Multiple sequence alignment - TraesCS3A01G117700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G117700 chr3A 100.000 3340 0 0 1 3340 88188718 88192057 0.000000e+00 6168.0
1 TraesCS3A01G117700 chr3A 95.575 113 5 0 3228 3340 745904868 745904756 7.360000e-42 182.0
2 TraesCS3A01G117700 chr3A 93.966 116 7 0 3225 3340 682267614 682267729 3.420000e-40 176.0
3 TraesCS3A01G117700 chr3B 86.976 2027 99 58 127 2094 120405865 120403945 0.000000e+00 2128.0
4 TraesCS3A01G117700 chr3B 92.004 1138 50 20 2100 3230 120403856 120402753 0.000000e+00 1559.0
5 TraesCS3A01G117700 chr3B 92.941 85 5 1 371 454 120396595 120396679 4.530000e-24 122.0
6 TraesCS3A01G117700 chr3D 90.852 1443 63 26 672 2094 74761080 74759687 0.000000e+00 1869.0
7 TraesCS3A01G117700 chr3D 91.405 605 17 12 2638 3230 74759290 74758709 0.000000e+00 797.0
8 TraesCS3A01G117700 chr3D 94.721 341 15 1 2105 2442 74759632 74759292 8.210000e-146 527.0
9 TraesCS3A01G117700 chr3D 87.633 283 8 14 335 617 74761996 74761741 1.510000e-78 303.0
10 TraesCS3A01G117700 chr3D 86.058 208 12 11 335 542 74753749 74753939 1.210000e-49 207.0
11 TraesCS3A01G117700 chr5A 95.495 111 5 0 3230 3340 645984346 645984236 9.520000e-41 178.0
12 TraesCS3A01G117700 chr5A 94.595 111 6 0 3230 3340 561181893 561182003 4.430000e-39 172.0
13 TraesCS3A01G117700 chr5A 93.805 113 7 0 3228 3340 34251159 34251271 1.590000e-38 171.0
14 TraesCS3A01G117700 chr2A 95.495 111 5 0 3228 3338 33295632 33295742 9.520000e-41 178.0
15 TraesCS3A01G117700 chr6A 94.595 111 6 0 3230 3340 78006839 78006729 4.430000e-39 172.0
16 TraesCS3A01G117700 chr1A 94.595 111 6 0 3230 3340 48597968 48597858 4.430000e-39 172.0
17 TraesCS3A01G117700 chr1A 93.805 113 7 0 3228 3340 376474607 376474719 1.590000e-38 171.0
18 TraesCS3A01G117700 chr1D 81.410 156 26 1 1571 1726 119404916 119404764 1.260000e-24 124.0
19 TraesCS3A01G117700 chr1D 97.826 46 1 0 1106 1151 7591370 7591325 2.760000e-11 80.5
20 TraesCS3A01G117700 chr7D 97.826 46 1 0 1106 1151 151316082 151316037 2.760000e-11 80.5
21 TraesCS3A01G117700 chr7A 91.111 45 1 3 1175 1218 664052277 664052235 1.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G117700 chr3A 88188718 88192057 3339 False 6168.0 6168 100.00000 1 3340 1 chr3A.!!$F1 3339
1 TraesCS3A01G117700 chr3B 120402753 120405865 3112 True 1843.5 2128 89.49000 127 3230 2 chr3B.!!$R1 3103
2 TraesCS3A01G117700 chr3D 74758709 74761996 3287 True 874.0 1869 91.15275 335 3230 4 chr3D.!!$R1 2895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 1423 0.103937 GTGCCTAGCAGCAGGAGTAG 59.896 60.0 13.41 0.0 45.14 2.57 F
1719 2389 0.250234 TCTTCGGGGACTGCATTCTG 59.750 55.0 3.88 0.0 32.53 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2669 0.106708 GGGATGCTCATAGGCGAACA 59.893 55.0 0.0 0.0 34.52 3.18 R
3263 4067 0.036483 TTACCTTAAACGGACGGGGC 60.036 55.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.944212 ATACGTAAAGAAAATTCAGAAAACGG 57.056 30.769 0.00 0.00 0.00 4.44
30 31 6.203647 ACGTAAAGAAAATTCAGAAAACGGG 58.796 36.000 0.00 0.00 0.00 5.28
31 32 5.116528 CGTAAAGAAAATTCAGAAAACGGGC 59.883 40.000 0.00 0.00 0.00 6.13
32 33 3.660501 AGAAAATTCAGAAAACGGGCC 57.339 42.857 0.00 0.00 0.00 5.80
33 34 3.230976 AGAAAATTCAGAAAACGGGCCT 58.769 40.909 0.84 0.00 0.00 5.19
34 35 4.403734 AGAAAATTCAGAAAACGGGCCTA 58.596 39.130 0.84 0.00 0.00 3.93
35 36 4.459337 AGAAAATTCAGAAAACGGGCCTAG 59.541 41.667 0.84 0.00 0.00 3.02
36 37 2.420058 ATTCAGAAAACGGGCCTAGG 57.580 50.000 3.67 3.67 0.00 3.02
37 38 1.061546 TTCAGAAAACGGGCCTAGGT 58.938 50.000 11.31 0.00 0.00 3.08
38 39 0.323629 TCAGAAAACGGGCCTAGGTG 59.676 55.000 11.31 3.39 0.00 4.00
39 40 1.002502 AGAAAACGGGCCTAGGTGC 60.003 57.895 11.31 0.00 0.00 5.01
40 41 1.302993 GAAAACGGGCCTAGGTGCA 60.303 57.895 11.31 0.00 0.00 4.57
41 42 0.891904 GAAAACGGGCCTAGGTGCAA 60.892 55.000 11.31 0.00 0.00 4.08
42 43 0.251608 AAAACGGGCCTAGGTGCAAT 60.252 50.000 11.31 0.00 0.00 3.56
43 44 0.965363 AAACGGGCCTAGGTGCAATG 60.965 55.000 11.31 0.00 0.00 2.82
44 45 1.847798 AACGGGCCTAGGTGCAATGA 61.848 55.000 11.31 0.00 0.00 2.57
45 46 1.077787 CGGGCCTAGGTGCAATGAA 60.078 57.895 11.31 0.00 0.00 2.57
46 47 0.466189 CGGGCCTAGGTGCAATGAAT 60.466 55.000 11.31 0.00 0.00 2.57
47 48 1.322442 GGGCCTAGGTGCAATGAATC 58.678 55.000 11.31 0.00 0.00 2.52
48 49 1.322442 GGCCTAGGTGCAATGAATCC 58.678 55.000 11.31 0.00 0.00 3.01
49 50 1.410083 GGCCTAGGTGCAATGAATCCA 60.410 52.381 11.31 0.00 0.00 3.41
50 51 2.378038 GCCTAGGTGCAATGAATCCAA 58.622 47.619 11.31 0.00 0.00 3.53
51 52 2.360165 GCCTAGGTGCAATGAATCCAAG 59.640 50.000 11.31 0.00 0.00 3.61
52 53 2.954318 CCTAGGTGCAATGAATCCAAGG 59.046 50.000 0.00 0.00 0.00 3.61
53 54 1.188863 AGGTGCAATGAATCCAAGGC 58.811 50.000 0.00 0.00 0.00 4.35
54 55 1.188863 GGTGCAATGAATCCAAGGCT 58.811 50.000 0.00 0.00 0.00 4.58
55 56 1.551883 GGTGCAATGAATCCAAGGCTT 59.448 47.619 0.00 0.00 0.00 4.35
56 57 2.417787 GGTGCAATGAATCCAAGGCTTC 60.418 50.000 0.00 0.00 0.00 3.86
57 58 1.473677 TGCAATGAATCCAAGGCTTCG 59.526 47.619 0.00 0.00 0.00 3.79
58 59 1.474077 GCAATGAATCCAAGGCTTCGT 59.526 47.619 0.00 0.00 0.00 3.85
59 60 2.682856 GCAATGAATCCAAGGCTTCGTA 59.317 45.455 0.00 0.00 0.00 3.43
60 61 3.128589 GCAATGAATCCAAGGCTTCGTAA 59.871 43.478 0.00 0.00 0.00 3.18
61 62 4.662145 CAATGAATCCAAGGCTTCGTAAC 58.338 43.478 0.00 0.00 0.00 2.50
62 63 3.410631 TGAATCCAAGGCTTCGTAACA 57.589 42.857 0.00 0.00 0.00 2.41
63 64 3.950397 TGAATCCAAGGCTTCGTAACAT 58.050 40.909 0.00 0.00 0.00 2.71
64 65 4.331968 TGAATCCAAGGCTTCGTAACATT 58.668 39.130 0.00 0.00 0.00 2.71
65 66 5.492895 TGAATCCAAGGCTTCGTAACATTA 58.507 37.500 0.00 0.00 0.00 1.90
66 67 5.353123 TGAATCCAAGGCTTCGTAACATTAC 59.647 40.000 0.00 0.00 0.00 1.89
67 68 4.274602 TCCAAGGCTTCGTAACATTACA 57.725 40.909 0.00 0.00 33.28 2.41
68 69 4.839121 TCCAAGGCTTCGTAACATTACAT 58.161 39.130 0.00 0.00 33.28 2.29
69 70 4.873827 TCCAAGGCTTCGTAACATTACATC 59.126 41.667 0.00 0.00 33.28 3.06
70 71 4.876107 CCAAGGCTTCGTAACATTACATCT 59.124 41.667 0.00 0.00 33.28 2.90
71 72 5.354234 CCAAGGCTTCGTAACATTACATCTT 59.646 40.000 0.00 0.00 33.28 2.40
72 73 6.128007 CCAAGGCTTCGTAACATTACATCTTT 60.128 38.462 0.00 0.00 33.28 2.52
73 74 6.663944 AGGCTTCGTAACATTACATCTTTC 57.336 37.500 2.88 0.00 33.28 2.62
74 75 5.291128 AGGCTTCGTAACATTACATCTTTCG 59.709 40.000 2.88 0.00 33.28 3.46
75 76 4.956184 GCTTCGTAACATTACATCTTTCGC 59.044 41.667 2.88 0.00 33.28 4.70
76 77 5.459110 TTCGTAACATTACATCTTTCGCC 57.541 39.130 2.88 0.00 33.28 5.54
77 78 4.751060 TCGTAACATTACATCTTTCGCCT 58.249 39.130 2.88 0.00 33.28 5.52
78 79 4.802039 TCGTAACATTACATCTTTCGCCTC 59.198 41.667 2.88 0.00 33.28 4.70
79 80 4.804139 CGTAACATTACATCTTTCGCCTCT 59.196 41.667 2.88 0.00 33.28 3.69
