Multiple sequence alignment - TraesCS3A01G118400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G118400 chr3A 100.000 7075 0 0 1 7075 90305528 90298454 0.000000e+00 13066.0
1 TraesCS3A01G118400 chr3A 72.510 502 85 38 1 482 721671134 721670666 5.800000e-21 113.0
2 TraesCS3A01G118400 chr3B 94.871 4582 152 36 1 4508 123032126 123027554 0.000000e+00 7083.0
3 TraesCS3A01G118400 chr3B 96.520 2069 54 8 4609 6663 123027163 123025099 0.000000e+00 3406.0
4 TraesCS3A01G118400 chr3B 94.677 263 8 3 6818 7075 123025102 123024841 3.070000e-108 403.0
5 TraesCS3A01G118400 chr3B 79.960 499 62 27 135 618 620348141 620347666 4.090000e-87 333.0
6 TraesCS3A01G118400 chr3B 95.327 107 3 1 4506 4610 123027431 123027325 1.220000e-37 169.0
7 TraesCS3A01G118400 chr3B 98.795 83 1 0 6666 6748 416801315 416801397 1.590000e-31 148.0
8 TraesCS3A01G118400 chr3D 97.220 3849 85 13 2828 6663 75956270 75952431 0.000000e+00 6495.0
9 TraesCS3A01G118400 chr3D 95.224 2031 66 6 824 2828 75958692 75956667 0.000000e+00 3184.0
10 TraesCS3A01G118400 chr3D 84.854 1195 121 34 149 1323 75960569 75959415 0.000000e+00 1149.0
11 TraesCS3A01G118400 chr3D 91.304 230 20 0 6817 7046 75952435 75952206 1.480000e-81 315.0
12 TraesCS3A01G118400 chr6B 78.917 702 109 32 152 822 695847566 695846873 2.340000e-119 440.0
13 TraesCS3A01G118400 chr1D 80.678 590 72 31 152 727 455110601 455111162 3.050000e-113 420.0
14 TraesCS3A01G118400 chr2B 80.894 492 64 19 149 630 785903874 785903403 1.880000e-95 361.0
15 TraesCS3A01G118400 chr2B 78.078 593 83 32 149 727 464902196 464901637 1.470000e-86 331.0
16 TraesCS3A01G118400 chr5A 80.077 517 70 23 330 822 531393810 531394317 3.140000e-93 353.0
17 TraesCS3A01G118400 chr7D 79.921 508 69 25 149 643 610768006 610767519 6.800000e-90 342.0
18 TraesCS3A01G118400 chr7A 80.086 467 75 14 3978 4433 36646186 36646645 1.470000e-86 331.0
19 TraesCS3A01G118400 chr7A 85.455 165 7 1 6658 6822 448706389 448706242 9.500000e-34 156.0
20 TraesCS3A01G118400 chr7A 97.143 35 1 0 1632 1666 36645619 36645653 7.660000e-05 60.2
21 TraesCS3A01G118400 chr5B 84.150 347 41 14 149 490 615938448 615938785 2.460000e-84 324.0
22 TraesCS3A01G118400 chr4A 79.310 493 70 22 149 630 714401919 714402390 4.120000e-82 316.0
23 TraesCS3A01G118400 chr4A 94.505 91 5 0 6658 6748 657488583 657488493 2.660000e-29 141.0
24 TraesCS3A01G118400 chr2A 77.984 377 62 18 332 694 145389474 145389105 4.300000e-52 217.0
25 TraesCS3A01G118400 chr2A 94.624 93 5 0 6656 6748 536269653 536269561 2.060000e-30 145.0
26 TraesCS3A01G118400 chr2A 100.000 29 0 0 54 82 21000223 21000195 4.000000e-03 54.7
27 TraesCS3A01G118400 chrUn 98.795 83 1 0 6666 6748 136397331 136397249 1.590000e-31 148.0
28 TraesCS3A01G118400 chr5D 95.652 92 4 0 6657 6748 469406938 469407029 1.590000e-31 148.0
29 TraesCS3A01G118400 chr5D 96.471 85 3 0 6664 6748 72208730 72208646 2.660000e-29 141.0
30 TraesCS3A01G118400 chr5D 75.879 199 34 13 641 831 217952585 217952393 9.780000e-14 89.8
31 TraesCS3A01G118400 chr1A 96.552 87 3 0 6662 6748 524395646 524395732 2.060000e-30 145.0
32 TraesCS3A01G118400 chr2D 93.478 92 6 0 6657 6748 432745909 432746000 3.440000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G118400 chr3A 90298454 90305528 7074 True 13066.00 13066 100.00000 1 7075 1 chr3A.!!$R1 7074
1 TraesCS3A01G118400 chr3B 123024841 123032126 7285 True 2765.25 7083 95.34875 1 7075 4 chr3B.!!$R2 7074
2 TraesCS3A01G118400 chr3D 75952206 75960569 8363 True 2785.75 6495 92.15050 149 7046 4 chr3D.!!$R1 6897
3 TraesCS3A01G118400 chr6B 695846873 695847566 693 True 440.00 440 78.91700 152 822 1 chr6B.!!$R1 670
4 TraesCS3A01G118400 chr1D 455110601 455111162 561 False 420.00 420 80.67800 152 727 1 chr1D.!!$F1 575
5 TraesCS3A01G118400 chr2B 464901637 464902196 559 True 331.00 331 78.07800 149 727 1 chr2B.!!$R1 578
6 TraesCS3A01G118400 chr5A 531393810 531394317 507 False 353.00 353 80.07700 330 822 1 chr5A.!!$F1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 2275 0.116342 GATTCCCCAAACCCCAACCT 59.884 55.000 0.00 0.0 0.00 3.50 F
