Multiple sequence alignment - TraesCS3A01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G114700 chr3A 100.000 3611 0 0 1 3611 82395496 82391886 0.000000e+00 6669.0
1 TraesCS3A01G114700 chr3A 95.833 240 10 0 3371 3610 108504553 108504314 4.370000e-104 388.0
2 TraesCS3A01G114700 chr3A 90.278 72 5 1 2708 2777 82392751 82392680 3.840000e-15 93.5
3 TraesCS3A01G114700 chr3A 90.278 72 5 1 2746 2817 82392789 82392720 3.840000e-15 93.5
4 TraesCS3A01G114700 chr3D 95.579 3167 84 14 1 3118 70715453 70712294 0.000000e+00 5022.0
5 TraesCS3A01G114700 chr3D 90.278 72 5 1 2746 2817 70712728 70712659 3.840000e-15 93.5
6 TraesCS3A01G114700 chr3B 91.593 3164 203 24 1 3118 116149945 116146799 0.000000e+00 4311.0
7 TraesCS3A01G114700 chr3B 82.850 414 26 10 3 398 116150536 116150150 2.690000e-86 329.0
8 TraesCS3A01G114700 chr3B 84.925 199 13 6 3114 3303 116146759 116146569 6.160000e-43 185.0
9 TraesCS3A01G114700 chr3B 100.000 72 0 0 2746 2817 116147235 116147164 2.260000e-27 134.0
10 TraesCS3A01G114700 chr3B 89.474 57 5 1 3114 3170 116136223 116136168 1.800000e-08 71.3
11 TraesCS3A01G114700 chr3B 100.000 32 0 0 2786 2817 116147235 116147204 3.890000e-05 60.2
12 TraesCS3A01G114700 chr2A 97.490 239 6 0 3373 3611 764920542 764920780 3.360000e-110 409.0
13 TraesCS3A01G114700 chr7D 96.250 240 9 0 3372 3611 491839009 491838770 9.400000e-106 394.0
14 TraesCS3A01G114700 chr7D 95.833 240 10 0 3372 3611 153006735 153006496 4.370000e-104 388.0
15 TraesCS3A01G114700 chr6D 96.250 240 9 0 3372 3611 386682959 386682720 9.400000e-106 394.0
16 TraesCS3A01G114700 chr5D 96.996 233 7 0 3373 3605 538257196 538257428 3.380000e-105 392.0
17 TraesCS3A01G114700 chr2B 95.833 240 10 0 3372 3611 666639607 666639368 4.370000e-104 388.0
18 TraesCS3A01G114700 chr7A 95.816 239 10 0 3373 3611 146900539 146900777 1.570000e-103 387.0
19 TraesCS3A01G114700 chr7B 95.041 242 12 0 3370 3611 635940478 635940237 7.320000e-102 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G114700 chr3A 82391886 82395496 3610 True 2285.333333 6669 93.518667 1 3611 3 chr3A.!!$R2 3610
1 TraesCS3A01G114700 chr3D 70712294 70715453 3159 True 2557.750000 5022 92.928500 1 3118 2 chr3D.!!$R1 3117
2 TraesCS3A01G114700 chr3B 116146569 116150536 3967 True 1003.840000 4311 91.873600 1 3303 5 chr3B.!!$R2 3302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 997 1.075659 GCTGGTTTCCCTCTTGCCT 59.924 57.895 0.00 0.0 0.0 4.75 F
1540 2174 0.178903 ACAGGTTGAGCTGGAGGGTA 60.179 55.000 14.01 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 2378 0.107703 TCGATCACCACCCTTGCATC 60.108 55.0 0.00 0.00 0.0 3.91 R
3345 4063 0.033894 TGCATGATGGCCTGTCACAT 60.034 50.0 12.66 4.63 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.998277 AGAGTAAGAGTGCTACCATCTAAATA 57.002 34.615 0.00 0.00 0.00 1.40
61 62 9.594936 AGAGTAAGAGTGCTACCATCTAAATAT 57.405 33.333 0.00 0.00 0.00 1.28
91 92 8.642020 CAAAATTAAGACTGCTGCTAAATTCAC 58.358 33.333 0.00 0.00 0.00 3.18
97 98 3.240069 CTGCTGCTAAATTCACACTTGC 58.760 45.455 0.00 0.00 0.00 4.01
185 192 4.636249 ACCTGCTAACAAGAGAAACTGAG 58.364 43.478 0.00 0.00 0.00 3.35
228 252 4.746535 TGGTCCGCAAGAGTTATGATTA 57.253 40.909 0.00 0.00 43.02 1.75
258 284 7.969536 ATATGTAGCGATTCAGCAGTTATTT 57.030 32.000 0.00 0.00 40.15 1.40
376 997 1.075659 GCTGGTTTCCCTCTTGCCT 59.924 57.895 0.00 0.00 0.00 4.75
399 1020 2.684881 GGGACATACTGGCATCACAAAG 59.315 50.000 0.00 0.00 0.00 2.77
455 1076 5.047731 TGTTTGCATGGGAAACGAATCAATA 60.048 36.000 8.46 0.00 36.30 1.90
540 1162 3.523972 AGTTGGGGGTCTAAAGAGGATTC 59.476 47.826 0.00 0.00 0.00 2.52
583 1205 8.635765 ACAAGATTAGAATTAGGAACTGCAAA 57.364 30.769 0.00 0.00 41.52 3.68
624 1246 6.370442 TGTGTCTAAGCGCATAAAGTTGTAAT 59.630 34.615 11.47 0.00 0.00 1.89
690 1312 6.741992 TCTAATAACAAGTCAACATGGCTG 57.258 37.500 0.00 0.00 29.54 4.85
700 1322 3.808726 GTCAACATGGCTGATCTGATCTC 59.191 47.826 17.82 9.84 0.00 2.75
1255 1889 2.087646 GGTTCCTCAACATGAGCTTCC 58.912 52.381 0.00 0.80 42.98 3.46
1382 2016 2.743928 CCTTGTGGCGGACTCTGC 60.744 66.667 0.64 0.64 0.00 4.26
1540 2174 0.178903 ACAGGTTGAGCTGGAGGGTA 60.179 55.000 14.01 0.00 0.00 3.69
1744 2378 1.142748 AGCGAGAAGAAGATGGCGG 59.857 57.895 0.00 0.00 0.00 6.13
1765 2399 1.003839 GCAAGGGTGGTGATCGACA 60.004 57.895 0.00 0.00 0.00 4.35
1785 2419 8.737168 TCGACAAATTCATCTATGAGGAAATT 57.263 30.769 0.00 0.00 36.00 1.82
