Multiple sequence alignment - TraesCS3A01G114400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G114400 chr3A 100.000 7388 0 0 1 7388 81713876 81706489 0.000000e+00 13644.0
1 TraesCS3A01G114400 chr3A 100.000 371 0 0 7609 7979 81706268 81705898 0.000000e+00 686.0
2 TraesCS3A01G114400 chr3B 92.445 2528 115 37 4889 7386 116117639 116115158 0.000000e+00 3541.0
3 TraesCS3A01G114400 chr3B 90.971 2625 146 28 2245 4815 116120253 116117666 0.000000e+00 3450.0
4 TraesCS3A01G114400 chr3B 90.470 1511 95 28 769 2242 116121831 116120333 0.000000e+00 1947.0
5 TraesCS3A01G114400 chr3B 86.822 129 17 0 1 129 751206418 751206290 2.320000e-30 145.0
6 TraesCS3A01G114400 chr3B 81.197 117 15 4 2518 2631 124651323 124651211 3.970000e-13 87.9
7 TraesCS3A01G114400 chr3B 81.416 113 10 6 2518 2623 157765887 157765995 1.850000e-11 82.4
8 TraesCS3A01G114400 chr3B 90.741 54 4 1 5959 6012 424577226 424577174 3.990000e-08 71.3
9 TraesCS3A01G114400 chr3B 87.097 62 6 2 7919 7979 116114826 116114766 1.440000e-07 69.4
10 TraesCS3A01G114400 chr3D 94.514 1987 80 18 5416 7388 70277735 70275764 0.000000e+00 3038.0
11 TraesCS3A01G114400 chr3D 91.124 1566 79 32 729 2242 70283133 70281576 0.000000e+00 2067.0
12 TraesCS3A01G114400 chr3D 93.167 1244 71 7 3951 5188 70279216 70277981 0.000000e+00 1814.0
13 TraesCS3A01G114400 chr3D 94.638 373 14 5 7610 7979 70275699 70275330 2.500000e-159 573.0
14 TraesCS3A01G114400 chr3D 92.837 349 15 1 3562 3900 70280991 70280643 1.550000e-136 497.0
15 TraesCS3A01G114400 chr3D 97.573 206 4 1 5215 5419 70277986 70277781 1.270000e-92 351.0
16 TraesCS3A01G114400 chr3D 90.984 244 15 4 3027 3267 70281058 70281297 9.990000e-84 322.0
17 TraesCS3A01G114400 chr3D 94.286 175 10 0 3951 4125 70279836 70279662 1.320000e-67 268.0
18 TraesCS3A01G114400 chr3D 96.330 109 4 0 2246 2354 70281508 70281400 6.360000e-41 180.0
19 TraesCS3A01G114400 chr3D 97.101 69 2 0 3889 3957 70280435 70280367 5.060000e-22 117.0
20 TraesCS3A01G114400 chr3D 83.088 136 13 3 611 737 70290759 70290625 1.820000e-21 115.0
21 TraesCS3A01G114400 chr2B 87.184 632 55 13 1 612 231633492 231632867 0.000000e+00 695.0
22 TraesCS3A01G114400 chr6B 86.284 627 56 16 1 605 585997269 585997887 0.000000e+00 654.0
23 TraesCS3A01G114400 chr6B 100.000 28 0 0 7855 7882 693099192 693099165 1.400000e-02 52.8
24 TraesCS3A01G114400 chr1B 85.227 616 61 12 1 611 296504454 296503864 2.460000e-169 606.0
25 TraesCS3A01G114400 chr1B 84.032 620 66 11 1 611 357108608 357108013 4.180000e-157 566.0
26 TraesCS3A01G114400 chr1B 74.564 287 58 14 3475 3753 406350970 406351249 2.350000e-20 111.0
27 TraesCS3A01G114400 chr1B 94.231 52 2 1 5959 6009 512673867 512673816 2.390000e-10 78.7
28 TraesCS3A01G114400 chr1B 78.689 122 14 8 2509 2623 308873165 308873049 3.990000e-08 71.3
29 TraesCS3A01G114400 chr5A 88.286 461 52 2 3293 3753 694982608 694983066 1.170000e-152 551.0
30 TraesCS3A01G114400 chr5A 82.565 499 51 15 3750 4234 694984053 694984529 2.680000e-109 407.0
31 TraesCS3A01G114400 chr5A 89.231 65 6 1 7817 7881 180343815 180343752 6.640000e-11 80.5
32 TraesCS3A01G114400 chr4B 87.852 461 52 4 3293 3753 659165341 659165797 9.110000e-149 538.0
33 TraesCS3A01G114400 chr4B 82.565 499 54 14 3750 4234 659166625 659167104 7.450000e-110 409.0
34 TraesCS3A01G114400 chr4B 87.692 65 7 1 7817 7881 69461702 69461765 3.090000e-09 75.0
35 TraesCS3A01G114400 chr4D 86.441 472 51 6 3293 3753 508694522 508694991 9.240000e-139 505.0
36 TraesCS3A01G114400 chr4D 83.166 499 52 13 3750 4234 508695806 508696286 2.060000e-115 427.0
37 TraesCS3A01G114400 chr1A 75.121 414 71 16 1 386 586055185 586054776 1.780000e-36 165.0
38 TraesCS3A01G114400 chr7A 80.110 181 28 5 2517 2697 63909048 63909220 2.340000e-25 128.0
39 TraesCS3A01G114400 chr4A 81.513 119 15 5 2523 2639 665644606 665644493 3.070000e-14 91.6
40 TraesCS3A01G114400 chr4A 78.689 122 15 8 2509 2623 648889448 648889565 3.990000e-08 71.3
41 TraesCS3A01G114400 chr4A 88.136 59 5 1 775 831 31614350 31614408 1.440000e-07 69.4
42 TraesCS3A01G114400 chr4A 86.885 61 1 5 3220 3280 669197702 669197649 2.400000e-05 62.1