1259 2582 0.251341 ATGGTTGGTTCTCACCCTGC 60.251 55.000 0.00 0.0 43.49 4.85 F
1722 3048 1.965754 GAACCTCGGCCTCTGCATCT 61.966 60.000 0.00 0.0 40.13 2.90 F
2546 3894 3.330405 TGATTTCTGTGATCCCAGTCCAA 59.670 43.478 5.05 0.0 34.02 3.53 F
3269 5015 3.788227 TCACTTTCACTGCTTATGGGT 57.212 42.857 0.00 0.0 0.00 4.51 F
3691 5437 3.928375 GCAATCTGGCATTCAATTCGTTT 59.072 39.130 0.00 0.0 0.00 3.60 F
5081 7128 3.679502 CCAAACTTGCCGGATTTTTCATC 59.320 43.478 5.05 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2584 3932 0.040067 GGAACAAAAGAGGCTGCACG 60.040 55.000 0.50 0.00 0.00 5.34 R
2836 4581 5.496133 GCACAGACATGCATCTCTATTTT 57.504 39.130 3.98 0.00 45.39 1.82 R
3691 5437 3.706594 ACAAGTCAGACCTGAGTTCTTCA 59.293 43.478 15.13 0.00 46.96 3.02 R
4056 5802 6.256321 CCCAATCCTATTGCAGAAATTTTTCG 59.744 38.462 0.00 0.00 41.92 3.46 R
5082 7129 1.839354 TGCCTCAATGGATAGCACTGA 59.161 47.619 0.00 0.00 38.35 3.41 R
5327 7375 2.814336 GAGATCTTGCCGGAAAAACACT 59.186 45.455 5.05 0.00 0.00 3.55 R
6747 8802 0.107165 CACCTCCTTCCGGAATTCCC 60.107 60.000 19.21 1.46 39.29 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 115 6.199937 ACATGGTCAACATTCTTTCTATGC 57.800 37.500 0.00 0.00 37.84 3.14
115 120 6.209192 TGGTCAACATTCTTTCTATGCACATT 59.791 34.615 0.00 0.00 0.00 2.71
116 121 7.092716 GGTCAACATTCTTTCTATGCACATTT 58.907 34.615 0.00 0.00 0.00 2.32
439 500 9.592196 AATACATGGGCAACATTCTTTCTATAT 57.408 29.630 0.00 0.00 37.84 0.86
858 960 4.201990 GCAAAACATTGTCCAAATTTGCCA 60.202 37.500 18.58 8.47 39.61 4.92
872 974 2.203480 GCCAAGGCAACCCACTGA 60.203 61.111 6.14 0.00 41.49 3.41
882 2205 2.011617 AACCCACTGAGCCAAAGCCT 62.012 55.000 0.00 0.00 41.25 4.58
901 2224 3.285484 CCTGCAGCAGATATTTCAAGGT 58.715 45.455 24.90 0.00 32.44 3.50
909 2232 4.686972 CAGATATTTCAAGGTCAGCGAGA 58.313 43.478 0.00 0.00 0.00 4.04
952 2275 0.116342 GATTCCCCAAACCCCAACCT 59.884 55.000 0.00 0.00 0.00 3.50
1205 2528 3.099171 CCCCAGGATTTCAGGCCA 58.901 61.111 5.01 0.00 0.00 5.36
1207 2530 0.468771 CCCCAGGATTTCAGGCCATC 60.469 60.000 5.01 0.00 0.00 3.51
1259 2582 0.251341 ATGGTTGGTTCTCACCCTGC 60.251 55.000 0.00 0.00 43.49 4.85
1277 2600 2.472049 GCGCGTCTCTTTGTGCTC 59.528 61.111 8.43 0.00 38.52 4.26
1490 2813 2.201732 ACGAGTATGTAAATGCTGCCG 58.798 47.619 0.00 0.00 0.00 5.69
1528 2851 3.358118 GGAAATTGGGTGTCGGGATTTA 58.642 45.455 0.00 0.00 0.00 1.40
1529 2852 3.958147 GGAAATTGGGTGTCGGGATTTAT 59.042 43.478 0.00 0.00 0.00 1.40
1563 2886 3.564225 GTGTCTTAAGTCTTGGGTGTTGG 59.436 47.826 1.63 0.00 0.00 3.77
1565 2888 4.409574 TGTCTTAAGTCTTGGGTGTTGGTA 59.590 41.667 1.63 0.00 0.00 3.25
1613 2936 6.637658 GTCTATTACCTGCTTGATTCGTCTAC 59.362 42.308 0.00 0.00 0.00 2.59
1705 3031 2.800970 GGGGGAAAGAGGGGAAGAA 58.199 57.895 0.00 0.00 0.00 2.52
1722 3048 1.965754 GAACCTCGGCCTCTGCATCT 61.966 60.000 0.00 0.00 40.13 2.90
1763 3089 4.647291 AACGTCGAACAAATCAGCTTAG 57.353 40.909 0.00 0.00 0.00 2.18
1777 3103 8.355913 CAAATCAGCTTAGAAAGAGGAAAAAGT 58.644 33.333 0.00 0.00 0.00 2.66
1778 3104 9.574516 AAATCAGCTTAGAAAGAGGAAAAAGTA 57.425 29.630 0.00 0.00 0.00 2.24
1894 3227 3.881952 ATGCACGCTCCAAGACGCA 62.882 57.895 0.00 0.00 0.00 5.24
2277 3625 4.547406 AACACGACTTTCTAAAACAGGC 57.453 40.909 0.00 0.00 0.00 4.85
2318 3666 3.621268 TGCTATTTCCGATTACACTGTGC 59.379 43.478 7.90 0.00 0.00 4.57
2546 3894 3.330405 TGATTTCTGTGATCCCAGTCCAA 59.670 43.478 5.05 0.00 34.02 3.53
2894 4639 6.484364 AAACAATTGAGTTCCTTTGGTCAT 57.516 33.333 13.59 0.00 0.00 3.06
3269 5015 3.788227 TCACTTTCACTGCTTATGGGT 57.212 42.857 0.00 0.00 0.00 4.51
3353 5099 9.680315 GTGTTATACATGTCACTAATAGGTCTC 57.320 37.037 0.00 0.00 0.00 3.36
3437 5183 7.334421 TCATCACTAGAAAATAAGGCTGTGAAC 59.666 37.037 0.00 0.00 36.88 3.18
3691 5437 3.928375 GCAATCTGGCATTCAATTCGTTT 59.072 39.130 0.00 0.00 0.00 3.60
3773 5519 4.613850 GCTTTCCCAATCGAAGACAAAGTC 60.614 45.833 0.00 0.00 42.51 3.01
3966 5712 4.020396 TGTTTGGTTTGCTGCAATATCCAT 60.020 37.500 24.08 0.00 0.00 3.41