1792 2426 5.674525 TCATCTATGAGGAAATTGCGAAGT 58.325 37.500 0.00 0.00 32.11 3.01
1808 2442 1.408702 GAAGTGGAAGGCACAAGCAAA 59.591 47.619 0.00 0.00 44.61 3.68
1813 2447 1.538849 GGAAGGCACAAGCAAACAAGG 60.539 52.381 0.00 0.00 44.61 3.61
1939 2573 0.401738 CTTTGCTGGGAAGGACCTCA 59.598 55.000 0.00 0.00 38.98 3.86
2073 2707 3.570125 TCTCTGTCTTCGAGTGTGACAAT 59.430 43.478 11.62 0.00 39.74 2.71
2087 2721 0.530870 GACAATCTCCGGCCTGCTAC 60.531 60.000 0.00 0.00 0.00 3.58
2125 2759 0.808125 CCTCGAGACACTCAGGTGAG 59.192 60.000 15.71 5.40 45.61 3.51
2645 3279 8.398665 GCTATCTGTTTTCTTACTTGGGTTATG 58.601 37.037 0.00 0.00 0.00 1.90
2650 3284 8.927675 TGTTTTCTTACTTGGGTTATGTATGT 57.072 30.769 0.00 0.00 0.00 2.29
2847 3483 7.441157 GGAACAGAATATTATGGTGATTCGTCA 59.559 37.037 14.27 0.00 35.23 4.35
2948 3608 2.229784 GCCCTCCTTGTGAAATTGAGTG 59.770 50.000 0.00 0.00 0.00 3.51
2955 3615 7.403312 TCCTTGTGAAATTGAGTGAGAAAAA 57.597 32.000 0.00 0.00 0.00 1.94
2981 3641 0.478072 TTGGACCTGCACCTGTTGAT 59.522 50.000 0.00 0.00 0.00 2.57
3045 3705 7.149569 TCATTTTGTTTCAGAGGCTATTCAG 57.850 36.000 0.00 0.00 0.00 3.02
3064 3724 5.684550 TCAGCAAATGATCATATGTGCTC 57.315 39.130 26.60 9.51 40.22 4.26
3118 3778 4.450976 GGCTCATGTTTTCCCAAAAGTTT 58.549 39.130 0.00 0.00 0.00 2.66
3119 3779 4.511454 GGCTCATGTTTTCCCAAAAGTTTC 59.489 41.667 0.00 0.00 0.00 2.78
3146 3850 1.905922 GAAAGTGACGCTCCTGCAGC 61.906 60.000 8.66 0.00 45.85 5.25
3217 3929 5.254339 GGAATGATCCATCCAAAGTTCAC 57.746 43.478 8.60 0.00 45.79 3.18
3219 3931 5.163581 GGAATGATCCATCCAAAGTTCACAG 60.164 44.000 8.60 0.00 45.79 3.66
3223 3935 4.286297 TCCATCCAAAGTTCACAGGTAG 57.714 45.455 0.00 0.00 0.00 3.18
3224 3936 3.650942 TCCATCCAAAGTTCACAGGTAGT 59.349 43.478 0.00 0.00 0.00 2.73
3225 3937 4.841813 TCCATCCAAAGTTCACAGGTAGTA 59.158 41.667 0.00 0.00 0.00 1.82
3283 4001 8.561738 TTGCTTAAGATTTCTAAGTTGGGTAG 57.438 34.615 6.67 0.00 0.00 3.18
3303 4021 3.099905 AGAGCTTGGTGATACTACAGCA 58.900 45.455 0.00 0.00 44.60 4.41
3304 4022 3.131933 AGAGCTTGGTGATACTACAGCAG 59.868 47.826 0.00 0.00 46.27 4.24
3305 4023 2.834549 AGCTTGGTGATACTACAGCAGT 59.165 45.455 0.00 0.00 46.27 4.40
3306 4024 4.023980 AGCTTGGTGATACTACAGCAGTA 58.976 43.478 0.00 0.00 46.27 2.74
3307 4025 4.113354 GCTTGGTGATACTACAGCAGTAC 58.887 47.826 0.00 0.00 46.27 2.73
3308 4026 4.381612 GCTTGGTGATACTACAGCAGTACA 60.382 45.833 0.00 0.00 46.27 2.90
3309 4027 4.983671 TGGTGATACTACAGCAGTACAG 57.016 45.455 0.00 0.00 42.56 2.74
3310 4028 3.130516 TGGTGATACTACAGCAGTACAGC 59.869 47.826 1.29 1.29 42.56 4.40
3311 4029 6.562349 TTGGTGATACTACAGCAGTACAGCT 61.562 44.000 6.99 6.99 46.27 4.24
3312 4030 4.579340 GGTGATACTACAGCAGTACAGCTA 59.421 45.833 12.89 0.00 44.54 3.32
3313 4031 5.241949 GGTGATACTACAGCAGTACAGCTAT 59.758 44.000 12.89 4.10 44.54 2.97
3314 4032 6.146216 GTGATACTACAGCAGTACAGCTATG 58.854 44.000 12.89 5.24 44.54 2.23
3315 4033 5.241728 TGATACTACAGCAGTACAGCTATGG 59.758 44.000 12.89 6.39 44.54 2.74
3316 4034 3.366396 ACTACAGCAGTACAGCTATGGT 58.634 45.455 12.89 7.11 44.54 3.55
3317 4035 4.533815 ACTACAGCAGTACAGCTATGGTA 58.466 43.478 12.89 10.03 44.54 3.25
3318 4036 4.954202 ACTACAGCAGTACAGCTATGGTAA 59.046 41.667 12.89 0.00 44.54 2.85
3319 4037 5.598830 ACTACAGCAGTACAGCTATGGTAAT 59.401 40.000 12.89 0.00 44.54 1.89
3320 4038 6.776116 ACTACAGCAGTACAGCTATGGTAATA 59.224 38.462 12.89 0.00 44.54 0.98
3321 4039 5.844004 ACAGCAGTACAGCTATGGTAATAC 58.156 41.667 12.89 0.00 44.54 1.89
3322 4040 5.598830 ACAGCAGTACAGCTATGGTAATACT 59.401 40.000 12.89 0.00 44.54 2.12
3323 4041 6.098409 ACAGCAGTACAGCTATGGTAATACTT 59.902 38.462 12.89 0.00 44.54 2.24
3324 4042 6.986817 CAGCAGTACAGCTATGGTAATACTTT 59.013 38.462 12.89 0.00 44.54 2.66
3325 4043 7.495934 CAGCAGTACAGCTATGGTAATACTTTT 59.504 37.037 12.89 0.00 44.54 2.27
3326 4044 8.047310 AGCAGTACAGCTATGGTAATACTTTTT 58.953 33.333 11.54 0.00 44.50 1.94
3344 4062 2.663826 TTTTTGTGCCGAAAACAGCT 57.336 40.000 0.00 0.00 0.00 4.24
3345 4063 3.784701 TTTTTGTGCCGAAAACAGCTA 57.215 38.095 0.00 0.00 0.00 3.32
3346 4064 4.314740 TTTTTGTGCCGAAAACAGCTAT 57.685 36.364 0.00 0.00 0.00 2.97
3347 4065 2.987413 TTGTGCCGAAAACAGCTATG 57.013 45.000 0.00 0.00 0.00 2.23
3348 4066 1.890876 TGTGCCGAAAACAGCTATGT 58.109 45.000 0.00 0.00 43.15 2.29
3349 4067 1.535028 TGTGCCGAAAACAGCTATGTG 59.465 47.619 0.00 0.00 40.39 3.21
3350 4068 1.804151 GTGCCGAAAACAGCTATGTGA 59.196 47.619 0.00 0.00 40.39 3.58
