Multiple sequence alignment - TraesCS3A01G117800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G117800 chr3A 100.000 6658 0 0 1 6658 88541732 88548389 0.000000e+00 12296.0
1 TraesCS3A01G117800 chr3D 94.585 5983 207 44 754 6658 75139866 75145809 0.000000e+00 9145.0
2 TraesCS3A01G117800 chr3B 95.384 2968 107 8 2597 5562 120617077 120620016 0.000000e+00 4695.0
3 TraesCS3A01G117800 chr3B 90.326 1902 99 39 735 2595 120615055 120616912 0.000000e+00 2414.0
4 TraesCS3A01G117800 chr3B 94.123 1106 41 10 5561 6658 120620194 120621283 0.000000e+00 1661.0
5 TraesCS3A01G117800 chr7D 80.651 553 73 19 6 545 66984184 66983653 1.350000e-106 398.0
6 TraesCS3A01G117800 chr7D 79.195 149 24 7 1 144 66984323 66984177 5.500000e-16 97.1
7 TraesCS3A01G117800 chr7D 75.714 210 36 12 1 204 573456620 573456420 2.560000e-14 91.6
8 TraesCS3A01G117800 chr5A 87.778 90 6 4 1 86 447320384 447320472 4.250000e-17 100.0
9 TraesCS3A01G117800 chr4D 100.000 31 0 0 659 689 223633452 223633422 2.590000e-04 58.4
10 TraesCS3A01G117800 chr1A 97.059 34 0 1 660 692 14792370 14792337 1.000000e-03 56.5
11 TraesCS3A01G117800 chr7A 100.000 28 0 0 661 688 14277800 14277773 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G117800 chr3A 88541732 88548389 6657 False 12296.000000 12296 100.000000 1 6658 1 chr3A.!!$F1 6657
1 TraesCS3A01G117800 chr3D 75139866 75145809 5943 False 9145.000000 9145 94.585000 754 6658 1 chr3D.!!$F1 5904
2 TraesCS3A01G117800 chr3B 120615055 120621283 6228 False 2923.333333 4695 93.277667 735 6658 3 chr3B.!!$F1 5923
3 TraesCS3A01G117800 chr7D 66983653 66984323 670 True 247.550000 398 79.923000 1 545 2 chr7D.!!$R2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 573 0.183492 AACAGCTGGGAAACTCTGCA 59.817 50.0 19.93 0.0 0.00 4.41 F
573 574 0.183492 ACAGCTGGGAAACTCTGCAA 59.817 50.0 19.93 0.0 0.00 4.08 F
575 576 0.251077 AGCTGGGAAACTCTGCAAGG 60.251 55.0 0.00 0.0 0.00 3.61 F
619 620 0.328592 TACGTTAATGGGCTTGCCCA 59.671 50.0 32.30 32.3 44.62 5.36 F
722 723 0.452987 CATTTCACCTGCCCATGACG 59.547 55.0 0.00 0.0 0.00 4.35 F
2634 2888 0.595095 CCTTGTCTTTGTGCTGCCTC 59.405 55.0 0.00 0.0 0.00 4.70 F
3229 3485 1.131037 CGTGTTTGTGCGTGTTGGTG 61.131 55.0 0.00 0.0 0.00 4.17 F
4477 4743 0.034337 TTCCCGAACTGAGGTTTCCG 59.966 55.0 0.00 0.0 35.58 4.30 F
5287 5553 0.329596 AGAGACCAGCAATGTTCCCC 59.670 55.0 0.00 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1812 1.135094 CTCTCTGCATATGGTGGGGT 58.865 55.000 4.56 0.0 0.00 4.95 R
2571 2644 2.038557 GGAGTAGAGTTTCCAGGCACAA 59.961 50.000 0.00 0.0 33.55 3.33 R
2634 2888 3.442625 AGCACTCCAATGTGATGACAATG 59.557 43.478 0.00 0.0 40.12 2.82 R
2636 2890 3.144657 AGCACTCCAATGTGATGACAA 57.855 42.857 0.00 0.0 40.12 3.18 R
2647 2901 3.440173 GCAAGCACTAAATAGCACTCCAA 59.560 43.478 0.00 0.0 0.00 3.53 R
3993 4252 0.530870 GGCGCAGGTTCTGATACTCC 60.531 60.000 10.83 0.0 32.44 3.85 R
4908 5174 0.733909 CTGCGCTCGTGTTCATCTCA 60.734 55.000 9.73 0.0 0.00 3.27 R
5423 5689 1.354040 CAGATAGATTCATCGCGGCC 58.646 55.000 6.13 0.0 0.00 6.13 R
6619 7092 2.104111 TGTTATAGAACCGCCTCATGGG 59.896 50.000 0.00 0.0 34.38 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.323985 TGAAAAATCCTAAACAATTTGAAGTGG 57.676 29.630 2.79 0.86 0.00 4.00
90 91 8.675705 AAAAATCCTAAACAATTTGAAGTGGG 57.324 30.769 2.79 0.00 0.00 4.61
91 92 7.610580 AAATCCTAAACAATTTGAAGTGGGA 57.389 32.000 2.79 5.08 0.00 4.37
92 93 7.610580 AATCCTAAACAATTTGAAGTGGGAA 57.389 32.000 2.79 0.00 0.00 3.97
93 94 6.399639 TCCTAAACAATTTGAAGTGGGAAC 57.600 37.500 2.79 0.00 0.00 3.62
94 95 5.894393 TCCTAAACAATTTGAAGTGGGAACA 59.106 36.000 2.79 0.00 38.70 3.18
95 96 6.381420 TCCTAAACAATTTGAAGTGGGAACAA 59.619 34.615 2.79 0.00 46.06 2.83
96 97 7.044798 CCTAAACAATTTGAAGTGGGAACAAA 58.955 34.615 2.79 0.00 46.06 2.83
97 98 7.714813 CCTAAACAATTTGAAGTGGGAACAAAT 59.285 33.333 2.79 0.00 46.06 2.32
99 100 7.936496 AACAATTTGAAGTGGGAACAAATTT 57.064 28.000 12.31 0.00 45.55 1.82
100 101 7.936496 ACAATTTGAAGTGGGAACAAATTTT 57.064 28.000 12.31 6.08 45.55 1.82
101 102 7.760437 ACAATTTGAAGTGGGAACAAATTTTG 58.240 30.769 7.59 7.59 45.55 2.44
102 103 7.609532 ACAATTTGAAGTGGGAACAAATTTTGA 59.390 29.630 15.81 0.00 45.55 2.69
103 104 8.457261 CAATTTGAAGTGGGAACAAATTTTGAA 58.543 29.630 15.81 0.00 45.55 2.69
104 105 8.750515 ATTTGAAGTGGGAACAAATTTTGAAT 57.249 26.923 15.81 4.26 46.06 2.57
105 106 9.844257 ATTTGAAGTGGGAACAAATTTTGAATA 57.156 25.926 15.81 0.00 46.06 1.75
106 107 9.844257 TTTGAAGTGGGAACAAATTTTGAATAT 57.156 25.926 15.81 0.00 46.06 1.28
107 108 8.830201 TGAAGTGGGAACAAATTTTGAATATG 57.170 30.769 15.81 0.00 46.06 1.78
108 109 8.428063 TGAAGTGGGAACAAATTTTGAATATGT 58.572 29.630 15.81 0.00 46.06 2.29
109 110 9.271828 GAAGTGGGAACAAATTTTGAATATGTT 57.728 29.630 15.81 0.00 46.06 2.71
167 168 9.971922 AAATTTTGTGAACAATTTTTGGAAACA 57.028 22.222 0.00 0.00 35.55 2.83
169 170 6.734104 TTGTGAACAATTTTTGGAAACAGG 57.266 33.333 0.00 0.00 44.54 4.00
173 174 5.877564 TGAACAATTTTTGGAAACAGGGAAC 59.122 36.000 0.00 0.00 44.54 3.62
174 175 5.428184 ACAATTTTTGGAAACAGGGAACA 57.572 34.783 0.00 0.00 44.54 3.18
179 180 7.953005 ATTTTTGGAAACAGGGAACATTTTT 57.047 28.000 0.00 0.00 44.54 1.94
202 203 9.609346 TTTTTGAAACCCCGTTCATTATTTAAA 57.391 25.926 0.00 0.00 37.36 1.52
203 204 9.609346 TTTTGAAACCCCGTTCATTATTTAAAA 57.391 25.926 0.00 0.00 37.36 1.52
204 205 9.780186 TTTGAAACCCCGTTCATTATTTAAAAT 57.220 25.926 0.00 0.00 37.36 1.82
205 206 8.764524 TGAAACCCCGTTCATTATTTAAAATG 57.235 30.769 0.00 0.00 38.05 2.32
206 207 8.368668 TGAAACCCCGTTCATTATTTAAAATGT 58.631 29.630 0.00 0.00 37.94 2.71
207 208 9.857957 GAAACCCCGTTCATTATTTAAAATGTA 57.142 29.630 0.00 0.00 37.94 2.29
208 209 9.642327 AAACCCCGTTCATTATTTAAAATGTAC 57.358 29.630 0.00 0.00 37.94 2.90
209 210 8.584063 ACCCCGTTCATTATTTAAAATGTACT 57.416 30.769 0.00 0.00 35.91 2.73
210 211 9.683870 ACCCCGTTCATTATTTAAAATGTACTA 57.316 29.630 0.00 0.00 35.91 1.82
233 234 9.516314 ACTAAAGAAAAGAAAAGAAACATTCCG 57.484 29.630 0.00 0.00 0.00 4.30