43 TraesCS3A01G114400 chr7D 89.394 66 4 2 3217 3280 562440240 562440304 6.640000e-11 80.5
44 TraesCS3A01G114400 chr2A 89.231 65 6 1 7817 7881 139859698 139859761 6.640000e-11 80.5
45 TraesCS3A01G114400 chr2A 89.231 65 6 1 7817 7881 632618602 632618665 6.640000e-11 80.5
46 TraesCS3A01G114400 chr7B 80.531 113 11 8 2518 2623 231724352 231724244 8.590000e-10 76.8
47 TraesCS3A01G114400 chr7B 87.879 66 6 2 7817 7881 379727437 379727373 8.590000e-10 76.8
48 TraesCS3A01G114400 chr7B 80.556 108 11 7 2509 2609 517318225 517318329 3.090000e-09 75.0
49 TraesCS3A01G114400 chr7B 85.484 62 7 1 772 831 228009322 228009383 6.680000e-06 63.9
50 TraesCS3A01G114400 chr5B 79.508 122 14 8 2509 2623 282083094 282083211 8.590000e-10 76.8
51 TraesCS3A01G114400 chr5D 88.710 62 5 2 5950 6009 82948095 82948034 3.090000e-09 75.0
52 TraesCS3A01G114400 chr1D 100.000 36 0 0 5959 5994 382733849 382733814 5.170000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G114400 chr3A 81705898 81713876 7978 True 7165.000000 13644 100.000000 1 7979 2 chr3A.!!$R1 7978
1 TraesCS3A01G114400 chr3B 116114766 116121831 7065 True 2251.850000 3541 90.245750 769 7979 4 chr3B.!!$R4 7210
2 TraesCS3A01G114400 chr3D 70275330 70283133 7803 True 989.444444 3038 94.618889 729 7979 9 chr3D.!!$R2 7250
3 TraesCS3A01G114400 chr2B 231632867 231633492 625 True 695.000000 695 87.184000 1 612 1 chr2B.!!$R1 611
4 TraesCS3A01G114400 chr6B 585997269 585997887 618 False 654.000000 654 86.284000 1 605 1 chr6B.!!$F1 604
5 TraesCS3A01G114400 chr1B 296503864 296504454 590 True 606.000000 606 85.227000 1 611 1 chr1B.!!$R1 610
6 TraesCS3A01G114400 chr1B 357108013 357108608 595 True 566.000000 566 84.032000 1 611 1 chr1B.!!$R3 610
7 TraesCS3A01G114400 chr5A 694982608 694984529 1921 False 479.000000 551 85.425500 3293 4234 2 chr5A.!!$F1 941
8 TraesCS3A01G114400 chr4B 659165341 659167104 1763 False 473.500000 538 85.208500 3293 4234 2 chr4B.!!$F2 941
9 TraesCS3A01G114400 chr4D 508694522 508696286 1764 False 466.000000 505 84.803500 3293 4234 2 chr4D.!!$F1 941


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 673 0.099791 AAACCAAACGTGAACTGGCG 59.900 50.000 0.00 0.00 33.19 5.69 F
650 678 0.171455 AAACGTGAACTGGCGCAAAA 59.829 45.000 10.83 0.00 0.00 2.44 F
2587 2790 0.107214 CCAACACCACACAGACACCT 60.107 55.000 0.00 0.00 0.00 4.00 F
2709 2912 0.181114 TCAACTGTGAGCAAGCCACT 59.819 50.000 12.54 0.00 35.66 4.00 F
2751 2954 0.532573 TGACGACCCATGAGCTCTTC 59.467 55.000 16.19 2.86 0.00 2.87 F
4433 7057 0.179018 AAGAGGGTTGAGGCACACAC 60.179 55.000 0.00 0.00 0.00 3.82 F
5211 7839 1.142870 AGAGCAAACACCTAAGGCACA 59.857 47.619 0.00 0.00 0.00 4.57 F
6754 9481 0.322906 AAGCAAGCCTAAGCCACCTC 60.323 55.000 0.00 0.00 41.25 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 2760 0.107606 TGGTGTTGGCGTGTTGTACT 60.108 50.000 0.00 0.00 0.00 2.73 R
2624 2827 1.072266 ACTTGGAGTTGTATGGGGCA 58.928 50.000 0.00 0.00 0.00 5.36 R
4255 6878 0.178990 GCCTCTATTCCCCCGCAATT 60.179 55.000 0.00 0.00 0.00 2.32 R
4433 7057 0.734889 GGATCCAGCCACACAATTCG 59.265 55.000 6.95 0.00 0.00 3.34 R
4567 7193 1.202452 GGTCAAAGCAGCATTATGCCC 60.202 52.381 14.10 5.48 46.52 5.36 R
6018 8733 3.139077 CACACAACTTGTTACTCCCTCC 58.861 50.000 0.00 0.00 35.67 4.30 R
6832 9559 0.393808 GGAGCGGGCTTACATTCCAA 60.394 55.000 0.00 0.00 0.00 3.53 R
7677 10420 3.680777 AGGAAAAGGGGTGAAAAGACA 57.319 42.857 0.00 0.00 0.00 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.958053 TTAGATCAGATGAACATGCATACTG 57.042 36.000 0.00 3.20 0.00 2.74
41 42 7.651808 ACATGCATACTGATTGCTAAATTACC 58.348 34.615 0.00 0.00 40.77 2.85
75 76 8.231692 TCATACAGGAAACAACAAGAAATTCA 57.768 30.769 0.00 0.00 0.00 2.57
93 94 8.156165 AGAAATTCAAAATTTTAGTGATGCCCA 58.844 29.630 2.44 0.00 0.00 5.36
184 185 6.715344 AGAGCGTTAACAAATTCGTATTGA 57.285 33.333 6.39 0.00 0.00 2.57
256 257 4.436998 GACGAGCACCAGACCGGG 62.437 72.222 6.32 0.00 40.22 5.73
303 304 2.747855 GGTCAAAGGGCTGAGGCG 60.748 66.667 0.00 0.00 39.81 5.52
334 343 2.499685 CCTCCTTAACGCCGGGAG 59.500 66.667 2.18 0.00 44.36 4.30
432 447 1.588082 CAGGTTGGCTGGTTCATGC 59.412 57.895 0.00 0.00 0.00 4.06
