Multiple sequence alignment - TraesCS3A01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G118300 chr3A 100.000 3446 0 0 1 3446 90292311 90295756 0.000000e+00 6364.0
1 TraesCS3A01G118300 chr3A 91.304 1426 103 10 1011 2421 90364106 90365525 0.000000e+00 1927.0
2 TraesCS3A01G118300 chr3D 94.386 2173 76 20 350 2501 75946162 75948309 0.000000e+00 3295.0
3 TraesCS3A01G118300 chr3D 91.795 1426 94 12 1012 2421 75962120 75963538 0.000000e+00 1964.0
4 TraesCS3A01G118300 chr3D 93.269 208 8 4 2516 2722 75948372 75948574 5.590000e-78 302.0
5 TraesCS3A01G118300 chr3D 91.803 122 7 3 218 336 75945998 75946119 2.130000e-37 167.0
6 TraesCS3A01G118300 chr3D 87.500 48 2 4 2676 2722 246922753 246922797 6.000000e-03 52.8
7 TraesCS3A01G118300 chr3B 93.736 1820 69 14 1002 2787 122826274 122828082 0.000000e+00 2687.0
8 TraesCS3A01G118300 chr3B 92.406 1409 100 4 1016 2421 123033344 123034748 0.000000e+00 2002.0
9 TraesCS3A01G118300 chr3B 88.513 827 51 23 157 957 122825467 122826275 0.000000e+00 961.0
10 TraesCS3A01G118300 chr3B 84.116 447 38 15 2990 3434 123020307 123020722 5.360000e-108 401.0
11 TraesCS3A01G118300 chr3B 92.166 217 15 2 2782 2997 122828306 122828521 4.320000e-79 305.0
12 TraesCS3A01G118300 chr3B 100.000 30 0 0 2693 2722 52769332 52769361 4.800000e-04 56.5
13 TraesCS3A01G118300 chr6B 87.066 1469 152 17 1030 2471 6213365 6211908 0.000000e+00 1626.0
14 TraesCS3A01G118300 chr6B 80.055 361 65 6 1862 2220 276303167 276302812 9.490000e-66 261.0
15 TraesCS3A01G118300 chr6D 86.147 924 92 14 1589 2488 3038419 3037508 0.000000e+00 965.0
16 TraesCS3A01G118300 chr6D 85.528 615 58 11 986 1597 3040222 3039636 6.320000e-172 614.0
17 TraesCS3A01G118300 chr1A 79.592 343 66 4 2046 2386 130150325 130150665 3.440000e-60 243.0
18 TraesCS3A01G118300 chr5B 95.833 48 2 0 4 51 13421301 13421254 1.030000e-10 78.7
19 TraesCS3A01G118300 chr5B 100.000 30 0 0 2693 2722 341061968 341061997 4.800000e-04 56.5
20 TraesCS3A01G118300 chr5B 100.000 30 0 0 2695 2724 470517519 470517490 4.800000e-04 56.5
21 TraesCS3A01G118300 chr2A 93.750 48 3 0 1 48 660265140 660265187 4.770000e-09 73.1
22 TraesCS3A01G118300 chr2A 96.875 32 1 0 2693 2724 118669658 118669689 2.000000e-03 54.7
23 TraesCS3A01G118300 chr2B 93.182 44 3 0 5 48 773738387 773738430 7.980000e-07 65.8
24 TraesCS3A01G118300 chr2D 90.909 44 4 0 5 48 630639078 630639121 3.710000e-05 60.2
25 TraesCS3A01G118300 chr4A 97.059 34 0 1 2689 2721 695551497 695551464 4.800000e-04 56.5
26 TraesCS3A01G118300 chr4A 94.286 35 1 1 2689 2722 695494872 695494838 6.000000e-03 52.8
27 TraesCS3A01G118300 chr7D 100.000 28 0 0 2817 2844 459359099 459359126 6.000000e-03 52.8
28 TraesCS3A01G118300 chr7B 96.774 31 1 0 3007 3037 627054000 627053970 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G118300 chr3A 90292311 90295756 3445 False 6364.000000 6364 100.000000 1 3446 1 chr3A.!!$F1 3445
1 TraesCS3A01G118300 chr3A 90364106 90365525 1419 False 1927.000000 1927 91.304000 1011 2421 1 chr3A.!!$F2 1410
2 TraesCS3A01G118300 chr3D 75962120 75963538 1418 False 1964.000000 1964 91.795000 1012 2421 1 chr3D.!!$F1 1409
3 TraesCS3A01G118300 chr3D 75945998 75948574 2576 False 1254.666667 3295 93.152667 218 2722 3 chr3D.!!$F3 2504
4 TraesCS3A01G118300 chr3B 123033344 123034748 1404 False 2002.000000 2002 92.406000 1016 2421 1 chr3B.!!$F3 1405
5 TraesCS3A01G118300 chr3B 122825467 122828521 3054 False 1317.666667 2687 91.471667 157 2997 3 chr3B.!!$F4 2840
6 TraesCS3A01G118300 chr6B 6211908 6213365 1457 True 1626.000000 1626 87.066000 1030 2471 1 chr6B.!!$R1 1441
7 TraesCS3A01G118300 chr6D 3037508 3040222 2714 True 789.500000 965 85.837500 986 2488 2 chr6D.!!$R1 1502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.031857 TTGGCTGCAAACCAATCACG 59.968 50.0 15.18 0.0 42.23 4.35 F
1638 2923 0.178912 ACGACCACCCCTACTCCTTT 60.179 55.0 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 3128 1.261619 CTTGAACAGGTCGTTGCTGTC 59.738 52.381 0.0 0.0 38.19 3.51 R
2564 3945 1.141858 GGATCTTTCCCAGGTAGCAGG 59.858 57.143 0.0 0.0 35.84 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.007313 CCAACATTTGGCTAGCAAAATATTG 57.993 36.000 29.82 29.82 45.17 1.90
33 34 6.037391 CCAACATTTGGCTAGCAAAATATTGG 59.963 38.462 36.21 36.21 43.32 3.16
34 35 5.118286 ACATTTGGCTAGCAAAATATTGGC 58.882 37.500 26.12 1.77 37.02 4.52
35 36 5.104817 ACATTTGGCTAGCAAAATATTGGCT 60.105 36.000 26.12 16.39 37.02 4.75
36 37 4.389890 TTGGCTAGCAAAATATTGGCTG 57.610 40.909 18.24 12.84 37.02 4.85
37 38 2.101249 TGGCTAGCAAAATATTGGCTGC 59.899 45.455 18.24 18.80 37.02 5.25
38 39 2.101249 GGCTAGCAAAATATTGGCTGCA 59.899 45.455 18.24 5.35 37.26 4.41
39 40 3.430651 GGCTAGCAAAATATTGGCTGCAA 60.431 43.478 18.24 4.79 37.26 4.08
40 41 4.183101 GCTAGCAAAATATTGGCTGCAAA 58.817 39.130 19.73 0.00 37.26 3.68
41 42 4.033243 GCTAGCAAAATATTGGCTGCAAAC 59.967 41.667 19.73 6.53 37.26 2.93
42 43 3.337358 AGCAAAATATTGGCTGCAAACC 58.663 40.909 12.62 0.00 37.26 3.27
43 44 3.072944 GCAAAATATTGGCTGCAAACCA 58.927 40.909 4.00 4.00 37.02 3.67
48 49 3.984838 TTGGCTGCAAACCAATCAC 57.015 47.368 15.18 0.00 42.23 3.06
49 50 0.031857 TTGGCTGCAAACCAATCACG 59.968 50.000 15.18 0.00 42.23 4.35
50 51 1.734117 GGCTGCAAACCAATCACGC 60.734 57.895 0.50 0.00 0.00 5.34
51 52 1.007502 GCTGCAAACCAATCACGCA 60.008 52.632 0.00 0.00 0.00 5.24
52 53 0.597118 GCTGCAAACCAATCACGCAA 60.597 50.000 0.00 0.00 31.10 4.85
53 54 1.130955 CTGCAAACCAATCACGCAAC 58.869 50.000 0.00 0.00 31.10 4.17
54 55 0.743688 TGCAAACCAATCACGCAACT 59.256 45.000 0.00 0.00 0.00 3.16
55 56 1.268999 TGCAAACCAATCACGCAACTC 60.269 47.619 0.00 0.00 0.00 3.01
56 57 1.268999 GCAAACCAATCACGCAACTCA 60.269 47.619 0.00 0.00 0.00 3.41
57 58 2.607771 GCAAACCAATCACGCAACTCAT 60.608 45.455 0.00 0.00 0.00 2.90
58 59 2.981805 CAAACCAATCACGCAACTCATG 59.018 45.455 0.00 0.00 0.00 3.07
74 75 7.161829 CAACTCATGCATCAATGAAAATAGC 57.838 36.000 0.00 0.00 36.16 2.97
75 76 6.710597 ACTCATGCATCAATGAAAATAGCT 57.289 33.333 0.00 0.00 36.16 3.32
76 77 7.812690 ACTCATGCATCAATGAAAATAGCTA 57.187 32.000 0.00 0.00 36.16 3.32
77 78 7.872881 ACTCATGCATCAATGAAAATAGCTAG 58.127 34.615 0.00 0.00 36.16 3.42
78 79 7.718314 ACTCATGCATCAATGAAAATAGCTAGA 59.282 33.333 0.00 0.00 36.16 2.43
79 80 8.095937 TCATGCATCAATGAAAATAGCTAGAG 57.904 34.615 0.00 0.00 33.63 2.43
80 81 6.872628 TGCATCAATGAAAATAGCTAGAGG 57.127 37.500 0.00 0.00 0.00 3.69