234 235 6.828502 AAGAAAAGAAAAGAAACATTCCGC 57.171 33.333 0.00 0.00 0.00 5.54
235 236 4.976116 AGAAAAGAAAAGAAACATTCCGCG 59.024 37.500 0.00 0.00 0.00 6.46
236 237 2.331809 AGAAAAGAAACATTCCGCGC 57.668 45.000 0.00 0.00 0.00 6.86
237 238 1.606668 AGAAAAGAAACATTCCGCGCA 59.393 42.857 8.75 0.00 0.00 6.09
238 239 2.034053 AGAAAAGAAACATTCCGCGCAA 59.966 40.909 8.75 0.00 0.00 4.85
239 240 1.766069 AAAGAAACATTCCGCGCAAC 58.234 45.000 8.75 0.00 0.00 4.17
240 241 0.951558 AAGAAACATTCCGCGCAACT 59.048 45.000 8.75 0.00 0.00 3.16
241 242 0.951558 AGAAACATTCCGCGCAACTT 59.048 45.000 8.75 0.00 0.00 2.66
242 243 1.336755 AGAAACATTCCGCGCAACTTT 59.663 42.857 8.75 0.00 0.00 2.66
243 244 2.124122 GAAACATTCCGCGCAACTTTT 58.876 42.857 8.75 0.00 0.00 2.27
244 245 1.486439 AACATTCCGCGCAACTTTTG 58.514 45.000 8.75 0.00 0.00 2.44
245 246 0.665835 ACATTCCGCGCAACTTTTGA 59.334 45.000 8.75 0.00 0.00 2.69
246 247 1.269448 ACATTCCGCGCAACTTTTGAT 59.731 42.857 8.75 0.00 0.00 2.57
247 248 2.486203 ACATTCCGCGCAACTTTTGATA 59.514 40.909 8.75 0.00 0.00 2.15
248 249 3.057876 ACATTCCGCGCAACTTTTGATAA 60.058 39.130 8.75 0.00 0.00 1.75
249 250 3.627732 TTCCGCGCAACTTTTGATAAA 57.372 38.095 8.75 0.00 0.00 1.40
250 251 2.923643 TCCGCGCAACTTTTGATAAAC 58.076 42.857 8.75 0.00 0.00 2.01
251 252 2.290916 TCCGCGCAACTTTTGATAAACA 59.709 40.909 8.75 0.00 0.00 2.83
252 253 2.656422 CCGCGCAACTTTTGATAAACAG 59.344 45.455 8.75 0.00 0.00 3.16
253 254 3.550561 CGCGCAACTTTTGATAAACAGA 58.449 40.909 8.75 0.00 0.00 3.41
254 255 3.971871 CGCGCAACTTTTGATAAACAGAA 59.028 39.130 8.75 0.00 0.00 3.02
255 256 4.439449 CGCGCAACTTTTGATAAACAGAAA 59.561 37.500 8.75 0.00 0.00 2.52
256 257 5.607359 CGCGCAACTTTTGATAAACAGAAAC 60.607 40.000 8.75 0.00 0.00 2.78
257 258 5.231147 GCGCAACTTTTGATAAACAGAAACA 59.769 36.000 0.30 0.00 0.00 2.83
258 259 6.074356 GCGCAACTTTTGATAAACAGAAACAT 60.074 34.615 0.30 0.00 0.00 2.71
259 260 7.516627 GCGCAACTTTTGATAAACAGAAACATT 60.517 33.333 0.30 0.00 0.00 2.71
260 261 8.327429 CGCAACTTTTGATAAACAGAAACATTT 58.673 29.630 0.00 0.00 0.00 2.32
261 262 9.986833 GCAACTTTTGATAAACAGAAACATTTT 57.013 25.926 0.00 0.00 0.00 1.82
290 291 6.812879 AGTCCCGAATTTTCGTTTAGAAAT 57.187 33.333 11.36 0.00 46.98 2.17
291 292 6.608610 AGTCCCGAATTTTCGTTTAGAAATG 58.391 36.000 11.36 0.00 46.98 2.32
292 293 6.206048 AGTCCCGAATTTTCGTTTAGAAATGT 59.794 34.615 11.36 0.00 46.98 2.71
293 294 6.304683 GTCCCGAATTTTCGTTTAGAAATGTG 59.695 38.462 11.36 0.00 46.98 3.21
294 295 6.205076 TCCCGAATTTTCGTTTAGAAATGTGA 59.795 34.615 11.36 0.00 46.98 3.58
295 296 6.858993 CCCGAATTTTCGTTTAGAAATGTGAA 59.141 34.615 11.36 0.00 46.98 3.18
296 297 7.149031 CCCGAATTTTCGTTTAGAAATGTGAAC 60.149 37.037 11.36 0.00 46.98 3.18
297 298 7.377397 CCGAATTTTCGTTTAGAAATGTGAACA 59.623 33.333 11.36 0.00 46.98 3.18
298 299 8.901748 CGAATTTTCGTTTAGAAATGTGAACAT 58.098 29.630 4.58 0.00 46.98 2.71
328 329 9.458374 TTGAATTCAGGAATAGTTTTCGAAAAC 57.542 29.630 35.52 35.52 46.54 2.43
339 340 5.788055 GTTTTCGAAAACACACCCATTTT 57.212 34.783 36.69 0.00 45.72 1.82
340 341 6.171932 GTTTTCGAAAACACACCCATTTTT 57.828 33.333 36.69 0.00 45.72 1.94
491 492 9.996554 AAAAAGAAAAGAACAAAGAAAGAAGGA 57.003 25.926 0.00 0.00 0.00 3.36
492 493 9.996554 AAAAGAAAAGAACAAAGAAAGAAGGAA 57.003 25.926 0.00 0.00 0.00 3.36
493 494 9.996554 AAAGAAAAGAACAAAGAAAGAAGGAAA 57.003 25.926 0.00 0.00 0.00 3.13
494 495 9.996554 AAGAAAAGAACAAAGAAAGAAGGAAAA 57.003 25.926 0.00 0.00 0.00 2.29
495 496 9.996554 AGAAAAGAACAAAGAAAGAAGGAAAAA 57.003 25.926 0.00 0.00 0.00 1.94
516 517 6.715344 AAAAAGAAACAGAAAAACCGGTTC 57.285 33.333 22.53 8.71 0.00 3.62
517 518 3.685836 AGAAACAGAAAAACCGGTTCG 57.314 42.857 22.53 9.51 0.00 3.95
544 545 7.147143 GAACCTTCTAGAAGATTCCCAAAAC 57.853 40.000 30.17 5.37 40.79 2.43
545 546 6.200878 ACCTTCTAGAAGATTCCCAAAACA 57.799 37.500 30.17 0.00 40.79 2.83
546 547 6.610830 ACCTTCTAGAAGATTCCCAAAACAA 58.389 36.000 30.17 0.00 40.79 2.83
547 548 7.066781 ACCTTCTAGAAGATTCCCAAAACAAA 58.933 34.615 30.17 0.00 40.79 2.83
548 549 7.563556 ACCTTCTAGAAGATTCCCAAAACAAAA 59.436 33.333 30.17 0.00 40.79 2.44
549 550 8.421002 CCTTCTAGAAGATTCCCAAAACAAAAA 58.579 33.333 30.17 0.00 40.79 1.94
571 572 1.322442 AAACAGCTGGGAAACTCTGC 58.678 50.000 19.93 0.00 0.00 4.26
572 573 0.183492 AACAGCTGGGAAACTCTGCA 59.817 50.000 19.93 0.00 0.00 4.41
573 574 0.183492 ACAGCTGGGAAACTCTGCAA 59.817 50.000 19.93 0.00 0.00 4.08
574 575 0.879765 CAGCTGGGAAACTCTGCAAG 59.120 55.000 5.57 0.00 0.00 4.01
575 576 0.251077 AGCTGGGAAACTCTGCAAGG 60.251 55.000 0.00 0.00 0.00 3.61
576 577 0.538287 GCTGGGAAACTCTGCAAGGT 60.538 55.000 0.00 0.00 0.00 3.50
577 578 1.271379 GCTGGGAAACTCTGCAAGGTA 60.271 52.381 0.00 0.00 0.00 3.08
578 579 2.427506 CTGGGAAACTCTGCAAGGTAC 58.572 52.381 0.00 0.00 0.00 3.34
579 580 1.073284 TGGGAAACTCTGCAAGGTACC 59.927 52.381 2.73 2.73 0.00 3.34
580 581 1.613520 GGGAAACTCTGCAAGGTACCC 60.614 57.143 8.74 13.53 32.15 3.69
581 582 1.073284 GGAAACTCTGCAAGGTACCCA 59.927 52.381 8.74 0.00 0.00 4.51
582 583 2.488347 GGAAACTCTGCAAGGTACCCAA 60.488 50.000 8.74 0.00 0.00 4.12
583 584 3.219281 GAAACTCTGCAAGGTACCCAAA 58.781 45.455 8.74 0.00 0.00 3.28
584 585 3.306472 AACTCTGCAAGGTACCCAAAA 57.694 42.857 8.74 0.00 0.00 2.44
585 586 2.583143 ACTCTGCAAGGTACCCAAAAC 58.417 47.619 8.74 0.00 0.00 2.43
586 587 2.174854 ACTCTGCAAGGTACCCAAAACT 59.825 45.455 8.74 0.00 0.00 2.66
587 588 2.554032 CTCTGCAAGGTACCCAAAACTG 59.446 50.000 8.74 0.00 0.00 3.16
588 589 1.613437 CTGCAAGGTACCCAAAACTGG 59.387 52.381 8.74 0.00 0.00 4.00
589 590 1.215673 TGCAAGGTACCCAAAACTGGA 59.784 47.619 8.74 0.00 0.00 3.86
590 591 2.312390 GCAAGGTACCCAAAACTGGAA 58.688 47.619 8.74 0.00 0.00 3.53
591 592 2.696187 GCAAGGTACCCAAAACTGGAAA 59.304 45.455 8.74 0.00 0.00 3.13
592 593 3.491964 GCAAGGTACCCAAAACTGGAAAC 60.492 47.826 8.74 0.00 0.00 2.78
593 594 3.673543 AGGTACCCAAAACTGGAAACA 57.326 42.857 8.74 0.00 39.59 2.83
594 595 3.293337 AGGTACCCAAAACTGGAAACAC 58.707 45.455 8.74 0.00 35.60 3.32