438 453 0.251698 TGGCTGGTTCATGCATGGAA 60.252 50.000 25.97 15.62 0.00 3.53
442 457 0.322366 TGGTTCATGCATGGAAGCGA 60.322 50.000 25.97 14.54 43.69 4.93
445 460 0.677414 TTCATGCATGGAAGCGAGCA 60.677 50.000 25.97 0.55 41.73 4.26
449 464 2.719979 CATGGAAGCGAGCATGGC 59.280 61.111 0.00 0.00 41.64 4.40
478 498 2.835701 GATGCGAACAGTGGAGGCGA 62.836 60.000 0.00 0.00 0.00 5.54
481 501 1.503818 GCGAACAGTGGAGGCGAAAA 61.504 55.000 0.00 0.00 0.00 2.29
495 515 1.880646 GCGAAAACAGGTTGCCCTCTA 60.881 52.381 0.00 0.00 39.89 2.43
509 531 1.556911 CCCTCTATGCCTGAAGTGTGT 59.443 52.381 0.00 0.00 0.00 3.72
548 570 4.038883 GGCCTACAATACTACTACCTGGTG 59.961 50.000 10.23 2.08 0.00 4.17
572 594 0.407139 ATATTCATCTGGGCTGGGGC 59.593 55.000 0.00 0.00 37.82 5.80
612 640 0.384309 TACATAGCTCCGCCGTTGAG 59.616 55.000 0.00 0.00 0.00 3.02
613 641 1.141881 CATAGCTCCGCCGTTGAGT 59.858 57.895 0.00 0.00 32.31 3.41
614 642 0.384309 CATAGCTCCGCCGTTGAGTA 59.616 55.000 0.00 0.00 32.31 2.59
615 643 0.384669 ATAGCTCCGCCGTTGAGTAC 59.615 55.000 0.00 0.00 32.31 2.73
616 644 1.660560 TAGCTCCGCCGTTGAGTACC 61.661 60.000 0.00 0.00 32.31 3.34
617 645 3.003113 GCTCCGCCGTTGAGTACCT 62.003 63.158 0.00 0.00 32.31 3.08
618 646 1.153823 CTCCGCCGTTGAGTACCTG 60.154 63.158 0.00 0.00 0.00 4.00
619 647 2.125673 CCGCCGTTGAGTACCTGG 60.126 66.667 0.00 0.00 0.00 4.45
620 648 2.654877 CGCCGTTGAGTACCTGGT 59.345 61.111 4.05 4.05 0.00 4.00
621 649 1.597797 CCGCCGTTGAGTACCTGGTA 61.598 60.000 1.49 1.49 0.00 3.25
622 650 0.179145 CGCCGTTGAGTACCTGGTAG 60.179 60.000 6.84 0.00 0.00 3.18
623 651 0.175073 GCCGTTGAGTACCTGGTAGG 59.825 60.000 6.84 5.03 42.49 3.18
624 652 1.843368 CCGTTGAGTACCTGGTAGGA 58.157 55.000 6.84 0.00 37.67 2.94
625 653 2.173519 CCGTTGAGTACCTGGTAGGAA 58.826 52.381 6.84 0.00 37.67 3.36
626 654 2.564062 CCGTTGAGTACCTGGTAGGAAA 59.436 50.000 6.84 0.00 37.67 3.13
627 655 3.007182 CCGTTGAGTACCTGGTAGGAAAA 59.993 47.826 6.84 0.00 37.67 2.29
628 656 4.503643 CCGTTGAGTACCTGGTAGGAAAAA 60.504 45.833 6.84 0.00 37.67 1.94
629 657 4.450080 CGTTGAGTACCTGGTAGGAAAAAC 59.550 45.833 6.84 7.16 37.67 2.43
630 658 4.628963 TGAGTACCTGGTAGGAAAAACC 57.371 45.455 6.84 0.00 37.67 3.27
631 659 3.975312 TGAGTACCTGGTAGGAAAAACCA 59.025 43.478 6.84 0.00 44.75 3.67
632 660 4.412858 TGAGTACCTGGTAGGAAAAACCAA 59.587 41.667 6.84 0.00 46.14 3.67
633 661 5.104024 TGAGTACCTGGTAGGAAAAACCAAA 60.104 40.000 6.84 0.00 46.14 3.28
634 662 5.135383 AGTACCTGGTAGGAAAAACCAAAC 58.865 41.667 6.84 0.00 46.14 2.93
635 663 2.953648 ACCTGGTAGGAAAAACCAAACG 59.046 45.455 0.00 0.00 46.14 3.60
636 664 2.953648 CCTGGTAGGAAAAACCAAACGT 59.046 45.455 0.00 0.00 46.14 3.99
637 665 3.243267 CCTGGTAGGAAAAACCAAACGTG 60.243 47.826 0.00 0.00 46.14 4.49
638 666 3.618351 TGGTAGGAAAAACCAAACGTGA 58.382 40.909 0.00 0.00 43.99 4.35
639 667 4.015084 TGGTAGGAAAAACCAAACGTGAA 58.985 39.130 0.00 0.00 43.99 3.18
640 668 4.142425 TGGTAGGAAAAACCAAACGTGAAC 60.142 41.667 0.00 0.00 43.99 3.18
641 669 4.096833 GGTAGGAAAAACCAAACGTGAACT 59.903 41.667 0.00 0.00 42.04 3.01
642 670 4.104696 AGGAAAAACCAAACGTGAACTG 57.895 40.909 0.00 0.00 42.04 3.16
643 671 3.119280 AGGAAAAACCAAACGTGAACTGG 60.119 43.478 0.00 0.00 42.04 4.00
644 672 2.287393 AAAACCAAACGTGAACTGGC 57.713 45.000 0.00 0.00 33.19 4.85
645 673 0.099791 AAACCAAACGTGAACTGGCG 59.900 50.000 0.00 0.00 33.19 5.69
646 674 2.051345 CCAAACGTGAACTGGCGC 60.051 61.111 0.00 0.00 0.00 6.53
647 675 2.712539 CAAACGTGAACTGGCGCA 59.287 55.556 10.83 0.00 0.00 6.09
648 676 1.063327 CAAACGTGAACTGGCGCAA 59.937 52.632 10.83 0.00 0.00 4.85
649 677 0.524392 CAAACGTGAACTGGCGCAAA 60.524 50.000 10.83 0.00 0.00 3.68
650 678 0.171455 AAACGTGAACTGGCGCAAAA 59.829 45.000 10.83 0.00 0.00 2.44
651 679 0.171455 AACGTGAACTGGCGCAAAAA 59.829 45.000 10.83 0.00 0.00 1.94
692 720 2.658422 AAAAAGCGGGGCATGCAG 59.342 55.556 21.36 11.27 33.85 4.41
693 721 2.946346 AAAAAGCGGGGCATGCAGG 61.946 57.895 21.36 8.78 33.85 4.85
702 730 3.058160 GCATGCAGGCGTGGAGTT 61.058 61.111 14.21 0.00 33.81 3.01
703 731 2.629656 GCATGCAGGCGTGGAGTTT 61.630 57.895 14.21 0.00 33.81 2.66
704 732 1.959085 CATGCAGGCGTGGAGTTTT 59.041 52.632 8.72 0.00 0.00 2.43