81 82 5.240183 TGCATCAATGAAAATAGCTAGAGGC 59.760 40.000 0.00 2.41 42.19 4.70
82 83 5.335504 GCATCAATGAAAATAGCTAGAGGCC 60.336 44.000 0.00 0.00 43.05 5.19
83 84 5.636903 TCAATGAAAATAGCTAGAGGCCT 57.363 39.130 3.86 3.86 43.05 5.19
84 85 6.747414 TCAATGAAAATAGCTAGAGGCCTA 57.253 37.500 4.42 0.00 43.05 3.93
85 86 7.321717 TCAATGAAAATAGCTAGAGGCCTAT 57.678 36.000 4.42 4.57 43.05 2.57
86 87 8.435931 TCAATGAAAATAGCTAGAGGCCTATA 57.564 34.615 4.42 5.92 43.05 1.31
87 88 9.051259 TCAATGAAAATAGCTAGAGGCCTATAT 57.949 33.333 4.42 0.00 43.05 0.86
91 92 8.424918 TGAAAATAGCTAGAGGCCTATATATGC 58.575 37.037 4.42 7.19 43.05 3.14
92 93 7.921041 AAATAGCTAGAGGCCTATATATGCA 57.079 36.000 16.71 6.02 43.05 3.96
93 94 8.503428 AAATAGCTAGAGGCCTATATATGCAT 57.497 34.615 16.71 3.79 43.05 3.96
94 95 5.804944 AGCTAGAGGCCTATATATGCATG 57.195 43.478 16.71 2.26 43.05 4.06
95 96 5.215069 AGCTAGAGGCCTATATATGCATGT 58.785 41.667 16.71 5.06 43.05 3.21
96 97 5.070180 AGCTAGAGGCCTATATATGCATGTG 59.930 44.000 16.71 0.98 43.05 3.21
97 98 5.163364 GCTAGAGGCCTATATATGCATGTGT 60.163 44.000 4.42 3.28 34.27 3.72
98 99 5.350504 AGAGGCCTATATATGCATGTGTC 57.649 43.478 4.42 0.00 0.00 3.67
99 100 4.779489 AGAGGCCTATATATGCATGTGTCA 59.221 41.667 4.42 0.00 0.00 3.58
100 101 5.427806 AGAGGCCTATATATGCATGTGTCAT 59.572 40.000 4.42 0.00 0.00 3.06
101 102 5.434408 AGGCCTATATATGCATGTGTCATG 58.566 41.667 1.29 5.49 0.00 3.07
102 103 5.045359 AGGCCTATATATGCATGTGTCATGT 60.045 40.000 1.29 0.00 0.00 3.21
103 104 5.065602 GGCCTATATATGCATGTGTCATGTG 59.934 44.000 10.16 0.00 0.00 3.21
104 105 5.876460 GCCTATATATGCATGTGTCATGTGA 59.124 40.000 10.16 0.34 0.00 3.58
105 106 6.372381 GCCTATATATGCATGTGTCATGTGAA 59.628 38.462 10.16 0.00 0.00 3.18
106 107 7.094677 GCCTATATATGCATGTGTCATGTGAAA 60.095 37.037 10.16 0.00 0.00 2.69
107 108 8.785946 CCTATATATGCATGTGTCATGTGAAAA 58.214 33.333 10.16 0.00 0.00 2.29
112 113 6.330004 TGCATGTGTCATGTGAAAAATAGT 57.670 33.333 10.68 0.00 0.00 2.12
113 114 7.446001 TGCATGTGTCATGTGAAAAATAGTA 57.554 32.000 10.68 0.00 0.00 1.82
114 115 7.304735 TGCATGTGTCATGTGAAAAATAGTAC 58.695 34.615 10.68 0.00 0.00 2.73
115 116 7.174772 TGCATGTGTCATGTGAAAAATAGTACT 59.825 33.333 0.00 0.00 0.00 2.73
116 117 7.693951 GCATGTGTCATGTGAAAAATAGTACTC 59.306 37.037 0.00 0.00 0.00 2.59
117 118 7.667043 TGTGTCATGTGAAAAATAGTACTCC 57.333 36.000 0.00 0.00 0.00 3.85
118 119 6.653320 TGTGTCATGTGAAAAATAGTACTCCC 59.347 38.462 0.00 0.00 0.00 4.30
119 120 6.879458 GTGTCATGTGAAAAATAGTACTCCCT 59.121 38.462 0.00 0.00 0.00 4.20
120 121 7.064728 GTGTCATGTGAAAAATAGTACTCCCTC 59.935 40.741 0.00 0.00 0.00 4.30
121 122 7.103641 GTCATGTGAAAAATAGTACTCCCTCA 58.896 38.462 0.00 0.00 0.00 3.86
122 123 7.770897 GTCATGTGAAAAATAGTACTCCCTCAT 59.229 37.037 0.00 0.00 0.00 2.90
123 124 8.328758 TCATGTGAAAAATAGTACTCCCTCATT 58.671 33.333 0.00 0.00 0.00 2.57
124 125 9.613428 CATGTGAAAAATAGTACTCCCTCATTA 57.387 33.333 0.00 0.00 0.00 1.90
125 126 9.838339 ATGTGAAAAATAGTACTCCCTCATTAG 57.162 33.333 0.00 0.00 0.00 1.73
126 127 7.769044 TGTGAAAAATAGTACTCCCTCATTAGC 59.231 37.037 0.00 0.00 0.00 3.09
127 128 6.984474 TGAAAAATAGTACTCCCTCATTAGCG 59.016 38.462 0.00 0.00 0.00 4.26
128 129 6.481434 AAAATAGTACTCCCTCATTAGCGT 57.519 37.500 0.00 0.00 0.00 5.07
129 130 5.708877 AATAGTACTCCCTCATTAGCGTC 57.291 43.478 0.00 0.00 0.00 5.19
130 131 3.014304 AGTACTCCCTCATTAGCGTCA 57.986 47.619 0.00 0.00 0.00 4.35
131 132 3.362706 AGTACTCCCTCATTAGCGTCAA 58.637 45.455 0.00 0.00 0.00 3.18
132 133 3.767673 AGTACTCCCTCATTAGCGTCAAA 59.232 43.478 0.00 0.00 0.00 2.69
133 134 3.695830 ACTCCCTCATTAGCGTCAAAA 57.304 42.857 0.00 0.00 0.00 2.44
134 135 4.015872 ACTCCCTCATTAGCGTCAAAAA 57.984 40.909 0.00 0.00 0.00 1.94
135 136 3.751698 ACTCCCTCATTAGCGTCAAAAAC 59.248 43.478 0.00 0.00 0.00 2.43
154 155 9.878667 TCAAAAACGATCTTATATTACAGGACA 57.121 29.630 0.00 0.00 0.00 4.02
165 166 4.611564 ATTACAGGACAGAGGGAGTACT 57.388 45.455 0.00 0.00 0.00 2.73
169 170 4.949121 ACAGGACAGAGGGAGTACTTATT 58.051 43.478 0.00 0.00 0.00 1.40
188 189 8.987599 ACTTATTACATATTGAAAATCGTGCG 57.012 30.769 0.00 0.00 0.00 5.34
198 199 1.990799 AAATCGTGCGTGAAGATCGA 58.009 45.000 0.00 0.00 35.14 3.59
200 201 0.248661 ATCGTGCGTGAAGATCGAGG 60.249 55.000 0.00 0.00 34.20 4.63
203 206 0.526524 GTGCGTGAAGATCGAGGGAG 60.527 60.000 0.00 0.00 0.00 4.30
215 218 3.095912 TCGAGGGAGGAGTATCAAACA 57.904 47.619 0.00 0.00 36.25 2.83
224 227 9.004231 AGGGAGGAGTATCAAACATAAATTACT 57.996 33.333 0.00 0.00 36.25 2.24
303 307 5.885352 TCCACAACTCTGAAATGTTCTTCAA 59.115 36.000 0.00 0.00 34.96 2.69
324 328 4.476752 ACGTTGTGTGGGTGCCGT 62.477 61.111 0.00 0.00 0.00 5.68
325 329 2.280254 CGTTGTGTGGGTGCCGTA 60.280 61.111 0.00 0.00 0.00 4.02
327 331 1.231958 CGTTGTGTGGGTGCCGTATT 61.232 55.000 0.00 0.00 0.00 1.89
328 332 0.239879 GTTGTGTGGGTGCCGTATTG 59.760 55.000 0.00 0.00 0.00 1.90
330 334 0.179015 TGTGTGGGTGCCGTATTGTT 60.179 50.000 0.00 0.00 0.00 2.83
331 335 0.519961 GTGTGGGTGCCGTATTGTTC 59.480 55.000 0.00 0.00 0.00 3.18
332 336 0.398696 TGTGGGTGCCGTATTGTTCT 59.601 50.000 0.00 0.00 0.00 3.01
335 371 0.808755 GGGTGCCGTATTGTTCTTGG 59.191 55.000 0.00 0.00 0.00 3.61
341 377 2.094734 GCCGTATTGTTCTTGGGTTACG 59.905 50.000 0.00 0.00 33.97 3.18
346 382 6.455913 CCGTATTGTTCTTGGGTTACGTTATG 60.456 42.308 0.00 0.00 32.70 1.90
348 384 5.927954 TTGTTCTTGGGTTACGTTATGAC 57.072 39.130 0.00 0.00 0.00 3.06
411 448 7.899178 TTTTCGAGAATATAACAGCAACTGA 57.101 32.000 0.78 0.00 35.18 3.41
412 449 7.899178 TTTCGAGAATATAACAGCAACTGAA 57.101 32.000 0.78 0.00 35.18 3.02
413 450 7.525688 TTCGAGAATATAACAGCAACTGAAG 57.474 36.000 0.78 0.00 35.18 3.02
414 451 6.631016 TCGAGAATATAACAGCAACTGAAGT 58.369 36.000 0.78 0.00 35.18 3.01
415 452 7.097192 TCGAGAATATAACAGCAACTGAAGTT 58.903 34.615 0.78 0.00 39.12 2.66
416 453 7.275779 TCGAGAATATAACAGCAACTGAAGTTC 59.724 37.037 0.78 0.00 35.83 3.01
469 506 2.576615 AGGAAGACAGCTTGGTTGTTC 58.423 47.619 0.00 0.00 33.61 3.18
475 512 0.657368 CAGCTTGGTTGTTCGTTCGC 60.657 55.000 0.00 0.00 0.00 4.70
496 533 1.079875 GCACATGCAAGGAATTGCCG 61.080 55.000 10.22 4.57 46.82 5.69
522 559 2.355310 GGGACATTCCGACATGTTACCA 60.355 50.000 0.00 0.00 37.52 3.25
523 560 3.340034 GGACATTCCGACATGTTACCAA 58.660 45.455 0.00 0.00 37.52 3.67
529 569 5.776173 TTCCGACATGTTACCAATGTTTT 57.224 34.783 0.00 0.00 0.00 2.43
558 604 5.517770 GTGGATAGACATGCAAAATTTCAGC 59.482 40.000 8.24 8.24 33.89 4.26
