 2.163412 GCGTGCATAAAGTTTCATGGGA 59.837 45.455 0.00 0.00 0.00 4.37
560 561 3.366883 GCGTGCATAAAGTTTCATGGGAA 60.367 43.478 0.00 0.00 0.00 3.97
561 562 4.804108 CGTGCATAAAGTTTCATGGGAAA 58.196 39.130 0.00 0.00 40.60 3.13
562 563 5.226396 CGTGCATAAAGTTTCATGGGAAAA 58.774 37.500 0.00 0.00 44.18 2.29
563 564 5.868801 CGTGCATAAAGTTTCATGGGAAAAT 59.131 36.000 0.00 0.00 44.18 1.82
564 565 7.032580 CGTGCATAAAGTTTCATGGGAAAATA 58.967 34.615 0.00 0.00 44.18 1.40
565 566 7.543868 CGTGCATAAAGTTTCATGGGAAAATAA 59.456 33.333 0.00 0.00 44.18 1.40
566 567 9.382275 GTGCATAAAGTTTCATGGGAAAATAAT 57.618 29.630 0.00 0.00 44.18 1.28
567 568 9.381033 TGCATAAAGTTTCATGGGAAAATAATG 57.619 29.630 0.00 0.00 44.18 1.90
568 569 8.337532 GCATAAAGTTTCATGGGAAAATAATGC 58.662 33.333 15.47 15.47 44.21 3.56
569 570 9.603921 CATAAAGTTTCATGGGAAAATAATGCT 57.396 29.630 0.00 0.00 44.18 3.79
571 572 8.922931 AAAGTTTCATGGGAAAATAATGCTTT 57.077 26.923 0.00 0.00 44.18 3.51
574 575 9.603921 AGTTTCATGGGAAAATAATGCTTTATG 57.396 29.630 5.68 0.00 44.18 1.90
575 576 9.598517 GTTTCATGGGAAAATAATGCTTTATGA 57.401 29.630 5.68 0.00 44.18 2.15
576 577 9.598517 TTTCATGGGAAAATAATGCTTTATGAC 57.401 29.630 5.68 1.80 39.96 3.06
577 578 8.303780 TCATGGGAAAATAATGCTTTATGACA 57.696 30.769 5.68 2.65 0.00 3.58
578 579 8.926374 TCATGGGAAAATAATGCTTTATGACAT 58.074 29.630 5.68 0.00 0.00 3.06
579 580 8.984764 CATGGGAAAATAATGCTTTATGACATG 58.015 33.333 5.68 10.92 0.00 3.21
580 581 8.076910 TGGGAAAATAATGCTTTATGACATGT 57.923 30.769 0.00 0.00 0.00 3.21
581 582 7.980662 TGGGAAAATAATGCTTTATGACATGTG 59.019 33.333 1.15 0.00 0.00 3.21
582 583 7.042523 GGGAAAATAATGCTTTATGACATGTGC 60.043 37.037 1.15 0.00 0.00 4.57
583 584 7.042523 GGAAAATAATGCTTTATGACATGTGCC 60.043 37.037 1.15 0.00 0.00 5.01
584 585 6.468333 AATAATGCTTTATGACATGTGCCA 57.532 33.333 1.15 0.00 0.00 4.92
585 586 4.804868 AATGCTTTATGACATGTGCCAA 57.195 36.364 1.15 0.00 0.00 4.52
586 587 4.804868 ATGCTTTATGACATGTGCCAAA 57.195 36.364 1.15 0.00 0.00 3.28
587 588 4.597404 TGCTTTATGACATGTGCCAAAA 57.403 36.364 1.15 0.00 0.00 2.44
588 589 4.558178 TGCTTTATGACATGTGCCAAAAG 58.442 39.130 1.15 8.90 0.00 2.27
589 590 3.928375 GCTTTATGACATGTGCCAAAAGG 59.072 43.478 1.15 0.00 0.00 3.11
590 591 4.321899 GCTTTATGACATGTGCCAAAAGGA 60.322 41.667 1.15 0.00 0.00 3.36
591 592 4.782019 TTATGACATGTGCCAAAAGGAC 57.218 40.909 1.15 0.00 37.33 3.85
664 665 3.569250 GCGGAGGCAAATAAAAAGACA 57.431 42.857 0.00 0.00 39.62 3.41
665 666 4.110036 GCGGAGGCAAATAAAAAGACAT 57.890 40.909 0.00 0.00 39.62 3.06
666 667 4.494484 GCGGAGGCAAATAAAAAGACATT 58.506 39.130 0.00 0.00 39.62 2.71
667 668 4.929211 GCGGAGGCAAATAAAAAGACATTT 59.071 37.500 0.00 0.00 39.62 2.32
668 669 5.408299 GCGGAGGCAAATAAAAAGACATTTT 59.592 36.000 0.00 0.00 40.73 1.82
669 670 6.073276 GCGGAGGCAAATAAAAAGACATTTTT 60.073 34.615 4.35 4.35 43.55 1.94
689 690 4.942090 ACAAAATCTTGTGCCGCG 57.058 50.000 0.00 0.00 44.28 6.46
690 691 1.371635 ACAAAATCTTGTGCCGCGC 60.372 52.632 0.00 0.00 44.28 6.86
691 692 1.371512 CAAAATCTTGTGCCGCGCA 60.372 52.632 8.75 1.51 35.60 6.09
700 701 3.584618 TGCCGCGCACACATATTT 58.415 50.000 8.75 0.00 31.71 1.40
701 702 1.136356 TGCCGCGCACACATATTTG 59.864 52.632 8.75 0.00 31.71 2.32
702 703 2.223549 GCCGCGCACACATATTTGC 61.224 57.895 8.75 0.00 35.26 3.68
710 711 3.500982 GCACACATATTTGCGAACATGT 58.499 40.909 4.68 4.68 31.91 3.21
711 712 4.657055 GCACACATATTTGCGAACATGTA 58.343 39.130 10.26 0.00 30.66 2.29
712 713 5.273170 GCACACATATTTGCGAACATGTAT 58.727 37.500 10.26 0.00 30.66 2.29
713 714 5.171874 GCACACATATTTGCGAACATGTATG 59.828 40.000 11.32 11.32 30.76 2.39
714 715 5.171874 CACACATATTTGCGAACATGTATGC 59.828 40.000 10.26 13.70 31.57 3.14
715 716 5.163673 ACACATATTTGCGAACATGTATGCA 60.164 36.000 18.02 18.02 31.57 3.96
716 717 5.742926 CACATATTTGCGAACATGTATGCAA 59.257 36.000 25.33 25.33 44.81 4.08
717 718 6.418523 CACATATTTGCGAACATGTATGCAAT 59.581 34.615 27.94 21.47 45.66 3.56
718 719 7.590689 CACATATTTGCGAACATGTATGCAATA 59.409 33.333 27.94 22.41 45.66 1.90
719 720 8.134261 ACATATTTGCGAACATGTATGCAATAA 58.866 29.630 27.94 21.40 45.66 1.40
720 721 8.966194 CATATTTGCGAACATGTATGCAATAAA 58.034 29.630 27.94 18.58 45.66 1.40
721 722 9.695526 ATATTTGCGAACATGTATGCAATAAAT 57.304 25.926 27.94 22.32 45.66 1.40
722 723 7.824704 TTTGCGAACATGTATGCAATAAATT 57.175 28.000 27.94 0.00 45.66 1.82
723 724 7.824704 TTGCGAACATGTATGCAATAAATTT 57.175 28.000 25.33 0.00 41.95 1.82
724 725 7.824704 TGCGAACATGTATGCAATAAATTTT 57.175 28.000 19.24 0.00 33.80 1.82
725 726 7.893824 TGCGAACATGTATGCAATAAATTTTC 58.106 30.769 19.24 0.00 32.38 2.29
726 727 7.758980 TGCGAACATGTATGCAATAAATTTTCT 59.241 29.630 19.24 0.00 33.16 2.52
727 728 8.594687 GCGAACATGTATGCAATAAATTTTCTT 58.405 29.630 15.23 0.00 33.16 2.52
769 770 8.654230 TTAAAAACATGCTTAAAATGAGTGCA 57.346 26.923 0.00 0.00 38.05 4.57
770 771 6.774354 AAAACATGCTTAAAATGAGTGCAG 57.226 33.333 0.00 0.00 37.07 4.41
771 772 5.710513 AACATGCTTAAAATGAGTGCAGA 57.289 34.783 0.00 0.00 37.07 4.26
772 773 5.909621 ACATGCTTAAAATGAGTGCAGAT 57.090 34.783 0.00 0.00 37.07 2.90
773 774 7.395190 AACATGCTTAAAATGAGTGCAGATA 57.605 32.000 0.00 0.00 37.07 1.98
774 775 6.789262 ACATGCTTAAAATGAGTGCAGATAC 58.211 36.000 0.00 0.00 37.07 2.24
775 776 5.818136 TGCTTAAAATGAGTGCAGATACC 57.182 39.130 0.00 0.00 0.00 2.73
776 777 4.640201 TGCTTAAAATGAGTGCAGATACCC 59.360 41.667 0.00 0.00 0.00 3.69
777 778 4.036852 GCTTAAAATGAGTGCAGATACCCC 59.963 45.833 0.00 0.00 0.00 4.95
778 779 5.440610 CTTAAAATGAGTGCAGATACCCCT 58.559 41.667 0.00 0.00 0.00 4.79
779 780 3.287867 AAATGAGTGCAGATACCCCTG 57.712 47.619 0.00 0.00 37.23 4.45
787 788 2.240493 CAGATACCCCTGCGTTTAGG 57.760 55.000 0.00 0.00 37.59 2.69
788 789 1.760613 CAGATACCCCTGCGTTTAGGA 59.239 52.381 4.39 0.00 40.42 2.94
789 790 1.761198 AGATACCCCTGCGTTTAGGAC 59.239 52.381 4.39 0.00 40.42 3.85
797 798 3.557824 CGTTTAGGACGTGCCCAC 58.442 61.111 2.38 0.00 46.49 4.61
798 799 1.005394 CGTTTAGGACGTGCCCACT 60.005 57.895 2.38 0.00 46.49 4.00
799 800 1.012486 CGTTTAGGACGTGCCCACTC 61.012 60.000 2.38 0.00 46.49 3.51
800 801 1.012486 GTTTAGGACGTGCCCACTCG 61.012 60.000 2.38 0.00 37.37 4.18
802 803 0.608856 TTAGGACGTGCCCACTCGTA 60.609 55.000 2.38 0.00 45.27 3.43