3351 4069 1.804151 TGCCGAAAACAGCTATGTGAC 59.196 47.619 0.00 0.00 40.39 3.67
3352 4070 1.804151 GCCGAAAACAGCTATGTGACA 59.196 47.619 0.00 0.00 40.39 3.58
3353 4071 2.159653 GCCGAAAACAGCTATGTGACAG 60.160 50.000 0.00 0.00 40.39 3.51
3354 4072 2.416547 CCGAAAACAGCTATGTGACAGG 59.583 50.000 0.00 0.00 40.39 4.00
3355 4073 2.159653 CGAAAACAGCTATGTGACAGGC 60.160 50.000 5.40 5.40 40.39 4.85
3356 4074 1.826385 AAACAGCTATGTGACAGGCC 58.174 50.000 0.00 0.00 40.39 5.19
3357 4075 0.692476 AACAGCTATGTGACAGGCCA 59.308 50.000 5.01 0.00 40.39 5.36
3358 4076 0.914644 ACAGCTATGTGACAGGCCAT 59.085 50.000 5.01 0.00 38.57 4.40
3359 4077 1.134280 ACAGCTATGTGACAGGCCATC 60.134 52.381 5.01 2.06 38.57 3.51
3360 4078 1.134310 CAGCTATGTGACAGGCCATCA 60.134 52.381 5.01 5.39 0.00 3.07
3361 4079 1.773052 AGCTATGTGACAGGCCATCAT 59.227 47.619 12.45 7.89 0.00 2.45
3362 4080 1.878088 GCTATGTGACAGGCCATCATG 59.122 52.381 12.45 0.37 0.00 3.07
3363 4081 1.878088 CTATGTGACAGGCCATCATGC 59.122 52.381 12.45 2.49 0.00 4.06
3364 4082 0.033894 ATGTGACAGGCCATCATGCA 60.034 50.000 12.45 7.68 0.00 3.96
3365 4083 0.251253 TGTGACAGGCCATCATGCAA 60.251 50.000 12.45 0.00 0.00 4.08
3366 4084 0.454600 GTGACAGGCCATCATGCAAG 59.545 55.000 12.45 0.00 0.00 4.01
3367 4085 1.317431 TGACAGGCCATCATGCAAGC 61.317 55.000 5.01 0.00 0.00 4.01
3368 4086 1.000019 ACAGGCCATCATGCAAGCT 60.000 52.632 5.01 0.00 0.00 3.74
3369 4087 0.613853 ACAGGCCATCATGCAAGCTT 60.614 50.000 5.01 0.00 0.00 3.74
3370 4088 0.535335 CAGGCCATCATGCAAGCTTT 59.465 50.000 5.01 0.00 0.00 3.51
3371 4089 0.822164 AGGCCATCATGCAAGCTTTC 59.178 50.000 5.01 0.00 0.00 2.62
3372 4090 0.822164 GGCCATCATGCAAGCTTTCT 59.178 50.000 0.00 0.00 0.00 2.52
3373 4091 1.470979 GGCCATCATGCAAGCTTTCTG 60.471 52.381 0.00 0.00 0.00 3.02
3374 4092 1.203994 GCCATCATGCAAGCTTTCTGT 59.796 47.619 0.00 0.00 0.00 3.41
3375 4093 2.353406 GCCATCATGCAAGCTTTCTGTT 60.353 45.455 0.00 0.00 0.00 3.16
3376 4094 3.250744 CCATCATGCAAGCTTTCTGTTG 58.749 45.455 0.00 0.40 0.00 3.33
3377 4095 3.057104 CCATCATGCAAGCTTTCTGTTGA 60.057 43.478 0.00 0.00 0.00 3.18
3378 4096 3.909776 TCATGCAAGCTTTCTGTTGAG 57.090 42.857 0.00 0.00 0.00 3.02
3379 4097 3.479489 TCATGCAAGCTTTCTGTTGAGA 58.521 40.909 0.00 0.00 0.00 3.27
3380 4098 4.077108 TCATGCAAGCTTTCTGTTGAGAT 58.923 39.130 0.00 0.00 0.00 2.75
3381 4099 5.247862 TCATGCAAGCTTTCTGTTGAGATA 58.752 37.500 0.00 0.00 0.00 1.98
3382 4100 5.884232 TCATGCAAGCTTTCTGTTGAGATAT 59.116 36.000 0.00 0.00 0.00 1.63
3383 4101 5.556355 TGCAAGCTTTCTGTTGAGATATG 57.444 39.130 0.00 0.00 0.00 1.78
3384 4102 5.005740 TGCAAGCTTTCTGTTGAGATATGT 58.994 37.500 0.00 0.00 0.00 2.29
3385 4103 6.172630 TGCAAGCTTTCTGTTGAGATATGTA 58.827 36.000 0.00 0.00 0.00 2.29
3386 4104 6.825213 TGCAAGCTTTCTGTTGAGATATGTAT 59.175 34.615 0.00 0.00 0.00 2.29
3387 4105 7.337689 TGCAAGCTTTCTGTTGAGATATGTATT 59.662 33.333 0.00 0.00 0.00 1.89
3388 4106 8.186821 GCAAGCTTTCTGTTGAGATATGTATTT 58.813 33.333 0.00 0.00 0.00 1.40
3391 4109 9.050601 AGCTTTCTGTTGAGATATGTATTTAGC 57.949 33.333 0.00 0.00 0.00 3.09
3392 4110 8.830580 GCTTTCTGTTGAGATATGTATTTAGCA 58.169 33.333 0.00 0.00 0.00 3.49
3394 4112 9.665719 TTTCTGTTGAGATATGTATTTAGCACA 57.334 29.630 0.00 0.00 0.00 4.57
3395 4113 9.836864 TTCTGTTGAGATATGTATTTAGCACAT 57.163 29.630 0.00 0.00 39.82 3.21
3396 4114 9.264719 TCTGTTGAGATATGTATTTAGCACATG 57.735 33.333 0.00 0.00 37.22 3.21
3397 4115 8.962884 TGTTGAGATATGTATTTAGCACATGT 57.037 30.769 0.00 0.00 37.22 3.21
3413 4131 9.764363 TTAGCACATGTATTCTTATACTCCAAG 57.236 33.333 0.00 0.00 37.97 3.61
3414 4132 7.796054 AGCACATGTATTCTTATACTCCAAGT 58.204 34.615 0.00 0.00 37.97 3.16
3415 4133 7.928706 AGCACATGTATTCTTATACTCCAAGTC 59.071 37.037 0.00 0.00 37.97 3.01
3416 4134 7.928706 GCACATGTATTCTTATACTCCAAGTCT 59.071 37.037 0.00 0.00 37.97 3.24
3417 4135 9.469807 CACATGTATTCTTATACTCCAAGTCTC 57.530 37.037 0.00 0.00 37.97 3.36
3418 4136 8.643324 ACATGTATTCTTATACTCCAAGTCTCC 58.357 37.037 0.00 0.00 37.97 3.71
3419 4137 8.865090 CATGTATTCTTATACTCCAAGTCTCCT 58.135 37.037 0.00 0.00 37.97 3.69
3420 4138 8.466617 TGTATTCTTATACTCCAAGTCTCCTC 57.533 38.462 0.00 0.00 37.97 3.71
3421 4139 6.987403 ATTCTTATACTCCAAGTCTCCTCC 57.013 41.667 0.00 0.00 0.00 4.30
3422 4140 5.735733 TCTTATACTCCAAGTCTCCTCCT 57.264 43.478 0.00 0.00 0.00 3.69
3423 4141 6.093617 TCTTATACTCCAAGTCTCCTCCTT 57.906 41.667 0.00 0.00 0.00 3.36
3424 4142 5.894393 TCTTATACTCCAAGTCTCCTCCTTG 59.106 44.000 0.00 0.00 39.19 3.61