612 658 2.028876 GTCTCTCCCTCTCTGGCTAAC 58.971 57.143 0.00 0.00 0.00 2.34
685 731 1.002624 TGGGCAATCCACGTCTTCC 60.003 57.895 0.00 0.00 41.46 3.46
825 872 1.140161 CCGTCATCTCCGCCGTAAA 59.860 57.895 0.00 0.00 0.00 2.01
826 873 0.458889 CCGTCATCTCCGCCGTAAAA 60.459 55.000 0.00 0.00 0.00 1.52
827 874 1.352114 CGTCATCTCCGCCGTAAAAA 58.648 50.000 0.00 0.00 0.00 1.94
957 1011 1.079503 GTACGCTCTTGGCTTCTTGG 58.920 55.000 0.00 0.00 39.13 3.61
958 1012 0.673644 TACGCTCTTGGCTTCTTGGC 60.674 55.000 0.00 0.00 39.13 4.52
959 1013 1.673665 CGCTCTTGGCTTCTTGGCT 60.674 57.895 0.00 0.00 42.34 4.75
960 1014 1.642952 CGCTCTTGGCTTCTTGGCTC 61.643 60.000 0.00 0.00 42.34 4.70
961 1015 0.322366 GCTCTTGGCTTCTTGGCTCT 60.322 55.000 0.00 0.00 42.34 4.09
962 1016 1.885790 GCTCTTGGCTTCTTGGCTCTT 60.886 52.381 0.00 0.00 42.34 2.85
963 1017 1.811359 CTCTTGGCTTCTTGGCTCTTG 59.189 52.381 0.00 0.00 42.34 3.02
964 1018 0.886563 CTTGGCTTCTTGGCTCTTGG 59.113 55.000 0.00 0.00 42.34 3.61
965 1019 1.181098 TTGGCTTCTTGGCTCTTGGC 61.181 55.000 0.00 0.00 42.34 4.52
966 1020 1.303970 GGCTTCTTGGCTCTTGGCT 60.304 57.895 0.00 0.00 41.46 4.75
967 1021 0.897401 GGCTTCTTGGCTCTTGGCTT 60.897 55.000 0.00 0.00 41.46 4.35
968 1022 0.525311 GCTTCTTGGCTCTTGGCTTC 59.475 55.000 0.00 0.00 41.46 3.86
969 1023 1.885790 GCTTCTTGGCTCTTGGCTTCT 60.886 52.381 0.00 0.00 41.46 2.85
970 1024 2.512705 CTTCTTGGCTCTTGGCTTCTT 58.487 47.619 0.00 0.00 41.46 2.52
971 1025 1.901591 TCTTGGCTCTTGGCTTCTTG 58.098 50.000 0.00 0.00 41.46 3.02
972 1026 0.243095 CTTGGCTCTTGGCTTCTTGC 59.757 55.000 0.00 0.00 41.46 4.01
973 1027 0.467844 TTGGCTCTTGGCTTCTTGCA 60.468 50.000 0.00 0.00 45.15 4.08
974 1028 1.174712 TGGCTCTTGGCTTCTTGCAC 61.175 55.000 0.00 0.00 45.15 4.57
975 1029 0.892814 GGCTCTTGGCTTCTTGCACT 60.893 55.000 0.00 0.00 45.15 4.40
976 1030 0.520847 GCTCTTGGCTTCTTGCACTC 59.479 55.000 0.00 0.00 45.15 3.51
977 1031 0.795085 CTCTTGGCTTCTTGCACTCG 59.205 55.000 0.00 0.00 45.15 4.18
978 1032 1.208614 CTTGGCTTCTTGCACTCGC 59.791 57.895 0.00 0.00 45.15 5.03
1500 1557 2.357517 CACTTCTTCCGCGGCACT 60.358 61.111 23.51 0.00 0.00 4.40
1638 2923 0.178912 ACGACCACCCCTACTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
1776 3061 0.179094 GCATCAACGTCGTCCCCATA 60.179 55.000 0.00 0.00 0.00 2.74
2010 3313 0.842030 TGTGGGTGCTGAGGAAGGAT 60.842 55.000 0.00 0.00 0.00 3.24
2584 3965 1.141858 CCTGCTACCTGGGAAAGATCC 59.858 57.143 0.00 0.00 45.77 3.36
2605 3986 2.930040 CAATGCCGTTCGTATCTTGTCT 59.070 45.455 0.00 0.00 0.00 3.41
2643 4024 8.645730 TCGCCGTTATGTATAATTCTGTTAAA 57.354 30.769 0.00 0.00 0.00 1.52
2684 4066 0.596082 GGTATTGCCGTGTTGCTTGT 59.404 50.000 0.00 0.00 0.00 3.16
2685 4067 1.665735 GGTATTGCCGTGTTGCTTGTG 60.666 52.381 0.00 0.00 0.00 3.33
2712 4094 2.757894 TCATCTACTCCCTCTGTCCC 57.242 55.000 0.00 0.00 0.00 4.46
2713 4095 1.930204 TCATCTACTCCCTCTGTCCCA 59.070 52.381 0.00 0.00 0.00 4.37
2714 4096 2.520120 TCATCTACTCCCTCTGTCCCAT 59.480 50.000 0.00 0.00 0.00 4.00
2715 4097 3.727391 TCATCTACTCCCTCTGTCCCATA 59.273 47.826 0.00 0.00 0.00 2.74
2716 4098 4.170053 TCATCTACTCCCTCTGTCCCATAA 59.830 45.833 0.00 0.00 0.00 1.90
2720 4102 7.599353 TCTACTCCCTCTGTCCCATAATATA 57.401 40.000 0.00 0.00 0.00 0.86
2764 4146 4.156182 GCGTCAACCTGCTAATGTTTTAC 58.844 43.478 0.00 0.00 0.00 2.01
2766 4148 4.668177 CGTCAACCTGCTAATGTTTTACGG 60.668 45.833 0.00 0.00 32.14 4.02
2818 4429 3.485431 CGAGAGCAAGCGCCTGTG 61.485 66.667 2.29 0.41 39.83 3.66
2855 4466 4.927267 TGGATTCAAGTGTAGGGACATT 57.073 40.909 0.00 0.00 38.04 2.71
2866 4477 0.984230 AGGGACATTCGTGACACCAT 59.016 50.000 0.00 0.00 0.00 3.55
2889 4500 1.689273 AGAGTAATGGACGATGCTCCC 59.311 52.381 0.00 0.00 0.00 4.30
2898 4509 4.277476 TGGACGATGCTCCCATAAAATTT 58.723 39.130 0.00 0.00 0.00 1.82
2899 4510 4.338118 TGGACGATGCTCCCATAAAATTTC 59.662 41.667 0.00 0.00 0.00 2.17
2909 4520 7.126115 TGCTCCCATAAAATTTCCTTCATGATT 59.874 33.333 0.00 0.00 0.00 2.57
2972 4583 4.431131 AGCAATCTGGTGGGCCGG 62.431 66.667 0.00 0.00 42.59 6.13
2991 4602 2.682563 CGGCCCATTTTTCAGTAGCCTA 60.683 50.000 0.00 0.00 36.76 3.93
2992 4603 2.952310 GGCCCATTTTTCAGTAGCCTAG 59.048 50.000 0.00 0.00 36.00 3.02
2994 4605 3.378427 GCCCATTTTTCAGTAGCCTAGTG 59.622 47.826 0.00 0.00 0.00 2.74
2995 4606 4.589908 CCCATTTTTCAGTAGCCTAGTGT 58.410 43.478 6.46 0.00 0.00 3.55
2996 4607 5.741011 CCCATTTTTCAGTAGCCTAGTGTA 58.259 41.667 6.46 0.00 0.00 2.90
2997 4608 5.585047 CCCATTTTTCAGTAGCCTAGTGTAC 59.415 44.000 6.46 0.00 0.00 2.90
2998 4609 5.291128 CCATTTTTCAGTAGCCTAGTGTACG 59.709 44.000 6.46 0.00 0.00 3.67
2999 4610 5.458041 TTTTTCAGTAGCCTAGTGTACGT 57.542 39.130 6.46 0.00 0.00 3.57
3000 4611 5.458041 TTTTCAGTAGCCTAGTGTACGTT 57.542 39.130 6.46 0.00 0.00 3.99
3001 4612 4.691860 TTCAGTAGCCTAGTGTACGTTC 57.308 45.455 6.46 0.00 0.00 3.95
3002 4613 3.947868 TCAGTAGCCTAGTGTACGTTCT 58.052 45.455 6.46 0.00 0.00 3.01
3003 4614 5.089970 TCAGTAGCCTAGTGTACGTTCTA 57.910 43.478 6.46 0.00 0.00 2.10
3004 4615 4.872691 TCAGTAGCCTAGTGTACGTTCTAC 59.127 45.833 6.46 0.00 0.00 2.59
3005 4616 4.874966 CAGTAGCCTAGTGTACGTTCTACT 59.125 45.833 0.00 0.00 36.63 2.57
3006 4617 4.874966 AGTAGCCTAGTGTACGTTCTACTG 59.125 45.833 0.00 0.00 35.38 2.74
3007 4618 3.015327 AGCCTAGTGTACGTTCTACTGG 58.985 50.000 0.00 0.00 0.00 4.00
3008 4619 2.751806 GCCTAGTGTACGTTCTACTGGT 59.248 50.000 0.00 0.00 0.00 4.00
3009 4620 3.192212 GCCTAGTGTACGTTCTACTGGTT 59.808 47.826 0.00 0.00 0.00 3.67
3010 4621 4.321527 GCCTAGTGTACGTTCTACTGGTTT 60.322 45.833 0.00 0.00 0.00 3.27
3011 4622 5.776744 CCTAGTGTACGTTCTACTGGTTTT 58.223 41.667 0.00 0.00 0.00 2.43
3012 4623 5.632347 CCTAGTGTACGTTCTACTGGTTTTG 59.368 44.000 0.00 0.00 0.00 2.44
3013 4624 4.374399 AGTGTACGTTCTACTGGTTTTGG 58.626 43.478 0.00 0.00 0.00 3.28
3014 4625 4.122046 GTGTACGTTCTACTGGTTTTGGT 58.878 43.478 0.00 0.00 0.00 3.67
3015 4626 5.068987 AGTGTACGTTCTACTGGTTTTGGTA 59.931 40.000 0.00 0.00 0.00 3.25
3016 4627 5.752955 GTGTACGTTCTACTGGTTTTGGTAA 59.247 40.000 0.00 0.00 0.00 2.85
3017 4628 5.752955 TGTACGTTCTACTGGTTTTGGTAAC 59.247 40.000 0.00 0.00 0.00 2.50
3018 4629 4.129380 ACGTTCTACTGGTTTTGGTAACC 58.871 43.478 0.00 0.00 40.67 2.85
3019 4630 4.141642 ACGTTCTACTGGTTTTGGTAACCT 60.142 41.667 8.05 0.00 40.88 3.50
3020 4631 4.818005 CGTTCTACTGGTTTTGGTAACCTT 59.182 41.667 8.05 0.00 40.88 3.50
3021 4632 5.049886 CGTTCTACTGGTTTTGGTAACCTTC 60.050 44.000 8.05 0.00 40.88 3.46