4005 5751 7.287696 CACTAATGGATTAAACCTGGCCTATTT 59.712 37.037 3.32 4.44 0.00 1.40
4079 5825 7.816945 ACGAAAAATTTCTGCAATAGGATTG 57.183 32.000 4.54 0.00 35.07 2.67
4405 6151 8.522830 CACACAAATACAGGGATATCTTTTTGT 58.477 33.333 2.05 4.45 36.72 2.83
4602 6475 6.015918 TGACCAACCACCATCAATTTCTATT 58.984 36.000 0.00 0.00 0.00 1.73
4755 6791 8.378172 TGTTTGACTACCACAGATTCTTAAAG 57.622 34.615 0.00 0.00 0.00 1.85
4846 6882 8.814038 AGCATAAATCTCTTATTTGGACTTGT 57.186 30.769 0.00 0.00 0.00 3.16
5016 7060 6.707608 TGTGTTCTTAGCTGGCATCTATTATG 59.292 38.462 0.00 0.00 0.00 1.90
5081 7128 3.679502 CCAAACTTGCCGGATTTTTCATC 59.320 43.478 5.05 0.00 0.00 2.92
5082 7129 4.559153 CAAACTTGCCGGATTTTTCATCT 58.441 39.130 5.05 0.00 0.00 2.90
5564 7612 3.009033 TGCCTCTTACAGTGCAACCTATT 59.991 43.478 0.00 0.00 37.80 1.73
5639 7687 2.289010 GCCATTTAGCACAAGCCTGTTT 60.289 45.455 0.00 0.00 43.56 2.83
5794 7844 6.080682 TCCTGACTCTAGCTTCCATGAATAT 58.919 40.000 0.00 0.00 0.00 1.28
5828 7878 9.709495 AATATACTTGTTGAACATGCACAAAAT 57.291 25.926 10.66 4.53 0.00 1.82
5836 7886 9.619316 TGTTGAACATGCACAAAATATAAGTAC 57.381 29.630 0.00 0.00 0.00 2.73
6017 8070 0.304705 CTTTTGCGAACGACAGCACT 59.695 50.000 0.00 0.00 43.69 4.40
6201 8254 9.273016 TGACTTTAGCCATATAAACTAATGAGC 57.727 33.333 0.00 0.00 0.00 4.26
6216 8269 0.400213 TGAGCCCGTTTCATGGAAGT 59.600 50.000 0.00 0.00 0.00 3.01
6222 8275 3.673323 GCCCGTTTCATGGAAGTGAATTC 60.673 47.826 0.00 0.00 37.88 2.17
6268 8322 3.367703 CCATGGAATTGGTGCTGTTTCTC 60.368 47.826 5.56 0.00 31.74 2.87
6269 8323 3.228188 TGGAATTGGTGCTGTTTCTCT 57.772 42.857 0.00 0.00 0.00 3.10
6275 8329 0.514691 GGTGCTGTTTCTCTCAAGCG 59.485 55.000 0.00 0.00 0.00 4.68
6582 8637 9.672086 TTTTGTAAAATTTAGTCCGATCAGTTG 57.328 29.630 0.00 0.00 0.00 3.16
6627 8682 1.974957 TCACTTGCTGGTAGGCACTAA 59.025 47.619 0.00 0.00 45.48 2.24
6638 8693 4.814234 TGGTAGGCACTAAATAATTCTGCG 59.186 41.667 0.00 0.00 45.48 5.18
6663 8718 4.003648 CTCTGCACAAACCCTTACTTAGG 58.996 47.826 0.00 0.00 44.33 2.69
6672 8727 2.311124 CCTTACTTAGGGCCTGTTCG 57.689 55.000 18.53 3.92 40.67 3.95
6673 8728 1.134491 CCTTACTTAGGGCCTGTTCGG 60.134 57.143 18.53 6.59 40.67 4.30
6674 8729 1.829222 CTTACTTAGGGCCTGTTCGGA 59.171 52.381 18.53 0.00 33.16 4.55
6675 8730 2.170012 TACTTAGGGCCTGTTCGGAT 57.830 50.000 18.53 0.00 33.16 4.18
6676 8731 1.286248 ACTTAGGGCCTGTTCGGATT 58.714 50.000 18.53 0.00 33.16 3.01
6677 8732 1.209747 ACTTAGGGCCTGTTCGGATTC 59.790 52.381 18.53 0.00 33.16 2.52
6678 8733 0.544697 TTAGGGCCTGTTCGGATTCC 59.455 55.000 18.53 0.00 33.16 3.01
6679 8734 1.342672 TAGGGCCTGTTCGGATTCCC 61.343 60.000 18.53 0.00 33.86 3.97
6680 8735 2.680370 GGGCCTGTTCGGATTCCCT 61.680 63.158 0.84 0.00 31.66 4.20
6681 8736 1.153147 GGCCTGTTCGGATTCCCTC 60.153 63.158 0.00 0.00 33.16 4.30
6682 8737 1.153147 GCCTGTTCGGATTCCCTCC 60.153 63.158 0.00 0.00 41.07 4.30
6683 8738 1.527370 CCTGTTCGGATTCCCTCCC 59.473 63.158 0.00 0.00 41.49 4.30
6684 8739 1.527370 CTGTTCGGATTCCCTCCCC 59.473 63.158 0.00 0.00 41.49 4.81
6685 8740 0.983378 CTGTTCGGATTCCCTCCCCT 60.983 60.000 0.00 0.00 41.49 4.79
6686 8741 0.981277 TGTTCGGATTCCCTCCCCTC 60.981 60.000 0.00 0.00 41.49 4.30
6687 8742 1.384082 TTCGGATTCCCTCCCCTCC 60.384 63.158 0.00 0.00 41.49 4.30
6688 8743 2.040884 CGGATTCCCTCCCCTCCA 60.041 66.667 0.00 0.00 41.49 3.86
6689 8744 2.444256 CGGATTCCCTCCCCTCCAC 61.444 68.421 0.00 0.00 41.49 4.02
6690 8745 1.307866 GGATTCCCTCCCCTCCACA 60.308 63.158 0.00 0.00 38.19 4.17
6691 8746 0.919289 GGATTCCCTCCCCTCCACAA 60.919 60.000 0.00 0.00 38.19 3.33
6692 8747 0.256177 GATTCCCTCCCCTCCACAAC 59.744 60.000 0.00 0.00 0.00 3.32
6693 8748 0.178831 ATTCCCTCCCCTCCACAACT 60.179 55.000 0.00 0.00 0.00 3.16
6694 8749 0.840722 TTCCCTCCCCTCCACAACTC 60.841 60.000 0.00 0.00 0.00 3.01
6695 8750 2.301738 CCCTCCCCTCCACAACTCC 61.302 68.421 0.00 0.00 0.00 3.85
6696 8751 2.660064 CCTCCCCTCCACAACTCCG 61.660 68.421 0.00 0.00 0.00 4.63
6697 8752 3.316573 CTCCCCTCCACAACTCCGC 62.317 68.421 0.00 0.00 0.00 5.54