705 733 0.387622 CATGCAGGCGTGGAGTTTTG 60.388 55.000 8.72 0.00 0.00 2.44
706 734 1.526575 ATGCAGGCGTGGAGTTTTGG 61.527 55.000 8.72 0.00 0.00 3.28
707 735 1.896660 GCAGGCGTGGAGTTTTGGA 60.897 57.895 8.72 0.00 0.00 3.53
708 736 1.244019 GCAGGCGTGGAGTTTTGGAT 61.244 55.000 8.72 0.00 0.00 3.41
709 737 0.804989 CAGGCGTGGAGTTTTGGATC 59.195 55.000 0.00 0.00 0.00 3.36
710 738 0.693049 AGGCGTGGAGTTTTGGATCT 59.307 50.000 0.00 0.00 0.00 2.75
711 739 1.906574 AGGCGTGGAGTTTTGGATCTA 59.093 47.619 0.00 0.00 0.00 1.98
712 740 2.505819 AGGCGTGGAGTTTTGGATCTAT 59.494 45.455 0.00 0.00 0.00 1.98
713 741 3.054361 AGGCGTGGAGTTTTGGATCTATT 60.054 43.478 0.00 0.00 0.00 1.73
714 742 3.312697 GGCGTGGAGTTTTGGATCTATTC 59.687 47.826 0.00 0.00 0.00 1.75
715 743 3.312697 GCGTGGAGTTTTGGATCTATTCC 59.687 47.826 0.00 0.00 45.69 3.01
716 744 4.770795 CGTGGAGTTTTGGATCTATTCCT 58.229 43.478 0.00 0.00 45.68 3.36
717 745 5.684030 GCGTGGAGTTTTGGATCTATTCCTA 60.684 44.000 0.00 0.00 45.68 2.94
718 746 6.346096 CGTGGAGTTTTGGATCTATTCCTAA 58.654 40.000 0.00 0.00 45.68 2.69
719 747 6.821665 CGTGGAGTTTTGGATCTATTCCTAAA 59.178 38.462 0.00 0.00 43.90 1.85
720 748 7.499232 CGTGGAGTTTTGGATCTATTCCTAAAT 59.501 37.037 4.92 0.00 46.33 1.40
721 749 8.624776 GTGGAGTTTTGGATCTATTCCTAAATG 58.375 37.037 4.92 0.00 46.33 2.32
722 750 7.285401 TGGAGTTTTGGATCTATTCCTAAATGC 59.715 37.037 4.92 0.42 46.33 3.56
723 751 7.285401 GGAGTTTTGGATCTATTCCTAAATGCA 59.715 37.037 4.92 0.00 46.33 3.96
724 752 8.000780 AGTTTTGGATCTATTCCTAAATGCAC 57.999 34.615 0.00 0.00 46.33 4.57
725 753 7.615365 AGTTTTGGATCTATTCCTAAATGCACA 59.385 33.333 0.00 0.00 46.33 4.57
726 754 6.942532 TTGGATCTATTCCTAAATGCACAC 57.057 37.500 0.00 0.00 45.68 3.82
727 755 5.376625 TGGATCTATTCCTAAATGCACACC 58.623 41.667 0.00 0.00 45.68 4.16
733 761 1.153353 CCTAAATGCACACCGTTCGT 58.847 50.000 0.00 0.00 0.00 3.85
734 762 1.127951 CCTAAATGCACACCGTTCGTC 59.872 52.381 0.00 0.00 0.00 4.20
736 764 1.018148 AAATGCACACCGTTCGTCAA 58.982 45.000 0.00 0.00 0.00 3.18
874 911 4.439837 GCAAATCAAAGAAGCCCTGAGATC 60.440 45.833 0.00 0.00 0.00 2.75
982 1019 4.560856 CGCGGCGGAGGAGAAGAG 62.561 72.222 15.84 0.00 0.00 2.85
1108 1148 3.847081 AGGCTACAGTACCCTAATCTCC 58.153 50.000 0.00 0.00 0.00 3.71
1127 1167 1.432270 CGCCTCTCTTTCGATTGCCC 61.432 60.000 0.00 0.00 0.00 5.36
1134 1174 3.918253 TTTCGATTGCCCGCCTGCT 62.918 57.895 0.00 0.00 0.00 4.24
1135 1175 4.838152 TCGATTGCCCGCCTGCTC 62.838 66.667 0.00 0.00 0.00 4.26
1154 1194 0.587285 CACTACCCTAGCGCGTAGAG 59.413 60.000 21.93 13.14 36.32 2.43
1205 1245 3.593771 GATTTTGGCGGGGTGGGGA 62.594 63.158 0.00 0.00 0.00 4.81
1210 1250 2.284331 GGCGGGGTGGGGAAAAAT 60.284 61.111 0.00 0.00 0.00 1.82
1321 1368 0.389948 TTCCTTTCTCGCCTTCGCTC 60.390 55.000 0.00 0.00 35.26 5.03
1333 1380 0.883833 CTTCGCTCCCATTTGCTTGT 59.116 50.000 0.00 0.00 0.00 3.16
1334 1381 0.597568 TTCGCTCCCATTTGCTTGTG 59.402 50.000 0.00 0.00 0.00 3.33
1335 1382 0.537143 TCGCTCCCATTTGCTTGTGT 60.537 50.000 0.00 0.00 0.00 3.72
1353 1400 4.283337 TGTGTCAATAATCCTCTACCGGA 58.717 43.478 9.46 0.00 37.50 5.14
1357 1404 4.022155 GTCAATAATCCTCTACCGGAGACC 60.022 50.000 9.46 0.00 44.45 3.85
1488 1547 0.895100 TGCACCACTTCCCATCTTGC 60.895 55.000 0.00 0.00 0.00 4.01
1489 1548 1.926511 GCACCACTTCCCATCTTGCG 61.927 60.000 0.00 0.00 0.00 4.85
1490 1549 0.321564 CACCACTTCCCATCTTGCGA 60.322 55.000 0.00 0.00 0.00 5.10
1491 1550 0.400213 ACCACTTCCCATCTTGCGAA 59.600 50.000 0.00 0.00 0.00 4.70
1492 1551 1.202879 ACCACTTCCCATCTTGCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
1493 1552 1.470098 CCACTTCCCATCTTGCGAAAG 59.530 52.381 0.00 0.00 0.00 2.62
1494 1553 2.426522 CACTTCCCATCTTGCGAAAGA 58.573 47.619 8.67 8.67 0.00 2.52
1495 1554 2.160417 CACTTCCCATCTTGCGAAAGAC 59.840 50.000 8.35 0.00 0.00 3.01
1496 1555 2.039084 ACTTCCCATCTTGCGAAAGACT 59.961 45.455 8.35 0.00 0.00 3.24
1497 1556 3.260884 ACTTCCCATCTTGCGAAAGACTA 59.739 43.478 8.35 0.00 0.00 2.59
1498 1557 3.247006 TCCCATCTTGCGAAAGACTAC 57.753 47.619 8.35 0.00 0.00 2.73
1499 1558 1.927174 CCCATCTTGCGAAAGACTACG 59.073 52.381 8.35 0.00 0.00 3.51
1514 1573 4.632153 AGACTACGAGCAATGTGAAGTTT 58.368 39.130 0.00 0.00 0.00 2.66