3425 4143 2.407340 ACTCCAAGTCTCCTCCTTGT 57.593 50.000 0.00 0.00 38.07 3.16
3426 4144 1.974236 ACTCCAAGTCTCCTCCTTGTG 59.026 52.381 0.00 0.00 38.07 3.33
3427 4145 1.974236 CTCCAAGTCTCCTCCTTGTGT 59.026 52.381 0.00 0.00 38.07 3.72
3428 4146 3.165875 CTCCAAGTCTCCTCCTTGTGTA 58.834 50.000 0.00 0.00 38.07 2.90
3429 4147 3.772025 CTCCAAGTCTCCTCCTTGTGTAT 59.228 47.826 0.00 0.00 38.07 2.29
3430 4148 4.942944 TCCAAGTCTCCTCCTTGTGTATA 58.057 43.478 0.00 0.00 38.07 1.47
3431 4149 4.956700 TCCAAGTCTCCTCCTTGTGTATAG 59.043 45.833 0.00 0.00 38.07 1.31
3432 4150 4.712337 CCAAGTCTCCTCCTTGTGTATAGT 59.288 45.833 0.00 0.00 38.07 2.12
3433 4151 5.187967 CCAAGTCTCCTCCTTGTGTATAGTT 59.812 44.000 0.00 0.00 38.07 2.24
3434 4152 5.923733 AGTCTCCTCCTTGTGTATAGTTG 57.076 43.478 0.00 0.00 0.00 3.16
3435 4153 5.580998 AGTCTCCTCCTTGTGTATAGTTGA 58.419 41.667 0.00 0.00 0.00 3.18
3436 4154 5.654650 AGTCTCCTCCTTGTGTATAGTTGAG 59.345 44.000 0.00 0.00 0.00 3.02
3437 4155 4.956700 TCTCCTCCTTGTGTATAGTTGAGG 59.043 45.833 0.00 0.00 39.38 3.86
3438 4156 4.942944 TCCTCCTTGTGTATAGTTGAGGA 58.057 43.478 0.00 0.00 43.35 3.71
3439 4157 5.529289 TCCTCCTTGTGTATAGTTGAGGAT 58.471 41.667 0.00 0.00 41.36 3.24
3440 4158 6.679542 TCCTCCTTGTGTATAGTTGAGGATA 58.320 40.000 0.00 0.00 41.36 2.59
3441 4159 6.550108 TCCTCCTTGTGTATAGTTGAGGATAC 59.450 42.308 0.00 0.00 41.36 2.24
3442 4160 6.387041 TCCTTGTGTATAGTTGAGGATACG 57.613 41.667 0.00 0.00 46.39 3.06
3443 4161 6.124340 TCCTTGTGTATAGTTGAGGATACGA 58.876 40.000 0.00 0.00 46.39 3.43
3444 4162 6.039047 TCCTTGTGTATAGTTGAGGATACGAC 59.961 42.308 0.00 0.00 46.39 4.34
3445 4163 6.039493 CCTTGTGTATAGTTGAGGATACGACT 59.961 42.308 0.00 0.00 46.39 4.18
3446 4164 7.400599 TTGTGTATAGTTGAGGATACGACTT 57.599 36.000 0.00 0.00 46.39 3.01
3447 4165 6.792326 TGTGTATAGTTGAGGATACGACTTG 58.208 40.000 0.00 0.00 46.39 3.16
3448 4166 5.686397 GTGTATAGTTGAGGATACGACTTGC 59.314 44.000 0.00 0.00 46.39 4.01
3449 4167 2.674796 AGTTGAGGATACGACTTGCC 57.325 50.000 0.00 0.00 46.39 4.52
3450 4168 1.207329 AGTTGAGGATACGACTTGCCC 59.793 52.381 0.00 0.00 46.39 5.36
3451 4169 1.207329 GTTGAGGATACGACTTGCCCT 59.793 52.381 0.00 0.00 46.39 5.19
3452 4170 2.429610 GTTGAGGATACGACTTGCCCTA 59.570 50.000 0.00 0.00 46.39 3.53
3453 4171 2.958818 TGAGGATACGACTTGCCCTAT 58.041 47.619 0.00 0.00 46.39 2.57
3454 4172 2.628178 TGAGGATACGACTTGCCCTATG 59.372 50.000 0.00 0.00 46.39 2.23
3455 4173 2.628657 GAGGATACGACTTGCCCTATGT 59.371 50.000 0.00 0.00 46.39 2.29
3456 4174 3.825014 GAGGATACGACTTGCCCTATGTA 59.175 47.826 0.00 0.00 46.39 2.29
3457 4175 3.573110 AGGATACGACTTGCCCTATGTAC 59.427 47.826 0.00 0.00 46.39 2.90
3458 4176 3.573110 GGATACGACTTGCCCTATGTACT 59.427 47.826 0.00 0.00 0.00 2.73
3459 4177 4.763793 GGATACGACTTGCCCTATGTACTA 59.236 45.833 0.00 0.00 0.00 1.82
3460 4178 5.418209 GGATACGACTTGCCCTATGTACTAT 59.582 44.000 0.00 0.00 0.00 2.12
3461 4179 6.600822 GGATACGACTTGCCCTATGTACTATA 59.399 42.308 0.00 0.00 0.00 1.31
3462 4180 7.284944 GGATACGACTTGCCCTATGTACTATAT 59.715 40.741 0.00 0.00 0.00 0.86
3463 4181 9.334947 GATACGACTTGCCCTATGTACTATATA 57.665 37.037 0.00 0.00 0.00 0.86
3464 4182 9.863650 ATACGACTTGCCCTATGTACTATATAT 57.136 33.333 0.00 0.00 0.00 0.86
3466 4184 9.118300 ACGACTTGCCCTATGTACTATATATAC 57.882 37.037 0.00 0.00 0.00 1.47
3467 4185 9.339850 CGACTTGCCCTATGTACTATATATACT 57.660 37.037 0.00 0.00 0.00 2.12
3472 4190 8.692710 TGCCCTATGTACTATATATACTTGTGC 58.307 37.037 0.00 0.00 0.00 4.57
3473 4191 8.692710 GCCCTATGTACTATATATACTTGTGCA 58.307 37.037 0.00 4.60 0.00 4.57
3495 4213 7.381766 GCATATGCACCTATCAATACATTGA 57.618 36.000 22.84 7.08 44.65 2.57
3496 4214 7.120138 TGCATATGCACCTATCAATACATTGAG 59.880 37.037 26.32 0.60 46.74 3.02
3497 4215 7.335171 GCATATGCACCTATCAATACATTGAGA 59.665 37.037 22.84 5.15 44.22 3.27
3509 4227 8.913487 TCAATACATTGAGAGTTGCATCATAT 57.087 30.769 0.45 0.00 41.51 1.78
3510 4228 9.346005 TCAATACATTGAGAGTTGCATCATATT 57.654 29.630 0.45 0.00 41.51 1.28
3511 4229 9.608617 CAATACATTGAGAGTTGCATCATATTC 57.391 33.333 0.00 0.00 40.14 1.75
3512 4230 6.630444 ACATTGAGAGTTGCATCATATTCC 57.370 37.500 0.00 0.00 0.00 3.01
3513 4231 6.363065 ACATTGAGAGTTGCATCATATTCCT 58.637 36.000 0.00 0.00 0.00 3.36
3514 4232 6.485984 ACATTGAGAGTTGCATCATATTCCTC 59.514 38.462 0.00 0.00 0.00 3.71
3515 4233 5.883685 TGAGAGTTGCATCATATTCCTCT 57.116 39.130 0.00 0.00 0.00 3.69