80 81 5.975344 CGTAACATTACATCTTTCGCCTCTA 59.025 40.000 2.88 0.00 33.28 2.43
81 82 6.142480 CGTAACATTACATCTTTCGCCTCTAG 59.858 42.308 2.88 0.00 33.28 2.43
82 83 5.854010 ACATTACATCTTTCGCCTCTAGA 57.146 39.130 0.00 0.00 0.00 2.43
83 84 5.593010 ACATTACATCTTTCGCCTCTAGAC 58.407 41.667 0.00 0.00 0.00 2.59
84 85 5.361285 ACATTACATCTTTCGCCTCTAGACT 59.639 40.000 0.00 0.00 0.00 3.24
85 86 6.546403 ACATTACATCTTTCGCCTCTAGACTA 59.454 38.462 0.00 0.00 0.00 2.59
86 87 6.621316 TTACATCTTTCGCCTCTAGACTAG 57.379 41.667 2.81 2.81 0.00 2.57
87 88 4.783055 ACATCTTTCGCCTCTAGACTAGA 58.217 43.478 11.71 11.71 0.00 2.43
88 89 4.577283 ACATCTTTCGCCTCTAGACTAGAC 59.423 45.833 8.17 0.00 0.00 2.59
89 90 4.217836 TCTTTCGCCTCTAGACTAGACA 57.782 45.455 8.17 0.00 0.00 3.41
90 91 4.586884 TCTTTCGCCTCTAGACTAGACAA 58.413 43.478 8.17 0.00 0.00 3.18
91 92 4.636648 TCTTTCGCCTCTAGACTAGACAAG 59.363 45.833 8.17 6.29 0.00 3.16
92 93 2.920524 TCGCCTCTAGACTAGACAAGG 58.079 52.381 8.17 9.57 0.00 3.61
93 94 2.504585 TCGCCTCTAGACTAGACAAGGA 59.495 50.000 16.73 6.95 0.00 3.36
94 95 3.054582 TCGCCTCTAGACTAGACAAGGAA 60.055 47.826 16.73 4.78 0.00 3.36
95 96 3.065648 CGCCTCTAGACTAGACAAGGAAC 59.934 52.174 16.73 3.38 0.00 3.62
96 97 4.017808 GCCTCTAGACTAGACAAGGAACA 58.982 47.826 16.73 0.00 0.00 3.18
97 98 4.142337 GCCTCTAGACTAGACAAGGAACAC 60.142 50.000 16.73 0.29 0.00 3.32
98 99 5.010933 CCTCTAGACTAGACAAGGAACACA 58.989 45.833 8.17 0.00 0.00 3.72
99 100 5.106078 CCTCTAGACTAGACAAGGAACACAC 60.106 48.000 8.17 0.00 0.00 3.82
100 101 3.644884 AGACTAGACAAGGAACACACG 57.355 47.619 0.00 0.00 0.00 4.49
101 102 2.296471 AGACTAGACAAGGAACACACGG 59.704 50.000 0.00 0.00 0.00 4.94
102 103 2.295349 GACTAGACAAGGAACACACGGA 59.705 50.000 0.00 0.00 0.00 4.69
103 104 2.296471 ACTAGACAAGGAACACACGGAG 59.704 50.000 0.00 0.00 0.00 4.63
104 105 1.410004 AGACAAGGAACACACGGAGA 58.590 50.000 0.00 0.00 0.00 3.71
105 106 1.760613 AGACAAGGAACACACGGAGAA 59.239 47.619 0.00 0.00 0.00 2.87
106 107 2.135933 GACAAGGAACACACGGAGAAG 58.864 52.381 0.00 0.00 0.00 2.85
107 108 1.760613 ACAAGGAACACACGGAGAAGA 59.239 47.619 0.00 0.00 0.00 2.87
108 109 2.135933 CAAGGAACACACGGAGAAGAC 58.864 52.381 0.00 0.00 0.00 3.01
109 110 1.410004 AGGAACACACGGAGAAGACA 58.590 50.000 0.00 0.00 0.00 3.41
110 111 1.971357 AGGAACACACGGAGAAGACAT 59.029 47.619 0.00 0.00 0.00 3.06
111 112 3.162666 AGGAACACACGGAGAAGACATA 58.837 45.455 0.00 0.00 0.00 2.29
112 113 3.056749 AGGAACACACGGAGAAGACATAC 60.057 47.826 0.00 0.00 0.00 2.39
113 114 3.305813 GGAACACACGGAGAAGACATACA 60.306 47.826 0.00 0.00 0.00 2.29
114 115 3.577649 ACACACGGAGAAGACATACAG 57.422 47.619 0.00 0.00 0.00 2.74
115 116 2.891580 ACACACGGAGAAGACATACAGT 59.108 45.455 0.00 0.00 0.00 3.55
116 117 4.077108 ACACACGGAGAAGACATACAGTA 58.923 43.478 0.00 0.00 0.00 2.74
117 118 4.082895 ACACACGGAGAAGACATACAGTAC 60.083 45.833 0.00 0.00 0.00 2.73
118 119 4.156190 CACACGGAGAAGACATACAGTACT 59.844 45.833 0.00 0.00 0.00 2.73
119 120 5.353400 CACACGGAGAAGACATACAGTACTA 59.647 44.000 0.00 0.00 0.00 1.82
120 121 5.353678 ACACGGAGAAGACATACAGTACTAC 59.646 44.000 0.00 0.00 0.00 2.73
121 122 4.569966 ACGGAGAAGACATACAGTACTACG 59.430 45.833 0.00 0.00 37.88 3.51
122 123 4.569966 CGGAGAAGACATACAGTACTACGT 59.430 45.833 0.00 0.00 31.94 3.57
123 124 5.750547 CGGAGAAGACATACAGTACTACGTA 59.249 44.000 0.00 0.00 31.94 3.57
124 125 6.292061 CGGAGAAGACATACAGTACTACGTAC 60.292 46.154 0.00 0.00 39.10 3.67
125 126 6.292061 GGAGAAGACATACAGTACTACGTACG 60.292 46.154 15.01 15.01 43.05 3.67
126 127 6.102663 AGAAGACATACAGTACTACGTACGT 58.897 40.000 25.98 25.98 43.05 3.57
127 128 7.258441 AGAAGACATACAGTACTACGTACGTA 58.742 38.462 25.41 25.41 43.05 3.57
128 129 6.814076 AGACATACAGTACTACGTACGTAC 57.186 41.667 23.60 16.95 43.05 3.67
144 145 6.389350 CGTACGTACGTATGAGAAAATGTTG 58.611 40.000 33.85 5.55 44.13 3.33
153 154 7.277981 ACGTATGAGAAAATGTTGATCCTACAC 59.722 37.037 0.00 0.00 0.00 2.90
161 162 0.611200 TTGATCCTACACCACCCACG 59.389 55.000 0.00 0.00 0.00 4.94
163 164 1.272592 TGATCCTACACCACCCACGTA 60.273 52.381 0.00 0.00 0.00 3.57
172 173 2.623889 CACCACCCACGTAAATTGGAAA 59.376 45.455 10.67 0.00 36.02 3.13
186 187 0.108233 TGGAAATACCGCCGTGTACC 60.108 55.000 0.00 0.00 42.61 3.34
198 199 2.414138 GCCGTGTACCAAATCACTGTAC 59.586 50.000 0.00 0.00 36.30 2.90
202 203 5.180492 CCGTGTACCAAATCACTGTACATTT 59.820 40.000 0.00 0.00 44.55 2.32
205 206 7.112844 CGTGTACCAAATCACTGTACATTTTTG 59.887 37.037 0.00 4.74 44.55 2.44
206 207 7.381139 GTGTACCAAATCACTGTACATTTTTGG 59.619 37.037 23.56 23.56 44.55 3.28
207 208 5.296748 ACCAAATCACTGTACATTTTTGGC 58.703 37.500 24.35 0.00 44.32 4.52
208 209 5.163364 ACCAAATCACTGTACATTTTTGGCA 60.163 36.000 24.35 0.00 44.32 4.92
209 210 5.177327 CCAAATCACTGTACATTTTTGGCAC 59.823 40.000 18.22 0.00 37.40 5.01
211 212 2.625790 TCACTGTACATTTTTGGCACCC 59.374 45.455 0.00 0.00 0.00 4.61
212 213 1.611491 ACTGTACATTTTTGGCACCCG 59.389 47.619 0.00 0.00 0.00 5.28
213 214 0.962489 TGTACATTTTTGGCACCCGG 59.038 50.000 0.00 0.00 0.00 5.73
214 215 0.389296 GTACATTTTTGGCACCCGGC 60.389 55.000 0.00 0.00 43.74 6.13
233 236 2.928396 AGGGGTGAAGTGACGGGG 60.928 66.667 0.00 0.00 0.00 5.73
276 282 1.776662 TCGTCCTCTGGAAGGGTATG 58.223 55.000 0.18 0.00 46.23 2.39
280 286 1.770658 TCCTCTGGAAGGGTATGCATG 59.229 52.381 10.16 0.00 46.23 4.06
284 290 0.833949 TGGAAGGGTATGCATGCGTA 59.166 50.000 15.71 15.71 0.00 4.42
285 291 1.226746 GGAAGGGTATGCATGCGTAC 58.773 55.000 32.94 32.94 37.62 3.67
286 292 0.859232 GAAGGGTATGCATGCGTACG 59.141 55.000 33.04 11.84 38.83 3.67
287 293 0.177141 AAGGGTATGCATGCGTACGT 59.823 50.000 33.04 24.00 38.83 3.57
288 294 1.034356 AGGGTATGCATGCGTACGTA 58.966 50.000 33.04 13.65 38.83 3.57
289 295 1.000607 AGGGTATGCATGCGTACGTAG 60.001 52.381 33.04 8.17 38.83 3.51
290 296 1.415374 GGTATGCATGCGTACGTAGG 58.585 55.000 33.04 15.75 38.83 3.18
291 297 1.415374 GTATGCATGCGTACGTAGGG 58.585 55.000 29.06 11.19 0.00 3.53
292 298 0.319211 TATGCATGCGTACGTAGGGC 60.319 55.000 19.09 19.86 0.00 5.19
293 299 2.965462 GCATGCGTACGTAGGGCC 60.965 66.667 19.09 0.00 0.00 5.80
294 300 2.497293 CATGCGTACGTAGGGCCA 59.503 61.111 17.90 5.26 0.00 5.36
295 301 1.591594 CATGCGTACGTAGGGCCAG 60.592 63.158 17.90 0.00 0.00 4.85
296 302 2.792947 ATGCGTACGTAGGGCCAGG 61.793 63.158 17.90 0.00 0.00 4.45
297 303 4.217159 GCGTACGTAGGGCCAGGG 62.217 72.222 17.90 0.00 0.00 4.45
298 304 4.217159 CGTACGTAGGGCCAGGGC 62.217 72.222 6.18 3.77 41.06 5.19
367 410 4.773117 GTCTGCGTCCGTCCCGTC 62.773 72.222 0.00 0.00 0.00 4.79
373 416 4.426112 GTCCGTCCCGTCCCGTTC 62.426 72.222 0.00 0.00 0.00 3.95
463 506 4.394712 CACCACTCGCCACCCCTC 62.395 72.222 0.00 0.00 0.00 4.30
464 507 4.640690 ACCACTCGCCACCCCTCT 62.641 66.667 0.00 0.00 0.00 3.69