803 804 1.028330 TAGGACGTGCCCACTCGTAG 61.028 60.000 2.38 0.00 45.27 3.51
804 805 2.633509 GGACGTGCCCACTCGTAGT 61.634 63.158 0.00 0.00 45.27 2.73
805 806 1.288127 GACGTGCCCACTCGTAGTT 59.712 57.895 0.00 0.00 45.27 2.24
806 807 1.006571 ACGTGCCCACTCGTAGTTG 60.007 57.895 0.00 0.00 43.62 3.16
807 808 1.736645 CGTGCCCACTCGTAGTTGG 60.737 63.158 0.00 0.00 34.36 3.77
808 809 1.375523 GTGCCCACTCGTAGTTGGG 60.376 63.158 2.00 2.00 38.65 4.12
809 810 1.534476 TGCCCACTCGTAGTTGGGA 60.534 57.895 10.98 6.45 38.20 4.37
810 811 1.122632 TGCCCACTCGTAGTTGGGAA 61.123 55.000 10.98 0.00 38.20 3.97
811 812 0.035739 GCCCACTCGTAGTTGGGAAA 59.964 55.000 10.98 0.00 38.20 3.13
812 813 1.339727 GCCCACTCGTAGTTGGGAAAT 60.340 52.381 10.98 0.00 38.20 2.17
813 814 2.356135 CCCACTCGTAGTTGGGAAATG 58.644 52.381 0.00 0.00 38.20 2.32
814 815 2.290071 CCCACTCGTAGTTGGGAAATGT 60.290 50.000 0.00 0.00 38.20 2.71
815 816 3.055675 CCCACTCGTAGTTGGGAAATGTA 60.056 47.826 0.00 0.00 38.20 2.29
816 817 4.383770 CCCACTCGTAGTTGGGAAATGTAT 60.384 45.833 0.00 0.00 38.20 2.29
817 818 4.570772 CCACTCGTAGTTGGGAAATGTATG 59.429 45.833 0.00 0.00 0.00 2.39
818 819 4.570772 CACTCGTAGTTGGGAAATGTATGG 59.429 45.833 0.00 0.00 0.00 2.74
819 820 4.468510 ACTCGTAGTTGGGAAATGTATGGA 59.531 41.667 0.00 0.00 0.00 3.41
820 821 5.130477 ACTCGTAGTTGGGAAATGTATGGAT 59.870 40.000 0.00 0.00 0.00 3.41
821 822 5.364778 TCGTAGTTGGGAAATGTATGGATG 58.635 41.667 0.00 0.00 0.00 3.51
822 823 5.129650 TCGTAGTTGGGAAATGTATGGATGA 59.870 40.000 0.00 0.00 0.00 2.92
823 824 5.820423 CGTAGTTGGGAAATGTATGGATGAA 59.180 40.000 0.00 0.00 0.00 2.57
824 825 6.486657 CGTAGTTGGGAAATGTATGGATGAAT 59.513 38.462 0.00 0.00 0.00 2.57
825 826 6.966534 AGTTGGGAAATGTATGGATGAATC 57.033 37.500 0.00 0.00 0.00 2.52
841 842 7.295952 GGATGAATCCGTGTACATATGAATC 57.704 40.000 10.38 0.00 37.19 2.52
842 843 6.313905 GGATGAATCCGTGTACATATGAATCC 59.686 42.308 10.38 6.56 37.19 3.01
843 844 6.168270 TGAATCCGTGTACATATGAATCCA 57.832 37.500 10.38 0.00 0.00 3.41
844 845 6.768483 TGAATCCGTGTACATATGAATCCAT 58.232 36.000 10.38 0.00 36.81 3.41
845 846 7.223584 TGAATCCGTGTACATATGAATCCATT 58.776 34.615 10.38 0.00 34.31 3.16
846 847 7.719193 TGAATCCGTGTACATATGAATCCATTT 59.281 33.333 10.38 0.00 34.31 2.32
847 848 8.463930 AATCCGTGTACATATGAATCCATTTT 57.536 30.769 10.38 0.00 34.31 1.82
848 849 7.258022 TCCGTGTACATATGAATCCATTTTG 57.742 36.000 10.38 0.00 34.31 2.44
849 850 7.051000 TCCGTGTACATATGAATCCATTTTGA 58.949 34.615 10.38 0.00 34.31 2.69
850 851 7.554476 TCCGTGTACATATGAATCCATTTTGAA 59.446 33.333 10.38 0.00 34.31 2.69
851 852 8.187480 CCGTGTACATATGAATCCATTTTGAAA 58.813 33.333 10.38 0.00 34.31 2.69
852 853 9.566530 CGTGTACATATGAATCCATTTTGAAAA 57.433 29.630 10.38 0.00 34.31 2.29
889 890 9.696917 AAATAATGAACAAACTCTTCATTCCAC 57.303 29.630 9.14 0.00 42.23 4.02
892 893 4.580167 TGAACAAACTCTTCATTCCACCAG 59.420 41.667 0.00 0.00 0.00 4.00
937 938 0.664466 GCTGCCGGAGAACAAAAAGC 60.664 55.000 5.05 0.00 0.00 3.51
1056 1057 1.222113 CCTTTCCCTTCTCTCGGCC 59.778 63.158 0.00 0.00 0.00 6.13
1416 1498 9.467258 TTCAAGATGATAGCTTTTGTTTTTGAG 57.533 29.630 0.00 0.00 0.00 3.02
1653 1744 3.462483 TTGAGCTGTCACCTTAAACGA 57.538 42.857 0.00 0.00 30.10 3.85
1663 1754 1.888512 ACCTTAAACGACTACCAGCGA 59.111 47.619 0.00 0.00 0.00 4.93
1834 1926 7.624360 TTGTATAAGCAAACTCTTACATGGG 57.376 36.000 0.00 0.00 32.02 4.00
1861 1953 6.840780 AATTGGAGAGAACCATTTCGAATT 57.159 33.333 0.00 0.00 39.82 2.17
1862 1954 7.938140 AATTGGAGAGAACCATTTCGAATTA 57.062 32.000 0.00 0.00 39.82 1.40
1967 2059 3.992643 TGAACAATTTGACAATGCCCTG 58.007 40.909 2.79 0.00 0.00 4.45
2063 2155 5.152623 GGCACCTATGATACTATGCTTGA 57.847 43.478 0.00 0.00 33.57 3.02
2083 2175 3.758023 TGAAGTTTCCAGTATGCACATGG 59.242 43.478 7.24 7.24 35.30 3.66
2089 2181 2.093181 TCCAGTATGCACATGGTGTACC 60.093 50.000 12.12 0.00 35.75 3.34
2274 2371 8.049117 AGATTCTCTGATGGCATTGTTAAGTTA 58.951 33.333 0.00 0.00 0.00 2.24
2581 2690 6.041511 CAGTTCGATGTCAGAGATTTGATCT 58.958 40.000 0.00 0.00 43.70 2.75
2883 2992 3.290948 TGGTGTTGCAAAGAGTTAGGT 57.709 42.857 0.00 0.00 0.00 3.08
3045 3154 2.000447 GTCGAGGCATCAAACCTACAC 59.000 52.381 0.00 0.00 37.77 2.90
3188 3297 3.002656 CCATGGCAAGCGTTACTATTCAG 59.997 47.826 0.00 0.00 0.00 3.02
3207 3316 5.708736 TCAGGGCAGACTTATTTATTCCA 57.291 39.130 0.00 0.00 0.00 3.53
3676 3789 7.398024 ACTACTGCTATTTCATTTCAGTCCTT 58.602 34.615 0.00 0.00 38.71 3.36
3711 3824 7.826252 AGTTGTGCATCTTGTAGAAGTTCATAT 59.174 33.333 5.50 0.00 0.00 1.78
4425 4538 1.450312 GATGGTGAAGGTCGGGCAG 60.450 63.158 0.00 0.00 0.00 4.85
4428 4541 2.432628 GTGAAGGTCGGGCAGTCG 60.433 66.667 0.00 0.00 0.00 4.18
4458 4571 1.140312 ACAACCCCTCTCACATGTGT 58.860 50.000 24.63 1.14 0.00 3.72
4498 4611 1.412343 GGACAAAAAGAGGGCAAGCAA 59.588 47.619 0.00 0.00 0.00 3.91
4822 4937 5.594725 CCTTTCTCCTGTACTGCATAGTCTA 59.405 44.000 0.00 0.00 38.36 2.59
4985 5451 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
4986 5452 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
4987 5453 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4988 5454 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4989 5455 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4990 5456 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4991 5457 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4992 5458 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4993 5459 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4994 5460 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4995 5461 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4996 5462 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4997 5463 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4998 5464 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5656 6122 6.855836 TGCATGATTTCCTGTTCAATCTTAC 58.144 36.000 0.00 0.00 31.64 2.34
6004 6479 4.527564 GCTGTAGTTGTAGCAACACAAAG 58.472 43.478 13.48 6.99 39.98 2.77
6032 6507 5.997129 CACTTCCTAAAATTTTGGTGCCATT 59.003 36.000 13.76 0.00 0.00 3.16
6073 6548 4.901197 TTACTTGACATCTACTTGCCCA 57.099 40.909 0.00 0.00 0.00 5.36
6569 7046 8.825667 CCTTATTTCTCTATAAGAAGTGAGGC 57.174 38.462 7.76 0.00 44.81 4.70