6698 8753 3.322466 CCCCTCCACAACTCCGCT 61.322 66.667 0.00 0.00 0.00 5.52
6699 8754 2.266055 CCCTCCACAACTCCGCTC 59.734 66.667 0.00 0.00 0.00 5.03
6700 8755 2.266055 CCTCCACAACTCCGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
6701 8756 2.266055 CTCCACAACTCCGCTCCC 59.734 66.667 0.00 0.00 0.00 4.30
6702 8757 3.649277 CTCCACAACTCCGCTCCCG 62.649 68.421 0.00 0.00 0.00 5.14
6714 8769 2.837291 CTCCCGGAGCTGGAGGAG 60.837 72.222 0.73 8.97 44.73 3.69
6722 8777 4.400961 GCTGGAGGAGCGGCAGTT 62.401 66.667 1.45 0.00 38.15 3.16
6723 8778 2.125350 CTGGAGGAGCGGCAGTTC 60.125 66.667 1.45 0.00 0.00 3.01
6724 8779 2.922503 TGGAGGAGCGGCAGTTCA 60.923 61.111 1.45 0.00 0.00 3.18
6725 8780 2.347490 GGAGGAGCGGCAGTTCAA 59.653 61.111 1.45 0.00 0.00 2.69
6726 8781 1.302511 GGAGGAGCGGCAGTTCAAA 60.303 57.895 1.45 0.00 0.00 2.69
6727 8782 0.889186 GGAGGAGCGGCAGTTCAAAA 60.889 55.000 1.45 0.00 0.00 2.44
6728 8783 1.168714 GAGGAGCGGCAGTTCAAAAT 58.831 50.000 1.45 0.00 0.00 1.82
6729 8784 1.131315 GAGGAGCGGCAGTTCAAAATC 59.869 52.381 1.45 0.00 0.00 2.17
6730 8785 0.179189 GGAGCGGCAGTTCAAAATCG 60.179 55.000 1.45 0.00 0.00 3.34
6731 8786 0.517316 GAGCGGCAGTTCAAAATCGT 59.483 50.000 1.45 0.00 0.00 3.73
6732 8787 0.238289 AGCGGCAGTTCAAAATCGTG 59.762 50.000 1.45 0.00 0.00 4.35
6733 8788 0.729140 GCGGCAGTTCAAAATCGTGG 60.729 55.000 0.00 0.00 0.00 4.94
6734 8789 0.871722 CGGCAGTTCAAAATCGTGGA 59.128 50.000 0.00 0.00 0.00 4.02
6735 8790 1.135972 CGGCAGTTCAAAATCGTGGAG 60.136 52.381 0.00 0.00 0.00 3.86
6736 8791 1.880027 GGCAGTTCAAAATCGTGGAGT 59.120 47.619 0.00 0.00 0.00 3.85
6737 8792 2.350772 GGCAGTTCAAAATCGTGGAGTG 60.351 50.000 0.00 0.00 31.43 3.51
6738 8793 2.350772 GCAGTTCAAAATCGTGGAGTGG 60.351 50.000 0.00 0.00 29.25 4.00
6739 8794 2.226437 CAGTTCAAAATCGTGGAGTGGG 59.774 50.000 0.00 0.00 0.00 4.61
6740 8795 1.539827 GTTCAAAATCGTGGAGTGGGG 59.460 52.381 0.00 0.00 0.00 4.96
6741 8796 1.060729 TCAAAATCGTGGAGTGGGGA 58.939 50.000 0.00 0.00 0.00 4.81
6742 8797 1.422024 TCAAAATCGTGGAGTGGGGAA 59.578 47.619 0.00 0.00 0.00 3.97
6743 8798 1.812571 CAAAATCGTGGAGTGGGGAAG 59.187 52.381 0.00 0.00 0.00 3.46
6744 8799 0.328258 AAATCGTGGAGTGGGGAAGG 59.672 55.000 0.00 0.00 0.00 3.46
6745 8800 0.546747 AATCGTGGAGTGGGGAAGGA 60.547 55.000 0.00 0.00 0.00 3.36
6746 8801 0.978146 ATCGTGGAGTGGGGAAGGAG 60.978 60.000 0.00 0.00 0.00 3.69
6747 8802 2.660064 CGTGGAGTGGGGAAGGAGG 61.660 68.421 0.00 0.00 0.00 4.30
6748 8803 2.124996 TGGAGTGGGGAAGGAGGG 59.875 66.667 0.00 0.00 0.00 4.30
6749 8804 2.692741 GGAGTGGGGAAGGAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
6750 8805 2.454941 GAGTGGGGAAGGAGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
6751 8806 1.229853 GAGTGGGGAAGGAGGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
6752 8807 0.624795 GAGTGGGGAAGGAGGGGAAT 60.625 60.000 0.00 0.00 0.00 3.01
6753 8808 0.178801 AGTGGGGAAGGAGGGGAATT 60.179 55.000 0.00 0.00 0.00 2.17
6754 8809 0.259065 GTGGGGAAGGAGGGGAATTC 59.741 60.000 0.00 0.00 0.00 2.17
6755 8810 0.924226 TGGGGAAGGAGGGGAATTCC 60.924 60.000 16.74 16.74 41.51 3.01
6756 8811 1.532238 GGGAAGGAGGGGAATTCCG 59.468 63.158 18.30 0.00 42.87 4.30
6757 8812 1.532238 GGAAGGAGGGGAATTCCGG 59.468 63.158 18.30 0.00 39.77 5.14
6758 8813 0.986550 GGAAGGAGGGGAATTCCGGA 60.987 60.000 18.30 0.00 39.77 5.14
6759 8814 0.916809 GAAGGAGGGGAATTCCGGAA 59.083 55.000 21.37 21.37 39.77 4.30
6760 8815 0.919710 AAGGAGGGGAATTCCGGAAG 59.080 55.000 23.47 0.00 39.77 3.46
6780 8835 2.307934 GAGGTGCTCCACAGATTCTC 57.692 55.000 7.70 0.00 35.86 2.87
6781 8836 1.830477 GAGGTGCTCCACAGATTCTCT 59.170 52.381 7.70 0.00 35.86 3.10
6782 8837 3.027412 GAGGTGCTCCACAGATTCTCTA 58.973 50.000 7.70 0.00 35.86 2.43
6783 8838 3.445008 AGGTGCTCCACAGATTCTCTAA 58.555 45.455 7.70 0.00 35.86 2.10
6784 8839 4.036518 AGGTGCTCCACAGATTCTCTAAT 58.963 43.478 7.70 0.00 35.86 1.73
6785 8840 4.472833 AGGTGCTCCACAGATTCTCTAATT 59.527 41.667 7.70 0.00 35.86 1.40
6786 8841 5.045286 AGGTGCTCCACAGATTCTCTAATTT 60.045 40.000 7.70 0.00 35.86 1.82