491 534 2.356695 TCTCTGATTTTGATGCATGCGG 59.643 45.455 14.09 0.00 0.00 5.69
506 549 3.767230 CGGAAGTGACGCACGCAG 61.767 66.667 4.69 0.12 39.64 5.18
507 550 2.355837 GGAAGTGACGCACGCAGA 60.356 61.111 4.69 0.00 39.64 4.26
508 551 2.375766 GGAAGTGACGCACGCAGAG 61.376 63.158 4.69 0.00 39.64 3.35
509 552 1.661821 GAAGTGACGCACGCAGAGT 60.662 57.895 4.69 0.00 39.64 3.24
510 553 0.386858 GAAGTGACGCACGCAGAGTA 60.387 55.000 4.69 0.00 39.64 2.59
511 554 0.387367 AAGTGACGCACGCAGAGTAG 60.387 55.000 4.69 0.00 39.64 2.57
512 555 1.801913 GTGACGCACGCAGAGTAGG 60.802 63.158 0.00 0.00 0.00 3.18
513 556 1.969589 TGACGCACGCAGAGTAGGA 60.970 57.895 0.00 0.00 0.00 2.94
514 557 1.226435 GACGCACGCAGAGTAGGAG 60.226 63.158 0.00 0.00 0.00 3.69
515 558 1.924320 GACGCACGCAGAGTAGGAGT 61.924 60.000 0.00 0.00 0.00 3.85
519 562 2.017623 GCACGCAGAGTAGGAGTAGGA 61.018 57.143 0.00 0.00 0.00 2.94
542 585 0.635009 TAGAGTGGTGGTAGGGAGGG 59.365 60.000 0.00 0.00 0.00 4.30
543 586 1.153695 AGAGTGGTGGTAGGGAGGGA 61.154 60.000 0.00 0.00 0.00 4.20
544 587 0.688087 GAGTGGTGGTAGGGAGGGAG 60.688 65.000 0.00 0.00 0.00 4.30
545 588 1.689582 GTGGTGGTAGGGAGGGAGG 60.690 68.421 0.00 0.00 0.00 4.30
546 589 2.040779 GGTGGTAGGGAGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
547 590 2.643808 GGTGGTAGGGAGGGAGGGA 61.644 68.421 0.00 0.00 0.00 4.20
548 591 1.075151 GTGGTAGGGAGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
549 592 2.333462 TGGTAGGGAGGGAGGGAGG 61.333 68.421 0.00 0.00 0.00 4.30
622 665 1.092345 CCCTAGCTCGCCTGCTTTTC 61.092 60.000 3.39 0.00 43.74 2.29
627 670 0.671781 GCTCGCCTGCTTTTCTCTCA 60.672 55.000 0.00 0.00 0.00 3.27
639 682 3.151022 CTCTCACCCTCCCTCCGC 61.151 72.222 0.00 0.00 0.00 5.54
724 1373 4.937193 GTCGGAGAGAGACGGAGA 57.063 61.111 0.00 0.00 36.95 3.71
725 1374 2.685364 GTCGGAGAGAGACGGAGAG 58.315 63.158 0.00 0.00 36.95 3.20
726 1375 0.176219 GTCGGAGAGAGACGGAGAGA 59.824 60.000 0.00 0.00 36.95 3.10
767 1416 0.965866 AGAGTACGTGCCTAGCAGCA 60.966 55.000 0.00 0.00 40.08 4.41
772 1421 2.985456 GTGCCTAGCAGCAGGAGT 59.015 61.111 13.41 0.00 45.14 3.85
773 1422 2.202866 GTGCCTAGCAGCAGGAGTA 58.797 57.895 13.41 0.00 45.14 2.59
774 1423 0.103937 GTGCCTAGCAGCAGGAGTAG 59.896 60.000 13.41 0.00 45.14 2.57
775 1424 1.068921 GCCTAGCAGCAGGAGTAGC 59.931 63.158 13.41 0.00 38.00 3.58
776 1425 1.680522 GCCTAGCAGCAGGAGTAGCA 61.681 60.000 13.41 0.00 38.00 3.49
777 1426 0.388659 CCTAGCAGCAGGAGTAGCAG 59.611 60.000 5.22 0.00 38.00 4.24
778 1427 0.388659 CTAGCAGCAGGAGTAGCAGG 59.611 60.000 0.00 0.00 0.00 4.85
779 1428 1.045350 TAGCAGCAGGAGTAGCAGGG 61.045 60.000 0.00 0.00 0.00 4.45
808 1457 2.227626 GGCAGAAGCAGAAGAGGAAAAC 59.772 50.000 0.00 0.00 44.61 2.43
824 1473 0.602905 AAACGAGAAAGGTGAGGGCG 60.603 55.000 0.00 0.00 0.00 6.13
825 1474 2.125512 CGAGAAAGGTGAGGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
826 1475 2.943978 CGAGAAAGGTGAGGGCGGT 61.944 63.158 0.00 0.00 0.00 5.68
827 1476 1.376037 GAGAAAGGTGAGGGCGGTG 60.376 63.158 0.00 0.00 0.00 4.94
828 1477 2.359975 GAAAGGTGAGGGCGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
829 1478 3.175710 AAAGGTGAGGGCGGTGGT 61.176 61.111 0.00 0.00 0.00 4.16
830 1479 3.491598 AAAGGTGAGGGCGGTGGTG 62.492 63.158 0.00 0.00 0.00 4.17
843 1492 3.487626 TGGTGCTGGTGCTGGTGA 61.488 61.111 0.00 0.00 40.48 4.02
849 1498 4.720902 TGGTGCTGGTGATGGCGG 62.721 66.667 0.00 0.00 0.00 6.13
881 1536 2.940410 TGCTTCCGTCGTTTCTTTCTTT 59.060 40.909 0.00 0.00 0.00 2.52
883 1538 3.247886 GCTTCCGTCGTTTCTTTCTTTCT 59.752 43.478 0.00 0.00 0.00 2.52
884 1539 4.260661 GCTTCCGTCGTTTCTTTCTTTCTT 60.261 41.667 0.00 0.00 0.00 2.52
885 1540 4.789095 TCCGTCGTTTCTTTCTTTCTTG 57.211 40.909 0.00 0.00 0.00 3.02
886 1541 4.186159 TCCGTCGTTTCTTTCTTTCTTGT 58.814 39.130 0.00 0.00 0.00 3.16
887 1542 4.632688 TCCGTCGTTTCTTTCTTTCTTGTT 59.367 37.500 0.00 0.00 0.00 2.83
889 1544 5.446741 CCGTCGTTTCTTTCTTTCTTGTTGA 60.447 40.000 0.00 0.00 0.00 3.18
890 1545 6.192360 CGTCGTTTCTTTCTTTCTTGTTGAT 58.808 36.000 0.00 0.00 0.00 2.57
892 1547 6.414987 GTCGTTTCTTTCTTTCTTGTTGATGG 59.585 38.462 0.00 0.00 0.00 3.51
894 1549 6.459573 CGTTTCTTTCTTTCTTGTTGATGGGA 60.460 38.462 0.00 0.00 0.00 4.37
895 1550 6.639632 TTCTTTCTTTCTTGTTGATGGGAG 57.360 37.500 0.00 0.00 0.00 4.30
896 1551 5.694995 TCTTTCTTTCTTGTTGATGGGAGT 58.305 37.500 0.00 0.00 0.00 3.85
943 1598 4.083324 TGTTGCGGATTTGTGATCTTCTTC 60.083 41.667 0.00 0.00 0.00 2.87
946 1601 4.761739 TGCGGATTTGTGATCTTCTTCTTT 59.238 37.500 0.00 0.00 0.00 2.52
947 1602 5.106555 TGCGGATTTGTGATCTTCTTCTTTC 60.107 40.000 0.00 0.00 0.00 2.62
948 1603 5.554636 CGGATTTGTGATCTTCTTCTTTCG 58.445 41.667 0.00 0.00 0.00 3.46
949 1604 5.120830 CGGATTTGTGATCTTCTTCTTTCGT 59.879 40.000 0.00 0.00 0.00 3.85
950 1605 6.310197 GGATTTGTGATCTTCTTCTTTCGTG 58.690 40.000 0.00 0.00 0.00 4.35
953 1608 4.307432 TGTGATCTTCTTCTTTCGTGTCC 58.693 43.478 0.00 0.00 0.00 4.02
955 1610 4.991687 GTGATCTTCTTCTTTCGTGTCCTT 59.008 41.667 0.00 0.00 0.00 3.36
956 1611 4.991056 TGATCTTCTTCTTTCGTGTCCTTG 59.009 41.667 0.00 0.00 0.00 3.61
957 1612 4.665833 TCTTCTTCTTTCGTGTCCTTGA 57.334 40.909 0.00 0.00 0.00 3.02
958 1613 5.018539 TCTTCTTCTTTCGTGTCCTTGAA 57.981 39.130 0.00 0.00 0.00 2.69
959 1614 5.611374 TCTTCTTCTTTCGTGTCCTTGAAT 58.389 37.500 0.00 0.00 0.00 2.57
960 1615 5.696724 TCTTCTTCTTTCGTGTCCTTGAATC 59.303 40.000 0.00 0.00 0.00 2.52
961 1616 5.215252 TCTTCTTTCGTGTCCTTGAATCT 57.785 39.130 0.00 0.00 0.00 2.40
962 1617 5.230942 TCTTCTTTCGTGTCCTTGAATCTC 58.769 41.667 0.00 0.00 0.00 2.75
963 1618 4.600692 TCTTTCGTGTCCTTGAATCTCA 57.399 40.909 0.00 0.00 0.00 3.27
964 1619 4.956085 TCTTTCGTGTCCTTGAATCTCAA 58.044 39.130 0.00 0.00 34.79 3.02
965 1620 5.364778 TCTTTCGTGTCCTTGAATCTCAAA 58.635 37.500 0.00 0.00 35.73 2.69
966 1621 5.236478 TCTTTCGTGTCCTTGAATCTCAAAC 59.764 40.000 0.00 0.00 35.73 2.93
967 1622 4.066646 TCGTGTCCTTGAATCTCAAACA 57.933 40.909 0.00 0.00 35.73 2.83
1475 2145 1.301716 GCAGCAGGTTCTTCCACGA 60.302 57.895 0.00 0.00 39.02 4.35
1482 2152 2.104170 AGGTTCTTCCACGAGGATCTC 58.896 52.381 1.26 0.00 45.26 2.75
1719 2389 0.250234 TCTTCGGGGACTGCATTCTG 59.750 55.000 3.88 0.00 32.53 3.02
1782 2452 2.125766 AACCCAAGGACGGAGCTTCC 62.126 60.000 0.00 0.00 0.00 3.46
1881 2551 1.018226 CCTGCACGAAGAAGCTGGAG 61.018 60.000 4.57 0.00 46.63 3.86
1965 2644 8.237267 CCAATAATTACACCTGAAAGAACAGTC 58.763 37.037 0.00 0.00 34.07 3.51
1990 2669 3.055530 TCCAACCAATAATTGCGGCATTT 60.056 39.130 13.81 13.81 0.00 2.32
1991 2670 3.063725 CCAACCAATAATTGCGGCATTTG 59.936 43.478 17.67 12.38 0.00 2.32
1993 2672 3.936564 ACCAATAATTGCGGCATTTGTT 58.063 36.364 17.67 14.74 0.00 2.83
1994 2673 3.932089 ACCAATAATTGCGGCATTTGTTC 59.068 39.130 17.67 0.00 0.00 3.18