6660 7155 6.620253 TTTGTTGTTGTAAAAGACGAAAGC 57.380 33.333 0.00 0.00 0.00 3.51
6785 7280 6.772233 TGAAGGAATGACACTGAAGAAATTCA 59.228 34.615 0.00 0.00 0.00 2.57
6978 7474 2.415893 GGAACCATGTTCAGCAAATCCG 60.416 50.000 9.01 0.00 0.00 4.18
7024 7520 8.557864 CAAACATTGCATCTCTCTTCCTAATAG 58.442 37.037 0.00 0.00 0.00 1.73
7029 7525 5.663106 TGCATCTCTCTTCCTAATAGGTGTT 59.337 40.000 6.17 0.00 36.53 3.32
7061 7557 4.097135 CCGACTCTCTGAGCTTTGAGATAA 59.903 45.833 16.48 0.31 38.46 1.75
7074 7570 3.746045 TGAGATAATTGGCGGTAGGAC 57.254 47.619 0.00 0.00 0.00 3.85
7075 7571 2.035449 TGAGATAATTGGCGGTAGGACG 59.965 50.000 0.00 0.00 0.00 4.79
7076 7572 2.035576 GAGATAATTGGCGGTAGGACGT 59.964 50.000 0.00 0.00 35.98 4.34
7077 7573 2.035576 AGATAATTGGCGGTAGGACGTC 59.964 50.000 7.13 7.13 39.28 4.34
7145 7642 2.095263 CACTAGCAAAATCCAACCACCG 60.095 50.000 0.00 0.00 0.00 4.94
7206 7703 1.195448 CTTCTCGCGTGACTTTGCAAT 59.805 47.619 10.88 0.00 0.00 3.56
7209 7706 0.660488 TCGCGTGACTTTGCAATTGT 59.340 45.000 5.77 2.19 0.00 2.71
7214 7711 3.291585 CGTGACTTTGCAATTGTGTCTC 58.708 45.455 7.40 7.09 0.00 3.36
7244 7741 3.118592 CCCTCGTCCTTCTCTTATTTGCT 60.119 47.826 0.00 0.00 0.00 3.91
7267 7764 5.730550 TGAAATCACTAGTTAAGGATGCGT 58.269 37.500 0.00 0.00 0.00 5.24
7319 7817 3.732048 TTTTCCTAACATGGGAGGGAC 57.268 47.619 13.58 0.00 34.06 4.46
7375 7884 8.940768 TTTCCAAAACGAAAGATCTTTTGAAT 57.059 26.923 32.97 21.36 36.66 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.832445 GAGATAGTATTTATCAACCACCAGAAA 57.168 33.333 0.00 0.00 0.00 2.52
33 34 9.213777 AGAGATAGTATTTATCAACCACCAGAA 57.786 33.333 0.00 0.00 0.00 3.02
34 35 8.642432 CAGAGATAGTATTTATCAACCACCAGA 58.358 37.037 0.00 0.00 0.00 3.86
35 36 8.424918 ACAGAGATAGTATTTATCAACCACCAG 58.575 37.037 0.00 0.00 0.00 4.00
36 37 8.319057 ACAGAGATAGTATTTATCAACCACCA 57.681 34.615 0.00 0.00 0.00 4.17
51 52 8.832521 CGTCTTCTAGTTTCATACAGAGATAGT 58.167 37.037 0.00 0.00 0.00 2.12
52 53 8.832521 ACGTCTTCTAGTTTCATACAGAGATAG 58.167 37.037 0.00 0.00 0.00 2.08
53 54 8.734218 ACGTCTTCTAGTTTCATACAGAGATA 57.266 34.615 0.00 0.00 0.00 1.98
54 55 7.633193 ACGTCTTCTAGTTTCATACAGAGAT 57.367 36.000 0.00 0.00 0.00 2.75
55 56 7.450124 AACGTCTTCTAGTTTCATACAGAGA 57.550 36.000 0.00 0.00 0.00 3.10
56 57 8.522178 AAAACGTCTTCTAGTTTCATACAGAG 57.478 34.615 0.00 0.00 39.36 3.35
57 58 9.970395 TTAAAACGTCTTCTAGTTTCATACAGA 57.030 29.630 0.00 0.00 39.36 3.41
59 60 9.199982 CCTTAAAACGTCTTCTAGTTTCATACA 57.800 33.333 0.00 0.00 39.36 2.29
60 61 8.167345 GCCTTAAAACGTCTTCTAGTTTCATAC 58.833 37.037 0.00 0.00 39.36 2.39
61 62 8.092687 AGCCTTAAAACGTCTTCTAGTTTCATA 58.907 33.333 0.00 0.00 39.36 2.15
62 63 6.935208 AGCCTTAAAACGTCTTCTAGTTTCAT 59.065 34.615 0.00 0.00 39.36 2.57
63 64 6.285990 AGCCTTAAAACGTCTTCTAGTTTCA 58.714 36.000 0.00 0.00 39.36 2.69
64 65 6.782298 AGCCTTAAAACGTCTTCTAGTTTC 57.218 37.500 0.00 0.00 39.36 2.78
65 66 8.667076 TTTAGCCTTAAAACGTCTTCTAGTTT 57.333 30.769 0.00 0.00 41.72 2.66
66 67 8.843885 ATTTAGCCTTAAAACGTCTTCTAGTT 57.156 30.769 0.00 0.00 32.80 2.24
67 68 8.843885 AATTTAGCCTTAAAACGTCTTCTAGT 57.156 30.769 0.00 0.00 32.80 2.57
69 70 9.933723 ACTAATTTAGCCTTAAAACGTCTTCTA 57.066 29.630 3.28 0.00 32.80 2.10
70 71 8.843885 ACTAATTTAGCCTTAAAACGTCTTCT 57.156 30.769 3.28 0.00 32.80 2.85
71 72 9.888878 AAACTAATTTAGCCTTAAAACGTCTTC 57.111 29.630 3.28 0.00 32.80 2.87
98 99 8.854117 GTGGCATTTATCAAGATCCTATTTTCT 58.146 33.333 0.00 0.00 0.00 2.52
99 100 8.632679 TGTGGCATTTATCAAGATCCTATTTTC 58.367 33.333 0.00 0.00 0.00 2.29
100 101 8.416329 GTGTGGCATTTATCAAGATCCTATTTT 58.584 33.333 0.00 0.00 0.00 1.82
101 102 7.255242 CGTGTGGCATTTATCAAGATCCTATTT 60.255 37.037 0.00 0.00 0.00 1.40
102 103 6.205464 CGTGTGGCATTTATCAAGATCCTATT 59.795 38.462 0.00 0.00 0.00 1.73
103 104 5.702670 CGTGTGGCATTTATCAAGATCCTAT 59.297 40.000 0.00 0.00 0.00 2.57
104 105 5.056480 CGTGTGGCATTTATCAAGATCCTA 58.944 41.667 0.00 0.00 0.00 2.94
105 106 3.879295 CGTGTGGCATTTATCAAGATCCT 59.121 43.478 0.00 0.00 0.00 3.24
106 107 3.627577 ACGTGTGGCATTTATCAAGATCC 59.372 43.478 0.00 0.00 0.00 3.36
107 108 4.094887 ACACGTGTGGCATTTATCAAGATC 59.905 41.667 22.71 0.00 34.19 2.75
108 109 4.009675 ACACGTGTGGCATTTATCAAGAT 58.990 39.130 22.71 0.00 34.19 2.40
109 110 3.188254 CACACGTGTGGCATTTATCAAGA 59.812 43.478 35.65 0.00 42.10 3.02
110 111 3.188254 TCACACGTGTGGCATTTATCAAG 59.812 43.478 39.88 16.59 45.65 3.02
111 112 3.142174 TCACACGTGTGGCATTTATCAA 58.858 40.909 39.88 19.72 45.65 2.57
112 113 2.772287 TCACACGTGTGGCATTTATCA 58.228 42.857 39.88 20.41 45.65 2.15
127 128 1.204062 CCATGCGTTCGTGTCACAC 59.796 57.895 0.00 0.00 0.00 3.82
128 129 2.603247 GCCATGCGTTCGTGTCACA 61.603 57.895 3.42 0.00 0.00 3.58
129 130 2.111932 TTGCCATGCGTTCGTGTCAC 62.112 55.000 0.00 0.00 0.00 3.67
130 131 1.889573 TTGCCATGCGTTCGTGTCA 60.890 52.632 0.00 0.00 0.00 3.58
131 132 1.440353 GTTGCCATGCGTTCGTGTC 60.440 57.895 0.00 0.00 0.00 3.67
132 133 1.841663 GAGTTGCCATGCGTTCGTGT 61.842 55.000 0.00 0.00 0.00 4.49
133 134 1.154413 GAGTTGCCATGCGTTCGTG 60.154 57.895 0.00 0.00 0.00 4.35
134 135 2.325082 GGAGTTGCCATGCGTTCGT 61.325 57.895 0.00 0.00 36.34 3.85
135 136 2.480555 GGAGTTGCCATGCGTTCG 59.519 61.111 0.00 0.00 36.34 3.95
136 137 1.573829 TTCGGAGTTGCCATGCGTTC 61.574 55.000 0.00 0.00 35.94 3.95
137 138 0.960364 ATTCGGAGTTGCCATGCGTT 60.960 50.000 0.00 0.00 35.94 4.84
138 139 1.377202 ATTCGGAGTTGCCATGCGT 60.377 52.632 0.00 0.00 35.94 5.24
139 140 1.063006 CATTCGGAGTTGCCATGCG 59.937 57.895 0.00 0.00 35.94 4.73
140 141 0.527565 AACATTCGGAGTTGCCATGC 59.472 50.000 0.00 0.00 35.94 4.06
141 142 3.302365 AAAACATTCGGAGTTGCCATG 57.698 42.857 0.00 0.00 35.94 3.66
142 143 5.410067 CATAAAAACATTCGGAGTTGCCAT 58.590 37.500 0.00 0.00 35.94 4.40
143 144 4.321601 CCATAAAAACATTCGGAGTTGCCA 60.322 41.667 0.00 0.00 35.94 4.92
144 145 4.173256 CCATAAAAACATTCGGAGTTGCC 58.827 43.478 0.00 0.00 0.00 4.52
145 146 3.612423 GCCATAAAAACATTCGGAGTTGC 59.388 43.478 0.00 0.00 0.00 4.17
146 147 4.804108 TGCCATAAAAACATTCGGAGTTG 58.196 39.130 0.00 0.00 0.00 3.16
147 148 5.010617 AGTTGCCATAAAAACATTCGGAGTT 59.989 36.000 0.00 0.00 0.00 3.01
148 149 4.522789 AGTTGCCATAAAAACATTCGGAGT 59.477 37.500 0.00 0.00 0.00 3.85