595 596 3.053170 AGGTACCCAAAACTGGAAACACT 60.053 43.478 8.74 0.00 35.60 3.55
596 597 4.166531 AGGTACCCAAAACTGGAAACACTA 59.833 41.667 8.74 0.00 35.60 2.74
597 598 5.074804 GGTACCCAAAACTGGAAACACTAT 58.925 41.667 0.00 0.00 35.60 2.12
598 599 6.044637 AGGTACCCAAAACTGGAAACACTATA 59.955 38.462 8.74 0.00 35.60 1.31
599 600 6.716173 GGTACCCAAAACTGGAAACACTATAA 59.284 38.462 0.00 0.00 35.60 0.98
600 601 7.395206 GGTACCCAAAACTGGAAACACTATAAT 59.605 37.037 0.00 0.00 35.60 1.28
601 602 9.452287 GTACCCAAAACTGGAAACACTATAATA 57.548 33.333 0.00 0.00 35.60 0.98
602 603 8.344446 ACCCAAAACTGGAAACACTATAATAC 57.656 34.615 0.00 0.00 35.60 1.89
603 604 7.120138 ACCCAAAACTGGAAACACTATAATACG 59.880 37.037 0.00 0.00 35.60 3.06
604 605 7.120138 CCCAAAACTGGAAACACTATAATACGT 59.880 37.037 0.00 0.00 35.60 3.57
605 606 8.508875 CCAAAACTGGAAACACTATAATACGTT 58.491 33.333 0.00 0.00 35.60 3.99
610 611 9.321562 ACTGGAAACACTATAATACGTTAATGG 57.678 33.333 0.00 0.00 35.60 3.16
611 612 8.665643 TGGAAACACTATAATACGTTAATGGG 57.334 34.615 0.00 0.00 33.40 4.00
612 613 7.227116 TGGAAACACTATAATACGTTAATGGGC 59.773 37.037 0.00 0.00 33.40 5.36
613 614 7.443272 GGAAACACTATAATACGTTAATGGGCT 59.557 37.037 0.00 0.00 0.00 5.19
614 615 8.741603 AAACACTATAATACGTTAATGGGCTT 57.258 30.769 0.00 0.00 0.00 4.35
615 616 7.724305 ACACTATAATACGTTAATGGGCTTG 57.276 36.000 0.00 0.00 0.00 4.01
616 617 6.204108 ACACTATAATACGTTAATGGGCTTGC 59.796 38.462 0.00 0.00 0.00 4.01
617 618 5.704053 ACTATAATACGTTAATGGGCTTGCC 59.296 40.000 2.49 2.49 0.00 4.52
618 619 1.687563 ATACGTTAATGGGCTTGCCC 58.312 50.000 22.91 22.91 0.00 5.36
619 620 0.328592 TACGTTAATGGGCTTGCCCA 59.671 50.000 32.30 32.30 44.62 5.36
620 621 0.965363 ACGTTAATGGGCTTGCCCAG 60.965 55.000 32.97 22.86 43.67 4.45
628 629 3.815396 GCTTGCCCAGCTTACCGC 61.815 66.667 0.00 0.00 46.27 5.68
637 638 3.794270 GCTTACCGCTTGATCGCA 58.206 55.556 0.00 0.00 35.14 5.10
638 639 1.638467 GCTTACCGCTTGATCGCAG 59.362 57.895 0.00 0.00 35.14 5.18
639 640 0.806102 GCTTACCGCTTGATCGCAGA 60.806 55.000 0.00 0.00 36.78 4.26
640 641 1.640428 CTTACCGCTTGATCGCAGAA 58.360 50.000 0.00 0.00 43.58 3.02
641 642 2.205074 CTTACCGCTTGATCGCAGAAT 58.795 47.619 0.00 0.00 43.58 2.40
642 643 1.570813 TACCGCTTGATCGCAGAATG 58.429 50.000 0.00 0.00 43.58 2.67
661 662 8.273780 CAGAATGCAGTAAATAGGATATTCCC 57.726 38.462 0.00 0.00 37.19 3.97
662 663 8.105829 CAGAATGCAGTAAATAGGATATTCCCT 58.894 37.037 0.00 0.00 37.19 4.20
663 664 8.673251 AGAATGCAGTAAATAGGATATTCCCTT 58.327 33.333 0.00 0.00 37.19 3.95
664 665 8.641498 AATGCAGTAAATAGGATATTCCCTTG 57.359 34.615 0.00 0.00 37.19 3.61
665 666 6.542821 TGCAGTAAATAGGATATTCCCTTGG 58.457 40.000 0.00 0.00 37.19 3.61
666 667 5.946377 GCAGTAAATAGGATATTCCCTTGGG 59.054 44.000 0.00 0.00 37.19 4.12
667 668 6.485171 CAGTAAATAGGATATTCCCTTGGGG 58.515 44.000 5.78 0.00 46.11 4.96
687 688 3.093278 CCGAACGGCTGAAGATGC 58.907 61.111 0.00 0.00 0.00 3.91
688 689 1.448540 CCGAACGGCTGAAGATGCT 60.449 57.895 0.00 0.00 0.00 3.79
689 690 1.021390 CCGAACGGCTGAAGATGCTT 61.021 55.000 0.00 0.00 0.00 3.91
690 691 1.640428 CGAACGGCTGAAGATGCTTA 58.360 50.000 0.00 0.00 0.00 3.09
691 692 1.999735 CGAACGGCTGAAGATGCTTAA 59.000 47.619 0.00 0.00 0.00 1.85
692 693 2.415168 CGAACGGCTGAAGATGCTTAAA 59.585 45.455 0.00 0.00 0.00 1.52
693 694 3.063997 CGAACGGCTGAAGATGCTTAAAT 59.936 43.478 0.00 0.00 0.00 1.40
694 695 4.346129 GAACGGCTGAAGATGCTTAAATG 58.654 43.478 0.00 0.00 0.00 2.32
695 696 2.684881 ACGGCTGAAGATGCTTAAATGG 59.315 45.455 0.00 0.00 0.00 3.16
696 697 2.033801 CGGCTGAAGATGCTTAAATGGG 59.966 50.000 0.00 0.00 0.00 4.00
697 698 2.223900 GGCTGAAGATGCTTAAATGGGC 60.224 50.000 0.00 0.00 0.00 5.36
698 699 2.223900 GCTGAAGATGCTTAAATGGGCC 60.224 50.000 0.00 0.00 0.00 5.80
699 700 2.023673 TGAAGATGCTTAAATGGGCCG 58.976 47.619 0.00 0.00 0.00 6.13
700 701 1.338020 GAAGATGCTTAAATGGGCCGG 59.662 52.381 0.00 0.00 0.00 6.13
701 702 0.468029 AGATGCTTAAATGGGCCGGG 60.468 55.000 2.18 0.00 0.00 5.73
702 703 2.087462 GATGCTTAAATGGGCCGGGC 62.087 60.000 22.00 22.00 0.00 6.13
713 714 3.451894 GCCGGGCCATTTCACCTG 61.452 66.667 8.12 0.00 0.00 4.00
714 715 3.451894 CCGGGCCATTTCACCTGC 61.452 66.667 4.39 0.00 0.00 4.85
715 716 3.451894 CGGGCCATTTCACCTGCC 61.452 66.667 4.39 0.00 43.26 4.85
717 718 2.283821 GGCCATTTCACCTGCCCA 60.284 61.111 0.00 0.00 37.94 5.36
718 719 1.686800 GGCCATTTCACCTGCCCAT 60.687 57.895 0.00 0.00 37.94 4.00
719 720 1.518774 GCCATTTCACCTGCCCATG 59.481 57.895 0.00 0.00 0.00 3.66
720 721 0.971959 GCCATTTCACCTGCCCATGA 60.972 55.000 0.00 0.00 0.00 3.07
721 722 0.819582 CCATTTCACCTGCCCATGAC 59.180 55.000 0.00 0.00 0.00 3.06
722 723 0.452987 CATTTCACCTGCCCATGACG 59.547 55.000 0.00 0.00 0.00 4.35
723 724 1.315257 ATTTCACCTGCCCATGACGC 61.315 55.000 0.00 0.00 0.00 5.19
724 725 2.689035 TTTCACCTGCCCATGACGCA 62.689 55.000 7.16 7.16 34.41 5.24
729 730 2.046988 TGCCCATGACGCAGAGTG 60.047 61.111 0.00 0.00 0.00 3.51
730 731 3.503363 GCCCATGACGCAGAGTGC 61.503 66.667 0.00 0.00 40.69 4.40
731 732 2.821366 CCCATGACGCAGAGTGCC 60.821 66.667 0.00 0.00 41.12 5.01
732 733 2.267006 CCATGACGCAGAGTGCCT 59.733 61.111 0.00 0.00 41.12 4.75
733 734 1.376424 CCATGACGCAGAGTGCCTT 60.376 57.895 0.00 0.00 41.12 4.35
773 774 0.738389 CTGCCGACCACACAAAAACT 59.262 50.000 0.00 0.00 0.00 2.66
798 806 2.041153 CACCCTTCCAAACAGCACC 58.959 57.895 0.00 0.00 0.00 5.01
893 901 4.275508 AGCCAGTGTGCACCCCAG 62.276 66.667 15.69 1.81 0.00 4.45
927 956 2.395690 CCAAGATTCGTGCGCGTC 59.604 61.111 20.50 10.94 39.49 5.19
991 1021 1.200948 GAGATTGCCTTTGTCACCAGC 59.799 52.381 0.00 0.00 0.00 4.85
1079 1122 0.609131 CCACCGCCATTTCCACTTCT 60.609 55.000 0.00 0.00 0.00 2.85
1082 1125 0.962356 CCGCCATTTCCACTTCTGCT 60.962 55.000 0.00 0.00 0.00 4.24
1088 1131 2.645838 TTTCCACTTCTGCTTCTGCT 57.354 45.000 0.00 0.00 40.48 4.24
1090 1133 2.175878 TCCACTTCTGCTTCTGCTTC 57.824 50.000 0.00 0.00 40.48 3.86
1256 1305 2.182030 CCGTCTTCGTCTCAGGCC 59.818 66.667 0.00 0.00 35.01 5.19