1515 1574 5.779922 AGACTACGAGCAATGTGAAGTTTA 58.220 37.500 0.00 0.00 0.00 2.01
1516 1575 6.220930 AGACTACGAGCAATGTGAAGTTTAA 58.779 36.000 0.00 0.00 0.00 1.52
1524 1594 4.937015 GCAATGTGAAGTTTAATGCCCATT 59.063 37.500 0.00 0.00 34.93 3.16
1569 1646 6.241207 GCAAGTAAGAAGTGAGTTGCAATA 57.759 37.500 0.59 0.00 46.63 1.90
1601 1678 2.718563 CCTACGGCCCAAAGTGTTTAT 58.281 47.619 0.00 0.00 0.00 1.40
1657 1744 1.350019 ACAGTTGGGCTTACCTGTACC 59.650 52.381 0.00 0.00 41.11 3.34
1679 1766 6.659824 ACCTTTTCTGAAACAAAGAGGAGTA 58.340 36.000 19.52 0.00 32.56 2.59
1711 1798 1.005450 TGGCCTGAACCTGGGATAAAC 59.995 52.381 3.32 0.00 0.00 2.01
1718 1805 5.414765 CCTGAACCTGGGATAAACTGTAAAC 59.585 44.000 0.00 0.00 0.00 2.01
1719 1806 5.942961 TGAACCTGGGATAAACTGTAAACA 58.057 37.500 0.00 0.00 0.00 2.83
1720 1807 6.548321 TGAACCTGGGATAAACTGTAAACAT 58.452 36.000 0.00 0.00 0.00 2.71
1721 1808 6.657541 TGAACCTGGGATAAACTGTAAACATC 59.342 38.462 0.00 0.00 0.00 3.06
1745 1833 2.650322 TGGTCTTGTTGGACAACCTTC 58.350 47.619 12.21 1.67 40.46 3.46
1779 1867 3.826637 GCTAGTTGCCGTAACTCCA 57.173 52.632 5.02 0.00 46.55 3.86
1786 1874 3.502211 AGTTGCCGTAACTCCATTGAAAG 59.498 43.478 0.00 0.00 46.55 2.62
1794 1882 5.163754 CGTAACTCCATTGAAAGGGCTAAAG 60.164 44.000 0.00 0.00 0.00 1.85
1814 1902 8.336801 CTAAAGCACAAGATTTAGGGTTTAGT 57.663 34.615 11.41 0.00 45.41 2.24
1815 1903 7.597288 AAAGCACAAGATTTAGGGTTTAGTT 57.403 32.000 0.00 0.00 30.31 2.24
1816 1904 8.700439 AAAGCACAAGATTTAGGGTTTAGTTA 57.300 30.769 0.00 0.00 30.31 2.24
1819 1922 9.309224 AGCACAAGATTTAGGGTTTAGTTATTT 57.691 29.630 0.00 0.00 0.00 1.40
1939 2043 7.591426 GGTAAGCATTTAACATATTGCTAGCAC 59.409 37.037 19.17 0.47 44.26 4.40
1971 2075 9.995003 ATGATTATTCAAGCTAGAAAGTAGGAG 57.005 33.333 0.00 0.00 34.96 3.69
1986 2090 9.689501 AGAAAGTAGGAGCTATAGGTACATATC 57.310 37.037 16.41 7.04 0.00 1.63
1992 2096 5.326200 AGCTATAGGTACATATCGTTGGC 57.674 43.478 2.78 3.01 0.00 4.52
1993 2097 4.103357 GCTATAGGTACATATCGTTGGCG 58.897 47.826 2.78 0.00 39.92 5.69
2033 2137 3.591527 GGAAGGGGATTTGGGGAATTTTT 59.408 43.478 0.00 0.00 0.00 1.94
2034 2138 4.567537 GGAAGGGGATTTGGGGAATTTTTG 60.568 45.833 0.00 0.00 0.00 2.44
2035 2139 3.608067 AGGGGATTTGGGGAATTTTTGT 58.392 40.909 0.00 0.00 0.00 2.83
2068 2172 1.079336 GGTTCTCGAGGGTTTCCGG 60.079 63.158 13.56 0.00 38.33 5.14
2069 2173 1.740664 GTTCTCGAGGGTTTCCGGC 60.741 63.158 13.56 0.00 38.33 6.13
2159 2263 4.944619 TCTCATTCACAGCCGAATCTAT 57.055 40.909 0.00 0.00 33.27 1.98
2215 2319 4.632153 AGCAGTGTGTAGGAGTAAAACAG 58.368 43.478 0.00 0.00 0.00 3.16
2400 2581 2.159037 CAGTGCATTCATATAGCTGCCG 59.841 50.000 0.00 0.00 33.70 5.69
2401 2582 2.037641 AGTGCATTCATATAGCTGCCGA 59.962 45.455 0.00 0.00 33.70 5.54
2531 2734 3.067742 GCTCTCCGCCCGCTTTATATATA 59.932 47.826 0.00 0.00 0.00 0.86
2557 2760 1.202710 ACGACCAACATACAGCCAACA 60.203 47.619 0.00 0.00 0.00 3.33
2587 2790 0.107214 CCAACACCACACAGACACCT 60.107 55.000 0.00 0.00 0.00 4.00
2661 2864 5.071250 TCCAAGTACACCACAGATAAACACT 59.929 40.000 0.00 0.00 0.00 3.55
2674 2877 7.223582 CACAGATAAACACTAAGCCTCACTATG 59.776 40.741 0.00 0.00 0.00 2.23
2690 2893 3.380004 CACTATGAAGTCGAAGGAGCTCT 59.620 47.826 14.64 0.00 31.97 4.09
2709 2912 0.181114 TCAACTGTGAGCAAGCCACT 59.819 50.000 12.54 0.00 35.66 4.00
2710 2913 1.416030 TCAACTGTGAGCAAGCCACTA 59.584 47.619 12.54 2.52 35.66 2.74
2711 2914 1.802960 CAACTGTGAGCAAGCCACTAG 59.197 52.381 12.54 10.73 35.66 2.57
2726 2929 3.280295 CCACTAGGAAGAGACGAAGCTA 58.720 50.000 0.00 0.00 36.89 3.32
2751 2954 0.532573 TGACGACCCATGAGCTCTTC 59.467 55.000 16.19 2.86 0.00 2.87
2783 2986 4.083484 GGGTTTCAGTTTCTAATCCGTGTG 60.083 45.833 0.00 0.00 0.00 3.82
2808 3011 8.093927 TGTAATCCTCCCATTCAAAATTTGTTC 58.906 33.333 5.56 0.00 0.00 3.18
2867 3070 6.889301 ATGCTAAACAGTAATCATCCATGG 57.111 37.500 4.97 4.97 0.00 3.66
2880 3083 4.279982 TCATCCATGGCTAGCAATTTGAA 58.720 39.130 18.24 0.00 0.00 2.69
2893 3096 4.044426 GCAATTTGAAAGTGACACCAGTC 58.956 43.478 9.77 0.00 45.19 3.51
2907 3110 3.010472 ACACCAGTCCAAATCATCCATGA 59.990 43.478 0.00 0.00 41.70 3.07
2911 3114 3.064408 CAGTCCAAATCATCCATGACACG 59.936 47.826 0.00 0.00 40.03 4.49