149 150 5.059404 AGTTGCCATAAAAACATTCGGAG 57.941 39.130 0.00 0.00 0.00 4.63
150 151 5.461032 AAGTTGCCATAAAAACATTCGGA 57.539 34.783 0.00 0.00 0.00 4.55
151 152 6.866248 ACTAAAGTTGCCATAAAAACATTCGG 59.134 34.615 0.00 0.00 0.00 4.30
152 153 7.867445 ACTAAAGTTGCCATAAAAACATTCG 57.133 32.000 0.00 0.00 0.00 3.34
158 159 9.418045 GCTTCATAACTAAAGTTGCCATAAAAA 57.582 29.630 5.62 0.00 38.90 1.94
159 160 8.580720 TGCTTCATAACTAAAGTTGCCATAAAA 58.419 29.630 5.62 0.00 38.90 1.52
160 161 8.116651 TGCTTCATAACTAAAGTTGCCATAAA 57.883 30.769 5.62 0.00 38.90 1.40
161 162 7.695480 TGCTTCATAACTAAAGTTGCCATAA 57.305 32.000 5.62 0.00 38.90 1.90
162 163 7.339212 ACATGCTTCATAACTAAAGTTGCCATA 59.661 33.333 5.62 0.00 38.90 2.74
163 164 6.153340 ACATGCTTCATAACTAAAGTTGCCAT 59.847 34.615 5.62 0.00 38.90 4.40
164 165 5.476599 ACATGCTTCATAACTAAAGTTGCCA 59.523 36.000 5.62 0.00 38.90 4.92
165 166 5.954335 ACATGCTTCATAACTAAAGTTGCC 58.046 37.500 5.62 0.00 38.90 4.52
166 167 6.611381 TGACATGCTTCATAACTAAAGTTGC 58.389 36.000 5.62 1.01 38.90 4.17
167 168 9.630098 AATTGACATGCTTCATAACTAAAGTTG 57.370 29.630 5.62 0.00 38.90 3.16
172 173 9.844790 CAGAAAATTGACATGCTTCATAACTAA 57.155 29.630 0.00 0.00 0.00 2.24
173 174 9.013229 ACAGAAAATTGACATGCTTCATAACTA 57.987 29.630 0.00 0.00 0.00 2.24
174 175 7.889469 ACAGAAAATTGACATGCTTCATAACT 58.111 30.769 0.00 0.00 0.00 2.24
175 176 8.524870 AACAGAAAATTGACATGCTTCATAAC 57.475 30.769 0.00 0.00 0.00 1.89
176 177 7.538334 CGAACAGAAAATTGACATGCTTCATAA 59.462 33.333 0.00 0.00 0.00 1.90
177 178 7.022979 CGAACAGAAAATTGACATGCTTCATA 58.977 34.615 0.00 0.00 0.00 2.15
178 179 5.860182 CGAACAGAAAATTGACATGCTTCAT 59.140 36.000 0.00 0.00 0.00 2.57
179 180 5.214417 CGAACAGAAAATTGACATGCTTCA 58.786 37.500 0.00 0.00 0.00 3.02
180 181 4.618489 CCGAACAGAAAATTGACATGCTTC 59.382 41.667 0.00 0.00 0.00 3.86
181 182 4.278170 TCCGAACAGAAAATTGACATGCTT 59.722 37.500 0.00 0.00 0.00 3.91
182 183 3.820467 TCCGAACAGAAAATTGACATGCT 59.180 39.130 0.00 0.00 0.00 3.79
183 184 4.159377 TCCGAACAGAAAATTGACATGC 57.841 40.909 0.00 0.00 0.00 4.06
184 185 5.097529 CCATCCGAACAGAAAATTGACATG 58.902 41.667 0.00 0.00 0.00 3.21
185 186 4.380867 GCCATCCGAACAGAAAATTGACAT 60.381 41.667 0.00 0.00 0.00 3.06
186 187 3.057596 GCCATCCGAACAGAAAATTGACA 60.058 43.478 0.00 0.00 0.00 3.58
187 188 3.057596 TGCCATCCGAACAGAAAATTGAC 60.058 43.478 0.00 0.00 0.00 3.18
188 189 3.153130 TGCCATCCGAACAGAAAATTGA 58.847 40.909 0.00 0.00 0.00 2.57
189 190 3.574284 TGCCATCCGAACAGAAAATTG 57.426 42.857 0.00 0.00 0.00 2.32
190 191 3.573967 ACTTGCCATCCGAACAGAAAATT 59.426 39.130 0.00 0.00 0.00 1.82
191 192 3.157087 ACTTGCCATCCGAACAGAAAAT 58.843 40.909 0.00 0.00 0.00 1.82
192 193 2.582052 ACTTGCCATCCGAACAGAAAA 58.418 42.857 0.00 0.00 0.00 2.29
193 194 2.270352 ACTTGCCATCCGAACAGAAA 57.730 45.000 0.00 0.00 0.00 2.52
194 195 2.270352 AACTTGCCATCCGAACAGAA 57.730 45.000 0.00 0.00 0.00 3.02
195 196 2.151202 GAAACTTGCCATCCGAACAGA 58.849 47.619 0.00 0.00 0.00 3.41
196 197 2.095567 CAGAAACTTGCCATCCGAACAG 60.096 50.000 0.00 0.00 0.00 3.16
197 198 1.879380 CAGAAACTTGCCATCCGAACA 59.121 47.619 0.00 0.00 0.00 3.18
198 199 1.880027 ACAGAAACTTGCCATCCGAAC 59.120 47.619 0.00 0.00 0.00 3.95
199 200 2.270352 ACAGAAACTTGCCATCCGAA 57.730 45.000 0.00 0.00 0.00 4.30
200 201 2.270352 AACAGAAACTTGCCATCCGA 57.730 45.000 0.00 0.00 0.00 4.55
201 202 3.369546 AAAACAGAAACTTGCCATCCG 57.630 42.857 0.00 0.00 0.00 4.18
234 235 8.889717 ACTAAAGATGTCAGTCGAAAAGAAAAA 58.110 29.630 0.00 0.00 0.00 1.94
235 236 8.433421 ACTAAAGATGTCAGTCGAAAAGAAAA 57.567 30.769 0.00 0.00 0.00 2.29
236 237 8.073355 GACTAAAGATGTCAGTCGAAAAGAAA 57.927 34.615 0.00 0.00 34.80 2.52
237 238 7.639162 GACTAAAGATGTCAGTCGAAAAGAA 57.361 36.000 0.00 0.00 34.80 2.52
245 246 7.940824 GTTTCTTACGACTAAAGATGTCAGTC 58.059 38.462 0.00 0.00 36.23 3.51
246 247 7.870588 GTTTCTTACGACTAAAGATGTCAGT 57.129 36.000 0.00 0.00 33.17 3.41
262 263 0.725117 CCCGCCATGACGTTTCTTAC 59.275 55.000 0.00 0.00 0.00 2.34
263 264 0.609151 TCCCGCCATGACGTTTCTTA 59.391 50.000 0.00 0.00 0.00 2.10
264 265 0.035439 ATCCCGCCATGACGTTTCTT 60.035 50.000 0.00 0.00 0.00 2.52
265 266 0.035439 AATCCCGCCATGACGTTTCT 60.035 50.000 0.00 0.00 0.00 2.52
266 267 1.329599 GTAATCCCGCCATGACGTTTC 59.670 52.381 0.00 0.00 0.00 2.78
267 268 1.065709 AGTAATCCCGCCATGACGTTT 60.066 47.619 0.00 0.00 0.00 3.60
268 269 0.539986 AGTAATCCCGCCATGACGTT 59.460 50.000 0.00 0.00 0.00 3.99
269 270 0.539986 AAGTAATCCCGCCATGACGT 59.460 50.000 0.00 0.00 0.00 4.34
270 271 1.217882 GAAGTAATCCCGCCATGACG 58.782 55.000 0.00 0.00 0.00 4.35
271 272 1.217882 CGAAGTAATCCCGCCATGAC 58.782 55.000 0.00 0.00 0.00 3.06
272 273 0.828022 ACGAAGTAATCCCGCCATGA 59.172 50.000 0.00 0.00 41.94 3.07
273 274 1.597663 GAACGAAGTAATCCCGCCATG 59.402 52.381 0.00 0.00 45.00 3.66
274 275 1.474498 GGAACGAAGTAATCCCGCCAT 60.474 52.381 0.00 0.00 45.00 4.40
275 276 0.108041 GGAACGAAGTAATCCCGCCA 60.108 55.000 0.00 0.00 45.00 5.69
276 277 0.108041 TGGAACGAAGTAATCCCGCC 60.108 55.000 0.00 0.00 45.00 6.13
277 278 1.004595 GTGGAACGAAGTAATCCCGC 58.995 55.000 0.00 0.00 45.00 6.13
278 279 1.997606 GTGTGGAACGAAGTAATCCCG 59.002 52.381 0.00 0.00 45.00 5.14
279 280 3.048337 TGTGTGGAACGAAGTAATCCC 57.952 47.619 0.00 0.00 45.00 3.85
280 281 4.000988 ACATGTGTGGAACGAAGTAATCC 58.999 43.478 0.00 0.00 45.00 3.01
281 282 4.688879 TCACATGTGTGGAACGAAGTAATC 59.311 41.667 24.63 0.00 43.67 1.75
282 283 4.451096 GTCACATGTGTGGAACGAAGTAAT 59.549 41.667 24.63 0.00 43.67 1.89
283 284 3.805422 GTCACATGTGTGGAACGAAGTAA 59.195 43.478 24.63 0.00 43.67 2.24
284 285 3.181474 TGTCACATGTGTGGAACGAAGTA 60.181 43.478 24.63 0.00 43.67 2.24
285 286 2.210116 GTCACATGTGTGGAACGAAGT 58.790 47.619 24.63 0.00 45.51 3.01
286 287 2.209273 TGTCACATGTGTGGAACGAAG 58.791 47.619 24.63 0.00 45.65 3.79
287 288 2.317530 TGTCACATGTGTGGAACGAA 57.682 45.000 24.63 0.35 45.65 3.85
288 289 2.542020 ATGTCACATGTGTGGAACGA 57.458 45.000 24.63 1.14 45.65 3.85
289 290 3.624326 AAATGTCACATGTGTGGAACG 57.376 42.857 24.63 0.00 45.65 3.95
290 291 6.252967 TGATAAATGTCACATGTGTGGAAC 57.747 37.500 24.63 15.86 45.65 3.62
291 292 7.465353 AATGATAAATGTCACATGTGTGGAA 57.535 32.000 24.63 9.87 45.65 3.53