3022 4633 5.899631 TCTACTGGTTTTGGTAACCTTCT 57.100 39.130 8.05 0.00 40.88 2.85
3023 4634 6.999705 TCTACTGGTTTTGGTAACCTTCTA 57.000 37.500 8.05 0.00 40.88 2.10
3024 4635 7.001099 TCTACTGGTTTTGGTAACCTTCTAG 57.999 40.000 8.05 0.40 40.88 2.43
3025 4636 5.899631 ACTGGTTTTGGTAACCTTCTAGA 57.100 39.130 8.05 0.00 40.88 2.43
3026 4637 6.256643 ACTGGTTTTGGTAACCTTCTAGAA 57.743 37.500 4.81 4.81 40.88 2.10
3027 4638 6.296803 ACTGGTTTTGGTAACCTTCTAGAAG 58.703 40.000 23.31 23.31 40.88 2.85
3040 4651 4.602995 CTTCTAGAAGGTTCTCGAATCGG 58.397 47.826 22.67 0.00 38.03 4.18
3041 4652 2.358267 TCTAGAAGGTTCTCGAATCGGC 59.642 50.000 1.76 0.00 38.70 5.54
3042 4653 1.187087 AGAAGGTTCTCGAATCGGCT 58.813 50.000 1.76 0.00 29.94 5.52
3043 4654 1.550976 AGAAGGTTCTCGAATCGGCTT 59.449 47.619 1.76 0.00 29.94 4.35
3044 4655 2.028020 AGAAGGTTCTCGAATCGGCTTT 60.028 45.455 1.76 0.00 29.94 3.51
3045 4656 2.474410 AGGTTCTCGAATCGGCTTTT 57.526 45.000 1.76 0.00 0.00 2.27
3046 4657 2.347731 AGGTTCTCGAATCGGCTTTTC 58.652 47.619 1.76 0.00 0.00 2.29
3047 4658 2.073816 GGTTCTCGAATCGGCTTTTCA 58.926 47.619 1.76 0.00 0.00 2.69
3048 4659 2.678336 GGTTCTCGAATCGGCTTTTCAT 59.322 45.455 1.76 0.00 0.00 2.57
3049 4660 3.485877 GGTTCTCGAATCGGCTTTTCATG 60.486 47.826 1.76 0.00 0.00 3.07
3050 4661 2.972625 TCTCGAATCGGCTTTTCATGT 58.027 42.857 1.76 0.00 0.00 3.21
3051 4662 3.334691 TCTCGAATCGGCTTTTCATGTT 58.665 40.909 1.76 0.00 0.00 2.71
3052 4663 3.125146 TCTCGAATCGGCTTTTCATGTTG 59.875 43.478 1.76 0.00 0.00 3.33
3053 4664 2.811431 TCGAATCGGCTTTTCATGTTGT 59.189 40.909 1.76 0.00 0.00 3.32
3054 4665 3.252215 TCGAATCGGCTTTTCATGTTGTT 59.748 39.130 1.76 0.00 0.00 2.83
3055 4666 3.361644 CGAATCGGCTTTTCATGTTGTTG 59.638 43.478 0.00 0.00 0.00 3.33
3056 4667 4.298332 GAATCGGCTTTTCATGTTGTTGT 58.702 39.130 0.00 0.00 0.00 3.32
3057 4668 3.791973 TCGGCTTTTCATGTTGTTGTT 57.208 38.095 0.00 0.00 0.00 2.83
3058 4669 4.116747 TCGGCTTTTCATGTTGTTGTTT 57.883 36.364 0.00 0.00 0.00 2.83
3059 4670 4.499183 TCGGCTTTTCATGTTGTTGTTTT 58.501 34.783 0.00 0.00 0.00 2.43
3060 4671 4.932200 TCGGCTTTTCATGTTGTTGTTTTT 59.068 33.333 0.00 0.00 0.00 1.94
3144 4755 8.791327 AAAATGTTCAGAATTTCCAAACTTGT 57.209 26.923 10.89 1.13 0.00 3.16
3145 4756 8.791327 AAATGTTCAGAATTTCCAAACTTGTT 57.209 26.923 10.89 0.00 0.00 2.83
3146 4757 8.424274 AATGTTCAGAATTTCCAAACTTGTTC 57.576 30.769 10.89 0.00 0.00 3.18
3147 4758 6.929625 TGTTCAGAATTTCCAAACTTGTTCA 58.070 32.000 10.89 0.00 0.00 3.18
3148 4759 7.382110 TGTTCAGAATTTCCAAACTTGTTCAA 58.618 30.769 10.89 0.00 0.00 2.69
3149 4760 7.875041 TGTTCAGAATTTCCAAACTTGTTCAAA 59.125 29.630 10.89 0.00 0.00 2.69
3150 4761 8.716909 GTTCAGAATTTCCAAACTTGTTCAAAA 58.283 29.630 0.00 0.00 0.00 2.44
3151 4762 9.447157 TTCAGAATTTCCAAACTTGTTCAAAAT 57.553 25.926 0.00 0.00 0.00 1.82
3152 4763 9.447157 TCAGAATTTCCAAACTTGTTCAAAATT 57.553 25.926 10.41 10.41 0.00 1.82
3188 4799 9.883142 TTCATAATTTGAAGTTTTGTTCAGGTT 57.117 25.926 0.00 0.00 39.44 3.50
3189 4800 9.883142 TCATAATTTGAAGTTTTGTTCAGGTTT 57.117 25.926 0.00 0.00 37.72 3.27
3192 4803 8.614469 AATTTGAAGTTTTGTTCAGGTTTTCA 57.386 26.923 0.00 0.00 37.72 2.69
3193 4804 8.614469 ATTTGAAGTTTTGTTCAGGTTTTCAA 57.386 26.923 0.00 0.00 37.72 2.69
3194 4805 8.438676 TTTGAAGTTTTGTTCAGGTTTTCAAA 57.561 26.923 5.30 5.30 39.53 2.69
3195 4806 8.438676 TTGAAGTTTTGTTCAGGTTTTCAAAA 57.561 26.923 0.00 0.00 37.72 2.44
3196 4807 8.438676 TGAAGTTTTGTTCAGGTTTTCAAAAA 57.561 26.923 0.00 0.00 40.02 1.94
3233 4844 9.872721 AAAAATGCTTGGAATTTCAATTTTGTT 57.127 22.222 9.13 0.16 0.00 2.83
3234 4845 9.518906 AAAATGCTTGGAATTTCAATTTTGTTC 57.481 25.926 0.00 0.00 0.00 3.18
3235 4846 7.804843 ATGCTTGGAATTTCAATTTTGTTCA 57.195 28.000 0.00 0.00 0.00 3.18
3236 4847 7.804843 TGCTTGGAATTTCAATTTTGTTCAT 57.195 28.000 0.00 0.00 0.00 2.57
3237 4848 8.899427 TGCTTGGAATTTCAATTTTGTTCATA 57.101 26.923 0.00 0.00 0.00 2.15
3238 4849 9.334947 TGCTTGGAATTTCAATTTTGTTCATAA 57.665 25.926 0.00 0.00 0.00 1.90
3330 4941 8.864069 ATGATCACGTTTTAAACAAATGTTCA 57.136 26.923 8.61 12.18 37.25 3.18
3331 4942 8.864069 TGATCACGTTTTAAACAAATGTTCAT 57.136 26.923 8.61 0.00 37.25 2.57
3332 4943 8.750416 TGATCACGTTTTAAACAAATGTTCATG 58.250 29.630 8.61 0.00 37.25 3.07
3333 4944 8.641499 ATCACGTTTTAAACAAATGTTCATGT 57.359 26.923 8.61 0.00 37.25 3.21
3334 4945 8.467402 TCACGTTTTAAACAAATGTTCATGTT 57.533 26.923 8.61 0.00 41.31 2.71
3336 4947 9.535270 CACGTTTTAAACAAATGTTCATGTTTT 57.465 25.926 8.61 2.53 44.91 2.43
3386 4997 6.843069 AATGGAATTTTCAAAAGGTGTTCG 57.157 33.333 0.00 0.00 26.74 3.95
3387 4998 4.116238 TGGAATTTTCAAAAGGTGTTCGC 58.884 39.130 0.00 0.00 0.00 4.70
3388 4999 4.116238 GGAATTTTCAAAAGGTGTTCGCA 58.884 39.130 0.00 0.00 0.00 5.10
3389 5000 4.026062 GGAATTTTCAAAAGGTGTTCGCAC 60.026 41.667 0.00 0.00 46.91 5.34
3390 5001 3.859411 TTTTCAAAAGGTGTTCGCACT 57.141 38.095 0.00 0.00 46.81 4.40
3391 5002 3.859411 TTTCAAAAGGTGTTCGCACTT 57.141 38.095 0.00 0.00 46.81 3.16
3393 5004 4.966965 TTCAAAAGGTGTTCGCACTTTA 57.033 36.364 0.00 0.00 44.98 1.85
3394 5005 4.966965 TCAAAAGGTGTTCGCACTTTAA 57.033 36.364 0.00 0.00 44.98 1.52
3395 5006 5.312120 TCAAAAGGTGTTCGCACTTTAAA 57.688 34.783 0.00 0.00 44.98 1.52
3396 5007 5.710984 TCAAAAGGTGTTCGCACTTTAAAA 58.289 33.333 0.00 0.00 44.98 1.52
3397 5008 5.573669 TCAAAAGGTGTTCGCACTTTAAAAC 59.426 36.000 0.00 0.00 44.98 2.43
3398 5009 4.976224 AAGGTGTTCGCACTTTAAAACT 57.024 36.364 0.00 0.00 44.11 2.66
3399 5010 4.287238 AGGTGTTCGCACTTTAAAACTG 57.713 40.909 0.00 0.00 46.81 3.16
3400 5011 2.787129 GGTGTTCGCACTTTAAAACTGC 59.213 45.455 7.26 7.26 46.81 4.40
3401 5012 3.488553 GGTGTTCGCACTTTAAAACTGCT 60.489 43.478 13.12 0.00 46.81 4.24
3402 5013 4.102649 GTGTTCGCACTTTAAAACTGCTT 58.897 39.130 13.12 0.00 44.38 3.91
3403 5014 4.027702 GTGTTCGCACTTTAAAACTGCTTG 60.028 41.667 13.12 2.65 44.38 4.01
3404 5015 4.142578 TGTTCGCACTTTAAAACTGCTTGA 60.143 37.500 13.12 4.43 0.00 3.02
3405 5016 4.209452 TCGCACTTTAAAACTGCTTGAG 57.791 40.909 13.12 1.85 0.00 3.02
3406 5017 3.003275 TCGCACTTTAAAACTGCTTGAGG 59.997 43.478 13.12 1.58 0.00 3.86
3407 5018 3.003275 CGCACTTTAAAACTGCTTGAGGA 59.997 43.478 13.12 0.00 0.00 3.71
3408 5019 4.320494 CGCACTTTAAAACTGCTTGAGGAT 60.320 41.667 13.12 0.00 0.00 3.24
3409 5020 5.532557 GCACTTTAAAACTGCTTGAGGATT 58.467 37.500 9.35 0.00 0.00 3.01
3410 5021 5.985530 GCACTTTAAAACTGCTTGAGGATTT 59.014 36.000 9.35 0.00 0.00 2.17
3411 5022 6.144563 GCACTTTAAAACTGCTTGAGGATTTC 59.855 38.462 9.35 0.00 0.00 2.17