6787 8842 5.295540 GGTGCTCCACAGATTCTCTAATTTC 59.704 44.000 0.00 0.00 35.86 2.17
6788 8843 5.877012 GTGCTCCACAGATTCTCTAATTTCA 59.123 40.000 0.00 0.00 34.08 2.69
6789 8844 5.877012 TGCTCCACAGATTCTCTAATTTCAC 59.123 40.000 0.00 0.00 0.00 3.18
6790 8845 5.006165 GCTCCACAGATTCTCTAATTTCACG 59.994 44.000 0.00 0.00 0.00 4.35
6791 8846 5.419542 TCCACAGATTCTCTAATTTCACGG 58.580 41.667 0.00 0.00 0.00 4.94
6792 8847 5.186992 TCCACAGATTCTCTAATTTCACGGA 59.813 40.000 0.00 0.00 0.00 4.69
6793 8848 6.051717 CCACAGATTCTCTAATTTCACGGAT 58.948 40.000 0.00 0.00 0.00 4.18
6794 8849 6.201806 CCACAGATTCTCTAATTTCACGGATC 59.798 42.308 0.00 0.00 0.00 3.36
6795 8850 5.980116 ACAGATTCTCTAATTTCACGGATCG 59.020 40.000 0.00 0.00 0.00 3.69
6796 8851 5.403766 CAGATTCTCTAATTTCACGGATCGG 59.596 44.000 0.00 0.00 0.00 4.18
6797 8852 3.728076 TCTCTAATTTCACGGATCGGG 57.272 47.619 5.18 0.00 0.00 5.14
6798 8853 3.293337 TCTCTAATTTCACGGATCGGGA 58.707 45.455 5.18 0.00 37.57 5.14
6799 8854 3.318275 TCTCTAATTTCACGGATCGGGAG 59.682 47.826 5.18 0.00 41.43 4.30
6800 8855 2.364324 TCTAATTTCACGGATCGGGAGG 59.636 50.000 5.18 0.00 41.43 4.30
6801 8856 1.200519 AATTTCACGGATCGGGAGGA 58.799 50.000 5.18 0.00 41.43 3.71
6802 8857 1.424638 ATTTCACGGATCGGGAGGAT 58.575 50.000 5.18 0.00 41.43 3.24
6803 8858 1.200519 TTTCACGGATCGGGAGGATT 58.799 50.000 5.18 0.00 41.43 3.01
6804 8859 2.076207 TTCACGGATCGGGAGGATTA 57.924 50.000 5.18 0.00 41.43 1.75
6805 8860 1.325355 TCACGGATCGGGAGGATTAC 58.675 55.000 5.18 0.00 32.99 1.89
6806 8861 0.317479 CACGGATCGGGAGGATTACC 59.683 60.000 5.18 0.00 34.82 2.85
6813 8868 3.774616 GGGAGGATTACCGAACACC 57.225 57.895 0.00 0.00 41.83 4.16
6814 8869 0.179702 GGGAGGATTACCGAACACCC 59.820 60.000 0.00 0.00 41.83 4.61
6815 8870 0.179702 GGAGGATTACCGAACACCCC 59.820 60.000 0.00 0.00 41.83 4.95
6816 8871 1.201424 GAGGATTACCGAACACCCCT 58.799 55.000 0.00 0.00 41.83 4.79
6817 8872 1.558294 GAGGATTACCGAACACCCCTT 59.442 52.381 0.00 0.00 41.83 3.95
6818 8873 1.990327 AGGATTACCGAACACCCCTTT 59.010 47.619 0.00 0.00 41.83 3.11
6819 8874 3.183801 AGGATTACCGAACACCCCTTTA 58.816 45.455 0.00 0.00 41.83 1.85
6820 8875 3.199289 AGGATTACCGAACACCCCTTTAG 59.801 47.826 0.00 0.00 41.83 1.85
6921 8976 5.194407 ACTTACCTAGTGGCAAGTCCAGC 62.194 52.174 0.00 0.00 44.40 4.85
6984 9039 5.941058 TGGCTTCCTTTCGAAATTATGTACA 59.059 36.000 11.70 0.00 0.00 2.90
7017 9072 5.047731 GCTTAAAGGGTTGAAAGAAGCATCT 60.048 40.000 0.00 0.00 38.14 2.90
7048 9103 0.316607 TTCGATTGTGTGTGTTGCGC 60.317 50.000 0.00 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 97 9.624697 TTAAATGTGCATAGAAAGAATGTTGAC 57.375 29.630 0.00 0.00 0.00 3.18
858 960 2.116125 GGCTCAGTGGGTTGCCTT 59.884 61.111 0.00 0.00 41.92 4.35
872 974 2.783122 ATCTGCTGCAGGCTTTGGCT 62.783 55.000 27.79 2.17 42.39 4.75
882 2205 3.943381 CTGACCTTGAAATATCTGCTGCA 59.057 43.478 0.88 0.88 0.00 4.41
888 2211 4.739137 GCTCTCGCTGACCTTGAAATATCT 60.739 45.833 0.00 0.00 0.00 1.98
893 2216 0.667487 CGCTCTCGCTGACCTTGAAA 60.667 55.000 0.00 0.00 0.00 2.69
909 2232 1.242076 GGGATATCAATTGCAGCGCT 58.758 50.000 2.64 2.64 0.00 5.92
952 2275 2.349755 GCTGTGGCGGGAAAGGTA 59.650 61.111 0.00 0.00 0.00 3.08
1185 2508 2.998097 CCTGAAATCCTGGGGCGA 59.002 61.111 0.00 0.00 0.00 5.54
1205 2528 3.180507 GGAATGAGGATAGGAGGCAGAT 58.819 50.000 0.00 0.00 0.00 2.90
1207 2530 1.274728 CGGAATGAGGATAGGAGGCAG 59.725 57.143 0.00 0.00 0.00 4.85
1259 2582 3.340721 GAGCACAAAGAGACGCGCG 62.341 63.158 30.96 30.96 0.00 6.86
1490 2813 6.406288 CCAATTTCCCAGATCTAAAAGGAAGC 60.406 42.308 12.73 0.00 37.86 3.86
1528 2851 5.079643 ACTTAAGACACAGGGCAAATTCAT 58.920 37.500 10.09 0.00 0.00 2.57
1529 2852 4.469657 ACTTAAGACACAGGGCAAATTCA 58.530 39.130 10.09 0.00 0.00 2.57
1563 2886 9.042008 ACATCCGTTATCACAATATTCAACTAC 57.958 33.333 0.00 0.00 0.00 2.73
1565 2888 7.987458 AGACATCCGTTATCACAATATTCAACT 59.013 33.333 0.00 0.00 0.00 3.16
1687 3010 0.331954 GTTCTTCCCCTCTTTCCCCC 59.668 60.000 0.00 0.00 0.00 5.40