292 293 7.465353 AAATGATAAATGTCACATGTGTGGA 57.535 32.000 24.63 10.69 45.65 4.02
293 294 9.636879 TTTAAATGATAAATGTCACATGTGTGG 57.363 29.630 24.63 0.02 45.65 4.17
316 317 9.179909 TGCTTCCTCCGTATCAAAATATTTTTA 57.820 29.630 10.77 4.00 0.00 1.52
317 318 8.062065 TGCTTCCTCCGTATCAAAATATTTTT 57.938 30.769 10.77 0.79 0.00 1.94
318 319 7.556275 TCTGCTTCCTCCGTATCAAAATATTTT 59.444 33.333 7.64 7.64 0.00 1.82
319 320 7.054124 TCTGCTTCCTCCGTATCAAAATATTT 58.946 34.615 0.00 0.00 0.00 1.40
320 321 6.591935 TCTGCTTCCTCCGTATCAAAATATT 58.408 36.000 0.00 0.00 0.00 1.28
321 322 6.174720 TCTGCTTCCTCCGTATCAAAATAT 57.825 37.500 0.00 0.00 0.00 1.28
322 323 5.607939 TCTGCTTCCTCCGTATCAAAATA 57.392 39.130 0.00 0.00 0.00 1.40
323 324 4.487714 TCTGCTTCCTCCGTATCAAAAT 57.512 40.909 0.00 0.00 0.00 1.82
324 325 3.973206 TCTGCTTCCTCCGTATCAAAA 57.027 42.857 0.00 0.00 0.00 2.44
325 326 4.893524 TCTATCTGCTTCCTCCGTATCAAA 59.106 41.667 0.00 0.00 0.00 2.69
326 327 4.470602 TCTATCTGCTTCCTCCGTATCAA 58.529 43.478 0.00 0.00 0.00 2.57
327 328 4.100279 TCTATCTGCTTCCTCCGTATCA 57.900 45.455 0.00 0.00 0.00 2.15
328 329 4.762765 TCTTCTATCTGCTTCCTCCGTATC 59.237 45.833 0.00 0.00 0.00 2.24
329 330 4.730966 TCTTCTATCTGCTTCCTCCGTAT 58.269 43.478 0.00 0.00 0.00 3.06
330 331 4.166246 TCTTCTATCTGCTTCCTCCGTA 57.834 45.455 0.00 0.00 0.00 4.02
331 332 3.019799 TCTTCTATCTGCTTCCTCCGT 57.980 47.619 0.00 0.00 0.00 4.69
332 333 5.713792 TTATCTTCTATCTGCTTCCTCCG 57.286 43.478 0.00 0.00 0.00 4.63
357 358 8.734386 CCATGCTCTTAGACTTGACTTTATTTT 58.266 33.333 0.00 0.00 0.00 1.82
358 359 8.103305 TCCATGCTCTTAGACTTGACTTTATTT 58.897 33.333 0.00 0.00 0.00 1.40
359 360 7.624549 TCCATGCTCTTAGACTTGACTTTATT 58.375 34.615 0.00 0.00 0.00 1.40
360 361 7.187824 TCCATGCTCTTAGACTTGACTTTAT 57.812 36.000 0.00 0.00 0.00 1.40
361 362 6.605471 TCCATGCTCTTAGACTTGACTTTA 57.395 37.500 0.00 0.00 0.00 1.85
362 363 5.489792 TCCATGCTCTTAGACTTGACTTT 57.510 39.130 0.00 0.00 0.00 2.66
363 364 5.486526 CTTCCATGCTCTTAGACTTGACTT 58.513 41.667 0.00 0.00 0.00 3.01
364 365 4.081198 CCTTCCATGCTCTTAGACTTGACT 60.081 45.833 0.00 0.00 0.00 3.41
365 366 4.081420 TCCTTCCATGCTCTTAGACTTGAC 60.081 45.833 0.00 0.00 0.00 3.18
366 367 4.096681 TCCTTCCATGCTCTTAGACTTGA 58.903 43.478 0.00 0.00 0.00 3.02
367 368 4.478206 TCCTTCCATGCTCTTAGACTTG 57.522 45.455 0.00 0.00 0.00 3.16
368 369 4.534103 AGTTCCTTCCATGCTCTTAGACTT 59.466 41.667 0.00 0.00 0.00 3.01
369 370 4.100373 AGTTCCTTCCATGCTCTTAGACT 58.900 43.478 0.00 0.00 0.00 3.24
370 371 4.479786 AGTTCCTTCCATGCTCTTAGAC 57.520 45.455 0.00 0.00 0.00 2.59
371 372 5.505181 AAAGTTCCTTCCATGCTCTTAGA 57.495 39.130 0.00 0.00 0.00 2.10
372 373 6.581171 AAAAAGTTCCTTCCATGCTCTTAG 57.419 37.500 0.00 0.00 0.00 2.18
373 374 8.650143 ATTAAAAAGTTCCTTCCATGCTCTTA 57.350 30.769 0.00 0.00 0.00 2.10
374 375 6.976934 TTAAAAAGTTCCTTCCATGCTCTT 57.023 33.333 0.00 0.00 0.00 2.85
375 376 7.544804 AATTAAAAAGTTCCTTCCATGCTCT 57.455 32.000 0.00 0.00 0.00 4.09
376 377 9.705290 TTAAATTAAAAAGTTCCTTCCATGCTC 57.295 29.630 0.00 0.00 0.00 4.26
377 378 9.710900 CTTAAATTAAAAAGTTCCTTCCATGCT 57.289 29.630 0.00 0.00 0.00 3.79
378 379 9.489084 ACTTAAATTAAAAAGTTCCTTCCATGC 57.511 29.630 0.00 0.00 32.00 4.06
401 402 9.490083 AACTACACCACTCCTATATTCTTACTT 57.510 33.333 0.00 0.00 0.00 2.24
402 403 8.915036 CAACTACACCACTCCTATATTCTTACT 58.085 37.037 0.00 0.00 0.00 2.24
403 404 8.142551 CCAACTACACCACTCCTATATTCTTAC 58.857 40.741 0.00 0.00 0.00 2.34
404 405 7.289317 CCCAACTACACCACTCCTATATTCTTA 59.711 40.741 0.00 0.00 0.00 2.10
405 406 6.099845 CCCAACTACACCACTCCTATATTCTT 59.900 42.308 0.00 0.00 0.00 2.52
406 407 5.602978 CCCAACTACACCACTCCTATATTCT 59.397 44.000 0.00 0.00 0.00 2.40
407 408 5.601313 TCCCAACTACACCACTCCTATATTC 59.399 44.000 0.00 0.00 0.00 1.75
408 409 5.535029 TCCCAACTACACCACTCCTATATT 58.465 41.667 0.00 0.00 0.00 1.28
409 410 5.152306 TCCCAACTACACCACTCCTATAT 57.848 43.478 0.00 0.00 0.00 0.86
410 411 4.613265 TCCCAACTACACCACTCCTATA 57.387 45.455 0.00 0.00 0.00 1.31
411 412 3.484953 TCCCAACTACACCACTCCTAT 57.515 47.619 0.00 0.00 0.00 2.57
412 413 3.170717 CTTCCCAACTACACCACTCCTA 58.829 50.000 0.00 0.00 0.00 2.94
413 414 1.978580 CTTCCCAACTACACCACTCCT 59.021 52.381 0.00 0.00 0.00 3.69
414 415 1.610886 GCTTCCCAACTACACCACTCC 60.611 57.143 0.00 0.00 0.00 3.85
415 416 1.071699 TGCTTCCCAACTACACCACTC 59.928 52.381 0.00 0.00 0.00 3.51
416 417 1.136828 TGCTTCCCAACTACACCACT 58.863 50.000 0.00 0.00 0.00 4.00
417 418 1.235724 GTGCTTCCCAACTACACCAC 58.764 55.000 0.00 0.00 0.00 4.16
418 419 0.840617 TGTGCTTCCCAACTACACCA 59.159 50.000 0.00 0.00 0.00 4.17
419 420 2.200373 ATGTGCTTCCCAACTACACC 57.800 50.000 0.00 0.00 0.00 4.16
420 421 4.202245 TCTATGTGCTTCCCAACTACAC 57.798 45.455 0.00 0.00 0.00 2.90
421 422 4.469586 TCATCTATGTGCTTCCCAACTACA 59.530 41.667 0.00 0.00 0.00 2.74
422 423 5.023533 TCATCTATGTGCTTCCCAACTAC 57.976 43.478 0.00 0.00 0.00 2.73
423 424 5.692115 TTCATCTATGTGCTTCCCAACTA 57.308 39.130 0.00 0.00 0.00 2.24
424 425 4.574674 TTCATCTATGTGCTTCCCAACT 57.425 40.909 0.00 0.00 0.00 3.16
425 426 4.883585 TGATTCATCTATGTGCTTCCCAAC 59.116 41.667 0.00 0.00 0.00 3.77
426 427 5.114764 TGATTCATCTATGTGCTTCCCAA 57.885 39.130 0.00 0.00 0.00 4.12
427 428 4.445305 CCTGATTCATCTATGTGCTTCCCA 60.445 45.833 0.00 0.00 0.00 4.37
428 429 4.070716 CCTGATTCATCTATGTGCTTCCC 58.929 47.826 0.00 0.00 0.00 3.97
429 430 4.070716 CCCTGATTCATCTATGTGCTTCC 58.929 47.826 0.00 0.00 0.00 3.46
430 431 4.712476 ACCCTGATTCATCTATGTGCTTC 58.288 43.478 0.00 0.00 0.00 3.86
431 432 4.785346 ACCCTGATTCATCTATGTGCTT 57.215 40.909 0.00 0.00 0.00 3.91
432 433 4.655649 TGTACCCTGATTCATCTATGTGCT 59.344 41.667 0.00 0.00 0.00 4.40
433 434 4.960938 TGTACCCTGATTCATCTATGTGC 58.039 43.478 0.00 0.00 0.00 4.57
434 435 8.534496 TCATATGTACCCTGATTCATCTATGTG 58.466 37.037 1.90 0.00 0.00 3.21
435 436 8.670521 TCATATGTACCCTGATTCATCTATGT 57.329 34.615 1.90 0.00 0.00 2.29
436 437 9.376075 GTTCATATGTACCCTGATTCATCTATG 57.624 37.037 1.90 0.00 0.00 2.23
437 438 8.543774 GGTTCATATGTACCCTGATTCATCTAT 58.456 37.037 18.28 0.00 30.30 1.98
438 439 7.907389 GGTTCATATGTACCCTGATTCATCTA 58.093 38.462 18.28 0.00 30.30 1.98
439 440 6.773638 GGTTCATATGTACCCTGATTCATCT 58.226 40.000 18.28 0.00 30.30 2.90