1435 1484 9.438291 CAATTCCGTCTTGTGTTTATATTCATC 57.562 33.333 0.00 0.00 0.00 2.92
1436 1485 8.731275 ATTCCGTCTTGTGTTTATATTCATCA 57.269 30.769 0.00 0.00 0.00 3.07
1437 1486 8.731275 TTCCGTCTTGTGTTTATATTCATCAT 57.269 30.769 0.00 0.00 0.00 2.45
1438 1487 9.825109 TTCCGTCTTGTGTTTATATTCATCATA 57.175 29.630 0.00 0.00 0.00 2.15
1439 1488 9.996554 TCCGTCTTGTGTTTATATTCATCATAT 57.003 29.630 0.00 0.00 32.38 1.78
1467 1517 3.056536 CAGCACTAAAGCCAGTCTGTCTA 60.057 47.826 0.00 0.00 34.23 2.59
1567 1619 8.584063 AAGACTGTAAAACCAAAAACCTTCTA 57.416 30.769 0.00 0.00 0.00 2.10
1568 1620 8.762481 AGACTGTAAAACCAAAAACCTTCTAT 57.238 30.769 0.00 0.00 0.00 1.98
1581 1633 9.143631 CAAAAACCTTCTATGGAATTGCTAAAG 57.856 33.333 0.00 0.00 0.00 1.85
1749 1801 5.852282 AAATAACACCATATGCAACCCTC 57.148 39.130 0.00 0.00 0.00 4.30
1855 1916 7.383102 AGACTATTTCTGTCGAAATGCAAAT 57.617 32.000 9.80 0.00 46.45 2.32
1887 1948 6.403866 ACTGTGGATCTTTGTTGCATTTTA 57.596 33.333 0.00 0.00 0.00 1.52
1892 1954 8.772705 TGTGGATCTTTGTTGCATTTTAAATTC 58.227 29.630 0.00 0.00 0.00 2.17
2142 2214 6.770785 GGACATGGCATAAATCCTGTACTTAA 59.229 38.462 14.35 0.00 0.00 1.85
2181 2253 9.412460 TCATGAGAATGCTTAAACCTGATATTT 57.588 29.630 0.00 0.00 0.00 1.40
2352 2425 1.342074 CTTGCCCCGAGGATAGATCA 58.658 55.000 0.00 0.00 33.47 2.92
2359 2432 2.480932 CCCGAGGATAGATCATCATGCG 60.481 54.545 5.16 2.07 37.45 4.73
2515 2588 5.578157 ATGACTTTGGTAGTAACCCTGTT 57.422 39.130 0.00 0.00 46.16 3.16
2634 2888 0.595095 CCTTGTCTTTGTGCTGCCTC 59.405 55.000 0.00 0.00 0.00 4.70
2635 2889 1.311859 CTTGTCTTTGTGCTGCCTCA 58.688 50.000 0.00 0.00 0.00 3.86
2636 2890 1.884579 CTTGTCTTTGTGCTGCCTCAT 59.115 47.619 0.00 0.00 0.00 2.90
2647 2901 2.022195 GCTGCCTCATTGTCATCACAT 58.978 47.619 0.00 0.00 30.55 3.21
3100 3356 3.023119 TGCAAACCACACTCACTTTGAT 58.977 40.909 0.00 0.00 0.00 2.57
3140 3396 6.935167 TGCTGATATTCTTGTGTAGTCTTGA 58.065 36.000 0.00 0.00 0.00 3.02
3226 3482 4.755546 ACGTGTTTGTGCGTGTTG 57.244 50.000 0.00 0.00 40.03 3.33
3227 3483 1.135731 ACGTGTTTGTGCGTGTTGG 59.864 52.632 0.00 0.00 40.03 3.77
3228 3484 1.135731 CGTGTTTGTGCGTGTTGGT 59.864 52.632 0.00 0.00 0.00 3.67
3229 3485 1.131037 CGTGTTTGTGCGTGTTGGTG 61.131 55.000 0.00 0.00 0.00 4.17
3230 3486 1.153939 TGTTTGTGCGTGTTGGTGC 60.154 52.632 0.00 0.00 0.00 5.01
3270 3528 3.747976 GGGCGTGGGCATGTGTTC 61.748 66.667 0.00 0.00 42.47 3.18
3310 3568 3.591527 TCTCAAATTAGGGTGTGTGGGAT 59.408 43.478 0.00 0.00 0.00 3.85
3318 3576 2.239654 AGGGTGTGTGGGATCTTACATG 59.760 50.000 6.00 0.00 0.00 3.21
3355 3613 9.634163 ATTAAAACTAATTTTCGTTAGGCTTGG 57.366 29.630 0.00 0.00 38.91 3.61
3412 3670 7.054124 TGAATACTCTTATTTCCCACCATGAC 58.946 38.462 0.00 0.00 0.00 3.06
3444 3702 4.092091 GGAAGCATGTCTTAAGTTGACTCG 59.908 45.833 1.63 0.00 34.56 4.18
3605 3864 2.892852 TGGAGGTCAAATTGGCTGAAAG 59.107 45.455 0.00 0.00 0.00 2.62
3833 4092 9.796180 AATACGGAGATTAGAGAGTAGTATTGT 57.204 33.333 0.00 0.00 32.96 2.71
3912 4171 7.360607 GGTGAAATGAATGATTTGCAGGAAAAG 60.361 37.037 0.00 0.00 34.18 2.27
3934 4193 4.589374 AGTTAAGTCTACTCAGCCAACAGT 59.411 41.667 0.00 0.00 0.00 3.55
3957 4216 3.609853 TGATAGCAAGGAGAAACGCATT 58.390 40.909 0.00 0.00 0.00 3.56
4248 4514 4.646945 TCTTCTGAGATAAGAGCGAACCAT 59.353 41.667 0.00 0.00 0.00 3.55
4404 4670 2.741759 TGCTAGACGATGAAGTTGCA 57.258 45.000 0.00 0.00 0.00 4.08
4477 4743 0.034337 TTCCCGAACTGAGGTTTCCG 59.966 55.000 0.00 0.00 35.58 4.30
4486 4752 2.171870 ACTGAGGTTTCCGAACTTTCCA 59.828 45.455 0.00 0.00 36.03 3.53
4526 4792 2.808906 AGGACAAATAAGGACCTGGC 57.191 50.000 0.00 0.00 0.00 4.85
4552 4818 4.281435 TGCAGATTTCAAATCTCCAAAGCA 59.719 37.500 14.89 14.89 0.00 3.91
4669 4935 5.644188 AGATGATTCAAAAGGGTCAGGAAA 58.356 37.500 0.00 0.00 0.00 3.13
4693 4959 6.613153 AACTTGAAGCTACCTCTAATGAGT 57.387 37.500 0.00 0.00 38.61 3.41
4696 4962 6.876257 ACTTGAAGCTACCTCTAATGAGTTTG 59.124 38.462 0.00 0.00 38.61 2.93
4719 4985 3.112709 GCCGTGGAAGCTCGTGAC 61.113 66.667 0.00 0.00 0.00 3.67
4797 5063 5.163673 GGAGCTTGTTGATGAAAGGAGAATC 60.164 44.000 0.00 0.00 0.00 2.52
4803 5069 3.861840 TGATGAAAGGAGAATCGTGACC 58.138 45.455 0.00 0.00 34.37 4.02
4908 5174 5.591877 GGATGAAGCAACCAGATCACTAAAT 59.408 40.000 0.00 0.00 0.00 1.40
4969 5235 5.946942 AGAGAGCACTCATTCCAAGAATA 57.053 39.130 13.86 0.00 44.79 1.75
5287 5553 0.329596 AGAGACCAGCAATGTTCCCC 59.670 55.000 0.00 0.00 0.00 4.81
5361 5627 0.824759 ATGGTACTCAGAAGACCGGC 59.175 55.000 0.00 0.00 35.91 6.13
5418 5684 1.208706 AGGCTAGGAGAGGAAAAGGC 58.791 55.000 0.00 0.00 0.00 4.35
5423 5689 1.377333 GGAGAGGAAAAGGCGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
5425 5691 3.062466 GAGGAAAAGGCGGTGGGC 61.062 66.667 0.00 0.00 42.51 5.36
5438 5704 1.069090 GTGGGCCGCGATGAATCTA 59.931 57.895 8.23 0.00 0.00 1.98
5528 5794 6.553953 TTTTGATACTACCATCCTGTAGCA 57.446 37.500 0.00 0.00 41.57 3.49
5530 5796 5.728637 TGATACTACCATCCTGTAGCATG 57.271 43.478 0.00 0.00 41.57 4.06
5534 5800 0.839946 ACCATCCTGTAGCATGGGTC 59.160 55.000 6.77 0.00 43.59 4.46
5535 5801 0.839277 CCATCCTGTAGCATGGGTCA 59.161 55.000 0.00 0.00 36.62 4.02
5613 6058 1.401552 CCTGTAATTCACGTGCCATGG 59.598 52.381 11.67 7.63 0.00 3.66
5630 6075 4.021192 GCCATGGGTTTTGAGAATTTGAGA 60.021 41.667 15.13 0.00 0.00 3.27
5637 6082 7.559897 TGGGTTTTGAGAATTTGAGAGTTTACT 59.440 33.333 0.00 0.00 0.00 2.24
5836 6290 7.814107 CCTATACTTTGTGCATCACATGTTTTT 59.186 33.333 0.00 0.00 44.16 1.94
5850 6304 5.819901 CACATGTTTTTGGTTAACCCACATT 59.180 36.000 21.97 11.53 45.19 2.71
6030 6489 5.048713 CGCCAAATTTCAAGGGATAGATACC 60.049 44.000 0.00 0.00 0.00 2.73
6032 6491 7.231467 GCCAAATTTCAAGGGATAGATACCTA 58.769 38.462 0.00 0.00 41.42 3.08
6110 6571 0.762418 TGGACATGGTTCCGTTCTGT 59.238 50.000 0.00 0.00 38.69 3.41
6153 6615 8.571336 CAACAGATAATGAAACTTTGGAAGAGT 58.429 33.333 0.00 0.00 0.00 3.24
6154 6616 9.793259 AACAGATAATGAAACTTTGGAAGAGTA 57.207 29.630 0.00 0.00 0.00 2.59
6306 6774 2.358737 GTCACAAGTCAGGCCCCG 60.359 66.667 0.00 0.00 0.00 5.73