2937 3140 6.552008 TGACACCTCCAGGAAAGATAAAAAT 58.448 36.000 0.00 0.00 38.94 1.82
2968 3171 4.055360 CCTTCACGTTGATACAAGTCACA 58.945 43.478 0.00 0.00 0.00 3.58
2972 3175 6.223138 TCACGTTGATACAAGTCACAATTC 57.777 37.500 0.00 0.00 0.00 2.17
3012 3215 8.573035 ACACATAATTTGGTCTGAAAAATACGT 58.427 29.630 0.00 0.00 0.00 3.57
3038 3241 5.129650 AGTTAACCAGAGAAGGGAATCTAGC 59.870 44.000 0.88 0.00 0.00 3.42
3085 3288 4.662468 TCTCTGTCCACATCTATTGAGC 57.338 45.455 0.00 0.00 0.00 4.26
3086 3289 4.285020 TCTCTGTCCACATCTATTGAGCT 58.715 43.478 0.00 0.00 0.00 4.09
3102 3305 8.213679 TCTATTGAGCTAATTTTAGTGCCAGAT 58.786 33.333 0.00 0.00 33.32 2.90
3108 3311 5.296035 GCTAATTTTAGTGCCAGATTACCGT 59.704 40.000 0.00 0.00 33.32 4.83
3165 3368 6.437928 TGAATTATGTTCAACAAGTGTCAGC 58.562 36.000 0.00 0.00 0.00 4.26
3239 3442 5.591067 CCAGGGTTTGAGTTAACTTGTACAA 59.409 40.000 10.02 8.28 0.00 2.41
3260 3463 6.740110 ACAACAAGTGAAACAGTTTGTACAA 58.260 32.000 3.59 3.59 41.43 2.41
3272 3475 6.096695 ACAGTTTGTACAACCATTTTGTCAC 58.903 36.000 8.07 0.00 34.11 3.67
3278 3481 3.370104 ACAACCATTTTGTCACCCAAGA 58.630 40.909 0.00 0.00 33.75 3.02
3287 3490 2.897350 TGTCACCCAAGACCTTAGCTA 58.103 47.619 0.00 0.00 37.73 3.32
3289 3492 3.197766 TGTCACCCAAGACCTTAGCTATG 59.802 47.826 0.00 0.00 37.73 2.23
3290 3493 2.170607 TCACCCAAGACCTTAGCTATGC 59.829 50.000 0.00 0.00 0.00 3.14
3331 3538 1.268625 GTTTTCCTAACCAACTGCCCG 59.731 52.381 0.00 0.00 0.00 6.13
3334 3541 2.332654 CCTAACCAACTGCCCGCAC 61.333 63.158 0.00 0.00 0.00 5.34
3350 3557 4.007659 CCCGCACATTTTTAGTAAGGAGT 58.992 43.478 0.00 0.00 0.00 3.85
3399 3606 4.030913 TCTGATCTTAGTGAAACCGGGAT 58.969 43.478 6.32 0.00 37.80 3.85
3463 3670 6.410540 AGGCAGAGAAAGTAGACAAATTAGG 58.589 40.000 0.00 0.00 0.00 2.69
3544 3751 9.399403 GGATCTTGAATTAAGTTTGTCAAAGAC 57.601 33.333 0.00 0.00 37.65 3.01
3739 3957 8.538409 AGCACTTTATTAAATTCTTTTGCCTG 57.462 30.769 0.00 0.00 0.00 4.85
3768 4990 6.653020 TCCATATTATACTGCCATGATGGTC 58.347 40.000 13.84 6.16 40.46 4.02
3794 5016 7.428826 CAGAAGCCTAAATAAATCCAACCATC 58.571 38.462 0.00 0.00 0.00 3.51
3904 5345 0.779997 ATACATTCCCCAGGGCCATC 59.220 55.000 6.18 0.00 34.68 3.51
3960 5402 7.171678 CCAAAGATATTTTACGGTTGCCAAAAA 59.828 33.333 0.00 0.00 0.00 1.94
3978 5957 9.278978 TGCCAAAAATTATTTACCCTTTTCTTC 57.721 29.630 0.00 0.00 0.00 2.87
4086 6076 0.820226 GAAATCCTGGCAAAGGCTCC 59.180 55.000 0.00 0.00 46.92 4.70
4177 6800 3.055385 ACAGTGGCCACTATTACACGATT 60.055 43.478 37.27 9.20 40.20 3.34
4234 6857 5.981088 AACATCTGCATCCAAATAACACA 57.019 34.783 0.00 0.00 0.00 3.72
4254 6877 1.153168 CCATGACCGGGATGGACAC 60.153 63.158 24.12 0.00 45.17 3.67
4255 6878 1.601703 CATGACCGGGATGGACACA 59.398 57.895 6.32 0.00 45.17 3.72
4260 6883 0.965363 ACCGGGATGGACACAATTGC 60.965 55.000 6.32 0.00 42.00 3.56
4271 6894 1.283613 ACACAATTGCGGGGGAATAGA 59.716 47.619 5.05 0.00 0.00 1.98
4272 6895 1.949525 CACAATTGCGGGGGAATAGAG 59.050 52.381 5.05 0.00 0.00 2.43
4275 6898 1.062488 ATTGCGGGGGAATAGAGGCT 61.062 55.000 0.00 0.00 0.00 4.58
4278 6901 1.459539 CGGGGGAATAGAGGCTGGA 60.460 63.158 0.00 0.00 0.00 3.86
4385 7008 3.441011 GATTGGGCGTCGATCCCGT 62.441 63.158 17.53 10.76 46.92 5.28
4398 7021 2.972589 ATCCCGTCTGATCCCTGGGG 62.973 65.000 14.00 2.42 40.42 4.96
4410 7033 2.190578 CTGGGGATCCGAACAGGC 59.809 66.667 17.42 0.00 40.77 4.85
4433 7057 0.179018 AAGAGGGTTGAGGCACACAC 60.179 55.000 0.00 0.00 0.00 3.82
4486 7110 2.967599 TCTCTGATCATCGTGGTTGG 57.032 50.000 0.00 0.00 0.00 3.77
4611 7238 1.649664 CATTGCTTCGGAGAGGTCTG 58.350 55.000 0.00 0.00 38.43 3.51
4622 7249 1.229529 GAGGTCTGTTCCCCAGGGA 60.230 63.158 7.25 3.80 41.83 4.20
4652 7279 3.004734 GTCCACAACTAGTTGCATGCTTT 59.995 43.478 30.97 10.72 44.03 3.51
4742 7369 7.755618 TGACCTTTATATATTTCCCCCTTCTG 58.244 38.462 0.00 0.00 0.00 3.02
4755 7382 2.232208 CCCCTTCTGAATGAAAAGGCAC 59.768 50.000 0.00 0.00 38.59 5.01
4775 7402 2.032528 CTCCTGCCGGTTGCTTGA 59.967 61.111 1.90 0.00 42.00 3.02
4776 7403 1.600636 CTCCTGCCGGTTGCTTGAA 60.601 57.895 1.90 0.00 42.00 2.69
4777 7404 1.152860 TCCTGCCGGTTGCTTGAAA 60.153 52.632 1.90 0.00 42.00 2.69