450 451 6.827586 TTTCAAAGTGGGTTCATATGTACC 57.172 37.500 20.26 20.26 35.09 3.34
451 452 8.138712 TGTTTTTCAAAGTGGGTTCATATGTAC 58.861 33.333 1.90 3.04 0.00 2.90
452 453 8.239038 TGTTTTTCAAAGTGGGTTCATATGTA 57.761 30.769 1.90 0.00 0.00 2.29
453 454 7.118496 TGTTTTTCAAAGTGGGTTCATATGT 57.882 32.000 1.90 0.00 0.00 2.29
454 455 9.874205 ATATGTTTTTCAAAGTGGGTTCATATG 57.126 29.630 0.00 0.00 0.00 1.78
457 458 9.625747 AAAATATGTTTTTCAAAGTGGGTTCAT 57.374 25.926 0.00 0.00 33.89 2.57
494 495 6.121590 ACCATGCAACCTTTTTCAGATTTTT 58.878 32.000 0.00 0.00 0.00 1.94
495 496 5.683681 ACCATGCAACCTTTTTCAGATTTT 58.316 33.333 0.00 0.00 0.00 1.82
496 497 5.294734 ACCATGCAACCTTTTTCAGATTT 57.705 34.783 0.00 0.00 0.00 2.17
497 498 4.961438 ACCATGCAACCTTTTTCAGATT 57.039 36.364 0.00 0.00 0.00 2.40
498 499 4.082787 CGTACCATGCAACCTTTTTCAGAT 60.083 41.667 0.00 0.00 0.00 2.90
499 500 3.252215 CGTACCATGCAACCTTTTTCAGA 59.748 43.478 0.00 0.00 0.00 3.27
500 501 3.004315 ACGTACCATGCAACCTTTTTCAG 59.996 43.478 0.00 0.00 0.00 3.02
501 502 2.952978 ACGTACCATGCAACCTTTTTCA 59.047 40.909 0.00 0.00 0.00 2.69
502 503 3.252458 AGACGTACCATGCAACCTTTTTC 59.748 43.478 0.00 0.00 0.00 2.29
503 504 3.219281 AGACGTACCATGCAACCTTTTT 58.781 40.909 0.00 0.00 0.00 1.94
504 505 2.812011 GAGACGTACCATGCAACCTTTT 59.188 45.455 0.00 0.00 0.00 2.27
505 506 2.423577 GAGACGTACCATGCAACCTTT 58.576 47.619 0.00 0.00 0.00 3.11
506 507 1.338769 GGAGACGTACCATGCAACCTT 60.339 52.381 0.00 0.00 0.00 3.50
507 508 0.249398 GGAGACGTACCATGCAACCT 59.751 55.000 0.00 0.00 0.00 3.50
508 509 0.036765 TGGAGACGTACCATGCAACC 60.037 55.000 9.47 0.00 32.03 3.77
509 510 1.076332 GTGGAGACGTACCATGCAAC 58.924 55.000 15.34 1.33 39.69 4.17
510 511 0.389296 CGTGGAGACGTACCATGCAA 60.389 55.000 16.77 0.00 40.91 4.08
511 512 1.214325 CGTGGAGACGTACCATGCA 59.786 57.895 16.77 0.00 40.91 3.96
512 513 4.088421 CGTGGAGACGTACCATGC 57.912 61.111 16.77 6.28 40.91 4.06
521 522 1.796459 ACGCACATAAAACGTGGAGAC 59.204 47.619 0.00 0.00 38.85 3.36
522 523 2.157834 ACGCACATAAAACGTGGAGA 57.842 45.000 0.00 0.00 38.85 3.71
527 528 3.815337 TTATGCACGCACATAAAACGT 57.185 38.095 7.94 0.00 39.07 3.99
528 529 4.155449 ACTTTATGCACGCACATAAAACG 58.845 39.130 18.56 12.96 46.46 3.60
529 530 6.143118 TGAAACTTTATGCACGCACATAAAAC 59.857 34.615 18.56 12.83 46.46 2.43
530 531 6.209361 TGAAACTTTATGCACGCACATAAAA 58.791 32.000 18.56 6.50 46.46 1.52
531 532 5.763088 TGAAACTTTATGCACGCACATAAA 58.237 33.333 17.56 17.56 45.59 1.40
532 533 5.363979 TGAAACTTTATGCACGCACATAA 57.636 34.783 6.61 6.61 40.00 1.90
533 534 5.331098 CATGAAACTTTATGCACGCACATA 58.669 37.500 0.00 0.00 0.00 2.29
534 535 3.913548 TGAAACTTTATGCACGCACAT 57.086 38.095 0.00 0.00 0.00 3.21
535 536 3.563508 CATGAAACTTTATGCACGCACA 58.436 40.909 0.00 0.00 0.00 4.57
536 537 2.916716 CCATGAAACTTTATGCACGCAC 59.083 45.455 0.00 0.00 0.00 5.34
537 538 2.094803 CCCATGAAACTTTATGCACGCA 60.095 45.455 0.00 0.00 0.00 5.24
538 539 2.163412 TCCCATGAAACTTTATGCACGC 59.837 45.455 0.00 0.00 0.00 5.34
539 540 4.433186 TTCCCATGAAACTTTATGCACG 57.567 40.909 0.00 0.00 0.00 5.34
540 541 8.770438 TTATTTTCCCATGAAACTTTATGCAC 57.230 30.769 0.00 0.00 40.12 4.57
541 542 9.381033 CATTATTTTCCCATGAAACTTTATGCA 57.619 29.630 0.00 0.00 40.12 3.96
542 543 8.337532 GCATTATTTTCCCATGAAACTTTATGC 58.662 33.333 0.00 0.00 40.12 3.14
543 544 9.603921 AGCATTATTTTCCCATGAAACTTTATG 57.396 29.630 0.00 0.00 40.12 1.90
546 547 8.922931 AAAGCATTATTTTCCCATGAAACTTT 57.077 26.923 0.00 0.00 40.12 2.66
548 549 9.603921 CATAAAGCATTATTTTCCCATGAAACT 57.396 29.630 0.00 0.00 40.12 2.66
549 550 9.598517 TCATAAAGCATTATTTTCCCATGAAAC 57.401 29.630 0.00 0.00 40.12 2.78
550 551 9.598517 GTCATAAAGCATTATTTTCCCATGAAA 57.401 29.630 0.00 0.00 38.69 2.69
551 552 8.756927 TGTCATAAAGCATTATTTTCCCATGAA 58.243 29.630 0.00 0.00 29.08 2.57
552 553 8.303780 TGTCATAAAGCATTATTTTCCCATGA 57.696 30.769 0.00 0.00 29.08 3.07
553 554 8.984764 CATGTCATAAAGCATTATTTTCCCATG 58.015 33.333 0.00 0.00 29.08 3.66
554 555 8.707449 ACATGTCATAAAGCATTATTTTCCCAT 58.293 29.630 0.00 0.00 29.08 4.00
555 556 7.980662 CACATGTCATAAAGCATTATTTTCCCA 59.019 33.333 0.00 0.00 29.08 4.37
556 557 7.042523 GCACATGTCATAAAGCATTATTTTCCC 60.043 37.037 0.00 0.00 29.08 3.97
557 558 7.042523 GGCACATGTCATAAAGCATTATTTTCC 60.043 37.037 0.00 0.00 29.08 3.13
558 559 7.492020 TGGCACATGTCATAAAGCATTATTTTC 59.508 33.333 0.00 0.00 29.08 2.29
559 560 7.329499 TGGCACATGTCATAAAGCATTATTTT 58.671 30.769 0.00 0.00 29.08 1.82
560 561 6.876155 TGGCACATGTCATAAAGCATTATTT 58.124 32.000 0.00 0.00 29.08 1.40
561 562 6.468333 TGGCACATGTCATAAAGCATTATT 57.532 33.333 0.00 0.00 29.08 1.40
562 563 6.468333 TTGGCACATGTCATAAAGCATTAT 57.532 33.333 0.00 0.00 39.30 1.28
563 564 5.911378 TTGGCACATGTCATAAAGCATTA 57.089 34.783 0.00 0.00 39.30 1.90
564 565 4.804868 TTGGCACATGTCATAAAGCATT 57.195 36.364 0.00 0.00 39.30 3.56
565 566 4.804868 TTTGGCACATGTCATAAAGCAT 57.195 36.364 0.00 0.00 39.30 3.79
566 567 4.558178 CTTTTGGCACATGTCATAAAGCA 58.442 39.130 0.00 0.00 39.30 3.91
567 568 3.928375 CCTTTTGGCACATGTCATAAAGC 59.072 43.478 0.00 0.00 39.30 3.51
568 569 5.163513 GTCCTTTTGGCACATGTCATAAAG 58.836 41.667 0.00 4.05 39.30 1.85
569 570 4.586421 TGTCCTTTTGGCACATGTCATAAA 59.414 37.500 0.00 0.00 39.30 1.40
570 571 4.148079 TGTCCTTTTGGCACATGTCATAA 58.852 39.130 0.00 0.00 39.30 1.90
571 572 3.760738 TGTCCTTTTGGCACATGTCATA 58.239 40.909 0.00 0.00 39.30 2.15
572 573 2.596346 TGTCCTTTTGGCACATGTCAT 58.404 42.857 0.00 0.00 39.30 3.06
573 574 2.064434 TGTCCTTTTGGCACATGTCA 57.936 45.000 0.00 0.00 39.30 3.58
574 575 3.451141 TTTGTCCTTTTGGCACATGTC 57.549 42.857 0.00 0.00 39.30 3.06
575 576 3.902881 TTTTGTCCTTTTGGCACATGT 57.097 38.095 0.00 0.00 39.30 3.21
595 596 9.853555 TCTAAATTGCATTTCACGACATAATTT 57.146 25.926 0.00 0.00 33.82 1.82
596 597 9.853555 TTCTAAATTGCATTTCACGACATAATT 57.146 25.926 0.00 0.00 33.82 1.40
597 598 9.507280 CTTCTAAATTGCATTTCACGACATAAT 57.493 29.630 0.00 0.00 33.82 1.28
598 599 7.484641 GCTTCTAAATTGCATTTCACGACATAA 59.515 33.333 0.00 0.00 33.82 1.90
599 600 6.966632 GCTTCTAAATTGCATTTCACGACATA 59.033 34.615 0.00 0.00 33.82 2.29
600 601 5.801947 GCTTCTAAATTGCATTTCACGACAT 59.198 36.000 0.00 0.00 33.82 3.06