3516 4234 6.983906 TGAGAGTTGCATCATATTCCTCTA 57.016 37.500 0.00 0.00 0.00 2.43
3517 4235 6.753180 TGAGAGTTGCATCATATTCCTCTAC 58.247 40.000 0.00 0.00 0.00 2.59
3518 4236 6.324770 TGAGAGTTGCATCATATTCCTCTACA 59.675 38.462 0.00 0.00 0.00 2.74
3519 4237 7.015974 TGAGAGTTGCATCATATTCCTCTACAT 59.984 37.037 0.00 0.00 0.00 2.29
3520 4238 7.160049 AGAGTTGCATCATATTCCTCTACATG 58.840 38.462 0.00 0.00 0.00 3.21
3521 4239 6.236409 AGTTGCATCATATTCCTCTACATGG 58.764 40.000 0.00 0.00 0.00 3.66
3522 4240 5.830799 TGCATCATATTCCTCTACATGGT 57.169 39.130 0.00 0.00 0.00 3.55
3523 4241 6.933514 TGCATCATATTCCTCTACATGGTA 57.066 37.500 0.00 0.00 0.00 3.25
3524 4242 7.500629 TGCATCATATTCCTCTACATGGTAT 57.499 36.000 0.00 0.00 0.00 2.73
3525 4243 7.559486 TGCATCATATTCCTCTACATGGTATC 58.441 38.462 0.00 0.00 0.00 2.24
3526 4244 7.180766 TGCATCATATTCCTCTACATGGTATCA 59.819 37.037 0.00 0.00 0.00 2.15
3527 4245 7.710044 GCATCATATTCCTCTACATGGTATCAG 59.290 40.741 0.00 0.00 0.00 2.90
3528 4246 7.175347 TCATATTCCTCTACATGGTATCAGC 57.825 40.000 0.00 0.00 0.00 4.26
3529 4247 4.899352 ATTCCTCTACATGGTATCAGCC 57.101 45.455 0.00 0.00 0.00 4.85
3530 4248 3.619900 TCCTCTACATGGTATCAGCCT 57.380 47.619 0.00 0.00 0.00 4.58
3531 4249 4.741928 TCCTCTACATGGTATCAGCCTA 57.258 45.455 0.00 0.00 0.00 3.93
3532 4250 5.074746 TCCTCTACATGGTATCAGCCTAA 57.925 43.478 0.00 0.00 0.00 2.69
3533 4251 4.833380 TCCTCTACATGGTATCAGCCTAAC 59.167 45.833 0.00 0.00 0.00 2.34
3534 4252 4.021016 CCTCTACATGGTATCAGCCTAACC 60.021 50.000 0.00 0.00 0.00 2.85
3535 4253 3.901844 TCTACATGGTATCAGCCTAACCC 59.098 47.826 0.00 0.00 31.97 4.11
3536 4254 2.776665 ACATGGTATCAGCCTAACCCT 58.223 47.619 0.00 0.00 31.97 4.34
3537 4255 2.706190 ACATGGTATCAGCCTAACCCTC 59.294 50.000 0.00 0.00 31.97 4.30
3538 4256 1.410004 TGGTATCAGCCTAACCCTCG 58.590 55.000 0.00 0.00 31.97 4.63
3539 4257 0.680061 GGTATCAGCCTAACCCTCGG 59.320 60.000 0.00 0.00 0.00 4.63
3540 4258 1.411041 GTATCAGCCTAACCCTCGGT 58.589 55.000 0.00 0.00 37.65 4.69
3541 4259 1.340568 GTATCAGCCTAACCCTCGGTC 59.659 57.143 0.00 0.00 33.12 4.79
3542 4260 1.049289 ATCAGCCTAACCCTCGGTCC 61.049 60.000 0.00 0.00 33.12 4.46
3543 4261 2.365237 AGCCTAACCCTCGGTCCC 60.365 66.667 0.00 0.00 33.12 4.46
3544 4262 3.477346 GCCTAACCCTCGGTCCCC 61.477 72.222 0.00 0.00 33.12 4.81
3545 4263 2.039951 CCTAACCCTCGGTCCCCA 59.960 66.667 0.00 0.00 33.12 4.96
3546 4264 2.064581 CCTAACCCTCGGTCCCCAG 61.065 68.421 0.00 0.00 33.12 4.45
3547 4265 2.686106 TAACCCTCGGTCCCCAGC 60.686 66.667 0.00 0.00 33.12 4.85
3551 4269 4.475444 CCTCGGTCCCCAGCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
3552 4270 2.840102 CTCGGTCCCCAGCCCTAG 60.840 72.222 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.558359 ACCCAGCAAGTGTGAATTTAGC 59.442 45.455 0.00 0.00 0.00 3.09
91 92 4.207891 ACTCTGTAATACCCAGCAAGTG 57.792 45.455 0.00 0.00 0.00 3.16
97 98 4.464951 TGGTGTGTACTCTGTAATACCCAG 59.535 45.833 0.00 0.00 0.00 4.45
228 252 5.853936 TGCTGAATCGCTACATATAAACCT 58.146 37.500 0.00 0.00 0.00 3.50
258 284 2.865119 ATGACAGTGTTCATCAGCCA 57.135 45.000 0.00 0.00 29.74 4.75
311 932 4.201970 CGTCTTAGCTTCCTAACCAGAGAG 60.202 50.000 0.00 0.00 30.63 3.20
376 997 0.464036 GTGATGCCAGTATGTCCCGA 59.536 55.000 0.00 0.00 0.00 5.14
465 1086 4.934797 TCCTTGAAACTGATCCCAATCT 57.065 40.909 0.00 0.00 32.75 2.40
604 1226 5.065988 ACCCATTACAACTTTATGCGCTTAG 59.934 40.000 9.73 0.00 0.00 2.18
624 1246 1.746220 CAACTTTGACGGTTTGACCCA 59.254 47.619 0.00 0.00 33.75 4.51
669 1291 7.066163 CAGATCAGCCATGTTGACTTGTTATTA 59.934 37.037 0.00 0.00 0.00 0.98
670 1292 5.948162 AGATCAGCCATGTTGACTTGTTATT 59.052 36.000 0.00 0.00 0.00 1.40
671 1293 5.356190 CAGATCAGCCATGTTGACTTGTTAT 59.644 40.000 0.00 0.00 0.00 1.89
677 1299 3.455177 AGATCAGATCAGCCATGTTGACT 59.545 43.478 13.14 0.00 0.00 3.41
690 1312 9.699703 GTACCCACTTAATTAAGAGATCAGATC 57.300 37.037 27.92 1.64 37.08 2.75
700 1322 6.708285 ACCTGTCAGTACCCACTTAATTAAG 58.292 40.000 21.21 21.21 39.18 1.85
1152 1786 7.665145 TCATGAATTTGGTACAGATTTCTCACA 59.335 33.333 0.00 0.00 43.41 3.58
1540 2174 5.752036 TCAAGTGAGAACCTCATGAAGAT 57.248 39.130 0.00 0.00 42.73 2.40
1744 2378 0.107703 TCGATCACCACCCTTGCATC 60.108 55.000 0.00 0.00 0.00 3.91
1765 2399 7.572523 TCGCAATTTCCTCATAGATGAATTT 57.427 32.000 0.00 0.00 36.18 1.82
1785 2419 1.153066 TTGTGCCTTCCACTTCGCA 60.153 52.632 0.00 0.00 44.92 5.10
1792 2426 1.136695 CTTGTTTGCTTGTGCCTTCCA 59.863 47.619 0.00 0.00 38.71 3.53