1688 3011 0.331954 GGTTCTTCCCCTCTTTCCCC 59.668 60.000 0.00 0.00 0.00 4.81
1689 3012 1.282447 GAGGTTCTTCCCCTCTTTCCC 59.718 57.143 0.00 0.00 44.29 3.97
1705 3031 1.075970 TAGATGCAGAGGCCGAGGT 60.076 57.895 0.00 0.00 40.13 3.85
1722 3048 0.035534 ATTGGCCGTGTGCATCACTA 60.036 50.000 14.60 0.67 44.16 2.74
1732 3058 0.094046 GTTCGACGTTATTGGCCGTG 59.906 55.000 0.00 0.00 37.44 4.94
1894 3227 2.420687 CGGCTATTCCTTCTTGAAGGCT 60.421 50.000 21.16 14.25 39.80 4.58
2187 3535 6.149973 CAGATGCCATCAACTAGAAAGAAACA 59.850 38.462 7.56 0.00 0.00 2.83
2203 3551 5.061853 GTGTCATACTGAATCAGATGCCAT 58.938 41.667 18.20 0.00 35.18 4.40
2277 3625 5.112220 AGCATCAACAAACATACACACAG 57.888 39.130 0.00 0.00 0.00 3.66
2318 3666 6.989169 GGCTAATCTTCCAGTATGCCTATATG 59.011 42.308 0.00 0.00 36.52 1.78
2584 3932 0.040067 GGAACAAAAGAGGCTGCACG 60.040 55.000 0.50 0.00 0.00 5.34
2836 4581 5.496133 GCACAGACATGCATCTCTATTTT 57.504 39.130 3.98 0.00 45.39 1.82
3269 5015 4.144297 CACCTCCACCAAAGAAATCAAGA 58.856 43.478 0.00 0.00 0.00 3.02
3353 5099 6.594159 ACCCATCAGTAAAGATGTTTTCTACG 59.406 38.462 0.00 0.00 43.00 3.51
3437 5183 5.989249 TCTGAAAGAATGACAAACATGTCG 58.011 37.500 0.00 0.00 42.31 4.35
3691 5437 3.706594 ACAAGTCAGACCTGAGTTCTTCA 59.293 43.478 15.13 0.00 46.96 3.02
4056 5802 6.256321 CCCAATCCTATTGCAGAAATTTTTCG 59.744 38.462 0.00 0.00 41.92 3.46
4079 5825 9.899226 GTATTTATTATCAACAAGCTCATTCCC 57.101 33.333 0.00 0.00 0.00 3.97
4755 6791 4.878397 CCCTCTGATTACAAATGTGAGTCC 59.122 45.833 0.00 0.00 0.00 3.85
4846 6882 7.604549 TCAAAATAACTACGGTACACTGATGA 58.395 34.615 0.00 0.00 0.00 2.92
5016 7060 9.520204 AAAATACTGCATGCAACAAGTATTATC 57.480 29.630 28.84 0.00 33.69 1.75
5061 7108 4.280677 TGAGATGAAAAATCCGGCAAGTTT 59.719 37.500 0.00 0.00 0.00 2.66
5081 7128 2.158856 TGCCTCAATGGATAGCACTGAG 60.159 50.000 0.00 0.00 38.35 3.35
5082 7129 1.839354 TGCCTCAATGGATAGCACTGA 59.161 47.619 0.00 0.00 38.35 3.41
5179 7226 9.801873 AATGCCATAGTTTGTAAATACATTCAC 57.198 29.630 0.00 0.00 35.89 3.18
5184 7231 8.629158 GGATGAATGCCATAGTTTGTAAATACA 58.371 33.333 0.00 0.00 35.17 2.29
5327 7375 2.814336 GAGATCTTGCCGGAAAAACACT 59.186 45.455 5.05 0.00 0.00 3.55
5461 7509 7.581213 TGGTTAATTTCTGAACAGTCAACAT 57.419 32.000 1.73 0.00 31.88 2.71
5564 7612 6.605471 AGGCAATGATCGTAGTTCCATATA 57.395 37.500 0.00 0.00 0.00 0.86
5639 7687 6.127479 ACAGTAAGAAAACATTTCAAGGTGCA 60.127 34.615 5.71 0.00 0.00 4.57
5748 7796 6.015434 AGGAAACATTTCAAGGTGTGGATTAC 60.015 38.462 6.68 0.00 38.92 1.89
5749 7797 6.015519 CAGGAAACATTTCAAGGTGTGGATTA 60.016 38.462 6.68 0.00 38.92 1.75
5794 7844 8.882736 CATGTTCAACAAGTATATTAGCAGACA 58.117 33.333 0.00 0.00 0.00 3.41
6017 8070 1.539388 CAAGGACGGTATGCTGCAAAA 59.461 47.619 6.36 0.00 0.00 2.44
6201 8254 3.426159 CGAATTCACTTCCATGAAACGGG 60.426 47.826 6.22 0.00 41.78 5.28
6216 8269 3.252944 TGCTTTGTCATCTTGCGAATTCA 59.747 39.130 6.22 0.00 0.00 2.57
6222 8275 1.069973 TCGTTGCTTTGTCATCTTGCG 60.070 47.619 0.00 0.00 0.00 4.85
6268 8322 2.284684 GTCAGCATCAGATTCGCTTGAG 59.715 50.000 0.00 0.00 32.48 3.02
6269 8323 2.274437 GTCAGCATCAGATTCGCTTGA 58.726 47.619 0.00 0.00 32.48 3.02
6582 8637 5.723295 ACCAATTTCCTGTGCATTTGATAC 58.277 37.500 0.00 0.00 0.00 2.24
6638 8693 1.266989 GTAAGGGTTTGTGCAGAGTGC 59.733 52.381 0.00 0.00 45.29 4.40
6663 8718 1.153147 GAGGGAATCCGAACAGGCC 60.153 63.158 0.00 0.00 40.77 5.19
6664 8719 1.153147 GGAGGGAATCCGAACAGGC 60.153 63.158 0.00 0.00 38.67 4.85
6673 8728 0.256177 GTTGTGGAGGGGAGGGAATC 59.744 60.000 0.00 0.00 0.00 2.52
6674 8729 0.178831 AGTTGTGGAGGGGAGGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
6675 8730 0.840722 GAGTTGTGGAGGGGAGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
6676 8731 1.229529 GAGTTGTGGAGGGGAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
6677 8732 2.301738 GGAGTTGTGGAGGGGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
6678 8733 2.660064 CGGAGTTGTGGAGGGGAGG 61.660 68.421 0.00 0.00 0.00 4.30
6679 8734 2.982130 CGGAGTTGTGGAGGGGAG 59.018 66.667 0.00 0.00 0.00 4.30