4922 7549 9.439500 TTTTTGTACAAGTCACAGTAAACTAGT 57.561 29.630 8.56 0.00 0.00 2.57
4924 7551 7.578310 TGTACAAGTCACAGTAAACTAGTCT 57.422 36.000 0.00 0.00 0.00 3.24
4967 7594 7.751646 TCACCCTTCCTTTTACAATAGAAAGA 58.248 34.615 0.00 0.00 35.41 2.52
4970 7597 6.603599 CCCTTCCTTTTACAATAGAAAGAGGG 59.396 42.308 7.71 7.71 39.06 4.30
5179 7807 8.153083 AGGTGTCCTAAGTTTGTGATAGCACA 62.153 42.308 10.32 10.32 42.19 4.57
5191 7819 4.998788 GTGATAGCACACACTACATCAGA 58.001 43.478 6.17 0.00 44.51 3.27
5192 7820 5.039984 GTGATAGCACACACTACATCAGAG 58.960 45.833 6.17 0.00 44.51 3.35
5193 7821 4.949856 TGATAGCACACACTACATCAGAGA 59.050 41.667 0.00 0.00 0.00 3.10
5194 7822 3.865011 AGCACACACTACATCAGAGAG 57.135 47.619 0.00 0.00 0.00 3.20
5195 7823 2.094286 AGCACACACTACATCAGAGAGC 60.094 50.000 0.00 0.00 0.00 4.09
5196 7824 2.353109 GCACACACTACATCAGAGAGCA 60.353 50.000 0.00 0.00 0.00 4.26
5197 7825 3.862264 GCACACACTACATCAGAGAGCAA 60.862 47.826 0.00 0.00 0.00 3.91
5198 7826 4.309933 CACACACTACATCAGAGAGCAAA 58.690 43.478 0.00 0.00 0.00 3.68
5199 7827 4.151335 CACACACTACATCAGAGAGCAAAC 59.849 45.833 0.00 0.00 0.00 2.93
5200 7828 4.202253 ACACACTACATCAGAGAGCAAACA 60.202 41.667 0.00 0.00 0.00 2.83
5201 7829 4.151335 CACACTACATCAGAGAGCAAACAC 59.849 45.833 0.00 0.00 0.00 3.32
5202 7830 3.681897 CACTACATCAGAGAGCAAACACC 59.318 47.826 0.00 0.00 0.00 4.16
5203 7831 3.580458 ACTACATCAGAGAGCAAACACCT 59.420 43.478 0.00 0.00 0.00 4.00
5204 7832 4.772624 ACTACATCAGAGAGCAAACACCTA 59.227 41.667 0.00 0.00 0.00 3.08
5205 7833 4.623932 ACATCAGAGAGCAAACACCTAA 57.376 40.909 0.00 0.00 0.00 2.69
5206 7834 4.573900 ACATCAGAGAGCAAACACCTAAG 58.426 43.478 0.00 0.00 0.00 2.18
5207 7835 3.685139 TCAGAGAGCAAACACCTAAGG 57.315 47.619 0.00 0.00 0.00 2.69
5208 7836 2.079925 CAGAGAGCAAACACCTAAGGC 58.920 52.381 0.00 0.00 0.00 4.35
5209 7837 1.699634 AGAGAGCAAACACCTAAGGCA 59.300 47.619 0.00 0.00 0.00 4.75
5210 7838 1.807142 GAGAGCAAACACCTAAGGCAC 59.193 52.381 0.00 0.00 0.00 5.01
5211 7839 1.142870 AGAGCAAACACCTAAGGCACA 59.857 47.619 0.00 0.00 0.00 4.57
5212 7840 2.162681 GAGCAAACACCTAAGGCACAT 58.837 47.619 0.00 0.00 0.00 3.21
5213 7841 2.162408 GAGCAAACACCTAAGGCACATC 59.838 50.000 0.00 0.00 0.00 3.06
5297 7957 6.128363 GCGTGGTTAGAATTAAACTAGCAACT 60.128 38.462 10.33 0.00 33.20 3.16
5510 8225 7.709182 TGGTGAATAATATTACAAGAGACCACG 59.291 37.037 0.00 0.00 0.00 4.94
5562 8277 4.791334 TGGGTGAAGGAGGTATGGAAAATA 59.209 41.667 0.00 0.00 0.00 1.40
5855 8570 4.445453 CTGCCATGCAACATCTTACTCTA 58.555 43.478 0.00 0.00 38.41 2.43
6036 8751 2.044758 ACGGAGGGAGTAACAAGTTGT 58.955 47.619 1.64 1.64 0.00 3.32
6044 8759 5.763204 AGGGAGTAACAAGTTGTGTGTATTG 59.237 40.000 9.79 0.00 40.60 1.90
6134 8856 1.890876 ATACGCTTTGACTGGTTGCA 58.109 45.000 0.00 0.00 0.00 4.08
6164 8886 4.511454 TGCATTATTGTCCGTCTAGCATTC 59.489 41.667 0.00 0.00 0.00 2.67
6169 8894 2.809446 TGTCCGTCTAGCATTCATTCG 58.191 47.619 0.00 0.00 0.00 3.34
6210 8936 5.241506 ACACGATGTGAATGTGGAGAAATTT 59.758 36.000 3.61 0.00 37.92 1.82
6266 8992 4.164988 ACAGCAGATAGTGGAGCCTTTTAT 59.835 41.667 0.00 0.00 0.00 1.40
6267 8993 4.754114 CAGCAGATAGTGGAGCCTTTTATC 59.246 45.833 0.00 0.00 0.00 1.75
6268 8994 4.410228 AGCAGATAGTGGAGCCTTTTATCA 59.590 41.667 0.00 0.00 0.00 2.15
6303 9030 8.840321 TGATTCTATGCTTTGTCTTAATAAGCC 58.160 33.333 0.00 0.00 42.70 4.35
6318 9045 5.824904 AATAAGCCTGTAATGTTCAGCAG 57.175 39.130 0.00 0.00 0.00 4.24
6359 9086 1.009060 TGTGGGTAGGCAGGATAGGAA 59.991 52.381 0.00 0.00 0.00 3.36
6360 9087 1.694696 GTGGGTAGGCAGGATAGGAAG 59.305 57.143 0.00 0.00 0.00 3.46
6361 9088 1.353091 GGGTAGGCAGGATAGGAAGG 58.647 60.000 0.00 0.00 0.00 3.46
6362 9089 0.687920 GGTAGGCAGGATAGGAAGGC 59.312 60.000 0.00 0.00 0.00 4.35
6458 9185 4.122776 CTCACTCACATGGCATACCTAAC 58.877 47.826 0.00 0.00 36.63 2.34
6476 9203 5.361571 ACCTAACGAATGTGTTTTTCCCTTT 59.638 36.000 0.00 0.00 33.32 3.11
6602 9329 4.264460 TGCCAGGCGAAAATTACATTTT 57.736 36.364 7.03 0.00 44.56 1.82
6643 9370 4.586001 CCAGTTGCTATATTTGCATTCCCT 59.414 41.667 4.32 0.00 40.34 4.20
6664 9391 1.466856 TCATGATGGCAGAGGCAAAC 58.533 50.000 0.00 0.00 42.43 2.93