1808 2442 0.329596 GTCTCCCTGGCATTCCTTGT 59.670 55.000 0.00 0.00 0.00 3.16
1813 2447 2.109126 GCACGTCTCCCTGGCATTC 61.109 63.158 0.00 0.00 0.00 2.67
1939 2573 3.599412 ACGTGAGTGTAACGGCAAT 57.401 47.368 0.00 0.00 46.97 3.56
2073 2707 1.041447 GGTAAGTAGCAGGCCGGAGA 61.041 60.000 5.05 0.00 0.00 3.71
2125 2759 4.683671 GCTAGACAAGGTGAAAGGGGTATC 60.684 50.000 0.00 0.00 0.00 2.24
2385 3019 0.393077 ACTTGTAGCTTGGCTCGTGT 59.607 50.000 0.00 0.00 40.44 4.49
2578 3212 2.295904 GCTCCCTTCTCTTGAGCCT 58.704 57.895 0.00 0.00 44.45 4.58
2599 3233 2.746362 GCAGTAAAGATCAAGCAGCTGT 59.254 45.455 16.64 0.00 0.00 4.40
2645 3279 8.056571 GCATTTAGTTCTGTTCGATACACATAC 58.943 37.037 0.00 0.00 32.10 2.39
2650 3284 6.394809 TCTGCATTTAGTTCTGTTCGATACA 58.605 36.000 0.00 0.00 34.95 2.29
2741 3377 3.119245 TCCAACACTACGAACAGATAGCC 60.119 47.826 0.00 0.00 0.00 3.93
2836 3472 6.422776 AAATAACTCACATGACGAATCACC 57.577 37.500 0.00 0.00 37.79 4.02
2843 3479 9.605955 TTTTACATGAAAATAACTCACATGACG 57.394 29.630 0.00 0.00 40.13 4.35
2955 3615 1.145738 AGGTGCAGGTCCAAGAAATGT 59.854 47.619 0.00 0.00 0.00 2.71
3045 3705 5.145059 CGAAGAGCACATATGATCATTTGC 58.855 41.667 21.68 21.21 44.05 3.68
3062 3722 6.524586 CCAATGCTACTTTTAAAAGCGAAGAG 59.475 38.462 24.60 15.50 39.63 2.85
3064 3724 5.060940 GCCAATGCTACTTTTAAAAGCGAAG 59.939 40.000 24.60 19.63 39.14 3.79
3096 3756 3.751479 ACTTTTGGGAAAACATGAGCC 57.249 42.857 0.00 0.00 0.00 4.70
3118 3778 4.705507 AGGAGCGTCACTTTCACTATAAGA 59.294 41.667 0.00 0.00 0.00 2.10
3119 3779 4.800993 CAGGAGCGTCACTTTCACTATAAG 59.199 45.833 0.00 0.00 0.00 1.73
3146 3850 5.578727 CAGAGACGAAATTAAACTCCTCAGG 59.421 44.000 0.00 0.00 0.00 3.86
3241 3959 9.257651 TCTTAAGCAAAGAGAGTTGTTAACTAC 57.742 33.333 11.62 11.62 39.54 2.73
3283 4001 3.118956 ACTGCTGTAGTATCACCAAGCTC 60.119 47.826 0.00 0.00 38.04 4.09
3333 4051 2.416547 CCTGTCACATAGCTGTTTTCGG 59.583 50.000 0.00 0.00 31.62 4.30
3334 4052 2.159653 GCCTGTCACATAGCTGTTTTCG 60.160 50.000 0.00 0.00 31.62 3.46
3335 4053 2.162408 GGCCTGTCACATAGCTGTTTTC 59.838 50.000 0.00 0.00 31.62 2.29
3336 4054 2.162681 GGCCTGTCACATAGCTGTTTT 58.837 47.619 0.00 0.00 31.62 2.43
3337 4055 1.073763 TGGCCTGTCACATAGCTGTTT 59.926 47.619 3.32 0.00 31.62 2.83
3338 4056 0.692476 TGGCCTGTCACATAGCTGTT 59.308 50.000 3.32 0.00 31.62 3.16
3339 4057 0.914644 ATGGCCTGTCACATAGCTGT 59.085 50.000 3.32 0.00 35.44 4.40
3340 4058 1.134310 TGATGGCCTGTCACATAGCTG 60.134 52.381 3.32 0.00 0.00 4.24
3341 4059 1.206878 TGATGGCCTGTCACATAGCT 58.793 50.000 3.32 0.00 0.00 3.32
3342 4060 1.878088 CATGATGGCCTGTCACATAGC 59.122 52.381 12.66 0.00 0.00 2.97
3343 4061 1.878088 GCATGATGGCCTGTCACATAG 59.122 52.381 12.66 5.96 0.00 2.23
3344 4062 1.212441 TGCATGATGGCCTGTCACATA 59.788 47.619 12.66 1.37 0.00 2.29
3345 4063 0.033894 TGCATGATGGCCTGTCACAT 60.034 50.000 12.66 4.63 0.00 3.21
3346 4064 0.251253 TTGCATGATGGCCTGTCACA 60.251 50.000 12.66 5.91 0.00 3.58
3347 4065 0.454600 CTTGCATGATGGCCTGTCAC 59.545 55.000 12.66 3.65 0.00 3.67
3348 4066 1.317431 GCTTGCATGATGGCCTGTCA 61.317 55.000 12.76 12.76 0.00 3.58
3349 4067 1.035932 AGCTTGCATGATGGCCTGTC 61.036 55.000 3.32 2.62 0.00 3.51
3350 4068 0.613853 AAGCTTGCATGATGGCCTGT 60.614 50.000 3.32 0.00 0.00 4.00
3351 4069 0.535335 AAAGCTTGCATGATGGCCTG 59.465 50.000 3.32 0.00 0.00 4.85
3352 4070 0.822164 GAAAGCTTGCATGATGGCCT 59.178 50.000 3.32 0.00 0.00 5.19
3353 4071 0.822164 AGAAAGCTTGCATGATGGCC 59.178 50.000 7.33 0.00 0.00 5.36
3354 4072 1.203994 ACAGAAAGCTTGCATGATGGC 59.796 47.619 7.33 0.00 0.00 4.40
3355 4073 3.057104 TCAACAGAAAGCTTGCATGATGG 60.057 43.478 7.33 0.00 0.00 3.51
3356 4074 4.082949 TCTCAACAGAAAGCTTGCATGATG 60.083 41.667 7.33 8.24 0.00 3.07
3357 4075 4.077108 TCTCAACAGAAAGCTTGCATGAT 58.923 39.130 7.33 0.00 0.00 2.45
3358 4076 3.479489 TCTCAACAGAAAGCTTGCATGA 58.521 40.909 7.33 7.26 0.00 3.07
3359 4077 3.909776 TCTCAACAGAAAGCTTGCATG 57.090 42.857 7.33 5.76 0.00 4.06
3360 4078 5.651139 ACATATCTCAACAGAAAGCTTGCAT 59.349 36.000 7.33 0.00 30.24 3.96
3361 4079 5.005740 ACATATCTCAACAGAAAGCTTGCA 58.994 37.500 7.33 0.00 30.24 4.08
3362 4080 5.557891 ACATATCTCAACAGAAAGCTTGC 57.442 39.130 0.00 0.00 30.24 4.01
3365 4083 9.050601 GCTAAATACATATCTCAACAGAAAGCT 57.949 33.333 0.00 0.00 30.24 3.74
3366 4084 8.830580 TGCTAAATACATATCTCAACAGAAAGC 58.169 33.333 0.00 0.00 30.24 3.51
3368 4086 9.665719 TGTGCTAAATACATATCTCAACAGAAA 57.334 29.630 0.00 0.00 30.24 2.52