6361 6829 3.870419 ACATGAAACTGCAACGCATTTTT 59.130 34.783 0.00 1.54 40.50 1.94
6390 6858 6.609212 TCAGTGGCAAATATTATGGGCTTAAA 59.391 34.615 0.00 0.00 0.00 1.52
6450 6918 0.690762 TCCCAACCTCAGGCAGTTAC 59.309 55.000 0.00 0.00 0.00 2.50
6619 7092 1.535437 GCACTAGCATTGGAAGCATGC 60.535 52.381 10.51 10.51 46.39 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.323985 CCACTTCAAATTGTTTAGGATTTTTCA 57.676 29.630 0.00 0.00 0.00 2.69
64 65 8.773645 CCCACTTCAAATTGTTTAGGATTTTTC 58.226 33.333 0.00 0.00 0.00 2.29
65 66 8.490311 TCCCACTTCAAATTGTTTAGGATTTTT 58.510 29.630 0.00 0.00 0.00 1.94
66 67 8.028652 TCCCACTTCAAATTGTTTAGGATTTT 57.971 30.769 0.00 0.00 0.00 1.82
67 68 7.610580 TCCCACTTCAAATTGTTTAGGATTT 57.389 32.000 0.00 0.00 0.00 2.17
68 69 7.070571 TGTTCCCACTTCAAATTGTTTAGGATT 59.929 33.333 0.00 0.00 0.00 3.01
69 70 6.553100 TGTTCCCACTTCAAATTGTTTAGGAT 59.447 34.615 0.00 0.00 0.00 3.24
70 71 5.894393 TGTTCCCACTTCAAATTGTTTAGGA 59.106 36.000 0.00 0.00 0.00 2.94
71 72 6.155475 TGTTCCCACTTCAAATTGTTTAGG 57.845 37.500 0.00 0.00 0.00 2.69
72 73 8.661352 ATTTGTTCCCACTTCAAATTGTTTAG 57.339 30.769 0.00 0.00 38.19 1.85
73 74 9.454859 AAATTTGTTCCCACTTCAAATTGTTTA 57.545 25.926 13.28 0.00 45.07 2.01
74 75 7.936496 AATTTGTTCCCACTTCAAATTGTTT 57.064 28.000 12.22 0.00 44.53 2.83
75 76 7.936496 AAATTTGTTCCCACTTCAAATTGTT 57.064 28.000 13.28 0.52 45.07 2.83
76 77 7.609532 TCAAAATTTGTTCCCACTTCAAATTGT 59.390 29.630 13.28 7.39 45.07 2.71
77 78 7.983307 TCAAAATTTGTTCCCACTTCAAATTG 58.017 30.769 13.28 6.44 45.07 2.32
78 79 8.572855 TTCAAAATTTGTTCCCACTTCAAATT 57.427 26.923 5.56 8.60 46.59 1.82
79 80 8.750515 ATTCAAAATTTGTTCCCACTTCAAAT 57.249 26.923 5.56 0.00 41.51 2.32
80 81 9.844257 ATATTCAAAATTTGTTCCCACTTCAAA 57.156 25.926 5.56 0.00 35.92 2.69
81 82 9.270640 CATATTCAAAATTTGTTCCCACTTCAA 57.729 29.630 5.56 0.00 0.00 2.69
82 83 8.428063 ACATATTCAAAATTTGTTCCCACTTCA 58.572 29.630 5.56 0.00 0.00 3.02
83 84 8.831715 ACATATTCAAAATTTGTTCCCACTTC 57.168 30.769 5.56 0.00 0.00 3.01
141 142 9.971922 TGTTTCCAAAAATTGTTCACAAAATTT 57.028 22.222 0.00 0.00 39.55 1.82
142 143 9.623350 CTGTTTCCAAAAATTGTTCACAAAATT 57.377 25.926 0.00 0.00 39.55 1.82
143 144 8.242739 CCTGTTTCCAAAAATTGTTCACAAAAT 58.757 29.630 0.00 0.00 39.55 1.82
144 145 7.308830 CCCTGTTTCCAAAAATTGTTCACAAAA 60.309 33.333 0.00 0.00 39.55 2.44
145 146 6.150140 CCCTGTTTCCAAAAATTGTTCACAAA 59.850 34.615 0.00 0.00 39.55 2.83
146 147 5.645497 CCCTGTTTCCAAAAATTGTTCACAA 59.355 36.000 0.00 0.00 40.51 3.33
147 148 5.046304 TCCCTGTTTCCAAAAATTGTTCACA 60.046 36.000 0.00 0.00 0.00 3.58
148 149 5.423886 TCCCTGTTTCCAAAAATTGTTCAC 58.576 37.500 0.00 0.00 0.00 3.18
149 150 5.683876 TCCCTGTTTCCAAAAATTGTTCA 57.316 34.783 0.00 0.00 0.00 3.18
150 151 5.877564 TGTTCCCTGTTTCCAAAAATTGTTC 59.122 36.000 0.00 0.00 0.00 3.18
151 152 5.810095 TGTTCCCTGTTTCCAAAAATTGTT 58.190 33.333 0.00 0.00 0.00 2.83
154 155 7.953005 AAAATGTTCCCTGTTTCCAAAAATT 57.047 28.000 0.00 0.00 0.00 1.82
179 180 9.209175 CATTTTAAATAATGAACGGGGTTTCAA 57.791 29.630 0.00 0.00 38.95 2.69
180 181 8.368668 ACATTTTAAATAATGAACGGGGTTTCA 58.631 29.630 6.84 0.00 39.79 2.69
181 182 8.766000 ACATTTTAAATAATGAACGGGGTTTC 57.234 30.769 6.84 0.00 38.56 2.78
182 183 9.642327 GTACATTTTAAATAATGAACGGGGTTT 57.358 29.630 6.84 0.00 38.56 3.27
183 184 9.027202 AGTACATTTTAAATAATGAACGGGGTT 57.973 29.630 6.84 0.00 38.56 4.11
184 185 8.584063 AGTACATTTTAAATAATGAACGGGGT 57.416 30.769 6.84 0.00 38.56 4.95
207 208 9.516314 CGGAATGTTTCTTTTCTTTTCTTTAGT 57.484 29.630 0.00 0.00 0.00 2.24
208 209 8.480066 GCGGAATGTTTCTTTTCTTTTCTTTAG 58.520 33.333 0.00 0.00 0.00 1.85
209 210 7.166804 CGCGGAATGTTTCTTTTCTTTTCTTTA 59.833 33.333 0.00 0.00 0.00 1.85
210 211 6.019881 CGCGGAATGTTTCTTTTCTTTTCTTT 60.020 34.615 0.00 0.00 0.00 2.52
211 212 5.458779 CGCGGAATGTTTCTTTTCTTTTCTT 59.541 36.000 0.00 0.00 0.00 2.52
212 213 4.976116 CGCGGAATGTTTCTTTTCTTTTCT 59.024 37.500 0.00 0.00 0.00 2.52
213 214 4.375005 GCGCGGAATGTTTCTTTTCTTTTC 60.375 41.667 8.83 0.00 0.00 2.29
214 215 3.489416 GCGCGGAATGTTTCTTTTCTTTT 59.511 39.130 8.83 0.00 0.00 2.27
215 216 3.049912 GCGCGGAATGTTTCTTTTCTTT 58.950 40.909 8.83 0.00 0.00 2.52
216 217 2.034053 TGCGCGGAATGTTTCTTTTCTT 59.966 40.909 8.83 0.00 0.00 2.52
217 218 1.606668 TGCGCGGAATGTTTCTTTTCT 59.393 42.857 8.83 0.00 0.00 2.52
218 219 2.044888 TGCGCGGAATGTTTCTTTTC 57.955 45.000 8.83 0.00 0.00 2.29
219 220 2.124122 GTTGCGCGGAATGTTTCTTTT 58.876 42.857 18.13 0.00 0.00 2.27
220 221 1.336755 AGTTGCGCGGAATGTTTCTTT 59.663 42.857 18.13 0.00 0.00 2.52
221 222 0.951558 AGTTGCGCGGAATGTTTCTT 59.048 45.000 18.13 0.00 0.00 2.52
222 223 0.951558 AAGTTGCGCGGAATGTTTCT 59.048 45.000 18.13 5.36 0.00 2.52
223 224 1.766069 AAAGTTGCGCGGAATGTTTC 58.234 45.000 18.13 2.64 0.00 2.78
224 225 1.857837 CAAAAGTTGCGCGGAATGTTT 59.142 42.857 18.13 16.16 0.00 2.83
225 226 1.066303 TCAAAAGTTGCGCGGAATGTT 59.934 42.857 18.13 10.71 0.00 2.71
226 227 0.665835 TCAAAAGTTGCGCGGAATGT 59.334 45.000 18.13 4.10 0.00 2.71
227 228 1.981254 ATCAAAAGTTGCGCGGAATG 58.019 45.000 18.13 10.98 0.00 2.67
228 229 3.840890 TTATCAAAAGTTGCGCGGAAT 57.159 38.095 18.13 0.00 0.00 3.01
229 230 3.243101 TGTTTATCAAAAGTTGCGCGGAA 60.243 39.130 9.68 9.68 0.00 4.30
230 231 2.290916 TGTTTATCAAAAGTTGCGCGGA 59.709 40.909 8.83 0.00 0.00 5.54
231 232 2.656085 TGTTTATCAAAAGTTGCGCGG 58.344 42.857 8.83 0.00 0.00 6.46
232 233 3.550561 TCTGTTTATCAAAAGTTGCGCG 58.449 40.909 0.00 0.00 0.00 6.86
233 234 5.231147 TGTTTCTGTTTATCAAAAGTTGCGC 59.769 36.000 0.00 0.00 0.00 6.09
234 235 6.804534 TGTTTCTGTTTATCAAAAGTTGCG 57.195 33.333 0.00 0.00 0.00 4.85
235 236 9.986833 AAAATGTTTCTGTTTATCAAAAGTTGC 57.013 25.926 0.00 0.00 0.00 4.17
272 273 8.901748 ATGTTCACATTTCTAAACGAAAATTCG 58.098 29.630 13.56 13.56 44.25 3.34
302 303 9.458374 GTTTTCGAAAACTATTCCTGAATTCAA 57.542 29.630 35.26 4.57 43.68 2.69
303 304 8.625651 TGTTTTCGAAAACTATTCCTGAATTCA 58.374 29.630 38.87 20.50 46.37 2.57
304 305 8.902735 GTGTTTTCGAAAACTATTCCTGAATTC 58.097 33.333 38.87 18.62 46.37 2.17