3412 5023 7.202526 CACTTTAAAACTGCTTGAGGATTTCA 58.797 34.615 0.00 0.00 0.00 2.69
3413 5024 7.706179 CACTTTAAAACTGCTTGAGGATTTCAA 59.294 33.333 0.00 0.00 43.40 2.69
3414 5025 8.257306 ACTTTAAAACTGCTTGAGGATTTCAAA 58.743 29.630 0.00 0.00 44.84 2.69
3415 5026 9.097257 CTTTAAAACTGCTTGAGGATTTCAAAA 57.903 29.630 0.00 0.00 44.84 2.44
3416 5027 9.442047 TTTAAAACTGCTTGAGGATTTCAAAAA 57.558 25.926 0.00 0.00 44.84 1.94
3417 5028 6.908870 AAACTGCTTGAGGATTTCAAAAAC 57.091 33.333 0.00 0.00 44.84 2.43
3418 5029 5.859205 ACTGCTTGAGGATTTCAAAAACT 57.141 34.783 0.00 0.00 44.84 2.66
3419 5030 5.594926 ACTGCTTGAGGATTTCAAAAACTG 58.405 37.500 0.00 0.00 44.84 3.16
3420 5031 5.127682 ACTGCTTGAGGATTTCAAAAACTGT 59.872 36.000 0.00 0.00 44.84 3.55
3421 5032 5.976458 TGCTTGAGGATTTCAAAAACTGTT 58.024 33.333 0.00 0.00 44.84 3.16
3422 5033 6.042143 TGCTTGAGGATTTCAAAAACTGTTC 58.958 36.000 0.00 0.00 44.84 3.18
3423 5034 5.173854 GCTTGAGGATTTCAAAAACTGTTCG 59.826 40.000 0.00 0.00 44.84 3.95
3424 5035 5.828299 TGAGGATTTCAAAAACTGTTCGT 57.172 34.783 0.00 0.00 31.34 3.85
3425 5036 5.577835 TGAGGATTTCAAAAACTGTTCGTG 58.422 37.500 0.00 0.00 31.34 4.35
3426 5037 4.359706 AGGATTTCAAAAACTGTTCGTGC 58.640 39.130 0.00 0.00 0.00 5.34
3427 5038 4.097892 AGGATTTCAAAAACTGTTCGTGCT 59.902 37.500 0.00 0.00 0.00 4.40
3428 5039 4.803613 GGATTTCAAAAACTGTTCGTGCTT 59.196 37.500 0.00 0.00 0.00 3.91
3429 5040 5.290885 GGATTTCAAAAACTGTTCGTGCTTT 59.709 36.000 0.00 0.00 0.00 3.51
3430 5041 6.474102 GGATTTCAAAAACTGTTCGTGCTTTA 59.526 34.615 0.00 0.00 0.00 1.85
3431 5042 7.009723 GGATTTCAAAAACTGTTCGTGCTTTAA 59.990 33.333 0.00 0.00 0.00 1.52
3432 5043 7.639162 TTTCAAAAACTGTTCGTGCTTTAAA 57.361 28.000 0.00 0.00 0.00 1.52
3433 5044 7.639162 TTCAAAAACTGTTCGTGCTTTAAAA 57.361 28.000 0.00 0.00 0.00 1.52
3434 5045 7.271936 TCAAAAACTGTTCGTGCTTTAAAAG 57.728 32.000 0.00 0.00 0.00 2.27
3435 5046 7.085116 TCAAAAACTGTTCGTGCTTTAAAAGA 58.915 30.769 0.00 0.00 0.00 2.52
3436 5047 7.595502 TCAAAAACTGTTCGTGCTTTAAAAGAA 59.404 29.630 0.00 0.00 0.00 2.52
3437 5048 8.379902 CAAAAACTGTTCGTGCTTTAAAAGAAT 58.620 29.630 0.00 0.00 0.00 2.40
3438 5049 7.449934 AAACTGTTCGTGCTTTAAAAGAATG 57.550 32.000 0.00 0.00 0.00 2.67
3439 5050 6.131544 ACTGTTCGTGCTTTAAAAGAATGT 57.868 33.333 0.00 0.00 0.00 2.71
3440 5051 6.560711 ACTGTTCGTGCTTTAAAAGAATGTT 58.439 32.000 0.00 0.00 0.00 2.71
3441 5052 6.691388 ACTGTTCGTGCTTTAAAAGAATGTTC 59.309 34.615 0.00 0.00 0.00 3.18
3442 5053 6.556212 TGTTCGTGCTTTAAAAGAATGTTCA 58.444 32.000 0.00 0.00 0.00 3.18
3443 5054 6.690957 TGTTCGTGCTTTAAAAGAATGTTCAG 59.309 34.615 0.00 0.00 0.00 3.02
3444 5055 6.612247 TCGTGCTTTAAAAGAATGTTCAGA 57.388 33.333 0.00 0.00 0.00 3.27
3445 5056 7.022055 TCGTGCTTTAAAAGAATGTTCAGAA 57.978 32.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.457257 GCCAATATTTTGCTAGCCAAATGTTG 60.457 38.462 33.59 33.59 42.63 3.33
10 11 5.585844 GCCAATATTTTGCTAGCCAAATGTT 59.414 36.000 28.16 25.26 42.63 2.71
11 12 5.104817 AGCCAATATTTTGCTAGCCAAATGT 60.105 36.000 28.16 21.90 42.63 2.71
12 13 5.235616 CAGCCAATATTTTGCTAGCCAAATG 59.764 40.000 28.16 17.46 42.63 2.32
13 14 5.362263 CAGCCAATATTTTGCTAGCCAAAT 58.638 37.500 25.00 25.00 42.63 2.32
14 15 4.757594 CAGCCAATATTTTGCTAGCCAAA 58.242 39.130 15.56 15.56 41.48 3.28
15 16 3.430651 GCAGCCAATATTTTGCTAGCCAA 60.431 43.478 13.29 4.35 33.88 4.52
16 17 2.101249 GCAGCCAATATTTTGCTAGCCA 59.899 45.455 13.29 0.00 33.88 4.75
17 18 2.101249 TGCAGCCAATATTTTGCTAGCC 59.899 45.455 13.29 0.00 37.45 3.93
18 19 3.441496 TGCAGCCAATATTTTGCTAGC 57.559 42.857 8.10 8.10 37.45 3.42
19 20 4.567959 GGTTTGCAGCCAATATTTTGCTAG 59.432 41.667 14.13 8.68 37.45 3.42
20 21 4.020751 TGGTTTGCAGCCAATATTTTGCTA 60.021 37.500 9.30 6.99 37.45 3.49
21 22 3.244491 TGGTTTGCAGCCAATATTTTGCT 60.244 39.130 9.30 9.66 37.45 3.91
22 23 3.072944 TGGTTTGCAGCCAATATTTTGC 58.927 40.909 9.30 8.64 37.09 3.68
31 32 1.659233 CGTGATTGGTTTGCAGCCA 59.341 52.632 7.85 7.85 0.00 4.75
32 33 1.734117 GCGTGATTGGTTTGCAGCC 60.734 57.895 2.76 2.76 0.00 4.85
33 34 0.597118 TTGCGTGATTGGTTTGCAGC 60.597 50.000 0.00 0.00 36.83 5.25
34 35 1.130955 GTTGCGTGATTGGTTTGCAG 58.869 50.000 0.00 0.00 36.83 4.41
35 36 0.743688 AGTTGCGTGATTGGTTTGCA 59.256 45.000 0.00 0.00 0.00 4.08
36 37 1.268999 TGAGTTGCGTGATTGGTTTGC 60.269 47.619 0.00 0.00 0.00 3.68
37 38 2.772568 TGAGTTGCGTGATTGGTTTG 57.227 45.000 0.00 0.00 0.00 2.93
38 39 2.607771 GCATGAGTTGCGTGATTGGTTT 60.608 45.455 0.00 0.00 42.54 3.27
39 40 1.068333 GCATGAGTTGCGTGATTGGTT 60.068 47.619 0.00 0.00 42.54 3.67
40 41 0.523072 GCATGAGTTGCGTGATTGGT 59.477 50.000 0.00 0.00 42.54 3.67
41 42 3.317608 GCATGAGTTGCGTGATTGG 57.682 52.632 0.00 0.00 42.54 3.16
50 51 6.978659 AGCTATTTTCATTGATGCATGAGTTG 59.021 34.615 2.46 0.00 0.00 3.16
51 52 7.108841 AGCTATTTTCATTGATGCATGAGTT 57.891 32.000 2.46 0.00 0.00 3.01
52 53 6.710597 AGCTATTTTCATTGATGCATGAGT 57.289 33.333 2.46 0.00 0.00 3.41
53 54 8.095937 TCTAGCTATTTTCATTGATGCATGAG 57.904 34.615 2.46 0.00 0.00 2.90
54 55 7.174426 CCTCTAGCTATTTTCATTGATGCATGA 59.826 37.037 2.46 0.00 0.00 3.07
55 56 7.306213 CCTCTAGCTATTTTCATTGATGCATG 58.694 38.462 2.46 0.00 0.00 4.06
56 57 6.072064 GCCTCTAGCTATTTTCATTGATGCAT 60.072 38.462 0.00 0.00 38.99 3.96
57 58 5.240183 GCCTCTAGCTATTTTCATTGATGCA 59.760 40.000 0.00 0.00 38.99 3.96
58 59 5.335504 GGCCTCTAGCTATTTTCATTGATGC 60.336 44.000 0.00 0.00 43.05 3.91
59 60 6.002704 AGGCCTCTAGCTATTTTCATTGATG 58.997 40.000 0.00 0.00 43.05 3.07
60 61 6.198237 AGGCCTCTAGCTATTTTCATTGAT 57.802 37.500 0.00 0.00 43.05 2.57
61 62 5.636903 AGGCCTCTAGCTATTTTCATTGA 57.363 39.130 0.00 0.00 43.05 2.57
65 66 8.424918 GCATATATAGGCCTCTAGCTATTTTCA 58.575 37.037 9.68 0.00 43.05 2.69
66 67 8.424918 TGCATATATAGGCCTCTAGCTATTTTC 58.575 37.037 9.68 0.00 43.05 2.29
67 68 8.324191 TGCATATATAGGCCTCTAGCTATTTT 57.676 34.615 9.68 0.00 43.05 1.82
68 69 7.921041 TGCATATATAGGCCTCTAGCTATTT 57.079 36.000 9.68 0.00 43.05 1.40
69 70 7.512058 ACATGCATATATAGGCCTCTAGCTATT 59.488 37.037 9.68 0.00 43.05 1.73
70 71 7.015680 ACATGCATATATAGGCCTCTAGCTAT 58.984 38.462 9.68 0.00 43.05 2.97
71 72 6.266330 CACATGCATATATAGGCCTCTAGCTA 59.734 42.308 9.68 0.00 43.05 3.32
72 73 5.070180 CACATGCATATATAGGCCTCTAGCT 59.930 44.000 9.68 0.00 43.05 3.32
73 74 5.163364 ACACATGCATATATAGGCCTCTAGC 60.163 44.000 9.68 7.08 42.60 3.42
74 75 6.097412 TGACACATGCATATATAGGCCTCTAG 59.903 42.308 9.68 5.82 30.87 2.43