3369 4087 9.836864 ATGTGCTAAATACATATCTCAACAGAA 57.163 29.630 0.00 0.00 37.02 3.02
3370 4088 9.264719 CATGTGCTAAATACATATCTCAACAGA 57.735 33.333 0.00 0.00 36.67 3.41
3371 4089 9.049523 ACATGTGCTAAATACATATCTCAACAG 57.950 33.333 0.00 0.00 36.67 3.16
3372 4090 8.962884 ACATGTGCTAAATACATATCTCAACA 57.037 30.769 0.00 0.00 36.67 3.33
3387 4105 9.764363 CTTGGAGTATAAGAATACATGTGCTAA 57.236 33.333 9.11 0.00 40.49 3.09
3388 4106 8.924303 ACTTGGAGTATAAGAATACATGTGCTA 58.076 33.333 9.11 0.00 40.49 3.49
3389 4107 7.796054 ACTTGGAGTATAAGAATACATGTGCT 58.204 34.615 9.11 0.00 40.49 4.40
3390 4108 7.928706 AGACTTGGAGTATAAGAATACATGTGC 59.071 37.037 9.11 0.00 40.49 4.57
3391 4109 9.469807 GAGACTTGGAGTATAAGAATACATGTG 57.530 37.037 9.11 0.00 40.49 3.21
3392 4110 8.643324 GGAGACTTGGAGTATAAGAATACATGT 58.357 37.037 2.69 2.69 40.49 3.21
3393 4111 8.865090 AGGAGACTTGGAGTATAAGAATACATG 58.135 37.037 0.00 0.00 38.10 3.21
3394 4112 9.084533 GAGGAGACTTGGAGTATAAGAATACAT 57.915 37.037 0.00 0.00 44.43 2.29
3395 4113 7.506261 GGAGGAGACTTGGAGTATAAGAATACA 59.494 40.741 0.00 0.00 44.43 2.29
3396 4114 7.726738 AGGAGGAGACTTGGAGTATAAGAATAC 59.273 40.741 0.00 0.00 44.43 1.89
3397 4115 7.827787 AGGAGGAGACTTGGAGTATAAGAATA 58.172 38.462 0.00 0.00 44.43 1.75
3398 4116 6.688554 AGGAGGAGACTTGGAGTATAAGAAT 58.311 40.000 0.00 0.00 44.43 2.40
3399 4117 6.093617 AGGAGGAGACTTGGAGTATAAGAA 57.906 41.667 0.00 0.00 44.43 2.52
3400 4118 5.735733 AGGAGGAGACTTGGAGTATAAGA 57.264 43.478 0.00 0.00 44.43 2.10
3401 4119 6.155475 CAAGGAGGAGACTTGGAGTATAAG 57.845 45.833 0.00 0.00 44.43 1.73
3411 4129 6.017192 TCAACTATACACAAGGAGGAGACTT 58.983 40.000 0.00 0.00 44.43 3.01
3412 4130 9.398575 TCCTCAACTATACACAAGGAGGAGACT 62.399 44.444 0.00 0.00 43.19 3.24
3413 4131 5.163499 CCTCAACTATACACAAGGAGGAGAC 60.163 48.000 0.00 0.00 42.32 3.36
3414 4132 4.956700 CCTCAACTATACACAAGGAGGAGA 59.043 45.833 0.00 0.00 42.32 3.71
3415 4133 4.956700 TCCTCAACTATACACAAGGAGGAG 59.043 45.833 0.00 0.00 43.19 3.69
3416 4134 4.942944 TCCTCAACTATACACAAGGAGGA 58.057 43.478 0.00 0.00 45.17 3.71
3417 4135 5.878406 ATCCTCAACTATACACAAGGAGG 57.122 43.478 0.00 0.00 41.35 4.30
3418 4136 6.262496 TCGTATCCTCAACTATACACAAGGAG 59.738 42.308 0.00 0.00 36.42 3.69
3419 4137 6.039047 GTCGTATCCTCAACTATACACAAGGA 59.961 42.308 0.00 0.00 37.33 3.36
3420 4138 6.039493 AGTCGTATCCTCAACTATACACAAGG 59.961 42.308 0.00 0.00 0.00 3.61
3421 4139 7.028926 AGTCGTATCCTCAACTATACACAAG 57.971 40.000 0.00 0.00 0.00 3.16
3422 4140 7.255569 CAAGTCGTATCCTCAACTATACACAA 58.744 38.462 0.00 0.00 0.00 3.33
3423 4141 6.679638 GCAAGTCGTATCCTCAACTATACACA 60.680 42.308 0.00 0.00 0.00 3.72
3424 4142 5.686397 GCAAGTCGTATCCTCAACTATACAC 59.314 44.000 0.00 0.00 0.00 2.90
3425 4143 5.221185 GGCAAGTCGTATCCTCAACTATACA 60.221 44.000 0.00 0.00 0.00 2.29
3426 4144 5.221130 GGCAAGTCGTATCCTCAACTATAC 58.779 45.833 0.00 0.00 0.00 1.47
3427 4145 4.280174 GGGCAAGTCGTATCCTCAACTATA 59.720 45.833 0.00 0.00 0.00 1.31
3428 4146 3.069729 GGGCAAGTCGTATCCTCAACTAT 59.930 47.826 0.00 0.00 0.00 2.12
3429 4147 2.429610 GGGCAAGTCGTATCCTCAACTA 59.570 50.000 0.00 0.00 0.00 2.24
3430 4148 1.207329 GGGCAAGTCGTATCCTCAACT 59.793 52.381 0.00 0.00 0.00 3.16
3431 4149 1.207329 AGGGCAAGTCGTATCCTCAAC 59.793 52.381 0.00 0.00 0.00 3.18
3432 4150 1.568504 AGGGCAAGTCGTATCCTCAA 58.431 50.000 0.00 0.00 0.00 3.02
3433 4151 2.447408 TAGGGCAAGTCGTATCCTCA 57.553 50.000 0.00 0.00 0.00 3.86
3434 4152 2.628657 ACATAGGGCAAGTCGTATCCTC 59.371 50.000 0.00 0.00 0.00 3.71
3435 4153 2.679082 ACATAGGGCAAGTCGTATCCT 58.321 47.619 0.00 0.00 0.00 3.24
3436 4154 3.573110 AGTACATAGGGCAAGTCGTATCC 59.427 47.826 0.00 0.00 0.00 2.59
3437 4155 4.850347 AGTACATAGGGCAAGTCGTATC 57.150 45.455 0.00 0.00 0.00 2.24
3438 4156 9.863650 ATATATAGTACATAGGGCAAGTCGTAT 57.136 33.333 0.00 0.00 0.00 3.06
3440 4158 9.118300 GTATATATAGTACATAGGGCAAGTCGT 57.882 37.037 0.00 0.00 0.00 4.34
3441 4159 9.339850 AGTATATATAGTACATAGGGCAAGTCG 57.660 37.037 0.00 0.00 0.00 4.18
3446 4164 8.692710 GCACAAGTATATATAGTACATAGGGCA 58.307 37.037 0.38 0.00 0.00 5.36
3447 4165 8.692710 TGCACAAGTATATATAGTACATAGGGC 58.307 37.037 0.38 3.32 0.00 5.19
3470 4188 6.941436 TCAATGTATTGATAGGTGCATATGCA 59.059 34.615 26.32 26.32 44.18 3.96
3471 4189 7.335171 TCTCAATGTATTGATAGGTGCATATGC 59.665 37.037 21.09 21.09 44.92 3.14
3472 4190 8.782339 TCTCAATGTATTGATAGGTGCATATG 57.218 34.615 7.67 0.00 44.92 1.78