305 306 8.410141 TGTGTTTTCGAAAACTATTCCTGAATT 58.590 29.630 38.87 0.00 46.37 2.17
306 307 7.860872 GTGTGTTTTCGAAAACTATTCCTGAAT 59.139 33.333 38.87 0.00 46.37 2.57
307 308 7.190871 GTGTGTTTTCGAAAACTATTCCTGAA 58.809 34.615 38.87 21.97 46.37 3.02
308 309 6.238538 GGTGTGTTTTCGAAAACTATTCCTGA 60.239 38.462 38.87 22.55 46.37 3.86
309 310 5.912955 GGTGTGTTTTCGAAAACTATTCCTG 59.087 40.000 38.87 0.00 46.37 3.86
310 311 5.009310 GGGTGTGTTTTCGAAAACTATTCCT 59.991 40.000 38.87 0.00 46.37 3.36
311 312 5.217393 GGGTGTGTTTTCGAAAACTATTCC 58.783 41.667 38.87 32.69 46.37 3.01
312 313 5.823353 TGGGTGTGTTTTCGAAAACTATTC 58.177 37.500 38.87 28.66 46.37 1.75
313 314 5.838531 TGGGTGTGTTTTCGAAAACTATT 57.161 34.783 38.87 0.00 46.37 1.73
314 315 6.399639 AATGGGTGTGTTTTCGAAAACTAT 57.600 33.333 38.87 24.94 46.37 2.12
315 316 5.838531 AATGGGTGTGTTTTCGAAAACTA 57.161 34.783 38.87 29.33 46.37 2.24
316 317 4.729227 AATGGGTGTGTTTTCGAAAACT 57.271 36.364 38.87 23.14 46.37 2.66
317 318 5.788055 AAAATGGGTGTGTTTTCGAAAAC 57.212 34.783 35.69 35.69 46.40 2.43
465 466 9.996554 TCCTTCTTTCTTTGTTCTTTTCTTTTT 57.003 25.926 0.00 0.00 0.00 1.94
466 467 9.996554 TTCCTTCTTTCTTTGTTCTTTTCTTTT 57.003 25.926 0.00 0.00 0.00 2.27
467 468 9.996554 TTTCCTTCTTTCTTTGTTCTTTTCTTT 57.003 25.926 0.00 0.00 0.00 2.52
468 469 9.996554 TTTTCCTTCTTTCTTTGTTCTTTTCTT 57.003 25.926 0.00 0.00 0.00 2.52
469 470 9.996554 TTTTTCCTTCTTTCTTTGTTCTTTTCT 57.003 25.926 0.00 0.00 0.00 2.52
493 494 5.346551 CGAACCGGTTTTTCTGTTTCTTTTT 59.653 36.000 23.22 0.00 0.00 1.94
494 495 4.860352 CGAACCGGTTTTTCTGTTTCTTTT 59.140 37.500 23.22 0.00 0.00 2.27
495 496 4.417506 CGAACCGGTTTTTCTGTTTCTTT 58.582 39.130 23.22 0.00 0.00 2.52
496 497 3.181494 CCGAACCGGTTTTTCTGTTTCTT 60.181 43.478 23.22 0.00 42.73 2.52
497 498 2.356695 CCGAACCGGTTTTTCTGTTTCT 59.643 45.455 23.22 0.00 42.73 2.52
498 499 2.542205 CCCGAACCGGTTTTTCTGTTTC 60.542 50.000 23.22 3.97 46.80 2.78
499 500 1.406180 CCCGAACCGGTTTTTCTGTTT 59.594 47.619 23.22 0.00 46.80 2.83
500 501 1.026584 CCCGAACCGGTTTTTCTGTT 58.973 50.000 23.22 0.00 46.80 3.16
501 502 0.820482 CCCCGAACCGGTTTTTCTGT 60.820 55.000 23.22 0.00 46.80 3.41
502 503 0.535553 TCCCCGAACCGGTTTTTCTG 60.536 55.000 23.22 9.68 46.80 3.02
503 504 0.183252 TTCCCCGAACCGGTTTTTCT 59.817 50.000 23.22 0.00 46.80 2.52
504 505 0.311790 GTTCCCCGAACCGGTTTTTC 59.688 55.000 23.22 8.13 46.80 2.29
505 506 2.417978 GTTCCCCGAACCGGTTTTT 58.582 52.632 23.22 0.00 46.80 1.94
506 507 4.162592 GTTCCCCGAACCGGTTTT 57.837 55.556 23.22 0.00 46.80 2.43
513 514 2.830321 TCTTCTAGAAGGTTCCCCGAAC 59.170 50.000 28.09 0.00 41.32 3.95
514 515 3.179902 TCTTCTAGAAGGTTCCCCGAA 57.820 47.619 28.09 6.64 38.88 4.30
515 516 2.913603 TCTTCTAGAAGGTTCCCCGA 57.086 50.000 28.09 7.56 38.88 5.14
521 522 6.610830 TGTTTTGGGAATCTTCTAGAAGGTT 58.389 36.000 27.34 27.34 43.87 3.50
522 523 6.200878 TGTTTTGGGAATCTTCTAGAAGGT 57.799 37.500 28.09 21.31 38.88 3.50
523 524 7.524717 TTTGTTTTGGGAATCTTCTAGAAGG 57.475 36.000 28.09 12.77 38.88 3.46
550 551 2.101415 GCAGAGTTTCCCAGCTGTTTTT 59.899 45.455 13.81 0.00 0.00 1.94
551 552 1.683385 GCAGAGTTTCCCAGCTGTTTT 59.317 47.619 13.81 0.00 0.00 2.43
552 553 1.322442 GCAGAGTTTCCCAGCTGTTT 58.678 50.000 13.81 0.00 0.00 2.83
553 554 0.183492 TGCAGAGTTTCCCAGCTGTT 59.817 50.000 13.81 0.00 0.00 3.16
554 555 0.183492 TTGCAGAGTTTCCCAGCTGT 59.817 50.000 13.81 0.00 0.00 4.40
555 556 0.879765 CTTGCAGAGTTTCCCAGCTG 59.120 55.000 6.78 6.78 0.00 4.24
556 557 0.251077 CCTTGCAGAGTTTCCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
557 558 0.538287 ACCTTGCAGAGTTTCCCAGC 60.538 55.000 0.00 0.00 0.00 4.85
558 559 2.427506 GTACCTTGCAGAGTTTCCCAG 58.572 52.381 0.00 0.00 0.00 4.45
559 560 1.073284 GGTACCTTGCAGAGTTTCCCA 59.927 52.381 4.06 0.00 0.00 4.37
560 561 1.822506 GGTACCTTGCAGAGTTTCCC 58.177 55.000 4.06 0.00 0.00 3.97
575 576 7.748691 TTATAGTGTTTCCAGTTTTGGGTAC 57.251 36.000 0.00 0.00 45.10 3.34
576 577 9.452287 GTATTATAGTGTTTCCAGTTTTGGGTA 57.548 33.333 0.00 0.00 45.10 3.69
577 578 7.120138 CGTATTATAGTGTTTCCAGTTTTGGGT 59.880 37.037 0.00 0.00 45.10 4.51
578 579 7.120138 ACGTATTATAGTGTTTCCAGTTTTGGG 59.880 37.037 0.00 0.00 45.10 4.12
579 580 8.036273 ACGTATTATAGTGTTTCCAGTTTTGG 57.964 34.615 0.00 0.00 46.49 3.28
584 585 9.321562 CCATTAACGTATTATAGTGTTTCCAGT 57.678 33.333 0.00 0.00 0.00 4.00
585 586 8.770828 CCCATTAACGTATTATAGTGTTTCCAG 58.229 37.037 0.00 0.00 0.00 3.86
586 587 7.227116 GCCCATTAACGTATTATAGTGTTTCCA 59.773 37.037 0.00 0.00 0.00 3.53
587 588 7.443272 AGCCCATTAACGTATTATAGTGTTTCC 59.557 37.037 0.00 0.00 0.00 3.13
588 589 8.374327 AGCCCATTAACGTATTATAGTGTTTC 57.626 34.615 0.00 0.00 0.00 2.78
589 590 8.617809 CAAGCCCATTAACGTATTATAGTGTTT 58.382 33.333 0.00 0.00 0.00 2.83
590 591 7.255001 GCAAGCCCATTAACGTATTATAGTGTT 60.255 37.037 0.00 0.00 0.00 3.32
591 592 6.204108 GCAAGCCCATTAACGTATTATAGTGT 59.796 38.462 0.00 0.00 0.00 3.55
592 593 6.348213 GGCAAGCCCATTAACGTATTATAGTG 60.348 42.308 0.00 0.00 0.00 2.74
593 594 5.704053 GGCAAGCCCATTAACGTATTATAGT 59.296 40.000 0.00 0.00 0.00 2.12
594 595 6.178239 GGCAAGCCCATTAACGTATTATAG 57.822 41.667 0.00 0.00 0.00 1.31
621 622 1.640428 TTCTGCGATCAAGCGGTAAG 58.360 50.000 0.00 0.00 43.62 2.34
622 623 1.933181 CATTCTGCGATCAAGCGGTAA 59.067 47.619 0.00 0.00 43.62 2.85
623 624 1.570813 CATTCTGCGATCAAGCGGTA 58.429 50.000 0.00 0.00 43.62 4.02
624 625 1.709147 GCATTCTGCGATCAAGCGGT 61.709 55.000 0.00 0.00 43.62 5.68
625 626 1.010350 GCATTCTGCGATCAAGCGG 60.010 57.895 0.00 0.00 44.50 5.52
626 627 4.584327 GCATTCTGCGATCAAGCG 57.416 55.556 0.00 0.00 40.67 4.68
634 635 7.413438 GGAATATCCTATTTACTGCATTCTGCG 60.413 40.741 0.00 0.00 38.93 5.18
635 636 7.148171 GGGAATATCCTATTTACTGCATTCTGC 60.148 40.741 0.00 0.00 39.34 4.26
636 637 8.105829 AGGGAATATCCTATTTACTGCATTCTG 58.894 37.037 0.00 0.00 36.57 3.02
637 638 8.224620 AGGGAATATCCTATTTACTGCATTCT 57.775 34.615 0.00 0.00 36.57 2.40
638 639 8.734386 CAAGGGAATATCCTATTTACTGCATTC 58.266 37.037 0.00 0.00 36.57 2.67