6680 8735 3.319198 GCGGAGTTGTGGAGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
6681 8736 3.316573 GAGCGGAGTTGTGGAGGGG 62.317 68.421 0.00 0.00 0.00 4.79
6682 8737 2.266055 GAGCGGAGTTGTGGAGGG 59.734 66.667 0.00 0.00 0.00 4.30
6683 8738 2.266055 GGAGCGGAGTTGTGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
6684 8739 2.266055 GGGAGCGGAGTTGTGGAG 59.734 66.667 0.00 0.00 0.00 3.86
6685 8740 3.691342 CGGGAGCGGAGTTGTGGA 61.691 66.667 0.00 0.00 0.00 4.02
6686 8741 4.760047 CCGGGAGCGGAGTTGTGG 62.760 72.222 0.00 0.00 0.00 4.17
6687 8742 3.691342 TCCGGGAGCGGAGTTGTG 61.691 66.667 0.00 0.00 33.62 3.33
6705 8760 4.400961 AACTGCCGCTCCTCCAGC 62.401 66.667 0.00 0.00 45.85 4.85
6706 8761 2.125350 GAACTGCCGCTCCTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
6707 8762 2.050836 TTTGAACTGCCGCTCCTCCA 62.051 55.000 0.00 0.00 0.00 3.86
6708 8763 0.889186 TTTTGAACTGCCGCTCCTCC 60.889 55.000 0.00 0.00 0.00 4.30
6709 8764 1.131315 GATTTTGAACTGCCGCTCCTC 59.869 52.381 0.00 0.00 0.00 3.71
6710 8765 1.168714 GATTTTGAACTGCCGCTCCT 58.831 50.000 0.00 0.00 0.00 3.69
6711 8766 0.179189 CGATTTTGAACTGCCGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
6712 8767 0.517316 ACGATTTTGAACTGCCGCTC 59.483 50.000 0.00 0.00 0.00 5.03
6713 8768 0.238289 CACGATTTTGAACTGCCGCT 59.762 50.000 0.00 0.00 0.00 5.52
6714 8769 0.729140 CCACGATTTTGAACTGCCGC 60.729 55.000 0.00 0.00 0.00 6.53
6715 8770 0.871722 TCCACGATTTTGAACTGCCG 59.128 50.000 0.00 0.00 0.00 5.69
6716 8771 1.880027 ACTCCACGATTTTGAACTGCC 59.120 47.619 0.00 0.00 0.00 4.85
6717 8772 2.350772 CCACTCCACGATTTTGAACTGC 60.351 50.000 0.00 0.00 0.00 4.40
6718 8773 2.226437 CCCACTCCACGATTTTGAACTG 59.774 50.000 0.00 0.00 0.00 3.16
6719 8774 2.504367 CCCACTCCACGATTTTGAACT 58.496 47.619 0.00 0.00 0.00 3.01
6720 8775 1.539827 CCCCACTCCACGATTTTGAAC 59.460 52.381 0.00 0.00 0.00 3.18
6721 8776 1.422024 TCCCCACTCCACGATTTTGAA 59.578 47.619 0.00 0.00 0.00 2.69
6722 8777 1.060729 TCCCCACTCCACGATTTTGA 58.939 50.000 0.00 0.00 0.00 2.69
6723 8778 1.812571 CTTCCCCACTCCACGATTTTG 59.187 52.381 0.00 0.00 0.00 2.44
6724 8779 1.271926 CCTTCCCCACTCCACGATTTT 60.272 52.381 0.00 0.00 0.00 1.82
6725 8780 0.328258 CCTTCCCCACTCCACGATTT 59.672 55.000 0.00 0.00 0.00 2.17
6726 8781 0.546747 TCCTTCCCCACTCCACGATT 60.547 55.000 0.00 0.00 0.00 3.34
6727 8782 0.978146 CTCCTTCCCCACTCCACGAT 60.978 60.000 0.00 0.00 0.00 3.73
6728 8783 1.609501 CTCCTTCCCCACTCCACGA 60.610 63.158 0.00 0.00 0.00 4.35
6729 8784 2.660064 CCTCCTTCCCCACTCCACG 61.660 68.421 0.00 0.00 0.00 4.94
6730 8785 2.301738 CCCTCCTTCCCCACTCCAC 61.302 68.421 0.00 0.00 0.00 4.02
6731 8786 2.124996 CCCTCCTTCCCCACTCCA 59.875 66.667 0.00 0.00 0.00 3.86
6732 8787 2.692741 CCCCTCCTTCCCCACTCC 60.693 72.222 0.00 0.00 0.00 3.85
6733 8788 0.624795 ATTCCCCTCCTTCCCCACTC 60.625 60.000 0.00 0.00 0.00 3.51
6734 8789 0.178801 AATTCCCCTCCTTCCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
6735 8790 0.259065 GAATTCCCCTCCTTCCCCAC 59.741 60.000 0.00 0.00 0.00 4.61
6736 8791 0.924226 GGAATTCCCCTCCTTCCCCA 60.924 60.000 14.03 0.00 33.74 4.96
6737 8792 1.931296 GGAATTCCCCTCCTTCCCC 59.069 63.158 14.03 0.00 33.74 4.81
6738 8793 1.532238 CGGAATTCCCCTCCTTCCC 59.468 63.158 19.01 0.00 35.97 3.97
6739 8794 0.986550 TCCGGAATTCCCCTCCTTCC 60.987 60.000 19.01 0.00 36.01 3.46
6740 8795 0.916809 TTCCGGAATTCCCCTCCTTC 59.083 55.000 19.01 0.00 0.00 3.46
6741 8796 0.919710 CTTCCGGAATTCCCCTCCTT 59.080 55.000 19.21 0.00 0.00 3.36
6742 8797 0.988678 CCTTCCGGAATTCCCCTCCT 60.989 60.000 19.21 0.00 0.00 3.69
6743 8798 0.986550 TCCTTCCGGAATTCCCCTCC 60.987 60.000 19.21 0.00 36.03 4.30
6744 8799 0.470341 CTCCTTCCGGAATTCCCCTC 59.530 60.000 19.21 0.00 39.29 4.30
6745 8800 0.988678 CCTCCTTCCGGAATTCCCCT 60.989 60.000 19.21 0.00 39.29 4.79
6746 8801 1.279749 ACCTCCTTCCGGAATTCCCC 61.280 60.000 19.21 0.00 39.29 4.81
6747 8802 0.107165 CACCTCCTTCCGGAATTCCC 60.107 60.000 19.21 1.46 39.29 3.97
6748 8803 0.748367 GCACCTCCTTCCGGAATTCC 60.748 60.000 19.21 15.01 39.29 3.01