75 76 5.957774 TGACACATGCATATATAGGCCTCTA 59.042 40.000 9.68 3.72 30.87 2.43
76 77 4.779489 TGACACATGCATATATAGGCCTCT 59.221 41.667 9.68 0.46 30.87 3.69
77 78 5.089970 TGACACATGCATATATAGGCCTC 57.910 43.478 9.68 0.00 30.87 4.70
78 79 5.045359 ACATGACACATGCATATATAGGCCT 60.045 40.000 16.23 11.78 30.87 5.19
79 80 5.065602 CACATGACACATGCATATATAGGCC 59.934 44.000 16.23 0.00 30.87 5.19
80 81 5.876460 TCACATGACACATGCATATATAGGC 59.124 40.000 12.38 12.38 0.00 3.93
81 82 7.910441 TTCACATGACACATGCATATATAGG 57.090 36.000 0.00 0.00 0.00 2.57
86 87 8.689061 ACTATTTTTCACATGACACATGCATAT 58.311 29.630 0.00 0.00 0.00 1.78
87 88 8.054152 ACTATTTTTCACATGACACATGCATA 57.946 30.769 0.00 0.00 0.00 3.14
88 89 6.927416 ACTATTTTTCACATGACACATGCAT 58.073 32.000 0.00 0.00 0.00 3.96
89 90 6.330004 ACTATTTTTCACATGACACATGCA 57.670 33.333 0.00 0.00 0.00 3.96
90 91 7.530010 AGTACTATTTTTCACATGACACATGC 58.470 34.615 0.00 0.00 0.00 4.06
91 92 8.177663 GGAGTACTATTTTTCACATGACACATG 58.822 37.037 0.00 9.72 0.00 3.21
92 93 7.336931 GGGAGTACTATTTTTCACATGACACAT 59.663 37.037 0.00 0.00 0.00 3.21
93 94 6.653320 GGGAGTACTATTTTTCACATGACACA 59.347 38.462 0.00 0.00 0.00 3.72
94 95 6.879458 AGGGAGTACTATTTTTCACATGACAC 59.121 38.462 0.00 0.00 0.00 3.67
95 96 7.016153 AGGGAGTACTATTTTTCACATGACA 57.984 36.000 0.00 0.00 0.00 3.58
96 97 7.103641 TGAGGGAGTACTATTTTTCACATGAC 58.896 38.462 0.00 0.00 0.00 3.06
97 98 7.252612 TGAGGGAGTACTATTTTTCACATGA 57.747 36.000 0.00 0.00 0.00 3.07
98 99 8.511604 AATGAGGGAGTACTATTTTTCACATG 57.488 34.615 0.00 0.00 0.00 3.21
99 100 9.838339 CTAATGAGGGAGTACTATTTTTCACAT 57.162 33.333 0.00 0.00 0.00 3.21
100 101 7.769044 GCTAATGAGGGAGTACTATTTTTCACA 59.231 37.037 0.00 0.00 0.00 3.58
101 102 7.042658 CGCTAATGAGGGAGTACTATTTTTCAC 60.043 40.741 0.00 0.00 37.85 3.18
102 103 6.984474 CGCTAATGAGGGAGTACTATTTTTCA 59.016 38.462 0.00 0.00 37.85 2.69
103 104 6.985059 ACGCTAATGAGGGAGTACTATTTTTC 59.015 38.462 0.05 0.00 38.95 2.29
104 105 6.885922 ACGCTAATGAGGGAGTACTATTTTT 58.114 36.000 0.05 0.00 38.95 1.94
105 106 6.097839 TGACGCTAATGAGGGAGTACTATTTT 59.902 38.462 0.05 0.00 38.95 1.82
106 107 5.597182 TGACGCTAATGAGGGAGTACTATTT 59.403 40.000 0.05 0.00 38.95 1.40
107 108 5.138276 TGACGCTAATGAGGGAGTACTATT 58.862 41.667 0.05 0.00 38.95 1.73
108 109 4.726583 TGACGCTAATGAGGGAGTACTAT 58.273 43.478 0.05 0.00 38.95 2.12
109 110 4.160642 TGACGCTAATGAGGGAGTACTA 57.839 45.455 0.05 0.00 38.95 1.82
110 111 3.014304 TGACGCTAATGAGGGAGTACT 57.986 47.619 0.05 0.00 38.95 2.73
111 112 3.795623 TTGACGCTAATGAGGGAGTAC 57.204 47.619 0.05 0.00 38.95 2.73
112 113 4.811969 TTTTGACGCTAATGAGGGAGTA 57.188 40.909 0.05 0.00 38.95 2.59
113 114 3.695830 TTTTGACGCTAATGAGGGAGT 57.304 42.857 0.05 0.00 38.95 3.85
114 115 3.181520 CGTTTTTGACGCTAATGAGGGAG 60.182 47.826 0.05 0.00 45.86 4.30
115 116 2.739913 CGTTTTTGACGCTAATGAGGGA 59.260 45.455 0.05 0.00 45.86 4.20
116 117 3.117434 CGTTTTTGACGCTAATGAGGG 57.883 47.619 0.00 0.00 45.86 4.30
128 129 9.878667 TGTCCTGTAATATAAGATCGTTTTTGA 57.121 29.630 0.00 0.00 0.00 2.69
131 132 9.751542 CTCTGTCCTGTAATATAAGATCGTTTT 57.248 33.333 0.00 0.00 0.00 2.43
132 133 8.361139 CCTCTGTCCTGTAATATAAGATCGTTT 58.639 37.037 0.00 0.00 0.00 3.60
133 134 7.039644 CCCTCTGTCCTGTAATATAAGATCGTT 60.040 40.741 0.00 0.00 0.00 3.85
134 135 6.434652 CCCTCTGTCCTGTAATATAAGATCGT 59.565 42.308 0.00 0.00 0.00 3.73
135 136 6.659668 TCCCTCTGTCCTGTAATATAAGATCG 59.340 42.308 0.00 0.00 0.00 3.69
136 137 7.672239 ACTCCCTCTGTCCTGTAATATAAGATC 59.328 40.741 0.00 0.00 0.00 2.75
137 138 7.540183 ACTCCCTCTGTCCTGTAATATAAGAT 58.460 38.462 0.00 0.00 0.00 2.40
138 139 6.923670 ACTCCCTCTGTCCTGTAATATAAGA 58.076 40.000 0.00 0.00 0.00 2.10
139 140 7.945664 AGTACTCCCTCTGTCCTGTAATATAAG 59.054 40.741 0.00 0.00 0.00 1.73
140 141 7.823635 AGTACTCCCTCTGTCCTGTAATATAA 58.176 38.462 0.00 0.00 0.00 0.98
141 142 7.403837 AGTACTCCCTCTGTCCTGTAATATA 57.596 40.000 0.00 0.00 0.00 0.86
142 143 6.282568 AGTACTCCCTCTGTCCTGTAATAT 57.717 41.667 0.00 0.00 0.00 1.28
143 144 5.728937 AGTACTCCCTCTGTCCTGTAATA 57.271 43.478 0.00 0.00 0.00 0.98
144 145 4.611564 AGTACTCCCTCTGTCCTGTAAT 57.388 45.455 0.00 0.00 0.00 1.89
145 146 4.399483 AAGTACTCCCTCTGTCCTGTAA 57.601 45.455 0.00 0.00 0.00 2.41
146 147 5.728937 ATAAGTACTCCCTCTGTCCTGTA 57.271 43.478 0.00 0.00 0.00 2.74
147 148 4.611564 ATAAGTACTCCCTCTGTCCTGT 57.388 45.455 0.00 0.00 0.00 4.00
148 149 5.892119 TGTAATAAGTACTCCCTCTGTCCTG 59.108 44.000 0.00 0.00 33.46 3.86
149 150 6.088541 TGTAATAAGTACTCCCTCTGTCCT 57.911 41.667 0.00 0.00 33.46 3.85
150 151 6.980416 ATGTAATAAGTACTCCCTCTGTCC 57.020 41.667 0.00 0.00 33.46 4.02
151 152 9.915629 CAATATGTAATAAGTACTCCCTCTGTC 57.084 37.037 0.00 0.00 33.46 3.51
152 153 9.656323 TCAATATGTAATAAGTACTCCCTCTGT 57.344 33.333 0.00 0.00 33.46 3.41
165 166 8.604890 TCACGCACGATTTTCAATATGTAATAA 58.395 29.630 0.00 0.00 29.06 1.40
169 170 6.311690 TCTTCACGCACGATTTTCAATATGTA 59.688 34.615 0.00 0.00 0.00 2.29
182 183 1.136774 CCTCGATCTTCACGCACGA 59.863 57.895 0.00 0.00 0.00 4.35
188 189 1.770294 ACTCCTCCCTCGATCTTCAC 58.230 55.000 0.00 0.00 0.00 3.18
198 199 9.004231 AGTAATTTATGTTTGATACTCCTCCCT 57.996 33.333 0.00 0.00 0.00 4.20
200 201 9.274206 GGAGTAATTTATGTTTGATACTCCTCC 57.726 37.037 18.06 0.00 45.23 4.30
215 218 6.700520 CGCCTTCGACTTTAGGAGTAATTTAT 59.299 38.462 5.02 0.00 39.19 1.40
242 245 2.368548 CACCTCAATATCGATGGGGACA 59.631 50.000 10.42 0.00 41.22 4.02
303 307 0.321298 GGCACCCACACAACGTCTAT 60.321 55.000 0.00 0.00 0.00 1.98
324 328 6.594937 GGTCATAACGTAACCCAAGAACAATA 59.405 38.462 0.00 0.00 0.00 1.90
325 329 5.413523 GGTCATAACGTAACCCAAGAACAAT 59.586 40.000 0.00 0.00 0.00 2.71
327 331 4.317488 GGTCATAACGTAACCCAAGAACA 58.683 43.478 0.00 0.00 0.00 3.18
328 332 3.368843 CGGTCATAACGTAACCCAAGAAC 59.631 47.826 0.00 0.00 0.00 3.01
330 334 2.094078 CCGGTCATAACGTAACCCAAGA 60.094 50.000 0.00 0.00 0.00 3.02
331 335 2.273557 CCGGTCATAACGTAACCCAAG 58.726 52.381 0.00 0.00 0.00 3.61
332 336 1.622811 ACCGGTCATAACGTAACCCAA 59.377 47.619 0.00 0.00 0.00 4.12
335 371 2.094545 AGACACCGGTCATAACGTAACC 60.095 50.000 2.59 0.00 46.80 2.85
341 377 3.587797 TTGAGAGACACCGGTCATAAC 57.412 47.619 2.59 0.00 46.80 1.89
346 382 4.755411 TGATATTTTGAGAGACACCGGTC 58.245 43.478 2.59 0.00 44.66 4.79
348 384 5.063944 CACTTGATATTTTGAGAGACACCGG 59.936 44.000 0.00 0.00 0.00 5.28
398 435 5.133221 AGGTTGAACTTCAGTTGCTGTTAT 58.867 37.500 0.00 0.00 38.56 1.89