639 640 7.671398 CCAAGGGAATATCCTATTTACTGCATT 59.329 37.037 0.00 0.00 36.57 3.56
640 641 7.177878 CCAAGGGAATATCCTATTTACTGCAT 58.822 38.462 0.00 0.00 36.57 3.96
641 642 6.467194 CCCAAGGGAATATCCTATTTACTGCA 60.467 42.308 0.00 0.00 36.57 4.41
642 643 5.946377 CCCAAGGGAATATCCTATTTACTGC 59.054 44.000 0.00 0.00 36.57 4.40
670 671 1.021390 AAGCATCTTCAGCCGTTCGG 61.021 55.000 6.90 6.90 0.00 4.30
671 672 1.640428 TAAGCATCTTCAGCCGTTCG 58.360 50.000 0.00 0.00 0.00 3.95
672 673 4.346129 CATTTAAGCATCTTCAGCCGTTC 58.654 43.478 0.00 0.00 0.00 3.95
673 674 3.129287 CCATTTAAGCATCTTCAGCCGTT 59.871 43.478 0.00 0.00 0.00 4.44
674 675 2.684881 CCATTTAAGCATCTTCAGCCGT 59.315 45.455 0.00 0.00 0.00 5.68
675 676 2.033801 CCCATTTAAGCATCTTCAGCCG 59.966 50.000 0.00 0.00 0.00 5.52
676 677 2.223900 GCCCATTTAAGCATCTTCAGCC 60.224 50.000 0.00 0.00 0.00 4.85
677 678 2.223900 GGCCCATTTAAGCATCTTCAGC 60.224 50.000 0.00 0.00 0.00 4.26
678 679 2.033801 CGGCCCATTTAAGCATCTTCAG 59.966 50.000 0.00 0.00 0.00 3.02
679 680 2.023673 CGGCCCATTTAAGCATCTTCA 58.976 47.619 0.00 0.00 0.00 3.02
680 681 1.338020 CCGGCCCATTTAAGCATCTTC 59.662 52.381 0.00 0.00 0.00 2.87
681 682 1.402787 CCGGCCCATTTAAGCATCTT 58.597 50.000 0.00 0.00 0.00 2.40
682 683 0.468029 CCCGGCCCATTTAAGCATCT 60.468 55.000 0.00 0.00 0.00 2.90
683 684 2.041153 CCCGGCCCATTTAAGCATC 58.959 57.895 0.00 0.00 0.00 3.91
684 685 2.133641 GCCCGGCCCATTTAAGCAT 61.134 57.895 0.00 0.00 0.00 3.79
685 686 2.757917 GCCCGGCCCATTTAAGCA 60.758 61.111 0.00 0.00 0.00 3.91
686 687 3.536917 GGCCCGGCCCATTTAAGC 61.537 66.667 18.83 0.00 44.06 3.09
696 697 3.451894 CAGGTGAAATGGCCCGGC 61.452 66.667 0.00 0.00 0.00 6.13
697 698 3.451894 GCAGGTGAAATGGCCCGG 61.452 66.667 0.00 0.00 0.00 5.73
698 699 3.451894 GGCAGGTGAAATGGCCCG 61.452 66.667 0.00 0.00 40.55 6.13
701 702 0.971959 TCATGGGCAGGTGAAATGGC 60.972 55.000 0.00 0.00 42.19 4.40
702 703 0.819582 GTCATGGGCAGGTGAAATGG 59.180 55.000 0.00 0.00 0.00 3.16
703 704 0.452987 CGTCATGGGCAGGTGAAATG 59.547 55.000 0.00 0.00 0.00 2.32
704 705 1.315257 GCGTCATGGGCAGGTGAAAT 61.315 55.000 5.01 0.00 0.00 2.17
705 706 1.971167 GCGTCATGGGCAGGTGAAA 60.971 57.895 5.01 0.00 0.00 2.69
706 707 2.359850 GCGTCATGGGCAGGTGAA 60.360 61.111 5.01 0.00 0.00 3.18
707 708 3.635191 TGCGTCATGGGCAGGTGA 61.635 61.111 8.07 0.00 35.04 4.02
712 713 2.046988 CACTCTGCGTCATGGGCA 60.047 61.111 11.10 11.10 38.92 5.36
713 714 3.503363 GCACTCTGCGTCATGGGC 61.503 66.667 0.00 0.00 31.71 5.36
714 715 2.809861 AAGGCACTCTGCGTCATGGG 62.810 60.000 0.00 0.00 46.21 4.00
715 716 0.108186 TAAGGCACTCTGCGTCATGG 60.108 55.000 0.00 0.00 46.21 3.66
716 717 1.725641 TTAAGGCACTCTGCGTCATG 58.274 50.000 0.00 0.00 46.21 3.07
717 718 2.472695 TTTAAGGCACTCTGCGTCAT 57.527 45.000 0.00 0.00 46.21 3.06
718 719 2.472695 ATTTAAGGCACTCTGCGTCA 57.527 45.000 0.00 0.00 46.21 4.35
719 720 2.159517 CCAATTTAAGGCACTCTGCGTC 60.160 50.000 0.00 0.00 46.21 5.19
720 721 1.812571 CCAATTTAAGGCACTCTGCGT 59.187 47.619 0.00 0.00 46.21 5.24
721 722 2.083774 TCCAATTTAAGGCACTCTGCG 58.916 47.619 0.00 0.00 46.21 5.18
722 723 4.519540 TTTCCAATTTAAGGCACTCTGC 57.480 40.909 0.00 0.00 38.49 4.26
723 724 6.405842 GGGTATTTCCAATTTAAGGCACTCTG 60.406 42.308 0.00 0.00 35.82 3.35
724 725 5.656859 GGGTATTTCCAATTTAAGGCACTCT 59.343 40.000 0.00 0.00 35.82 3.24
725 726 5.163447 GGGGTATTTCCAATTTAAGGCACTC 60.163 44.000 0.00 0.00 35.82 3.51
726 727 4.714802 GGGGTATTTCCAATTTAAGGCACT 59.285 41.667 0.00 0.00 38.22 4.40
727 728 4.141801 GGGGGTATTTCCAATTTAAGGCAC 60.142 45.833 0.00 0.00 38.11 5.01
728 729 4.034410 GGGGGTATTTCCAATTTAAGGCA 58.966 43.478 0.00 0.00 38.11 4.75
729 730 4.034410 TGGGGGTATTTCCAATTTAAGGC 58.966 43.478 0.00 0.00 38.11 4.35
730 731 5.306937 GGATGGGGGTATTTCCAATTTAAGG 59.693 44.000 0.00 0.00 36.54 2.69
731 732 6.041979 CAGGATGGGGGTATTTCCAATTTAAG 59.958 42.308 0.00 0.00 36.54 1.85
732 733 5.902431 CAGGATGGGGGTATTTCCAATTTAA 59.098 40.000 0.00 0.00 36.54 1.52
733 734 5.463154 CAGGATGGGGGTATTTCCAATTTA 58.537 41.667 0.00 0.00 36.54 1.40
773 774 2.150719 TTTGGAAGGGTGCCTCGGA 61.151 57.895 0.00 0.00 30.89 4.55
798 806 1.370414 CTTTGCGCGGGTTCTGTTG 60.370 57.895 8.83 0.00 0.00 3.33
820 828 0.815615 CGGATTTACCCTCTGGCTGC 60.816 60.000 0.00 0.00 34.64 5.25
825 833 2.159085 GGAGTGACGGATTTACCCTCTG 60.159 54.545 0.00 0.00 34.64 3.35
826 834 2.108970 GGAGTGACGGATTTACCCTCT 58.891 52.381 0.00 0.00 34.64 3.69
879 887 2.981909 CTGCTGGGGTGCACACTG 60.982 66.667 20.52 15.14 38.12 3.66
880 888 4.962836 GCTGCTGGGGTGCACACT 62.963 66.667 20.52 0.00 38.12 3.55
887 895 2.193536 GTTTTCACGCTGCTGGGGT 61.194 57.895 12.23 3.61 41.97 4.95
986 1016 2.930562 GGGTGGGTCTCAGCTGGT 60.931 66.667 15.13 0.00 43.01 4.00
991 1021 0.252012 AGAGAGTGGGTGGGTCTCAG 60.252 60.000 1.71 0.00 39.43 3.35
1079 1122 0.321387 CAGAGGCAGAAGCAGAAGCA 60.321 55.000 0.00 0.00 45.49 3.91
1082 1125 1.681666 CCCAGAGGCAGAAGCAGAA 59.318 57.895 0.00 0.00 44.61 3.02
1088 1131 2.935481 CCACCCCCAGAGGCAGAA 60.935 66.667 0.00 0.00 0.00 3.02
1435 1484 6.094048 ACTGGCTTTAGTGCTGTAAACATATG 59.906 38.462 0.00 0.00 0.00 1.78
1436 1485 6.180472 ACTGGCTTTAGTGCTGTAAACATAT 58.820 36.000 0.00 0.00 0.00 1.78
1437 1486 5.556915 ACTGGCTTTAGTGCTGTAAACATA 58.443 37.500 0.00 0.00 0.00 2.29
1438 1487 4.398319 ACTGGCTTTAGTGCTGTAAACAT 58.602 39.130 0.00 0.00 0.00 2.71
1439 1488 3.813166 GACTGGCTTTAGTGCTGTAAACA 59.187 43.478 0.00 0.00 0.00 2.83
1440 1489 4.065789 AGACTGGCTTTAGTGCTGTAAAC 58.934 43.478 0.00 0.00 0.00 2.01
1441 1490 4.065088 CAGACTGGCTTTAGTGCTGTAAA 58.935 43.478 0.00 0.00 0.00 2.01
1445 1494 2.072298 GACAGACTGGCTTTAGTGCTG 58.928 52.381 7.51 0.00 34.70 4.41
1467 1517 6.106673 CCCTTTTCGTCAGACAGTATTACAT 58.893 40.000 0.41 0.00 0.00 2.29
1541 1591 7.544622 AGAAGGTTTTTGGTTTTACAGTCTTC 58.455 34.615 0.00 0.00 0.00 2.87
1581 1633 3.442977 AGGCTGACATTCAATCTCTTTGC 59.557 43.478 0.00 0.00 35.16 3.68
1685 1737 2.030007 TGCACTGTTTTATTCAGGCTGC 60.030 45.455 10.34 0.00 36.29 5.25