6749 8804 0.253327 AGCACCTCCTTCCGGAATTC 59.747 55.000 19.21 0.00 39.29 2.17
6750 8805 0.253327 GAGCACCTCCTTCCGGAATT 59.747 55.000 19.21 0.00 39.29 2.17
6751 8806 1.627297 GGAGCACCTCCTTCCGGAAT 61.627 60.000 19.21 0.00 46.41 3.01
6752 8807 2.291043 GGAGCACCTCCTTCCGGAA 61.291 63.158 17.73 17.73 46.41 4.30
6753 8808 2.683933 GGAGCACCTCCTTCCGGA 60.684 66.667 0.00 0.00 46.41 5.14
6761 8816 2.307934 GAGAATCTGTGGAGCACCTC 57.692 55.000 0.71 0.00 37.04 3.85
6774 8829 4.686554 CCCGATCCGTGAAATTAGAGAATC 59.313 45.833 0.00 0.00 0.00 2.52
6775 8830 4.344102 TCCCGATCCGTGAAATTAGAGAAT 59.656 41.667 0.00 0.00 0.00 2.40
6776 8831 3.702548 TCCCGATCCGTGAAATTAGAGAA 59.297 43.478 0.00 0.00 0.00 2.87
6777 8832 3.293337 TCCCGATCCGTGAAATTAGAGA 58.707 45.455 0.00 0.00 0.00 3.10
6778 8833 3.553096 CCTCCCGATCCGTGAAATTAGAG 60.553 52.174 0.00 0.00 0.00 2.43
6779 8834 2.364324 CCTCCCGATCCGTGAAATTAGA 59.636 50.000 0.00 0.00 0.00 2.10
6780 8835 2.364324 TCCTCCCGATCCGTGAAATTAG 59.636 50.000 0.00 0.00 0.00 1.73
6781 8836 2.390696 TCCTCCCGATCCGTGAAATTA 58.609 47.619 0.00 0.00 0.00 1.40
6782 8837 1.200519 TCCTCCCGATCCGTGAAATT 58.799 50.000 0.00 0.00 0.00 1.82
6783 8838 1.424638 ATCCTCCCGATCCGTGAAAT 58.575 50.000 0.00 0.00 0.00 2.17
6784 8839 1.200519 AATCCTCCCGATCCGTGAAA 58.799 50.000 0.00 0.00 0.00 2.69
6785 8840 1.684983 GTAATCCTCCCGATCCGTGAA 59.315 52.381 0.00 0.00 0.00 3.18
6786 8841 1.325355 GTAATCCTCCCGATCCGTGA 58.675 55.000 0.00 0.00 0.00 4.35
6787 8842 0.317479 GGTAATCCTCCCGATCCGTG 59.683 60.000 0.00 0.00 0.00 4.94
6788 8843 2.742746 GGTAATCCTCCCGATCCGT 58.257 57.895 0.00 0.00 0.00 4.69
6794 8849 0.179092 GGTGTTCGGTAATCCTCCCG 60.179 60.000 0.00 0.00 45.55 5.14
6795 8850 0.179702 GGGTGTTCGGTAATCCTCCC 59.820 60.000 0.00 0.00 0.00 4.30
6796 8851 0.179702 GGGGTGTTCGGTAATCCTCC 59.820 60.000 0.00 0.00 0.00 4.30
6797 8852 1.201424 AGGGGTGTTCGGTAATCCTC 58.799 55.000 0.00 0.00 0.00 3.71
6798 8853 1.665137 AAGGGGTGTTCGGTAATCCT 58.335 50.000 0.00 0.00 0.00 3.24
6799 8854 2.502142 AAAGGGGTGTTCGGTAATCC 57.498 50.000 0.00 0.00 0.00 3.01
6800 8855 4.212143 ACTAAAGGGGTGTTCGGTAATC 57.788 45.455 0.00 0.00 0.00 1.75
6801 8856 4.080919 GGTACTAAAGGGGTGTTCGGTAAT 60.081 45.833 0.00 0.00 0.00 1.89
6802 8857 3.260632 GGTACTAAAGGGGTGTTCGGTAA 59.739 47.826 0.00 0.00 0.00 2.85
6803 8858 2.831526 GGTACTAAAGGGGTGTTCGGTA 59.168 50.000 0.00 0.00 0.00 4.02
6804 8859 1.625315 GGTACTAAAGGGGTGTTCGGT 59.375 52.381 0.00 0.00 0.00 4.69
6805 8860 1.624813 TGGTACTAAAGGGGTGTTCGG 59.375 52.381 0.00 0.00 0.00 4.30
6806 8861 2.037511 TGTGGTACTAAAGGGGTGTTCG 59.962 50.000 0.00 0.00 0.00 3.95
6807 8862 3.775261 TGTGGTACTAAAGGGGTGTTC 57.225 47.619 0.00 0.00 0.00 3.18
6808 8863 4.523168 TTTGTGGTACTAAAGGGGTGTT 57.477 40.909 0.00 0.00 0.00 3.32
6809 8864 4.352893 AGATTTGTGGTACTAAAGGGGTGT 59.647 41.667 0.00 0.00 0.00 4.16
6810 8865 4.918588 AGATTTGTGGTACTAAAGGGGTG 58.081 43.478 0.00 0.00 0.00 4.61
6811 8866 5.594199 AAGATTTGTGGTACTAAAGGGGT 57.406 39.130 0.00 0.00 0.00 4.95
6812 8867 7.173032 AGTAAAGATTTGTGGTACTAAAGGGG 58.827 38.462 0.00 0.00 0.00 4.79
6813 8868 8.512138 CAAGTAAAGATTTGTGGTACTAAAGGG 58.488 37.037 0.00 0.00 0.00 3.95
6814 8869 9.063615 ACAAGTAAAGATTTGTGGTACTAAAGG 57.936 33.333 0.00 0.00 34.48 3.11
6817 8872 8.842280 CCAACAAGTAAAGATTTGTGGTACTAA 58.158 33.333 0.00 0.00 35.82 2.24
6818 8873 7.040961 GCCAACAAGTAAAGATTTGTGGTACTA 60.041 37.037 0.00 0.00 35.82 1.82
6819 8874 6.238925 GCCAACAAGTAAAGATTTGTGGTACT 60.239 38.462 0.00 0.00 35.82 2.73
6820 8875 5.918576 GCCAACAAGTAAAGATTTGTGGTAC 59.081 40.000 0.00 0.00 35.82 3.34
6921 8976 6.816640 TCGATGGTTGGTTTTGAGATAGTTAG 59.183 38.462 0.00 0.00 0.00 2.34
6984 9039 3.139077 CAACCCTTTAAGCTCTCAACGT 58.861 45.455 0.00 0.00 0.00 3.99
7017 9072 6.970043 CACACACAATCGAAAAGGTAAAAGAA 59.030 34.615 0.00 0.00 0.00 2.52
7048 9103 4.216902 TGTGCTCACAAGAATGGAATTCAG 59.783 41.667 7.93 0.00 45.34 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.