1995 2674 3.000122 CCAATAATTGCGGCATTTGTTCG 60.000 43.478 17.67 8.35 0.00 3.95
1999 2678 3.183259 GCGGCATTTGTTCGCCTA 58.817 55.556 0.00 0.00 46.62 3.93
2000 2679 1.727467 GCGGCATTTGTTCGCCTAT 59.273 52.632 0.00 0.00 46.62 2.57
2001 2680 0.592247 GCGGCATTTGTTCGCCTATG 60.592 55.000 0.00 0.00 46.62 2.23
2002 2681 1.013596 CGGCATTTGTTCGCCTATGA 58.986 50.000 0.00 0.00 46.62 2.15
2003 2682 1.003545 CGGCATTTGTTCGCCTATGAG 60.004 52.381 0.00 0.00 46.62 2.90
2004 2683 1.268743 GGCATTTGTTCGCCTATGAGC 60.269 52.381 0.00 0.00 45.29 4.26
2005 2684 1.401552 GCATTTGTTCGCCTATGAGCA 59.598 47.619 0.00 0.00 0.00 4.26
2006 2685 2.033801 GCATTTGTTCGCCTATGAGCAT 59.966 45.455 0.00 0.00 0.00 3.79
2007 2686 3.851105 GCATTTGTTCGCCTATGAGCATC 60.851 47.826 0.00 0.00 0.00 3.91
2045 2742 4.537015 GAACAAATCCTGTGAAAACTCGG 58.463 43.478 0.00 0.00 38.67 4.63
2078 2779 5.549742 TGGCAATCCAAAGAAAATGAAGT 57.450 34.783 0.00 0.00 39.99 3.01
2079 2780 5.299148 TGGCAATCCAAAGAAAATGAAGTG 58.701 37.500 0.00 0.00 39.99 3.16
2081 2782 4.152938 GCAATCCAAAGAAAATGAAGTGCC 59.847 41.667 0.00 0.00 0.00 5.01
2094 2795 3.554934 TGAAGTGCCACTTGAACTGAAT 58.445 40.909 16.14 0.00 38.80 2.57
2096 2797 3.213206 AGTGCCACTTGAACTGAATGA 57.787 42.857 0.00 0.00 0.00 2.57
2097 2798 3.554934 AGTGCCACTTGAACTGAATGAA 58.445 40.909 0.00 0.00 0.00 2.57
2098 2799 4.147321 AGTGCCACTTGAACTGAATGAAT 58.853 39.130 0.00 0.00 0.00 2.57
2103 2887 5.858581 GCCACTTGAACTGAATGAATTACAC 59.141 40.000 0.00 0.00 0.00 2.90
2169 2956 2.144482 AGCAAGCTGATTTGTTGTGC 57.856 45.000 0.00 0.00 0.00 4.57
2183 2970 0.737804 TTGTGCGTCAACATTGCAGT 59.262 45.000 0.00 0.00 39.67 4.40
2186 2973 1.081242 GCGTCAACATTGCAGTGGG 60.081 57.895 14.25 5.54 0.00 4.61
2252 3039 1.254026 TCGAAGAGGAAGCCGAGAAA 58.746 50.000 0.00 0.00 0.00 2.52
2253 3040 1.825474 TCGAAGAGGAAGCCGAGAAAT 59.175 47.619 0.00 0.00 0.00 2.17
2263 3050 1.434696 CCGAGAAATGCATGGCCAC 59.565 57.895 8.16 0.00 0.00 5.01
2264 3051 1.063006 CGAGAAATGCATGGCCACG 59.937 57.895 8.16 0.00 0.00 4.94
2367 3154 3.606662 CGATGGCCCGACCGAGAT 61.607 66.667 0.00 0.00 43.94 2.75
2448 3235 1.386485 AGGGGATGGGGGTGATCAG 60.386 63.158 0.00 0.00 0.00 2.90
2449 3236 1.697754 GGGGATGGGGGTGATCAGT 60.698 63.158 0.00 0.00 0.00 3.41
2528 3315 0.457681 GCAGCTGAAGAGGAGTCGAC 60.458 60.000 20.43 7.70 0.00 4.20
2583 3370 0.404040 TCACTTGTGGGGGTTGGATC 59.596 55.000 0.64 0.00 0.00 3.36
2654 3441 2.145397 ACTTACTCGCAGGGATCTGA 57.855 50.000 0.00 0.00 43.49 3.27
2656 3443 2.028130 CTTACTCGCAGGGATCTGAGT 58.972 52.381 0.00 0.00 43.49 3.41
2727 3519 3.138653 TGGCCTTTGGTCCTGTAGTTTTA 59.861 43.478 3.32 0.00 0.00 1.52
2732 3524 6.127980 GCCTTTGGTCCTGTAGTTTTAATCTC 60.128 42.308 0.00 0.00 0.00 2.75
2916 3720 2.230992 GTCATCTCCATCTCCATCTCCG 59.769 54.545 0.00 0.00 0.00 4.63
2938 3742 6.824704 TCCGTTCCTCTTTTCTTTTACTTTGA 59.175 34.615 0.00 0.00 0.00 2.69
2939 3743 7.012044 TCCGTTCCTCTTTTCTTTTACTTTGAG 59.988 37.037 0.00 0.00 0.00 3.02
2940 3744 6.633234 CGTTCCTCTTTTCTTTTACTTTGAGC 59.367 38.462 0.00 0.00 0.00 4.26
2941 3745 7.480810 GTTCCTCTTTTCTTTTACTTTGAGCA 58.519 34.615 0.00 0.00 0.00 4.26
2942 3746 7.264373 TCCTCTTTTCTTTTACTTTGAGCAG 57.736 36.000 0.00 0.00 0.00 4.24
2943 3747 5.917447 CCTCTTTTCTTTTACTTTGAGCAGC 59.083 40.000 0.00 0.00 0.00 5.25
2977 3781 2.106684 AGCACTGATGATGATGATGGCT 59.893 45.455 0.00 0.00 0.00 4.75
2978 3782 2.226674 GCACTGATGATGATGATGGCTG 59.773 50.000 0.00 0.00 0.00 4.85
2979 3783 3.740115 CACTGATGATGATGATGGCTGA 58.260 45.455 0.00 0.00 0.00 4.26
2980 3784 3.748568 CACTGATGATGATGATGGCTGAG 59.251 47.826 0.00 0.00 0.00 3.35
3007 3811 2.231235 CGATGATGGACGGGACATGATA 59.769 50.000 0.00 0.00 0.00 2.15
3050 3854 1.093159 CTGATTTGCCTGCTCCACTC 58.907 55.000 0.00 0.00 0.00 3.51
3053 3857 0.610232 ATTTGCCTGCTCCACTCACC 60.610 55.000 0.00 0.00 0.00 4.02
3126 3930 3.944015 CCAGGCCTAGATAATAATGCTGC 59.056 47.826 3.98 0.00 0.00 5.25
3133 3937 5.233902 CCTAGATAATAATGCTGCGAGATGC 59.766 44.000 0.00 0.00 46.70 3.91
3138 3942 2.955022 AATGCTGCGAGATGCCTCCC 62.955 60.000 0.00 0.00 45.60 4.30
3139 3943 4.166888 GCTGCGAGATGCCTCCCA 62.167 66.667 0.00 0.00 45.60 4.37
3165 3969 4.573900 CAGTCTTTGAGTAACTCATGCCT 58.426 43.478 0.00 0.00 40.39 4.75
3166 3970 4.391216 CAGTCTTTGAGTAACTCATGCCTG 59.609 45.833 0.00 0.00 40.39 4.85
3167 3971 3.126000 GTCTTTGAGTAACTCATGCCTGC 59.874 47.826 0.00 0.00 40.39 4.85
3230 4034 6.373779 CACCACACTAAAAGCAGAATGTAAG 58.626 40.000 0.00 0.00 39.31 2.34
3231 4035 5.473504 ACCACACTAAAAGCAGAATGTAAGG 59.526 40.000 0.00 0.00 39.31 2.69
3232 4036 5.393962 CACACTAAAAGCAGAATGTAAGGC 58.606 41.667 0.00 0.00 39.31 4.35
3233 4037 4.459337 ACACTAAAAGCAGAATGTAAGGCC 59.541 41.667 0.00 0.00 39.31 5.19
3234 4038 4.458989 CACTAAAAGCAGAATGTAAGGCCA 59.541 41.667 5.01 0.00 39.31 5.36
3235 4039 5.048083 CACTAAAAGCAGAATGTAAGGCCAA 60.048 40.000 5.01 0.00 39.31 4.52
3236 4040 3.942130 AAAGCAGAATGTAAGGCCAAC 57.058 42.857 5.01 2.84 39.31 3.77
3237 4041 2.887151 AGCAGAATGTAAGGCCAACT 57.113 45.000 5.01 0.00 39.31 3.16
3238 4042 2.716217 AGCAGAATGTAAGGCCAACTC 58.284 47.619 5.01 0.00 39.31 3.01
3239 4043 1.745653 GCAGAATGTAAGGCCAACTCC 59.254 52.381 5.01 0.00 39.31 3.85
3240 4044 2.879756 GCAGAATGTAAGGCCAACTCCA 60.880 50.000 5.01 0.00 39.31 3.86
3241 4045 2.749621 CAGAATGTAAGGCCAACTCCAC 59.250 50.000 5.01 0.00 0.00 4.02
3242 4046 2.092323 GAATGTAAGGCCAACTCCACC 58.908 52.381 5.01 0.00 0.00 4.61
3243 4047 0.035439 ATGTAAGGCCAACTCCACCG 60.035 55.000 5.01 0.00 0.00 4.94
3244 4048 2.038837 GTAAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 0.00 5.68
3245 4049 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
3250 4054 3.554692 CAACTCCACCGCGCGATC 61.555 66.667 34.63 0.00 0.00 3.69
3251 4055 4.814294 AACTCCACCGCGCGATCC 62.814 66.667 34.63 0.00 0.00 3.36
3253 4057 3.592814 CTCCACCGCGCGATCCTA 61.593 66.667 34.63 11.52 0.00 2.94
3254 4058 2.910479 TCCACCGCGCGATCCTAT 60.910 61.111 34.63 6.07 0.00 2.57
3255 4059 2.430921 CCACCGCGCGATCCTATC 60.431 66.667 34.63 0.00 0.00 2.08
3256 4060 2.430921 CACCGCGCGATCCTATCC 60.431 66.667 34.63 0.00 0.00 2.59
3257 4061 2.597805 ACCGCGCGATCCTATCCT 60.598 61.111 34.63 0.00 0.00 3.24
3258 4062 2.126307 CCGCGCGATCCTATCCTG 60.126 66.667 34.63 6.11 0.00 3.86
3259 4063 2.645567 CGCGCGATCCTATCCTGT 59.354 61.111 28.94 0.00 0.00 4.00
3260 4064 1.442857 CGCGCGATCCTATCCTGTC 60.443 63.158 28.94 0.00 0.00 3.51
3261 4065 1.080434 GCGCGATCCTATCCTGTCC 60.080 63.158 12.10 0.00 0.00 4.02
3262 4066 1.210413 CGCGATCCTATCCTGTCCG 59.790 63.158 0.00 0.00 0.00 4.79
3263 4067 1.587054 GCGATCCTATCCTGTCCGG 59.413 63.158 0.00 0.00 0.00 5.14
3264 4068 1.587054 CGATCCTATCCTGTCCGGC 59.413 63.158 0.00 0.00 0.00 6.13