411 448 1.000955 AGTGCGATCGAGGTTGAACTT 59.999 47.619 21.57 0.00 0.00 2.66
412 449 0.603569 AGTGCGATCGAGGTTGAACT 59.396 50.000 21.57 6.81 0.00 3.01
413 450 2.273370 TAGTGCGATCGAGGTTGAAC 57.727 50.000 21.57 4.59 0.00 3.18
414 451 2.490509 TCTTAGTGCGATCGAGGTTGAA 59.509 45.455 21.57 3.49 0.00 2.69
415 452 2.089201 TCTTAGTGCGATCGAGGTTGA 58.911 47.619 21.57 6.19 0.00 3.18
416 453 2.561733 TCTTAGTGCGATCGAGGTTG 57.438 50.000 21.57 3.74 0.00 3.77
494 531 3.861797 CGGAATGTCCCCTCCCGG 61.862 72.222 0.00 0.00 36.81 5.73
496 533 1.345715 ATGTCGGAATGTCCCCTCCC 61.346 60.000 0.00 0.00 31.13 4.30
529 569 8.674263 AAATTTTGCATGTCTATCCACAAAAA 57.326 26.923 0.00 0.00 39.56 1.94
558 604 5.004821 CGTCTCTGATTGATTAAGGTTCGTG 59.995 44.000 0.00 0.00 0.00 4.35
612 658 1.681264 GACTTGGTTGTCAACTTGGGG 59.319 52.381 15.17 4.86 36.97 4.96
752 798 2.359107 ACATGTGGTCAGCAGGCG 60.359 61.111 0.00 0.00 0.00 5.52
826 873 3.538591 GGAGGTATCGTCGGGAATTTTT 58.461 45.455 0.00 0.00 0.00 1.94
827 874 2.482490 CGGAGGTATCGTCGGGAATTTT 60.482 50.000 0.00 0.00 0.00 1.82
828 875 1.068127 CGGAGGTATCGTCGGGAATTT 59.932 52.381 0.00 0.00 0.00 1.82
829 876 0.672342 CGGAGGTATCGTCGGGAATT 59.328 55.000 0.00 0.00 0.00 2.17
830 877 1.803366 GCGGAGGTATCGTCGGGAAT 61.803 60.000 0.00 0.00 0.00 3.01
832 879 2.903855 GCGGAGGTATCGTCGGGA 60.904 66.667 0.00 0.00 0.00 5.14
833 880 3.974757 GGCGGAGGTATCGTCGGG 61.975 72.222 0.00 0.00 0.00 5.14
917 967 4.161102 ACTAGGTAAGCAAGAGTGTCCTT 58.839 43.478 0.00 0.00 0.00 3.36
957 1011 0.520847 GAGTGCAAGAAGCCAAGAGC 59.479 55.000 0.00 0.00 44.83 4.09
958 1012 0.795085 CGAGTGCAAGAAGCCAAGAG 59.205 55.000 0.00 0.00 44.83 2.85
959 1013 1.230635 GCGAGTGCAAGAAGCCAAGA 61.231 55.000 0.00 0.00 44.83 3.02
960 1014 1.208614 GCGAGTGCAAGAAGCCAAG 59.791 57.895 0.00 0.00 44.83 3.61
961 1015 3.343972 GCGAGTGCAAGAAGCCAA 58.656 55.556 0.00 0.00 44.83 4.52
972 1026 4.489795 GTGCGTGCGATGCGAGTG 62.490 66.667 0.00 0.00 31.36 3.51
1062 1119 2.440599 GGGTTGATGTGGCCCTGT 59.559 61.111 0.00 0.00 39.31 4.00
1194 1251 3.667282 CCGTCGACGTGGTCCACT 61.667 66.667 33.49 7.04 37.74 4.00
1371 1428 1.743391 CACCGTGTACACCACCTGA 59.257 57.895 20.11 0.00 41.26 3.86
1656 2941 3.674523 AGCACGTCGAGCAGCTCA 61.675 61.111 22.49 6.83 30.05 4.26
1776 3061 3.986116 GAAGGAGAGGACGGGGCCT 62.986 68.421 0.84 0.00 42.17 5.19
1825 3128 1.261619 CTTGAACAGGTCGTTGCTGTC 59.738 52.381 0.00 0.00 38.19 3.51
2109 3431 2.881266 GCAGTGCGTCACGAAGCAA 61.881 57.895 0.00 0.00 46.49 3.91
2481 3814 1.739466 TCTGTCGATTTGGATTGCAGC 59.261 47.619 0.00 0.00 0.00 5.25
2564 3945 1.141858 GGATCTTTCCCAGGTAGCAGG 59.858 57.143 0.00 0.00 35.84 4.85
2584 3965 2.930040 AGACAAGATACGAACGGCATTG 59.070 45.455 0.00 1.60 0.00 2.82
2605 3986 2.357034 GGCGAAACGAGTGCCTCA 60.357 61.111 0.00 0.00 45.40 3.86
2684 4066 7.760607 ACAGAGGGAGTAGATGATTATAGTCA 58.239 38.462 0.00 0.00 0.00 3.41
2685 4067 7.338449 GGACAGAGGGAGTAGATGATTATAGTC 59.662 44.444 0.00 0.00 0.00 2.59
2720 4102 9.646336 GACGCGATTGTAAAAATGTCTTATATT 57.354 29.630 15.93 0.00 0.00 1.28
2730 4112 4.472286 CAGGTTGACGCGATTGTAAAAAT 58.528 39.130 15.93 0.00 0.00 1.82
2780 4162 3.321497 GACCTATTGGCATGTCGAGATC 58.679 50.000 0.00 0.00 36.63 2.75
2788 4399 1.202568 TGCTCTCGACCTATTGGCATG 60.203 52.381 0.00 0.00 36.63 4.06
2855 4466 4.494484 CATTACTCTCAATGGTGTCACGA 58.506 43.478 0.00 0.00 33.16 4.35
2866 4477 3.181475 GGAGCATCGTCCATTACTCTCAA 60.181 47.826 0.00 0.00 36.51 3.02
2880 4491 5.067674 TGAAGGAAATTTTATGGGAGCATCG 59.932 40.000 0.00 0.00 34.37 3.84
2889 4500 8.190122 TGTCGGAATCATGAAGGAAATTTTATG 58.810 33.333 0.00 0.00 0.00 1.90
2898 4509 5.355071 CAGAATTTGTCGGAATCATGAAGGA 59.645 40.000 0.00 0.00 0.00 3.36
2899 4510 5.124457 ACAGAATTTGTCGGAATCATGAAGG 59.876 40.000 0.00 0.00 33.87 3.46
2931 4542 2.733671 CGGTCGCAGTGTGCATCTG 61.734 63.158 14.72 14.72 45.36 2.90
2932 4543 2.433145 CGGTCGCAGTGTGCATCT 60.433 61.111 0.00 0.00 45.36 2.90
2947 4558 2.587194 CCAGATTGCTCGCCTCGG 60.587 66.667 0.00 0.00 0.00 4.63
2972 4583 3.378427 CACTAGGCTACTGAAAAATGGGC 59.622 47.826 0.00 0.00 0.00 5.36
2983 4594 4.874966 CAGTAGAACGTACACTAGGCTACT 59.125 45.833 0.00 0.00 37.99 2.57
2991 4602 4.141869 ACCAAAACCAGTAGAACGTACACT 60.142 41.667 0.00 0.00 0.00 3.55
2992 4603 4.122046 ACCAAAACCAGTAGAACGTACAC 58.878 43.478 0.00 0.00 0.00 2.90
2994 4605 5.177511 GGTTACCAAAACCAGTAGAACGTAC 59.822 44.000 0.00 0.00 40.03 3.67
2995 4606 5.070313 AGGTTACCAAAACCAGTAGAACGTA 59.930 40.000 3.51 0.00 42.69 3.57
2996 4607 4.129380 GGTTACCAAAACCAGTAGAACGT 58.871 43.478 0.00 0.00 40.03 3.99
2997 4608 4.383173 AGGTTACCAAAACCAGTAGAACG 58.617 43.478 3.51 0.00 42.69 3.95
2998 4609 6.060136 AGAAGGTTACCAAAACCAGTAGAAC 58.940 40.000 3.51 0.00 42.69 3.01
2999 4610 6.256643 AGAAGGTTACCAAAACCAGTAGAA 57.743 37.500 3.51 0.00 42.69 2.10
3000 4611 5.899631 AGAAGGTTACCAAAACCAGTAGA 57.100 39.130 3.51 0.00 42.69 2.59
3001 4612 7.001099 TCTAGAAGGTTACCAAAACCAGTAG 57.999 40.000 3.51 6.74 42.69 2.57
3002 4613 6.999705 TCTAGAAGGTTACCAAAACCAGTA 57.000 37.500 3.51 0.00 42.69 2.74
3003 4614 5.899631 TCTAGAAGGTTACCAAAACCAGT 57.100 39.130 3.51 0.00 42.69 4.00
3004 4615 6.803154 CTTCTAGAAGGTTACCAAAACCAG 57.197 41.667 22.67 0.00 42.69 4.00
3018 4629 4.602995 CCGATTCGAGAACCTTCTAGAAG 58.397 47.826 23.31 23.31 46.80 2.85
3020 4631 2.358267 GCCGATTCGAGAACCTTCTAGA 59.642 50.000 7.83 0.00 37.73 2.43
3021 4632 2.359531 AGCCGATTCGAGAACCTTCTAG 59.640 50.000 7.83 0.00 37.73 2.43
3022 4633 2.376109 AGCCGATTCGAGAACCTTCTA 58.624 47.619 7.83 0.00 37.73 2.10
3023 4634 1.187087 AGCCGATTCGAGAACCTTCT 58.813 50.000 7.83 0.00 41.00 2.85
3024 4635 2.011540 AAGCCGATTCGAGAACCTTC 57.988 50.000 7.83 0.00 0.00 3.46
3025 4636 2.474410 AAAGCCGATTCGAGAACCTT 57.526 45.000 7.83 0.00 0.00 3.50
3026 4637 2.289444 TGAAAAGCCGATTCGAGAACCT 60.289 45.455 7.83 0.00 0.00 3.50
3027 4638 2.073816 TGAAAAGCCGATTCGAGAACC 58.926 47.619 7.83 0.00 0.00 3.62
3028 4639 3.125316 ACATGAAAAGCCGATTCGAGAAC 59.875 43.478 7.83 0.00 0.00 3.01
3029 4640 3.334691 ACATGAAAAGCCGATTCGAGAA 58.665 40.909 7.83 0.00 0.00 2.87
3030 4641 2.972625 ACATGAAAAGCCGATTCGAGA 58.027 42.857 7.83 0.00 0.00 4.04
3031 4642 3.120199 ACAACATGAAAAGCCGATTCGAG 60.120 43.478 7.83 0.00 0.00 4.04
3032 4643 2.811431 ACAACATGAAAAGCCGATTCGA 59.189 40.909 7.83 0.00 0.00 3.71
3033 4644 3.201726 ACAACATGAAAAGCCGATTCG 57.798 42.857 0.00 0.00 0.00 3.34