3473 4191 8.600668 ACTCTCAATGTATTGATAGGTGCATAT 58.399 33.333 18.38 0.00 44.92 1.78
3474 4192 7.966812 ACTCTCAATGTATTGATAGGTGCATA 58.033 34.615 18.38 0.00 44.92 3.14
3475 4193 6.835174 ACTCTCAATGTATTGATAGGTGCAT 58.165 36.000 18.38 1.69 44.92 3.96
3476 4194 6.239217 ACTCTCAATGTATTGATAGGTGCA 57.761 37.500 18.38 0.00 44.92 4.57
3477 4195 6.952743 CAACTCTCAATGTATTGATAGGTGC 58.047 40.000 18.81 0.00 45.38 5.01
3479 4197 6.653020 TGCAACTCTCAATGTATTGATAGGT 58.347 36.000 18.38 12.45 44.92 3.08
3480 4198 7.443272 TGATGCAACTCTCAATGTATTGATAGG 59.557 37.037 18.38 10.39 44.92 2.57
3481 4199 8.374327 TGATGCAACTCTCAATGTATTGATAG 57.626 34.615 14.70 14.70 44.92 2.08
3482 4200 8.913487 ATGATGCAACTCTCAATGTATTGATA 57.087 30.769 7.67 0.89 44.92 2.15
3483 4201 7.818997 ATGATGCAACTCTCAATGTATTGAT 57.181 32.000 7.67 0.00 44.92 2.57
3484 4202 8.913487 ATATGATGCAACTCTCAATGTATTGA 57.087 30.769 7.06 7.06 43.94 2.57
3485 4203 9.608617 GAATATGATGCAACTCTCAATGTATTG 57.391 33.333 0.00 0.00 39.10 1.90
3486 4204 8.790718 GGAATATGATGCAACTCTCAATGTATT 58.209 33.333 0.00 0.00 0.00 1.89
3487 4205 8.162085 AGGAATATGATGCAACTCTCAATGTAT 58.838 33.333 0.00 0.00 0.00 2.29
3488 4206 7.512130 AGGAATATGATGCAACTCTCAATGTA 58.488 34.615 0.00 0.00 0.00 2.29
3489 4207 6.363065 AGGAATATGATGCAACTCTCAATGT 58.637 36.000 0.00 0.00 0.00 2.71
3490 4208 6.711194 AGAGGAATATGATGCAACTCTCAATG 59.289 38.462 0.00 0.00 0.00 2.82
3491 4209 6.839454 AGAGGAATATGATGCAACTCTCAAT 58.161 36.000 0.00 0.00 0.00 2.57
3492 4210 6.244552 AGAGGAATATGATGCAACTCTCAA 57.755 37.500 0.00 0.00 0.00 3.02
3493 4211 5.883685 AGAGGAATATGATGCAACTCTCA 57.116 39.130 0.00 0.00 0.00 3.27
3494 4212 6.753180 TGTAGAGGAATATGATGCAACTCTC 58.247 40.000 0.00 0.00 35.63 3.20
3495 4213 6.737720 TGTAGAGGAATATGATGCAACTCT 57.262 37.500 0.00 0.00 37.56 3.24
3496 4214 6.370994 CCATGTAGAGGAATATGATGCAACTC 59.629 42.308 0.00 0.00 0.00 3.01
3497 4215 6.183361 ACCATGTAGAGGAATATGATGCAACT 60.183 38.462 0.00 0.00 0.00 3.16
3498 4216 6.000219 ACCATGTAGAGGAATATGATGCAAC 59.000 40.000 0.00 0.00 0.00 4.17
3499 4217 6.191657 ACCATGTAGAGGAATATGATGCAA 57.808 37.500 0.00 0.00 0.00 4.08
3500 4218 5.830799 ACCATGTAGAGGAATATGATGCA 57.169 39.130 0.00 0.00 0.00 3.96
3501 4219 7.559486 TGATACCATGTAGAGGAATATGATGC 58.441 38.462 0.00 0.00 0.00 3.91
3502 4220 7.710044 GCTGATACCATGTAGAGGAATATGATG 59.290 40.741 0.00 0.00 0.00 3.07
3503 4221 7.147585 GGCTGATACCATGTAGAGGAATATGAT 60.148 40.741 0.00 0.00 0.00 2.45
3504 4222 6.155221 GGCTGATACCATGTAGAGGAATATGA 59.845 42.308 0.00 0.00 0.00 2.15
3505 4223 6.155910 AGGCTGATACCATGTAGAGGAATATG 59.844 42.308 0.00 0.00 0.00 1.78
3506 4224 6.267635 AGGCTGATACCATGTAGAGGAATAT 58.732 40.000 0.00 0.00 0.00 1.28
3507 4225 5.655394 AGGCTGATACCATGTAGAGGAATA 58.345 41.667 0.00 0.00 0.00 1.75
3508 4226 4.497516 AGGCTGATACCATGTAGAGGAAT 58.502 43.478 0.00 0.00 0.00 3.01
3509 4227 3.928754 AGGCTGATACCATGTAGAGGAA 58.071 45.455 0.00 0.00 0.00 3.36
3510 4228 3.619900 AGGCTGATACCATGTAGAGGA 57.380 47.619 0.00 0.00 0.00 3.71
3511 4229 4.021016 GGTTAGGCTGATACCATGTAGAGG 60.021 50.000 0.00 0.00 32.12 3.69
3512 4230 4.021016 GGGTTAGGCTGATACCATGTAGAG 60.021 50.000 14.56 0.00 33.51 2.43
3513 4231 3.901844 GGGTTAGGCTGATACCATGTAGA 59.098 47.826 14.56 0.00 33.51 2.59
3514 4232 3.904339 AGGGTTAGGCTGATACCATGTAG 59.096 47.826 14.56 0.00 33.51 2.74
3515 4233 3.901844 GAGGGTTAGGCTGATACCATGTA 59.098 47.826 14.56 0.00 33.51 2.29
3516 4234 2.706190 GAGGGTTAGGCTGATACCATGT 59.294 50.000 14.56 2.23 33.51 3.21
3517 4235 2.289072 CGAGGGTTAGGCTGATACCATG 60.289 54.545 14.56 0.00 33.51 3.66
3518 4236 1.971357 CGAGGGTTAGGCTGATACCAT 59.029 52.381 14.56 9.19 33.51 3.55
3519 4237 1.410004 CGAGGGTTAGGCTGATACCA 58.590 55.000 14.56 0.00 33.51 3.25
3520 4238 0.680061 CCGAGGGTTAGGCTGATACC 59.320 60.000 0.00 1.72 0.00 2.73
3521 4239 1.340568 GACCGAGGGTTAGGCTGATAC 59.659 57.143 0.00 0.00 35.25 2.24
3522 4240 1.700955 GACCGAGGGTTAGGCTGATA 58.299 55.000 0.00 0.00 35.25 2.15
3523 4241 1.049289 GGACCGAGGGTTAGGCTGAT 61.049 60.000 0.00 0.00 35.25 2.90
3524 4242 1.684734 GGACCGAGGGTTAGGCTGA 60.685 63.158 0.00 0.00 35.25 4.26
3525 4243 2.732619 GGGACCGAGGGTTAGGCTG 61.733 68.421 0.00 0.00 35.25 4.85
3526 4244 2.365237 GGGACCGAGGGTTAGGCT 60.365 66.667 0.00 0.00 35.25 4.58
3527 4245 3.477346 GGGGACCGAGGGTTAGGC 61.477 72.222 0.00 0.00 40.86 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.