3265 4069 1.878656 CGATCCTATCCTGTCCGGCC 61.879 65.000 0.00 0.00 0.00 6.13
3266 4070 1.536662 ATCCTATCCTGTCCGGCCC 60.537 63.158 0.00 0.00 0.00 5.80
3267 4071 3.242291 CCTATCCTGTCCGGCCCC 61.242 72.222 0.00 0.00 0.00 5.80
3268 4072 3.616721 CTATCCTGTCCGGCCCCG 61.617 72.222 0.00 0.00 39.44 5.73
3269 4073 4.468769 TATCCTGTCCGGCCCCGT 62.469 66.667 5.93 0.00 37.81 5.28
3278 4082 2.816520 CGGCCCCGTCCGTTTAAG 60.817 66.667 0.00 0.00 44.18 1.85
3279 4083 2.437180 GGCCCCGTCCGTTTAAGG 60.437 66.667 0.00 0.00 0.00 2.69
3280 4084 2.348620 GCCCCGTCCGTTTAAGGT 59.651 61.111 0.00 0.00 0.00 3.50
3281 4085 1.596408 GCCCCGTCCGTTTAAGGTA 59.404 57.895 0.00 0.00 0.00 3.08
3282 4086 0.036483 GCCCCGTCCGTTTAAGGTAA 60.036 55.000 0.00 0.00 0.00 2.85
3283 4087 1.610363 GCCCCGTCCGTTTAAGGTAAA 60.610 52.381 0.00 0.00 0.00 2.01
3284 4088 2.777094 CCCCGTCCGTTTAAGGTAAAA 58.223 47.619 0.00 0.00 0.00 1.52
3285 4089 2.743664 CCCCGTCCGTTTAAGGTAAAAG 59.256 50.000 0.00 0.00 0.00 2.27
3286 4090 2.743664 CCCGTCCGTTTAAGGTAAAAGG 59.256 50.000 6.42 6.42 45.05 3.11
3287 4091 2.743664 CCGTCCGTTTAAGGTAAAAGGG 59.256 50.000 11.25 5.95 44.21 3.95
3288 4092 3.556843 CCGTCCGTTTAAGGTAAAAGGGA 60.557 47.826 11.25 6.65 46.05 4.20
3290 4094 4.703379 TCCGTTTAAGGTAAAAGGGACA 57.297 40.909 11.25 0.00 44.38 4.02
3291 4095 5.046288 TCCGTTTAAGGTAAAAGGGACAA 57.954 39.130 11.25 0.00 44.38 3.18
3292 4096 5.444176 TCCGTTTAAGGTAAAAGGGACAAA 58.556 37.500 11.25 0.00 44.38 2.83
3293 4097 5.890419 TCCGTTTAAGGTAAAAGGGACAAAA 59.110 36.000 11.25 0.00 44.38 2.44
3294 4098 6.379417 TCCGTTTAAGGTAAAAGGGACAAAAA 59.621 34.615 11.25 0.00 44.38 1.94
3327 4131 4.058797 CGGGAGCAAACGGACTTT 57.941 55.556 0.00 0.00 0.00 2.66
3328 4132 2.327228 CGGGAGCAAACGGACTTTT 58.673 52.632 0.00 0.00 0.00 2.27
3329 4133 0.040425 CGGGAGCAAACGGACTTTTG 60.040 55.000 0.00 0.00 39.15 2.44
3330 4134 1.029681 GGGAGCAAACGGACTTTTGT 58.970 50.000 3.71 0.00 38.51 2.83
3331 4135 1.407618 GGGAGCAAACGGACTTTTGTT 59.592 47.619 3.71 0.00 38.51 2.83
3332 4136 2.543031 GGGAGCAAACGGACTTTTGTTC 60.543 50.000 8.80 8.80 42.71 3.18
3339 4143 2.468532 CGGACTTTTGTTCGCTTTGT 57.531 45.000 0.00 0.00 45.13 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.019094 CCCGTTTTCTGAATTTTCTTTACGTAT 58.981 33.333 0.00 0.00 0.00 3.06
6 7 6.203647 CCCGTTTTCTGAATTTTCTTTACGT 58.796 36.000 0.00 0.00 0.00 3.57
7 8 5.116528 GCCCGTTTTCTGAATTTTCTTTACG 59.883 40.000 0.00 0.00 0.00 3.18
8 9 5.404366 GGCCCGTTTTCTGAATTTTCTTTAC 59.596 40.000 0.00 0.00 0.00 2.01
9 10 5.303333 AGGCCCGTTTTCTGAATTTTCTTTA 59.697 36.000 0.00 0.00 0.00 1.85
10 11 4.100963 AGGCCCGTTTTCTGAATTTTCTTT 59.899 37.500 0.00 0.00 0.00 2.52
11 12 3.641436 AGGCCCGTTTTCTGAATTTTCTT 59.359 39.130 0.00 0.00 0.00 2.52
12 13 3.230976 AGGCCCGTTTTCTGAATTTTCT 58.769 40.909 0.00 0.00 0.00 2.52
13 14 3.660501 AGGCCCGTTTTCTGAATTTTC 57.339 42.857 0.00 0.00 0.00 2.29
14 15 3.509967 CCTAGGCCCGTTTTCTGAATTTT 59.490 43.478 0.00 0.00 0.00 1.82
15 16 3.089284 CCTAGGCCCGTTTTCTGAATTT 58.911 45.455 0.00 0.00 0.00 1.82
16 17 2.041216 ACCTAGGCCCGTTTTCTGAATT 59.959 45.455 9.30 0.00 0.00 2.17
17 18 1.633945 ACCTAGGCCCGTTTTCTGAAT 59.366 47.619 9.30 0.00 0.00 2.57
18 19 1.061546 ACCTAGGCCCGTTTTCTGAA 58.938 50.000 9.30 0.00 0.00 3.02
19 20 0.323629 CACCTAGGCCCGTTTTCTGA 59.676 55.000 9.30 0.00 0.00 3.27
20 21 1.305930 GCACCTAGGCCCGTTTTCTG 61.306 60.000 9.30 0.00 0.00 3.02
21 22 1.002502 GCACCTAGGCCCGTTTTCT 60.003 57.895 9.30 0.00 0.00 2.52
22 23 0.891904 TTGCACCTAGGCCCGTTTTC 60.892 55.000 9.30 0.00 0.00 2.29
23 24 0.251608 ATTGCACCTAGGCCCGTTTT 60.252 50.000 9.30 0.00 0.00 2.43
24 25 0.965363 CATTGCACCTAGGCCCGTTT 60.965 55.000 9.30 0.00 0.00 3.60
25 26 1.378514 CATTGCACCTAGGCCCGTT 60.379 57.895 9.30 0.00 0.00 4.44
26 27 1.847798 TTCATTGCACCTAGGCCCGT 61.848 55.000 9.30 0.00 0.00 5.28
27 28 0.466189 ATTCATTGCACCTAGGCCCG 60.466 55.000 9.30 0.00 0.00 6.13
28 29 1.322442 GATTCATTGCACCTAGGCCC 58.678 55.000 9.30 0.00 0.00 5.80
29 30 1.322442 GGATTCATTGCACCTAGGCC 58.678 55.000 9.30 0.00 0.00 5.19
30 31 2.057137 TGGATTCATTGCACCTAGGC 57.943 50.000 9.30 0.00 0.00 3.93
31 32 2.954318 CCTTGGATTCATTGCACCTAGG 59.046 50.000 7.41 7.41 38.53 3.02
32 33 2.360165 GCCTTGGATTCATTGCACCTAG 59.640 50.000 0.00 0.00 0.00 3.02
33 34 2.025037 AGCCTTGGATTCATTGCACCTA 60.025 45.455 0.00 0.00 0.00 3.08
34 35 1.188863 GCCTTGGATTCATTGCACCT 58.811 50.000 0.00 0.00 0.00 4.00
35 36 1.188863 AGCCTTGGATTCATTGCACC 58.811 50.000 0.00 0.00 0.00 5.01
36 37 2.733227 CGAAGCCTTGGATTCATTGCAC 60.733 50.000 16.42 0.00 0.00 4.57
37 38 1.473677 CGAAGCCTTGGATTCATTGCA 59.526 47.619 16.42 0.00 0.00 4.08
38 39 1.474077 ACGAAGCCTTGGATTCATTGC 59.526 47.619 16.42 0.00 0.00 3.56
39 40 4.155826 TGTTACGAAGCCTTGGATTCATTG 59.844 41.667 16.42 4.42 0.00 2.82
40 41 4.331968 TGTTACGAAGCCTTGGATTCATT 58.668 39.130 16.42 6.30 0.00 2.57
41 42 3.950397 TGTTACGAAGCCTTGGATTCAT 58.050 40.909 16.42 5.07 0.00 2.57
42 43 3.410631 TGTTACGAAGCCTTGGATTCA 57.589 42.857 16.42 0.00 0.00 2.57
43 44 4.965119 AATGTTACGAAGCCTTGGATTC 57.035 40.909 7.52 7.52 0.00 2.52
44 45 5.250200 TGTAATGTTACGAAGCCTTGGATT 58.750 37.500 0.00 0.00 36.45 3.01
45 46 4.839121 TGTAATGTTACGAAGCCTTGGAT 58.161 39.130 0.00 0.00 36.45 3.41
46 47 4.274602 TGTAATGTTACGAAGCCTTGGA 57.725 40.909 0.00 0.00 36.45 3.53
47 48 4.876107 AGATGTAATGTTACGAAGCCTTGG 59.124 41.667 0.00 0.00 36.45 3.61
48 49 6.422776 AAGATGTAATGTTACGAAGCCTTG 57.577 37.500 0.00 0.00 36.45 3.61
49 50 6.183360 CGAAAGATGTAATGTTACGAAGCCTT 60.183 38.462 0.00 0.00 36.45 4.35
50 51 5.291128 CGAAAGATGTAATGTTACGAAGCCT 59.709 40.000 0.00 0.00 36.45 4.58
51 52 5.490213 CGAAAGATGTAATGTTACGAAGCC 58.510 41.667 0.00 0.00 36.45 4.35
52 53 4.956184 GCGAAAGATGTAATGTTACGAAGC 59.044 41.667 0.00 0.00 36.45 3.86
53 54 5.291128 AGGCGAAAGATGTAATGTTACGAAG 59.709 40.000 0.00 0.00 36.45 3.79
54 55 5.172934 AGGCGAAAGATGTAATGTTACGAA 58.827 37.500 0.00 0.00 36.45 3.85
55 56 4.751060 AGGCGAAAGATGTAATGTTACGA 58.249 39.130 0.00 0.00 36.45 3.43
56 57 4.804139 AGAGGCGAAAGATGTAATGTTACG 59.196 41.667 0.00 0.00 36.45 3.18
57 58 7.167801 GTCTAGAGGCGAAAGATGTAATGTTAC 59.832 40.741 0.00 0.00 0.00 2.50
58 59 7.068348 AGTCTAGAGGCGAAAGATGTAATGTTA 59.932 37.037 0.00 0.00 0.00 2.41
59 60 6.043411 GTCTAGAGGCGAAAGATGTAATGTT 58.957 40.000 0.00 0.00 0.00 2.71
60 61 5.361285 AGTCTAGAGGCGAAAGATGTAATGT 59.639 40.000 0.00 0.00 0.00 2.71
61 62 5.837437 AGTCTAGAGGCGAAAGATGTAATG 58.163 41.667 0.00 0.00 0.00 1.90
62 63 6.999272 TCTAGTCTAGAGGCGAAAGATGTAAT 59.001 38.462 5.41 0.00 0.00 1.89
63 64 6.260493 GTCTAGTCTAGAGGCGAAAGATGTAA 59.740 42.308 9.97 0.00 35.04 2.41
64 65 5.759273 GTCTAGTCTAGAGGCGAAAGATGTA 59.241 44.000 9.97 0.00 35.04 2.29