3034 4645 4.298332 ACAACAACATGAAAAGCCGATTC 58.702 39.130 0.00 0.00 0.00 2.52
3035 4646 4.320608 ACAACAACATGAAAAGCCGATT 57.679 36.364 0.00 0.00 0.00 3.34
3036 4647 4.320608 AACAACAACATGAAAAGCCGAT 57.679 36.364 0.00 0.00 0.00 4.18
3037 4648 3.791973 AACAACAACATGAAAAGCCGA 57.208 38.095 0.00 0.00 0.00 5.54
3038 4649 4.856115 AAAACAACAACATGAAAAGCCG 57.144 36.364 0.00 0.00 0.00 5.52
3118 4729 9.230122 ACAAGTTTGGAAATTCTGAACATTTTT 57.770 25.926 12.02 0.00 0.00 1.94
3119 4730 8.791327 ACAAGTTTGGAAATTCTGAACATTTT 57.209 26.923 12.02 0.00 0.00 1.82
3120 4731 8.791327 AACAAGTTTGGAAATTCTGAACATTT 57.209 26.923 12.02 0.00 0.00 2.32
3121 4732 8.040132 TGAACAAGTTTGGAAATTCTGAACATT 58.960 29.630 12.02 0.00 0.00 2.71
3122 4733 7.555087 TGAACAAGTTTGGAAATTCTGAACAT 58.445 30.769 12.02 1.37 0.00 2.71
3123 4734 6.929625 TGAACAAGTTTGGAAATTCTGAACA 58.070 32.000 12.02 0.00 0.00 3.18
3124 4735 7.826260 TTGAACAAGTTTGGAAATTCTGAAC 57.174 32.000 0.00 0.00 0.00 3.18
3125 4736 8.839310 TTTTGAACAAGTTTGGAAATTCTGAA 57.161 26.923 0.00 0.00 0.00 3.02
3126 4737 9.447157 AATTTTGAACAAGTTTGGAAATTCTGA 57.553 25.926 0.00 0.00 0.00 3.27
3162 4773 9.883142 AACCTGAACAAAACTTCAAATTATGAA 57.117 25.926 3.95 3.95 45.71 2.57
3163 4774 9.883142 AAACCTGAACAAAACTTCAAATTATGA 57.117 25.926 0.00 0.00 35.85 2.15
3166 4777 9.712305 TGAAAACCTGAACAAAACTTCAAATTA 57.288 25.926 0.00 0.00 29.66 1.40
3167 4778 8.614469 TGAAAACCTGAACAAAACTTCAAATT 57.386 26.923 0.00 0.00 29.66 1.82
3168 4779 8.614469 TTGAAAACCTGAACAAAACTTCAAAT 57.386 26.923 0.00 0.00 30.78 2.32
3169 4780 8.438676 TTTGAAAACCTGAACAAAACTTCAAA 57.561 26.923 0.00 0.00 38.51 2.69
3170 4781 8.438676 TTTTGAAAACCTGAACAAAACTTCAA 57.561 26.923 0.00 0.00 37.33 2.69
3171 4782 8.438676 TTTTTGAAAACCTGAACAAAACTTCA 57.561 26.923 0.00 0.00 40.33 3.02
3207 4818 9.872721 AACAAAATTGAAATTCCAAGCATTTTT 57.127 22.222 0.00 0.00 0.00 1.94
3208 4819 9.518906 GAACAAAATTGAAATTCCAAGCATTTT 57.481 25.926 0.00 0.00 0.00 1.82
3209 4820 8.684520 TGAACAAAATTGAAATTCCAAGCATTT 58.315 25.926 0.00 0.00 0.00 2.32
3210 4821 8.223177 TGAACAAAATTGAAATTCCAAGCATT 57.777 26.923 0.00 0.00 0.00 3.56
3211 4822 7.804843 TGAACAAAATTGAAATTCCAAGCAT 57.195 28.000 0.00 0.00 0.00 3.79
3212 4823 7.804843 ATGAACAAAATTGAAATTCCAAGCA 57.195 28.000 0.00 0.00 0.00 3.91
3304 4915 9.307121 TGAACATTTGTTTAAAACGTGATCATT 57.693 25.926 0.00 0.00 38.56 2.57
3305 4916 8.864069 TGAACATTTGTTTAAAACGTGATCAT 57.136 26.923 0.00 0.00 38.56 2.45
3306 4917 8.750416 CATGAACATTTGTTTAAAACGTGATCA 58.250 29.630 0.00 0.00 38.56 2.92
3307 4918 8.751335 ACATGAACATTTGTTTAAAACGTGATC 58.249 29.630 0.00 0.00 38.56 2.92
3308 4919 8.641499 ACATGAACATTTGTTTAAAACGTGAT 57.359 26.923 0.00 0.00 38.56 3.06
3309 4920 8.467402 AACATGAACATTTGTTTAAAACGTGA 57.533 26.923 0.00 0.00 38.56 4.35
3310 4921 9.535270 AAAACATGAACATTTGTTTAAAACGTG 57.465 25.926 0.00 0.00 43.33 4.49
3360 4971 8.180920 CGAACACCTTTTGAAAATTCCATTTTT 58.819 29.630 0.00 0.00 42.15 1.94
3361 4972 7.678454 GCGAACACCTTTTGAAAATTCCATTTT 60.678 33.333 0.00 0.00 44.56 1.82
3362 4973 6.238347 GCGAACACCTTTTGAAAATTCCATTT 60.238 34.615 0.00 0.00 0.00 2.32
3363 4974 5.236263 GCGAACACCTTTTGAAAATTCCATT 59.764 36.000 0.00 0.00 0.00 3.16
3364 4975 4.749598 GCGAACACCTTTTGAAAATTCCAT 59.250 37.500 0.00 0.00 0.00 3.41
3365 4976 4.116238 GCGAACACCTTTTGAAAATTCCA 58.884 39.130 0.00 0.00 0.00 3.53
3366 4977 4.026062 GTGCGAACACCTTTTGAAAATTCC 60.026 41.667 0.00 0.00 41.21 3.01
3367 4978 5.065791 GTGCGAACACCTTTTGAAAATTC 57.934 39.130 0.00 0.00 41.21 2.17
3387 4998 7.202526 TGAAATCCTCAAGCAGTTTTAAAGTG 58.797 34.615 8.07 8.07 34.90 3.16
3388 4999 7.346751 TGAAATCCTCAAGCAGTTTTAAAGT 57.653 32.000 0.00 0.00 0.00 2.66
3389 5000 8.647143 TTTGAAATCCTCAAGCAGTTTTAAAG 57.353 30.769 0.00 0.00 44.84 1.85
3390 5001 9.442047 TTTTTGAAATCCTCAAGCAGTTTTAAA 57.558 25.926 0.00 0.00 44.84 1.52
3391 5002 8.878769 GTTTTTGAAATCCTCAAGCAGTTTTAA 58.121 29.630 0.00 0.00 44.84 1.52
3392 5003 8.257306 AGTTTTTGAAATCCTCAAGCAGTTTTA 58.743 29.630 0.00 0.00 44.84 1.52
3393 5004 7.064966 CAGTTTTTGAAATCCTCAAGCAGTTTT 59.935 33.333 0.00 0.00 44.84 2.43
3394 5005 6.536224 CAGTTTTTGAAATCCTCAAGCAGTTT 59.464 34.615 0.00 0.00 44.84 2.66
3395 5006 6.044682 CAGTTTTTGAAATCCTCAAGCAGTT 58.955 36.000 0.00 0.00 44.84 3.16
3396 5007 5.127682 ACAGTTTTTGAAATCCTCAAGCAGT 59.872 36.000 0.00 0.00 44.84 4.40
3397 5008 5.594926 ACAGTTTTTGAAATCCTCAAGCAG 58.405 37.500 0.00 0.00 44.84 4.24
3398 5009 5.596836 ACAGTTTTTGAAATCCTCAAGCA 57.403 34.783 0.00 0.00 44.84 3.91
3399 5010 5.173854 CGAACAGTTTTTGAAATCCTCAAGC 59.826 40.000 0.00 0.00 44.84 4.01
3400 5011 6.197096 CACGAACAGTTTTTGAAATCCTCAAG 59.803 38.462 0.00 0.00 44.84 3.02
3401 5012 6.033341 CACGAACAGTTTTTGAAATCCTCAA 58.967 36.000 0.00 0.00 42.48 3.02
3402 5013 5.577835 CACGAACAGTTTTTGAAATCCTCA 58.422 37.500 0.00 0.00 0.00 3.86
3403 5014 4.441087 GCACGAACAGTTTTTGAAATCCTC 59.559 41.667 0.00 0.00 0.00 3.71
3404 5015 4.097892 AGCACGAACAGTTTTTGAAATCCT 59.902 37.500 0.00 0.00 0.00 3.24
3405 5016 4.359706 AGCACGAACAGTTTTTGAAATCC 58.640 39.130 0.00 0.00 0.00 3.01
3406 5017 5.949233 AAGCACGAACAGTTTTTGAAATC 57.051 34.783 0.00 0.00 0.00 2.17
3407 5018 7.820044 TTAAAGCACGAACAGTTTTTGAAAT 57.180 28.000 0.00 0.00 0.00 2.17
3408 5019 7.639162 TTTAAAGCACGAACAGTTTTTGAAA 57.361 28.000 0.00 0.00 0.00 2.69
3409 5020 7.595502 TCTTTTAAAGCACGAACAGTTTTTGAA 59.404 29.630 0.00 0.00 0.00 2.69
3410 5021 7.085116 TCTTTTAAAGCACGAACAGTTTTTGA 58.915 30.769 0.00 0.00 0.00 2.69
3411 5022 7.271936 TCTTTTAAAGCACGAACAGTTTTTG 57.728 32.000 0.00 0.00 0.00 2.44
3412 5023 7.876896 TTCTTTTAAAGCACGAACAGTTTTT 57.123 28.000 0.00 0.00 0.00 1.94
3413 5024 7.544217 ACATTCTTTTAAAGCACGAACAGTTTT 59.456 29.630 0.00 0.00 0.00 2.43
3414 5025 7.033185 ACATTCTTTTAAAGCACGAACAGTTT 58.967 30.769 0.00 0.00 0.00 2.66
3415 5026 6.560711 ACATTCTTTTAAAGCACGAACAGTT 58.439 32.000 0.00 0.00 0.00 3.16
3416 5027 6.131544 ACATTCTTTTAAAGCACGAACAGT 57.868 33.333 0.00 0.00 0.00 3.55
3417 5028 6.690957 TGAACATTCTTTTAAAGCACGAACAG 59.309 34.615 0.00 0.00 0.00 3.16
3418 5029 6.556212 TGAACATTCTTTTAAAGCACGAACA 58.444 32.000 0.00 0.00 0.00 3.18
3419 5030 6.910433 TCTGAACATTCTTTTAAAGCACGAAC 59.090 34.615 0.00 0.00 0.00 3.95
3420 5031 7.022055 TCTGAACATTCTTTTAAAGCACGAA 57.978 32.000 0.00 0.00 0.00 3.85
3421 5032 6.612247 TCTGAACATTCTTTTAAAGCACGA 57.388 33.333 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.