601 602 5.153513 GCTTCTAAATTGCATTTCACGACA 58.846 37.500 0.00 0.00 33.82 4.35
602 603 5.153513 TGCTTCTAAATTGCATTTCACGAC 58.846 37.500 0.00 0.00 33.82 4.34
603 604 5.369685 TGCTTCTAAATTGCATTTCACGA 57.630 34.783 0.00 0.00 33.82 4.35
642 643 8.380630 AAAATGTCTTTTTATTTGCCTCCGCAA 61.381 33.333 0.00 0.00 43.17 4.85
643 644 2.887783 TGTCTTTTTATTTGCCTCCGCA 59.112 40.909 0.00 0.00 45.49 5.69
644 645 3.569250 TGTCTTTTTATTTGCCTCCGC 57.431 42.857 0.00 0.00 0.00 5.54
645 646 7.420184 AAAAATGTCTTTTTATTTGCCTCCG 57.580 32.000 0.00 0.00 41.59 4.63
673 674 1.371512 TGCGCGGCACAAGATTTTG 60.372 52.632 8.83 0.00 40.24 2.44
674 675 3.038280 TGCGCGGCACAAGATTTT 58.962 50.000 8.83 0.00 31.71 1.82
683 684 1.136356 CAAATATGTGTGCGCGGCA 59.864 52.632 8.83 3.20 35.60 5.69
684 685 2.223549 GCAAATATGTGTGCGCGGC 61.224 57.895 8.83 0.00 0.00 6.53
685 686 3.981303 GCAAATATGTGTGCGCGG 58.019 55.556 8.83 0.00 0.00 6.46
689 690 3.500982 ACATGTTCGCAAATATGTGTGC 58.499 40.909 0.00 0.00 43.21 4.57
690 691 6.721442 CATACATGTTCGCAAATATGTGTG 57.279 37.500 9.76 9.38 44.16 3.82
691 692 5.163673 TGCATACATGTTCGCAAATATGTGT 60.164 36.000 16.84 0.53 44.16 3.72
692 693 5.272397 TGCATACATGTTCGCAAATATGTG 58.728 37.500 16.84 0.00 44.16 3.21
693 694 5.497635 TGCATACATGTTCGCAAATATGT 57.502 34.783 16.84 5.08 45.65 2.29
694 695 6.996562 ATTGCATACATGTTCGCAAATATG 57.003 33.333 27.88 14.91 46.46 1.78
695 696 9.695526 ATTTATTGCATACATGTTCGCAAATAT 57.304 25.926 27.88 20.32 46.46 1.28
696 697 9.526713 AATTTATTGCATACATGTTCGCAAATA 57.473 25.926 27.88 19.37 46.46 1.40
697 698 8.422973 AATTTATTGCATACATGTTCGCAAAT 57.577 26.923 27.88 18.64 46.46 2.32
698 699 7.824704 AATTTATTGCATACATGTTCGCAAA 57.175 28.000 27.88 17.58 46.46 3.68
700 701 7.758980 AGAAAATTTATTGCATACATGTTCGCA 59.241 29.630 15.60 15.60 28.87 5.10
701 702 8.118893 AGAAAATTTATTGCATACATGTTCGC 57.881 30.769 2.30 8.02 28.87 4.70
743 744 9.102757 TGCACTCATTTTAAGCATGTTTTTAAA 57.897 25.926 0.00 4.31 0.00 1.52
744 745 8.654230 TGCACTCATTTTAAGCATGTTTTTAA 57.346 26.923 0.00 0.00 0.00 1.52
745 746 8.140628 TCTGCACTCATTTTAAGCATGTTTTTA 58.859 29.630 0.00 0.00 34.35 1.52
746 747 6.985645 TCTGCACTCATTTTAAGCATGTTTTT 59.014 30.769 0.00 0.00 34.35 1.94
747 748 6.514947 TCTGCACTCATTTTAAGCATGTTTT 58.485 32.000 0.00 0.00 34.35 2.43
748 749 6.088016 TCTGCACTCATTTTAAGCATGTTT 57.912 33.333 0.00 0.00 34.35 2.83
749 750 5.710513 TCTGCACTCATTTTAAGCATGTT 57.289 34.783 0.00 0.00 34.35 2.71
750 751 5.909621 ATCTGCACTCATTTTAAGCATGT 57.090 34.783 0.00 0.00 34.35 3.21
751 752 6.204359 GGTATCTGCACTCATTTTAAGCATG 58.796 40.000 0.00 0.00 34.35 4.06
752 753 5.300286 GGGTATCTGCACTCATTTTAAGCAT 59.700 40.000 0.00 0.00 34.35 3.79
753 754 4.640201 GGGTATCTGCACTCATTTTAAGCA 59.360 41.667 0.00 0.00 0.00 3.91
754 755 4.036852 GGGGTATCTGCACTCATTTTAAGC 59.963 45.833 0.00 0.00 0.00 3.09
755 756 5.297776 CAGGGGTATCTGCACTCATTTTAAG 59.702 44.000 0.00 0.00 0.00 1.85
756 757 5.192927 CAGGGGTATCTGCACTCATTTTAA 58.807 41.667 0.00 0.00 0.00 1.52
757 758 4.780815 CAGGGGTATCTGCACTCATTTTA 58.219 43.478 0.00 0.00 0.00 1.52
758 759 3.624777 CAGGGGTATCTGCACTCATTTT 58.375 45.455 0.00 0.00 0.00 1.82
759 760 3.287867 CAGGGGTATCTGCACTCATTT 57.712 47.619 0.00 0.00 0.00 2.32
768 769 1.760613 TCCTAAACGCAGGGGTATCTG 59.239 52.381 0.00 0.00 36.26 2.90
769 770 1.761198 GTCCTAAACGCAGGGGTATCT 59.239 52.381 0.00 0.00 36.26 1.98
770 771 1.537562 CGTCCTAAACGCAGGGGTATC 60.538 57.143 0.00 0.00 45.76 2.24
771 772 0.462789 CGTCCTAAACGCAGGGGTAT 59.537 55.000 0.00 0.00 45.76 2.73
772 773 1.892338 CGTCCTAAACGCAGGGGTA 59.108 57.895 0.00 0.00 45.76 3.69
773 774 2.660802 CGTCCTAAACGCAGGGGT 59.339 61.111 0.00 0.00 45.76 4.95
781 782 1.012486 CGAGTGGGCACGTCCTAAAC 61.012 60.000 0.00 0.00 36.20 2.01
782 783 1.290955 CGAGTGGGCACGTCCTAAA 59.709 57.895 0.00 0.00 36.20 1.85
783 784 0.608856 TACGAGTGGGCACGTCCTAA 60.609 55.000 0.00 0.00 41.72 2.69
784 785 1.002257 TACGAGTGGGCACGTCCTA 60.002 57.895 0.00 0.00 41.72 2.94
785 786 2.282674 TACGAGTGGGCACGTCCT 60.283 61.111 0.00 0.00 41.72 3.85
786 787 2.151049 AACTACGAGTGGGCACGTCC 62.151 60.000 0.00 0.00 41.72 4.79
787 788 1.007336 CAACTACGAGTGGGCACGTC 61.007 60.000 0.00 0.00 41.72 4.34
788 789 1.006571 CAACTACGAGTGGGCACGT 60.007 57.895 0.00 0.00 43.70 4.49
789 790 1.736645 CCAACTACGAGTGGGCACG 60.737 63.158 0.00 0.00 31.40 5.34
790 791 1.375523 CCCAACTACGAGTGGGCAC 60.376 63.158 0.00 0.00 38.02 5.01
791 792 1.122632 TTCCCAACTACGAGTGGGCA 61.123 55.000 3.73 0.00 38.02 5.36
792 793 0.035739 TTTCCCAACTACGAGTGGGC 59.964 55.000 3.73 0.00 38.02 5.36
793 794 2.290071 ACATTTCCCAACTACGAGTGGG 60.290 50.000 2.09 2.09 39.12 4.61
794 795 3.053831 ACATTTCCCAACTACGAGTGG 57.946 47.619 0.00 0.00 0.00 4.00
795 796 4.570772 CCATACATTTCCCAACTACGAGTG 59.429 45.833 0.00 0.00 0.00 3.51
796 797 4.468510 TCCATACATTTCCCAACTACGAGT 59.531 41.667 0.00 0.00 0.00 4.18
797 798 5.018539 TCCATACATTTCCCAACTACGAG 57.981 43.478 0.00 0.00 0.00 4.18
798 799 5.129650 TCATCCATACATTTCCCAACTACGA 59.870 40.000 0.00 0.00 0.00 3.43
799 800 5.364778 TCATCCATACATTTCCCAACTACG 58.635 41.667 0.00 0.00 0.00 3.51
800 801 7.040409 GGATTCATCCATACATTTCCCAACTAC 60.040 40.741 0.51 0.00 46.38 2.73
801 802 7.004086 GGATTCATCCATACATTTCCCAACTA 58.996 38.462 0.51 0.00 46.38 2.24
802 803 5.835280 GGATTCATCCATACATTTCCCAACT 59.165 40.000 0.51 0.00 46.38 3.16
803 804 6.089249 GGATTCATCCATACATTTCCCAAC 57.911 41.667 0.51 0.00 46.38 3.77
817 818 6.313905 GGATTCATATGTACACGGATTCATCC 59.686 42.308 0.00 2.69 43.65 3.51
818 819 6.873605 TGGATTCATATGTACACGGATTCATC 59.126 38.462 0.00 0.00 0.00 2.92
819 820 6.768483 TGGATTCATATGTACACGGATTCAT 58.232 36.000 0.00 0.00 0.00 2.57
820 821 6.168270 TGGATTCATATGTACACGGATTCA 57.832 37.500 0.00 0.00 0.00 2.57
821 822 7.672983 AATGGATTCATATGTACACGGATTC 57.327 36.000 0.00 2.57 32.44 2.52
822 823 8.352201 CAAAATGGATTCATATGTACACGGATT 58.648 33.333 0.00 0.00 32.44 3.01
823 824 7.719193 TCAAAATGGATTCATATGTACACGGAT 59.281 33.333 0.00 0.00 32.44 4.18
824 825 7.051000 TCAAAATGGATTCATATGTACACGGA 58.949 34.615 0.00 0.00 32.44 4.69
825 826 7.258022 TCAAAATGGATTCATATGTACACGG 57.742 36.000 0.00 0.00 32.44 4.94
826 827 9.566530 TTTTCAAAATGGATTCATATGTACACG 57.433 29.630 0.00 0.00 32.44 4.49