65 66 4.577283 GTCTAGTCTAGAGGCGAAAGATGT 59.423 45.833 9.97 0.00 35.04 3.06
66 67 4.576873 TGTCTAGTCTAGAGGCGAAAGATG 59.423 45.833 9.97 0.00 35.04 2.90
67 68 4.783055 TGTCTAGTCTAGAGGCGAAAGAT 58.217 43.478 9.97 0.00 35.04 2.40
68 69 4.217836 TGTCTAGTCTAGAGGCGAAAGA 57.782 45.455 9.97 0.00 35.04 2.52
69 70 4.201970 CCTTGTCTAGTCTAGAGGCGAAAG 60.202 50.000 9.97 8.80 35.04 2.62
70 71 3.695060 CCTTGTCTAGTCTAGAGGCGAAA 59.305 47.826 9.97 0.56 35.04 3.46
71 72 3.054582 TCCTTGTCTAGTCTAGAGGCGAA 60.055 47.826 9.97 1.15 35.04 4.70
72 73 2.504585 TCCTTGTCTAGTCTAGAGGCGA 59.495 50.000 9.97 1.55 35.04 5.54
73 74 2.920524 TCCTTGTCTAGTCTAGAGGCG 58.079 52.381 9.97 1.76 35.04 5.52
74 75 4.017808 TGTTCCTTGTCTAGTCTAGAGGC 58.982 47.826 9.97 0.49 35.04 4.70
75 76 5.010933 TGTGTTCCTTGTCTAGTCTAGAGG 58.989 45.833 9.97 8.35 35.04 3.69
76 77 5.391097 CGTGTGTTCCTTGTCTAGTCTAGAG 60.391 48.000 9.97 0.00 35.04 2.43
77 78 4.454847 CGTGTGTTCCTTGTCTAGTCTAGA 59.545 45.833 5.41 5.41 0.00 2.43
78 79 4.379603 CCGTGTGTTCCTTGTCTAGTCTAG 60.380 50.000 0.00 0.00 0.00 2.43
79 80 3.504906 CCGTGTGTTCCTTGTCTAGTCTA 59.495 47.826 0.00 0.00 0.00 2.59
80 81 2.296471 CCGTGTGTTCCTTGTCTAGTCT 59.704 50.000 0.00 0.00 0.00 3.24
81 82 2.295349 TCCGTGTGTTCCTTGTCTAGTC 59.705 50.000 0.00 0.00 0.00 2.59
82 83 2.296471 CTCCGTGTGTTCCTTGTCTAGT 59.704 50.000 0.00 0.00 0.00 2.57
83 84 2.557056 TCTCCGTGTGTTCCTTGTCTAG 59.443 50.000 0.00 0.00 0.00 2.43
84 85 2.589720 TCTCCGTGTGTTCCTTGTCTA 58.410 47.619 0.00 0.00 0.00 2.59
85 86 1.410004 TCTCCGTGTGTTCCTTGTCT 58.590 50.000 0.00 0.00 0.00 3.41
86 87 2.135933 CTTCTCCGTGTGTTCCTTGTC 58.864 52.381 0.00 0.00 0.00 3.18
87 88 1.760613 TCTTCTCCGTGTGTTCCTTGT 59.239 47.619 0.00 0.00 0.00 3.16
88 89 2.135933 GTCTTCTCCGTGTGTTCCTTG 58.864 52.381 0.00 0.00 0.00 3.61
89 90 1.760613 TGTCTTCTCCGTGTGTTCCTT 59.239 47.619 0.00 0.00 0.00 3.36
90 91 1.410004 TGTCTTCTCCGTGTGTTCCT 58.590 50.000 0.00 0.00 0.00 3.36
91 92 2.457366 ATGTCTTCTCCGTGTGTTCC 57.543 50.000 0.00 0.00 0.00 3.62
92 93 3.909430 TGTATGTCTTCTCCGTGTGTTC 58.091 45.455 0.00 0.00 0.00 3.18
93 94 3.321111 ACTGTATGTCTTCTCCGTGTGTT 59.679 43.478 0.00 0.00 0.00 3.32
94 95 2.891580 ACTGTATGTCTTCTCCGTGTGT 59.108 45.455 0.00 0.00 0.00 3.72
95 96 3.577649 ACTGTATGTCTTCTCCGTGTG 57.422 47.619 0.00 0.00 0.00 3.82
96 97 4.333690 AGTACTGTATGTCTTCTCCGTGT 58.666 43.478 0.00 0.00 0.00 4.49
97 98 4.966965 AGTACTGTATGTCTTCTCCGTG 57.033 45.455 0.00 0.00 0.00 4.94
98 99 4.569966 CGTAGTACTGTATGTCTTCTCCGT 59.430 45.833 5.39 0.00 0.00 4.69
99 100 4.569966 ACGTAGTACTGTATGTCTTCTCCG 59.430 45.833 5.39 0.00 41.94 4.63
121 122 7.496704 TCAACATTTTCTCATACGTACGTAC 57.503 36.000 28.99 15.90 33.01 3.67
122 123 7.433131 GGATCAACATTTTCTCATACGTACGTA 59.567 37.037 28.62 28.62 34.87 3.57
123 124 6.255020 GGATCAACATTTTCTCATACGTACGT 59.745 38.462 25.98 25.98 0.00 3.57
124 125 6.475727 AGGATCAACATTTTCTCATACGTACG 59.524 38.462 15.01 15.01 0.00 3.67
125 126 7.772332 AGGATCAACATTTTCTCATACGTAC 57.228 36.000 0.00 0.00 0.00 3.67
126 127 8.471609 TGTAGGATCAACATTTTCTCATACGTA 58.528 33.333 0.00 0.00 0.00 3.57
127 128 7.277981 GTGTAGGATCAACATTTTCTCATACGT 59.722 37.037 0.00 0.00 0.00 3.57
128 129 7.254455 GGTGTAGGATCAACATTTTCTCATACG 60.254 40.741 3.73 0.00 0.00 3.06
129 130 7.552687 TGGTGTAGGATCAACATTTTCTCATAC 59.447 37.037 3.73 0.00 29.48 2.39
130 131 7.552687 GTGGTGTAGGATCAACATTTTCTCATA 59.447 37.037 3.73 0.00 37.37 2.15
136 137 4.086457 GGGTGGTGTAGGATCAACATTTT 58.914 43.478 3.73 0.00 37.37 1.82
138 139 2.647299 TGGGTGGTGTAGGATCAACATT 59.353 45.455 3.73 0.00 37.37 2.71
144 145 1.477553 TACGTGGGTGGTGTAGGATC 58.522 55.000 0.00 0.00 0.00 3.36
153 154 4.142337 GGTATTTCCAATTTACGTGGGTGG 60.142 45.833 0.00 0.22 36.73 4.61
161 162 3.127376 ACACGGCGGTATTTCCAATTTAC 59.873 43.478 13.24 0.00 35.57 2.01
163 164 2.164338 ACACGGCGGTATTTCCAATTT 58.836 42.857 13.24 0.00 35.57 1.82
172 173 1.207570 TGATTTGGTACACGGCGGTAT 59.792 47.619 13.24 0.00 39.29 2.73
186 187 5.177327 GGTGCCAAAAATGTACAGTGATTTG 59.823 40.000 11.64 11.64 0.00 2.32
211 212 3.636231 TCACTTCACCCCTGGCCG 61.636 66.667 0.00 0.00 0.00 6.13
212 213 2.034221 GTCACTTCACCCCTGGCC 59.966 66.667 0.00 0.00 0.00 5.36
213 214 2.358737 CGTCACTTCACCCCTGGC 60.359 66.667 0.00 0.00 0.00 4.85
214 215 2.347490 CCGTCACTTCACCCCTGG 59.653 66.667 0.00 0.00 0.00 4.45
215 216 2.347490 CCCGTCACTTCACCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
218 219 2.240162 CTAGCCCCGTCACTTCACCC 62.240 65.000 0.00 0.00 0.00 4.61
219 220 1.218316 CTAGCCCCGTCACTTCACC 59.782 63.158 0.00 0.00 0.00 4.02
233 236 2.473235 GCTTCAATACTACAGCGCTAGC 59.527 50.000 10.99 7.80 45.58 3.42
241 244 3.630769 AGGACGATCGCTTCAATACTACA 59.369 43.478 16.60 0.00 0.00 2.74
242 245 4.023878 AGAGGACGATCGCTTCAATACTAC 60.024 45.833 16.60 0.00 0.00 2.73
243 246 4.023963 CAGAGGACGATCGCTTCAATACTA 60.024 45.833 16.60 0.00 0.00 1.82
276 282 2.965462 GGCCCTACGTACGCATGC 60.965 66.667 16.72 7.91 0.00 4.06
280 286 4.217159 CCCTGGCCCTACGTACGC 62.217 72.222 16.72 0.00 0.00 4.42
284 290 4.764771 TACGCCCTGGCCCTACGT 62.765 66.667 13.57 13.57 40.53 3.57
285 291 2.319890 AAATACGCCCTGGCCCTACG 62.320 60.000 0.00 0.92 37.98 3.51
286 292 0.818040 CAAATACGCCCTGGCCCTAC 60.818 60.000 0.00 0.00 37.98 3.18
287 293 1.276140 ACAAATACGCCCTGGCCCTA 61.276 55.000 0.00 0.00 37.98 3.53
288 294 1.276140 TACAAATACGCCCTGGCCCT 61.276 55.000 0.00 0.00 37.98 5.19
289 295 1.099295 GTACAAATACGCCCTGGCCC 61.099 60.000 0.00 0.00 37.98 5.80
290 296 2.400911 GTACAAATACGCCCTGGCC 58.599 57.895 1.86 0.00 37.98 5.36
315 321 0.109226 GTGTACTGTGCTCGTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
331 337 3.128589 AGACGCAACAATTTTCACAGTGT 59.871 39.130 0.00 0.00 0.00 3.55
332 338 3.483196 CAGACGCAACAATTTTCACAGTG 59.517 43.478 0.00 0.00 0.00 3.66
370 413 0.883370 GGGGTGTCAGACAACGGAAC 60.883 60.000 12.62 0.00 36.45 3.62
371 414 1.448497 GGGGTGTCAGACAACGGAA 59.552 57.895 12.62 0.00 36.45 4.30
372 415 2.513259 GGGGGTGTCAGACAACGGA 61.513 63.158 12.62 0.00 36.45 4.69
373 416 2.032071 GGGGGTGTCAGACAACGG 59.968 66.667 12.62 0.00 36.45 4.44
374 417 0.955428 CATGGGGGTGTCAGACAACG 60.955 60.000 12.62 0.00 36.45 4.10
375 418 0.400213 TCATGGGGGTGTCAGACAAC 59.600 55.000 10.46 10.46 34.36 3.32
376 419 1.144691 TTCATGGGGGTGTCAGACAA 58.855 50.000 4.32 0.00 0.00 3.18
421 464 0.031857 TGAAATGCAGCAACCAACGG 59.968 50.000 0.00 0.00 0.00 4.44
462 505 5.421374 TGCATCAAAATCAGAGAGAGAGAGA 59.579 40.000 0.00 0.00 0.00 3.10
463 506 5.662456 TGCATCAAAATCAGAGAGAGAGAG 58.338 41.667 0.00 0.00 0.00 3.20
464 507 5.672421 TGCATCAAAATCAGAGAGAGAGA 57.328 39.130 0.00 0.00 0.00 3.10
491 534 0.386858 TACTCTGCGTGCGTCACTTC 60.387 55.000 8.07 1.87 31.34 3.01