1759 1811 1.492176 CTCTCTGCATATGGTGGGGTT 59.508 52.381 4.56 0.00 0.00 4.11
1760 1812 1.135094 CTCTCTGCATATGGTGGGGT 58.865 55.000 4.56 0.00 0.00 4.95
1763 1815 4.406648 TGTAACTCTCTGCATATGGTGG 57.593 45.455 4.56 0.00 0.00 4.61
1855 1916 6.187727 ACAAAGATCCACAGTTAGAGGAAA 57.812 37.500 0.00 0.00 40.53 3.13
1887 1948 5.652452 CGGGGGATTTTTCTAGTGAGAATTT 59.348 40.000 0.00 0.00 41.40 1.82
1892 1954 3.432326 CCTCGGGGGATTTTTCTAGTGAG 60.432 52.174 0.00 0.00 37.23 3.51
2142 2214 6.096423 AGCATTCTCATGACAATTAACTGCAT 59.904 34.615 8.36 0.00 31.07 3.96
2181 2253 8.328758 ACTCCAATATCAAGTCTATTCCACAAA 58.671 33.333 0.00 0.00 0.00 2.83
2183 2255 7.437713 ACTCCAATATCAAGTCTATTCCACA 57.562 36.000 0.00 0.00 0.00 4.17
2194 2266 7.307632 GCATAGCTGTGTAACTCCAATATCAAG 60.308 40.741 12.41 0.00 38.04 3.02
2515 2588 3.327757 GGAATGCATCATAGTAGACCCCA 59.672 47.826 0.00 0.00 0.00 4.96
2571 2644 2.038557 GGAGTAGAGTTTCCAGGCACAA 59.961 50.000 0.00 0.00 33.55 3.33
2634 2888 3.442625 AGCACTCCAATGTGATGACAATG 59.557 43.478 0.00 0.00 40.12 2.82
2635 2889 3.693807 AGCACTCCAATGTGATGACAAT 58.306 40.909 0.00 0.00 40.12 2.71
2636 2890 3.144657 AGCACTCCAATGTGATGACAA 57.855 42.857 0.00 0.00 40.12 3.18
2647 2901 3.440173 GCAAGCACTAAATAGCACTCCAA 59.560 43.478 0.00 0.00 0.00 3.53
2949 3205 1.299648 CGGCAAGTGGATTCCCTGA 59.700 57.895 0.00 0.00 0.00 3.86
3221 3477 3.871574 ACACACGCGCACCAACAC 61.872 61.111 5.73 0.00 0.00 3.32
3222 3478 3.870422 CACACACGCGCACCAACA 61.870 61.111 5.73 0.00 0.00 3.33
3223 3479 3.871574 ACACACACGCGCACCAAC 61.872 61.111 5.73 0.00 0.00 3.77
3224 3480 3.870422 CACACACACGCGCACCAA 61.870 61.111 5.73 0.00 0.00 3.67
3227 3483 3.733190 AAAGCACACACACGCGCAC 62.733 57.895 5.73 0.00 0.00 5.34
3228 3484 3.504273 AAAGCACACACACGCGCA 61.504 55.556 5.73 0.00 0.00 6.09
3229 3485 2.715864 ATCAAAGCACACACACGCGC 62.716 55.000 5.73 0.00 0.00 6.86
3230 3486 0.316937 AATCAAAGCACACACACGCG 60.317 50.000 3.53 3.53 0.00 6.01
3355 3613 4.957327 AGGTTCCAGTGAGTCCTATACTTC 59.043 45.833 0.00 0.00 39.07 3.01
3412 3670 1.066573 AGACATGCTTCCCTGAGAACG 60.067 52.381 0.00 0.00 0.00 3.95
3425 3683 2.996621 AGCGAGTCAACTTAAGACATGC 59.003 45.455 10.09 5.72 38.46 4.06
3444 3702 6.980978 TCATATGCAAGTTACACTCTCTAAGC 59.019 38.462 0.00 0.00 0.00 3.09
3605 3864 0.935898 CAATGAGATCGCTGCCTCAC 59.064 55.000 8.86 0.00 41.59 3.51
3714 3973 4.970662 TGTTGAAGCCAATTGATCTAGC 57.029 40.909 7.12 0.83 34.39 3.42
3833 4092 6.547141 CACATCTTTATCATCCCCAGCTTTAA 59.453 38.462 0.00 0.00 0.00 1.52
3912 4171 4.884247 ACTGTTGGCTGAGTAGACTTAAC 58.116 43.478 0.00 0.00 31.21 2.01
3934 4193 4.400529 TGCGTTTCTCCTTGCTATCATA 57.599 40.909 0.00 0.00 0.00 2.15
3957 4216 4.963318 AAGTGATGAGTTGAGTTCCTCA 57.037 40.909 0.00 0.00 41.61 3.86
3993 4252 0.530870 GGCGCAGGTTCTGATACTCC 60.531 60.000 10.83 0.00 32.44 3.85
3999 4258 1.959226 GAAACGGCGCAGGTTCTGA 60.959 57.895 27.75 0.00 35.11 3.27
4209 4475 5.300752 TCAGAAGAAGCCTTTAAGTCTGTG 58.699 41.667 7.54 0.26 31.62 3.66
4248 4514 6.901081 TTCTCAGACAGTAGTTCAGAATCA 57.099 37.500 0.00 0.00 0.00 2.57
4291 4557 3.505293 GCAACAGAGAGCTTTTCTTCCAT 59.495 43.478 0.00 0.00 35.87 3.41
4404 4670 4.566426 ATCTCTAAGGCTTTTCAGTGCT 57.434 40.909 4.45 0.00 0.00 4.40
4477 4743 4.398319 TCATCAAGGTCCTTGGAAAGTTC 58.602 43.478 27.79 0.00 44.25 3.01
4486 4752 4.952335 CCTATTTGCTTCATCAAGGTCCTT 59.048 41.667 0.00 0.00 0.00 3.36
4552 4818 4.520492 ACCTTCTCGCATTTCATTGAACTT 59.480 37.500 0.00 0.00 0.00 2.66
4669 4935 7.010339 ACTCATTAGAGGTAGCTTCAAGTTT 57.990 36.000 0.00 0.00 46.44 2.66
4693 4959 2.330254 CTTCCACGGCAGAAGCAAA 58.670 52.632 0.00 0.00 44.61 3.68
4719 4985 4.279169 TCCAGCAATTCTTTCTTCAGGTTG 59.721 41.667 0.00 0.00 0.00 3.77
4797 5063 3.262420 CTCCCTATTCAAAGTGGTCACG 58.738 50.000 0.00 0.00 36.20 4.35
4803 5069 3.944015 CCTCAAGCTCCCTATTCAAAGTG 59.056 47.826 0.00 0.00 0.00 3.16
4908 5174 0.733909 CTGCGCTCGTGTTCATCTCA 60.734 55.000 9.73 0.00 0.00 3.27
4969 5235 3.389329 TCTTTCTCTGCTTCAAGAGTGGT 59.611 43.478 0.00 0.00 43.57 4.16
5361 5627 1.396301 GGAGTCTCAGCAGCAATTTCG 59.604 52.381 1.47 0.00 0.00 3.46
5423 5689 1.354040 CAGATAGATTCATCGCGGCC 58.646 55.000 6.13 0.00 0.00 6.13
5425 5691 2.732412 ACCAGATAGATTCATCGCGG 57.268 50.000 6.13 0.00 0.00 6.46
5502 5768 7.498900 TGCTACAGGATGGTAGTATCAAAAATG 59.501 37.037 0.00 0.00 43.62 2.32
5528 5794 3.377253 AGCACTGAAATGATGACCCAT 57.623 42.857 0.00 0.00 0.00 4.00
5530 5796 5.841957 AAATAGCACTGAAATGATGACCC 57.158 39.130 0.00 0.00 0.00 4.46
5562 5828 2.480419 GGATGTCTCAAACGTCACAAGG 59.520 50.000 0.00 0.00 44.42 3.61
5613 6058 9.237846 CAAGTAAACTCTCAAATTCTCAAAACC 57.762 33.333 0.00 0.00 0.00 3.27
5637 6082 6.973474 CCGTTCAAAAATTAACCTGTACACAA 59.027 34.615 0.00 0.00 0.00 3.33
5850 6304 1.965414 TGGGGTGATTAAGCAGGAGA 58.035 50.000 0.00 0.00 0.00 3.71
5957 6411 4.010349 AGCTCTGCAAGTTTTATACACCC 58.990 43.478 0.00 0.00 33.76 4.61
5988 6447 9.991906 AATTTGGCGTACATACTTGTAGTATAT 57.008 29.630 0.00 0.00 39.26 0.86
5989 6448 9.820725 AAATTTGGCGTACATACTTGTAGTATA 57.179 29.630 0.00 0.00 39.26 1.47
5997 6456 5.105917 CCCTTGAAATTTGGCGTACATACTT 60.106 40.000 0.00 0.00 0.00 2.24
6183 6645 4.695455 ACGTGGGAGACATTATTTCTGTTG 59.305 41.667 0.00 0.00 0.00 3.33
6361 6829 6.782000 AGCCCATAATATTTGCCACTGATAAA 59.218 34.615 0.00 0.00 0.00 1.40
6390 6858 4.591498 ACATGCCCATTATGCAAAGATGAT 59.409 37.500 8.40 0.00 42.92 2.45
6450 6918 4.280819 ACAATACAACTTGATCCATGGGG 58.719 43.478 13.02 0.17 0.00 4.96
6552 7025 7.165460 ACTTCTGCAATGATCATCAAATCAA 57.835 32.000 9.06 0.00 39.04 2.57
6553 7026 6.769134 ACTTCTGCAATGATCATCAAATCA 57.231 33.333 9.06 2.43 39.85 2.57
6554 7027 7.481642 AGAACTTCTGCAATGATCATCAAATC 58.518 34.615 9.06 0.00 0.00 2.17
6555 7028 7.406031 AGAACTTCTGCAATGATCATCAAAT 57.594 32.000 9.06 0.00 0.00 2.32
6556 7029 6.829229 AGAACTTCTGCAATGATCATCAAA 57.171 33.333 9.06 0.00 0.00 2.69
6619 7092 2.104111 TGTTATAGAACCGCCTCATGGG 59.896 50.000 0.00 0.00 34.38 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.