883 884 4.584743 GTGGAGTTCTTTTTCTGGTGGAAT 59.415 41.667 0.00 0.00 33.53 3.01
888 889 2.943033 CACGTGGAGTTCTTTTTCTGGT 59.057 45.455 7.95 0.00 0.00 4.00
889 890 2.287009 GCACGTGGAGTTCTTTTTCTGG 60.287 50.000 18.88 0.00 0.00 3.86
892 893 2.096819 TGTGCACGTGGAGTTCTTTTTC 59.903 45.455 18.88 0.00 0.00 2.29
918 919 0.664466 GCTTTTTGTTCTCCGGCAGC 60.664 55.000 0.00 0.00 0.00 5.25
937 938 0.096628 CCTGACGACGGTAGTTCTCG 59.903 60.000 0.00 0.00 0.00 4.04
1061 1062 3.343326 TGGGGTTGGGGATTCCGG 61.343 66.667 0.00 0.00 38.76 5.14
1416 1498 3.547014 GGCTAAAAGCTGCTAAATCTCGC 60.547 47.826 0.90 0.00 41.99 5.03
1653 1744 2.903357 CCAGGCATCGCTGGTAGT 59.097 61.111 0.00 0.00 36.08 2.73
1663 1754 0.405585 AACACCAAGCTACCAGGCAT 59.594 50.000 0.00 0.00 34.17 4.40
1834 1926 7.141100 TCGAAATGGTTCTCTCCAATTAAAC 57.859 36.000 0.00 0.00 41.09 2.01
1861 1953 6.894339 TGAAGATACTCCTGCATTACGATA 57.106 37.500 0.00 0.00 0.00 2.92
1862 1954 5.791336 TGAAGATACTCCTGCATTACGAT 57.209 39.130 0.00 0.00 0.00 3.73
1916 2008 3.495983 CCCTCACCTGTGACATGTACAAA 60.496 47.826 0.00 0.00 35.46 2.83
1917 2009 2.038426 CCCTCACCTGTGACATGTACAA 59.962 50.000 0.00 0.00 35.46 2.41
1967 2059 3.481453 GGTAGGATTTGGATTCAGCTCC 58.519 50.000 0.00 0.00 35.74 4.70
2063 2155 3.507233 CACCATGTGCATACTGGAAACTT 59.493 43.478 16.35 0.00 32.68 2.66
2296 2393 8.755696 TGCATCACAAAAGGAACATAAAATAC 57.244 30.769 0.00 0.00 0.00 1.89
3188 3297 7.588497 AGAAATGGAATAAATAAGTCTGCCC 57.412 36.000 0.00 0.00 0.00 5.36
3676 3789 1.421268 AGATGCACAACTCAGGGAACA 59.579 47.619 0.00 0.00 0.00 3.18
3711 3824 9.425248 AATAATTGAGCCAAGGAATCTCATTAA 57.575 29.630 0.00 0.00 36.81 1.40
4425 4538 2.740447 GGGGTTGTTGAAGTATGTCGAC 59.260 50.000 9.11 9.11 33.16 4.20
4428 4541 4.254492 GAGAGGGGTTGTTGAAGTATGTC 58.746 47.826 0.00 0.00 0.00 3.06
4458 4571 4.583073 GTCCACTTTTAGGCCTTTTTGAGA 59.417 41.667 12.58 0.00 0.00 3.27
4506 4619 3.120338 TCTCGGCTTTCGCAGTTAAAATG 60.120 43.478 0.00 0.00 39.05 2.32
4967 5433 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
4968 5434 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4969 5435 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4970 5436 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4971 5437 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4972 5438 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4973 5439 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4974 5440 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4975 5441 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4976 5442 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4977 5443 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4978 5444 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4979 5445 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4980 5446 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4981 5447 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4982 5448 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4983 5449 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4984 5450 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4985 5451 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4986 5452 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4987 5453 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4988 5454 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4989 5455 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4990 5456 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4991 5457 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4992 5458 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4993 5459 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
4994 5460 0.250510 ACCACACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
4995 5461 1.728068 TACCACACACACACACACAC 58.272 50.000 0.00 0.00 0.00 3.82
4996 5462 2.700722 ATACCACACACACACACACA 57.299 45.000 0.00 0.00 0.00 3.72
4997 5463 4.311606 TCATATACCACACACACACACAC 58.688 43.478 0.00 0.00 0.00 3.82
4998 5464 4.562552 CCTCATATACCACACACACACACA 60.563 45.833 0.00 0.00 0.00 3.72
5656 6122 9.991388 CAAAAATTGAAGGTGCATTTATAATGG 57.009 29.630 0.00 0.00 0.00 3.16
6004 6479 5.920840 GCACCAAAATTTTAGGAAGTGAGTC 59.079 40.000 19.74 0.00 0.00 3.36
6073 6548 2.093658 GTCACGTATCCAACTGGTCCAT 60.094 50.000 0.00 0.00 36.34 3.41
6569 7046 2.749621 GTTCTTATCTGGCACACAAGGG 59.250 50.000 0.00 0.00 0.00 3.95
6660 7155 4.990426 CACCTTTGTATTTTTGCTTGGGAG 59.010 41.667 0.00 0.00 0.00 4.30
6698 7193 5.714806 TGATACCCCCAAAATTCAGAACTTC 59.285 40.000 0.00 0.00 0.00 3.01
6785 7280 7.876068 TCGAATGTTTGACTGAATAGTAAGGTT 59.124 33.333 0.00 0.00 37.25 3.50
6978 7474 0.035343 GGCCCTTGGAACCTAGACAC 60.035 60.000 0.00 0.00 0.00 3.67
7024 7520 2.007608 GAGTCGGCCTTAATCAACACC 58.992 52.381 0.00 0.00 0.00 4.16
7029 7525 2.690497 CTCAGAGAGTCGGCCTTAATCA 59.310 50.000 0.00 0.00 0.00 2.57
7061 7557 0.396139 TAGGACGTCCTACCGCCAAT 60.396 55.000 35.34 15.45 46.48 3.16
7074 7570 0.830648 TCCAAGCCATCCTTAGGACG 59.169 55.000 1.74 0.00 32.98 4.79
7075 7571 2.439507 TGATCCAAGCCATCCTTAGGAC 59.560 50.000 1.74 0.00 35.23 3.85
7076 7572 2.439507 GTGATCCAAGCCATCCTTAGGA 59.560 50.000 2.37 2.37 36.14 2.94
7077 7573 2.173356 TGTGATCCAAGCCATCCTTAGG 59.827 50.000 0.00 0.00 31.00 2.69
7145 7642 1.070914 GAGGCAGCCTAATACAGACCC 59.929 57.143 16.16 0.00 31.76 4.46
7151 7648 1.801178 GAATGCGAGGCAGCCTAATAC 59.199 52.381 16.16 4.65 43.65 1.89
7155 7652 1.153369 GTGAATGCGAGGCAGCCTA 60.153 57.895 16.16 0.00 43.65 3.93
7206 7703 1.229529 GGGAGAGGGGGAGACACAA 60.230 63.158 0.00 0.00 32.66 3.33
7209 7706 2.997584 CGAGGGAGAGGGGGAGACA 61.998 68.421 0.00 0.00 0.00 3.41
7214 7711 3.318922 AAGGACGAGGGAGAGGGGG 62.319 68.421 0.00 0.00 0.00 5.40
7244 7741 5.730550 ACGCATCCTTAACTAGTGATTTCA 58.269 37.500 0.00 0.00 0.00 2.69
7267 7764 3.990092 ACTCATAGTTTGCGACAAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
7305 7803 1.203376 TCACCTGTCCCTCCCATGTTA 60.203 52.381 0.00 0.00 0.00 2.41
7308 7806 0.911525 ACTCACCTGTCCCTCCCATG 60.912 60.000 0.00 0.00 0.00 3.66
7319 7817 5.894807 ACAAATGAAGAACAAACTCACCTG 58.105 37.500 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.