505 548 6.499350 CCACTCTATACTCCTACTCCTACTCT 59.501 46.154 0.00 0.00 0.00 3.24
506 549 6.270695 ACCACTCTATACTCCTACTCCTACTC 59.729 46.154 0.00 0.00 0.00 2.59
507 550 6.043474 CACCACTCTATACTCCTACTCCTACT 59.957 46.154 0.00 0.00 0.00 2.57
508 551 6.232692 CACCACTCTATACTCCTACTCCTAC 58.767 48.000 0.00 0.00 0.00 3.18
509 552 5.310068 CCACCACTCTATACTCCTACTCCTA 59.690 48.000 0.00 0.00 0.00 2.94
510 553 4.105057 CCACCACTCTATACTCCTACTCCT 59.895 50.000 0.00 0.00 0.00 3.69
511 554 4.141205 ACCACCACTCTATACTCCTACTCC 60.141 50.000 0.00 0.00 0.00 3.85
512 555 5.051409 ACCACCACTCTATACTCCTACTC 57.949 47.826 0.00 0.00 0.00 2.59
513 556 5.073417 CCTACCACCACTCTATACTCCTACT 59.927 48.000 0.00 0.00 0.00 2.57
514 557 5.315348 CCTACCACCACTCTATACTCCTAC 58.685 50.000 0.00 0.00 0.00 3.18
515 558 4.353191 CCCTACCACCACTCTATACTCCTA 59.647 50.000 0.00 0.00 0.00 2.94
519 562 3.140519 CCTCCCTACCACCACTCTATACT 59.859 52.174 0.00 0.00 0.00 2.12
542 585 0.260523 ACTGCTCCTACTCCTCCCTC 59.739 60.000 0.00 0.00 0.00 4.30
543 586 1.215924 GTACTGCTCCTACTCCTCCCT 59.784 57.143 0.00 0.00 0.00 4.20
544 587 1.063867 TGTACTGCTCCTACTCCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
545 588 2.303175 CTGTACTGCTCCTACTCCTCC 58.697 57.143 0.00 0.00 0.00 4.30
546 589 2.685897 CACTGTACTGCTCCTACTCCTC 59.314 54.545 0.00 0.00 0.00 3.71
547 590 2.729194 CACTGTACTGCTCCTACTCCT 58.271 52.381 0.00 0.00 0.00 3.69
548 591 1.135333 GCACTGTACTGCTCCTACTCC 59.865 57.143 0.00 0.00 34.06 3.85
549 592 1.202200 CGCACTGTACTGCTCCTACTC 60.202 57.143 5.66 0.00 34.77 2.59
592 635 3.217743 GCTAGGGGACGGACGGAG 61.218 72.222 0.00 0.00 0.00 4.63
593 636 3.711059 GAGCTAGGGGACGGACGGA 62.711 68.421 0.00 0.00 0.00 4.69
622 665 3.151022 GCGGAGGGAGGGTGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
641 684 1.348775 GGGGGAGTGATGAAGAGGGG 61.349 65.000 0.00 0.00 0.00 4.79
722 1371 3.896888 CACCAGCAGGAATATCTCTCTCT 59.103 47.826 0.35 0.00 38.69 3.10
723 1372 3.006752 CCACCAGCAGGAATATCTCTCTC 59.993 52.174 0.35 0.00 38.69 3.20
724 1373 2.971330 CCACCAGCAGGAATATCTCTCT 59.029 50.000 0.35 0.00 38.69 3.10
725 1374 2.968574 TCCACCAGCAGGAATATCTCTC 59.031 50.000 0.35 0.00 38.69 3.20
726 1375 2.971330 CTCCACCAGCAGGAATATCTCT 59.029 50.000 0.35 0.00 38.69 3.10
767 1416 1.382420 CCTGCTCCCTGCTACTCCT 60.382 63.158 0.00 0.00 43.37 3.69
769 1418 2.503546 GCCTGCTCCCTGCTACTC 59.496 66.667 0.00 0.00 43.37 2.59
792 1441 3.753294 TCTCGTTTTCCTCTTCTGCTT 57.247 42.857 0.00 0.00 0.00 3.91
797 1446 4.377897 TCACCTTTCTCGTTTTCCTCTTC 58.622 43.478 0.00 0.00 0.00 2.87
808 1457 2.125512 CCGCCCTCACCTTTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
824 1473 4.586235 ACCAGCACCAGCACCACC 62.586 66.667 0.00 0.00 45.49 4.61
825 1474 3.289834 CACCAGCACCAGCACCAC 61.290 66.667 0.00 0.00 45.49 4.16
826 1475 2.832778 ATCACCAGCACCAGCACCA 61.833 57.895 0.00 0.00 45.49 4.17
827 1476 2.034687 ATCACCAGCACCAGCACC 59.965 61.111 0.00 0.00 45.49 5.01
828 1477 2.338015 CCATCACCAGCACCAGCAC 61.338 63.158 0.00 0.00 45.49 4.40
829 1478 2.034532 CCATCACCAGCACCAGCA 59.965 61.111 0.00 0.00 45.49 4.41
830 1479 3.446570 GCCATCACCAGCACCAGC 61.447 66.667 0.00 0.00 42.56 4.85
831 1480 3.129502 CGCCATCACCAGCACCAG 61.130 66.667 0.00 0.00 0.00 4.00
832 1481 4.720902 CCGCCATCACCAGCACCA 62.721 66.667 0.00 0.00 0.00 4.17
833 1482 4.722700 ACCGCCATCACCAGCACC 62.723 66.667 0.00 0.00 0.00 5.01
834 1483 3.434319 CACCGCCATCACCAGCAC 61.434 66.667 0.00 0.00 0.00 4.40
835 1484 4.720902 CCACCGCCATCACCAGCA 62.721 66.667 0.00 0.00 0.00 4.41
837 1486 4.802051 CCCCACCGCCATCACCAG 62.802 72.222 0.00 0.00 0.00 4.00
858 1513 0.586802 AAAGAAACGACGGAAGCAGC 59.413 50.000 0.00 0.00 0.00 5.25
865 1520 4.531659 ACAAGAAAGAAAGAAACGACGG 57.468 40.909 0.00 0.00 0.00 4.79
881 1536 1.608025 GCGTCACTCCCATCAACAAGA 60.608 52.381 0.00 0.00 0.00 3.02
883 1538 0.605319 GGCGTCACTCCCATCAACAA 60.605 55.000 0.00 0.00 0.00 2.83
884 1539 1.003839 GGCGTCACTCCCATCAACA 60.004 57.895 0.00 0.00 0.00 3.33
885 1540 2.100631 CGGCGTCACTCCCATCAAC 61.101 63.158 0.00 0.00 0.00 3.18
886 1541 2.264480 CGGCGTCACTCCCATCAA 59.736 61.111 0.00 0.00 0.00 2.57
887 1542 3.770040 CCGGCGTCACTCCCATCA 61.770 66.667 6.01 0.00 0.00 3.07
914 1569 0.534203 ACAAATCCGCAACACGTCCT 60.534 50.000 0.00 0.00 41.42 3.85
915 1570 0.385473 CACAAATCCGCAACACGTCC 60.385 55.000 0.00 0.00 41.42 4.79
916 1571 0.584396 TCACAAATCCGCAACACGTC 59.416 50.000 0.00 0.00 41.42 4.34
917 1572 1.196808 GATCACAAATCCGCAACACGT 59.803 47.619 0.00 0.00 41.42 4.49
943 1598 5.007626 TGTTTGAGATTCAAGGACACGAAAG 59.992 40.000 0.00 0.00 37.70 2.62
946 1601 4.066646 TGTTTGAGATTCAAGGACACGA 57.933 40.909 0.00 0.00 37.70 4.35
947 1602 4.811555 TTGTTTGAGATTCAAGGACACG 57.188 40.909 0.00 0.00 37.70 4.49
948 1603 5.335976 GGGATTGTTTGAGATTCAAGGACAC 60.336 44.000 0.00 0.00 37.70 3.67
949 1604 4.766891 GGGATTGTTTGAGATTCAAGGACA 59.233 41.667 0.00 0.00 37.70 4.02
950 1605 4.158579 GGGGATTGTTTGAGATTCAAGGAC 59.841 45.833 0.00 0.00 37.70 3.85
953 1608 3.129287 CGGGGGATTGTTTGAGATTCAAG 59.871 47.826 0.00 0.00 37.70 3.02
955 1610 2.620367 CCGGGGGATTGTTTGAGATTCA 60.620 50.000 0.00 0.00 0.00 2.57
956 1611 2.024414 CCGGGGGATTGTTTGAGATTC 58.976 52.381 0.00 0.00 0.00 2.52
957 1612 1.357761 ACCGGGGGATTGTTTGAGATT 59.642 47.619 6.32 0.00 0.00 2.40
958 1613 0.999712 ACCGGGGGATTGTTTGAGAT 59.000 50.000 6.32 0.00 0.00 2.75
959 1614 0.774908 AACCGGGGGATTGTTTGAGA 59.225 50.000 6.32 0.00 0.00 3.27
960 1615 1.544246 GAAACCGGGGGATTGTTTGAG 59.456 52.381 6.32 0.00 32.67 3.02
961 1616 1.133450 TGAAACCGGGGGATTGTTTGA 60.133 47.619 6.32 0.00 32.67 2.69
962 1617 1.272212 CTGAAACCGGGGGATTGTTTG 59.728 52.381 6.32 0.00 32.67 2.93
963 1618 1.627864 CTGAAACCGGGGGATTGTTT 58.372 50.000 6.32 0.00 35.06 2.83
964 1619 0.251608 CCTGAAACCGGGGGATTGTT 60.252 55.000 6.32 0.00 0.00 2.83
965 1620 1.382629 CCTGAAACCGGGGGATTGT 59.617 57.895 6.32 0.00 0.00 2.71
966 1621 2.052104 GCCTGAAACCGGGGGATTG 61.052 63.158 6.32 0.00 0.00 2.67
967 1622 2.359011 GCCTGAAACCGGGGGATT 59.641 61.111 6.32 0.00 0.00 3.01
1404 2074 4.528674 CAGGAGATGGTCTTGCCG 57.471 61.111 0.00 0.00 41.21 5.69
1475 2145 1.479709 CGGACCAGACTTGAGATCCT 58.520 55.000 0.00 0.00 0.00 3.24
1482 2152 2.266055 GCCTCCGGACCAGACTTG 59.734 66.667 0.00 0.00 0.00 3.16
1759 2429 1.003718 CTCCGTCCTTGGGTTCCAC 60.004 63.158 0.00 0.00 30.78 4.02
1863 2533 1.018226 CCTCCAGCTTCTTCGTGCAG 61.018 60.000 0.00 0.00 0.00 4.41
1881 2551 4.124970 GGTAGATGTAAATGTCGTTCCCC 58.875 47.826 0.00 0.00 0.00 4.81
1951 2621 4.938226 GGTTGGATAGACTGTTCTTTCAGG 59.062 45.833 0.00 0.00 39.48 3.86
1965 2644 3.317711 TGCCGCAATTATTGGTTGGATAG 59.682 43.478 7.08 0.00 0.00 2.08
1990 2669 0.106708 GGGATGCTCATAGGCGAACA 59.893 55.000 0.00 0.00 34.52 3.18
1991 2670 0.106708 TGGGATGCTCATAGGCGAAC 59.893 55.000 0.00 0.00 34.52 3.95
1993 2672 1.937191 TATGGGATGCTCATAGGCGA 58.063 50.000 0.00 0.00 34.52 5.54
1994 2673 2.996249 ATATGGGATGCTCATAGGCG 57.004 50.000 0.00 0.00 31.58 5.52
1995 2674 4.500499 AGAATATGGGATGCTCATAGGC 57.500 45.455 0.00 0.00 31.58 3.93
1996 2675 6.152323 CCAAAAGAATATGGGATGCTCATAGG 59.848 42.308 0.00 0.00 32.87 2.57
1997 2676 7.154435 CCAAAAGAATATGGGATGCTCATAG 57.846 40.000 0.00 0.00 32.87 2.23
2032 2729 5.424121 AGAAATGTTCCGAGTTTTCACAG 57.576 39.130 0.00 0.00 31.94 3.66
2068 2765 4.741676 CAGTTCAAGTGGCACTTCATTTTC 59.258 41.667 29.07 15.63 36.03 2.29
2078 2779 5.534278 TGTAATTCATTCAGTTCAAGTGGCA 59.466 36.000 0.00 0.00 0.00 4.92
2079 2780 5.858581 GTGTAATTCATTCAGTTCAAGTGGC 59.141 40.000 0.00 0.00 0.00 5.01
2081 2782 6.969366 TGGTGTAATTCATTCAGTTCAAGTG 58.031 36.000 0.00 0.00 0.00 3.16
2094 2795 7.639113 AAGAAAGAACAGTTGGTGTAATTCA 57.361 32.000 0.00 0.00 39.03 2.57
2096 2797 8.293699 AGAAAGAAAGAACAGTTGGTGTAATT 57.706 30.769 0.00 0.00 39.03 1.40
2097 2798 7.881775 AGAAAGAAAGAACAGTTGGTGTAAT 57.118 32.000 0.00 0.00 39.03 1.89
2098 2799 8.795842 TTAGAAAGAAAGAACAGTTGGTGTAA 57.204 30.769 0.00 0.00 39.03 2.41
2103 2887 6.377327 TGCTTAGAAAGAAAGAACAGTTGG 57.623 37.500 0.00 0.00 0.00 3.77
2155 2942 2.118228 TTGACGCACAACAAATCAGC 57.882 45.000 0.00 0.00 33.18 4.26
2169 2956 0.888736 TCCCCACTGCAATGTTGACG 60.889 55.000 0.00 0.00 0.00 4.35
2252 3039 4.511246 CCTCCCGTGGCCATGCAT 62.511 66.667 20.27 0.00 0.00 3.96
2517 3304 0.614294 TCTTCCTCGTCGACTCCTCT 59.386 55.000 14.70 0.00 0.00 3.69
2528 3315 2.202810 GCCGCTCCTTCTTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
2554 3341 0.874390 CCACAAGTGACAATGACCCG 59.126 55.000 0.94 0.00 0.00 5.28
2610 3397 1.205417 CAGGGCTGGTAAAAATGGCAG 59.795 52.381 0.00 0.00 0.00 4.85
2611 3398 1.265236 CAGGGCTGGTAAAAATGGCA 58.735 50.000 0.00 0.00 0.00 4.92
2612 3399 0.536724 CCAGGGCTGGTAAAAATGGC 59.463 55.000 0.00 0.00 45.53 4.40
2626 3413 0.323629 TGCGAGTAAGTTTCCCAGGG 59.676 55.000 0.00 0.00 0.00 4.45
2727 3519 1.748122 CGCAGGCAGCCTTGAGATT 60.748 57.895 12.86 0.00 41.38 2.40
2797 3589 0.667993 CCAGCAGGAGCAAACGAAAA 59.332 50.000 0.00 0.00 45.49 2.29
2801 3593 2.974489 CTGCCAGCAGGAGCAAACG 61.974 63.158 11.91 0.00 45.49 3.60
2802 3594 2.960170 CTGCCAGCAGGAGCAAAC 59.040 61.111 11.91 0.00 45.49 2.93
2861 3665 5.055144 GCAGCTCAATGTCATTATCTCTCA 58.945 41.667 0.00 0.00 0.00 3.27
2916 3720 7.480810 TGCTCAAAGTAAAAGAAAAGAGGAAC 58.519 34.615 0.00 0.00 0.00 3.62
2977 3781 0.738975 GTCCATCATCGTCGTCCTCA 59.261 55.000 0.00 0.00 0.00 3.86
2978 3782 0.317103 CGTCCATCATCGTCGTCCTC 60.317 60.000 0.00 0.00 0.00 3.71
2979 3783 1.725557 CCGTCCATCATCGTCGTCCT 61.726 60.000 0.00 0.00 0.00 3.85
2980 3784 1.299165 CCGTCCATCATCGTCGTCC 60.299 63.158 0.00 0.00 0.00 4.79
3007 3811 5.934625 GGTCAGTTAAACACTCATCATCACT 59.065 40.000 0.00 0.00 30.92 3.41
3050 3854 5.712152 AAAAGATGCCTTTAGTTCTGGTG 57.288 39.130 0.00 0.00 41.46 4.17
3053 3857 6.349694 GGAGGAAAAAGATGCCTTTAGTTCTG 60.350 42.308 0.00 0.00 41.46 3.02
3126 3930 2.202987 GCAGTGGGAGGCATCTCG 60.203 66.667 0.00 0.00 40.85 4.04
3133 3937 0.397941 TCAAAGACTGCAGTGGGAGG 59.602 55.000 27.27 9.86 36.68 4.30
3138 3942 4.371786 TGAGTTACTCAAAGACTGCAGTG 58.628 43.478 27.27 11.33 37.57 3.66
3139 3943 4.672587 TGAGTTACTCAAAGACTGCAGT 57.327 40.909 21.88 21.88 37.57 4.40
3166 3970 0.322816 TTGATCACTTGGCTGGAGGC 60.323 55.000 0.00 0.00 41.50 4.70
3167 3971 1.004044 AGTTGATCACTTGGCTGGAGG 59.996 52.381 0.00 0.00 27.32 4.30
3233 4037 3.554692 GATCGCGCGGTGGAGTTG 61.555 66.667 31.69 0.00 0.00 3.16
3234 4038 4.814294 GGATCGCGCGGTGGAGTT 62.814 66.667 31.69 6.07 0.00 3.01
3236 4040 2.804368 GATAGGATCGCGCGGTGGAG 62.804 65.000 31.69 0.00 0.00 3.86
3237 4041 2.910479 ATAGGATCGCGCGGTGGA 60.910 61.111 31.69 11.34 0.00 4.02
3238 4042 2.430921 GATAGGATCGCGCGGTGG 60.431 66.667 31.69 0.71 0.00 4.61
3239 4043 2.430921 GGATAGGATCGCGCGGTG 60.431 66.667 31.69 1.17 0.00 4.94
3240 4044 2.597805 AGGATAGGATCGCGCGGT 60.598 61.111 31.69 26.40 0.00 5.68
3241 4045 2.126307 CAGGATAGGATCGCGCGG 60.126 66.667 31.69 11.75 0.00 6.46
3242 4046 1.442857 GACAGGATAGGATCGCGCG 60.443 63.158 26.76 26.76 0.00 6.86
3243 4047 1.080434 GGACAGGATAGGATCGCGC 60.080 63.158 0.00 0.00 0.00 6.86
3244 4048 1.210413 CGGACAGGATAGGATCGCG 59.790 63.158 0.00 0.00 0.00 5.87
3245 4049 1.587054 CCGGACAGGATAGGATCGC 59.413 63.158 0.00 0.00 45.00 4.58
3246 4050 1.587054 GCCGGACAGGATAGGATCG 59.413 63.158 5.05 0.00 45.00 3.69
3247 4051 1.545706 GGGCCGGACAGGATAGGATC 61.546 65.000 11.00 0.00 45.00 3.36
3248 4052 1.536662 GGGCCGGACAGGATAGGAT 60.537 63.158 11.00 0.00 45.00 3.24
3249 4053 2.122989 GGGCCGGACAGGATAGGA 60.123 66.667 11.00 0.00 45.00 2.94
3250 4054 3.242291 GGGGCCGGACAGGATAGG 61.242 72.222 11.00 0.00 45.00 2.57
3251 4055 3.616721 CGGGGCCGGACAGGATAG 61.617 72.222 11.00 0.00 45.00 2.08
3252 4056 4.468769 ACGGGGCCGGACAGGATA 62.469 66.667 18.95 0.00 45.00 2.59
3262 4066 1.898330 TACCTTAAACGGACGGGGCC 61.898 60.000 0.00 0.00 0.00 5.80
3263 4067 0.036483 TTACCTTAAACGGACGGGGC 60.036 55.000 0.00 0.00 0.00 5.80
3264 4068 2.470983 TTTACCTTAAACGGACGGGG 57.529 50.000 0.00 0.00 0.00 5.73
3265 4069 2.743664 CCTTTTACCTTAAACGGACGGG 59.256 50.000 0.00 0.00 38.85 5.28
3266 4070 2.743664 CCCTTTTACCTTAAACGGACGG 59.256 50.000 3.41 0.00 38.85 4.79
3267 4071 3.433274 GTCCCTTTTACCTTAAACGGACG 59.567 47.826 3.41 0.00 38.85 4.79
3268 4072 4.388485 TGTCCCTTTTACCTTAAACGGAC 58.612 43.478 12.94 12.94 42.34 4.79
3269 4073 4.703379 TGTCCCTTTTACCTTAAACGGA 57.297 40.909 3.41 0.00 38.85 4.69
3270 4074 5.771153 TTTGTCCCTTTTACCTTAAACGG 57.229 39.130 0.00 0.00 36.96 4.44
3308 4112 2.951475 AAAGTCCGTTTGCTCCCGCA 62.951 55.000 0.00 0.00 46.24 5.69
3309 4113 1.792118 AAAAGTCCGTTTGCTCCCGC 61.792 55.000 0.00 0.00 0.00 6.13
3310 4114 0.040425 CAAAAGTCCGTTTGCTCCCG 60.040 55.000 0.00 0.00 32.10 5.14
3311 4115 1.029681 ACAAAAGTCCGTTTGCTCCC 58.970 50.000 5.75 0.00 41.33 4.30
3312 4116 2.727777 GAACAAAAGTCCGTTTGCTCC 58.272 47.619 5.75 0.00 41.33 4.70
3313 4117 2.372350 CGAACAAAAGTCCGTTTGCTC 58.628 47.619 5.75 3.14 41.33 4.26
3314 4118 1.533129 GCGAACAAAAGTCCGTTTGCT 60.533 47.619 7.15 0.00 45.27 3.91
3315 4119 0.843872 GCGAACAAAAGTCCGTTTGC 59.156 50.000 5.75 0.00 43.30 3.68
3316 4120 2.468532 AGCGAACAAAAGTCCGTTTG 57.531 45.000 4.49 4.49 42.93 2.93
3317 4121 3.175929 CAAAGCGAACAAAAGTCCGTTT 58.824 40.909 0.00 0.00 0.00 3.60
3318 4122 2.162809 ACAAAGCGAACAAAAGTCCGTT 59.837 40.909 0.00 0.00 0.00 4.44
3319 4123 1.741145 ACAAAGCGAACAAAAGTCCGT 59.259 42.857 0.00 0.00 0.00 4.69
3320 4124 2.468532 ACAAAGCGAACAAAAGTCCG 57.531 45.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.