6668 9395 0.881118 GATGGCAGAGGCAAACGAAA 59.119 50.000 0.00 0.00 42.43 3.46
6688 9415 6.816140 ACGAAACATTTCTTCAACCAAATTGT 59.184 30.769 3.04 0.00 36.05 2.71
6708 9435 5.930837 TGTCCTGGTTTTCATCTTTGTTT 57.069 34.783 0.00 0.00 0.00 2.83
6709 9436 6.293004 TGTCCTGGTTTTCATCTTTGTTTT 57.707 33.333 0.00 0.00 0.00 2.43
6750 9477 0.405585 AGGAAAGCAAGCCTAAGCCA 59.594 50.000 0.00 0.00 41.25 4.75
6754 9481 0.322906 AAGCAAGCCTAAGCCACCTC 60.323 55.000 0.00 0.00 41.25 3.85
6786 9513 2.026449 CCAGCCTGAGTTCCTGAGAAAT 60.026 50.000 0.00 0.00 32.58 2.17
6846 9573 3.350219 TCTGACTTGGAATGTAAGCCC 57.650 47.619 0.00 0.00 0.00 5.19
6974 9707 1.731709 CGATGAAAGTGGCGATGAACA 59.268 47.619 0.00 0.00 0.00 3.18
6980 9713 1.453155 AGTGGCGATGAACAATGACC 58.547 50.000 0.00 0.00 0.00 4.02
7103 9837 2.832643 AGGTTGCATCCATGATTCCA 57.167 45.000 16.12 0.00 0.00 3.53
7130 9864 5.494618 CAGTGTATGAACGTTTTGTCGAAA 58.505 37.500 0.46 0.00 34.70 3.46
7131 9865 5.960683 CAGTGTATGAACGTTTTGTCGAAAA 59.039 36.000 0.46 0.00 34.70 2.29
7177 9911 4.448060 GGATCTAACACCGTAATAGCAAGC 59.552 45.833 0.00 0.00 0.00 4.01
7186 9920 3.000925 CCGTAATAGCAAGCGAAACGATT 59.999 43.478 12.45 0.00 35.32 3.34
7218 9954 7.040892 AGTGCAATTATGGTACTATGCAATCAG 60.041 37.037 6.78 0.00 44.39 2.90
7221 9957 7.173907 GCAATTATGGTACTATGCAATCAGAGT 59.826 37.037 1.31 0.00 45.69 3.24
7341 10081 3.521560 TCATGAGTGTCACGCTATTTCC 58.478 45.455 8.24 0.00 0.00 3.13
7345 10085 0.727398 GTGTCACGCTATTTCCTGGC 59.273 55.000 0.00 0.00 0.00 4.85
7348 10088 2.434336 TGTCACGCTATTTCCTGGCTAT 59.566 45.455 0.00 0.00 0.00 2.97
7349 10089 3.118408 TGTCACGCTATTTCCTGGCTATT 60.118 43.478 0.00 0.00 0.00 1.73
7677 10420 2.742348 AGGTTTTCACGGGTTTTCCTT 58.258 42.857 0.00 0.00 40.46 3.36
7889 10635 7.994194 ACTAAAGTTGTACTAAGGATAGGACG 58.006 38.462 0.00 0.00 44.73 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.650890 TGGTAATTTAGCAATCAGTATGCATG 58.349 34.615 10.16 0.00 46.22 4.06
41 42 7.424803 TGTTGTTTCCTGTATGAGTTTGATTG 58.575 34.615 0.00 0.00 0.00 2.67
75 76 7.174772 GGAAAACATGGGCATCACTAAAATTTT 59.825 33.333 8.75 8.75 0.00 1.82
93 94 8.164070 AGTAGGACAGTGAAATTAGGAAAACAT 58.836 33.333 0.00 0.00 0.00 2.71
160 161 7.756272 TCTCAATACGAATTTGTTAACGCTCTA 59.244 33.333 3.03 0.00 0.00 2.43
167 168 5.355910 GCCCCTCTCAATACGAATTTGTTAA 59.644 40.000 3.03 0.00 0.00 2.01
169 170 3.694566 GCCCCTCTCAATACGAATTTGTT 59.305 43.478 3.03 0.00 0.00 2.83
234 235 4.357947 TCTGGTGCTCGTCCACGC 62.358 66.667 0.00 0.00 39.60 5.34
303 304 1.002011 GGAGGGAGGAACAAGGTGC 60.002 63.158 0.00 0.00 0.00 5.01
305 306 2.643304 GTTAAGGAGGGAGGAACAAGGT 59.357 50.000 0.00 0.00 0.00 3.50
410 419 4.204028 AACCAGCCAACCTGCCGT 62.204 61.111 0.00 0.00 40.36 5.68
432 447 1.822613 AGCCATGCTCGCTTCCATG 60.823 57.895 0.00 0.00 38.78 3.66
442 457 0.401105 ATCTACTCCCCAGCCATGCT 60.401 55.000 0.00 0.00 40.77 3.79
445 460 1.762522 CGCATCTACTCCCCAGCCAT 61.763 60.000 0.00 0.00 0.00 4.40
449 464 0.824109 TGTTCGCATCTACTCCCCAG 59.176 55.000 0.00 0.00 0.00 4.45
451 466 0.824759 ACTGTTCGCATCTACTCCCC 59.175 55.000 0.00 0.00 0.00 4.81
454 469 2.480416 CCTCCACTGTTCGCATCTACTC 60.480 54.545 0.00 0.00 0.00 2.59
455 470 1.478510 CCTCCACTGTTCGCATCTACT 59.521 52.381 0.00 0.00 0.00 2.57
495 515 0.466007 TGCACACACACTTCAGGCAT 60.466 50.000 0.00 0.00 0.00 4.40
509 531 2.352821 GCCCATCAAGCCATGCACA 61.353 57.895 0.00 0.00 0.00 4.57
548 570 4.039609 CCCCAGCCCAGATGAATATTTTTC 59.960 45.833 0.00 0.00 0.00 2.29
572 594 2.449322 AGCTGAGGGGGCTATGGG 60.449 66.667 0.00 0.00 38.36 4.00
573 595 1.461075 AGAGCTGAGGGGGCTATGG 60.461 63.158 0.00 0.00 40.40 2.74
574 596 0.471591 AGAGAGCTGAGGGGGCTATG 60.472 60.000 0.00 0.00 40.40 2.23
575 597 1.162505 TAGAGAGCTGAGGGGGCTAT 58.837 55.000 0.00 0.00 40.40 2.97
576 598 0.186386 GTAGAGAGCTGAGGGGGCTA 59.814 60.000 0.00 0.00 40.40 3.93
577 599 1.075600 GTAGAGAGCTGAGGGGGCT 60.076 63.158 0.00 0.00 43.26 5.19
612 640 4.023792 CGTTTGGTTTTTCCTACCAGGTAC 60.024 45.833 0.00 0.00 45.80 3.34
613 641 4.136051 CGTTTGGTTTTTCCTACCAGGTA 58.864 43.478 0.00 0.00 45.80 3.08
614 642 2.953648 CGTTTGGTTTTTCCTACCAGGT 59.046 45.455 0.00 0.00 45.80 4.00
615 643 2.953648 ACGTTTGGTTTTTCCTACCAGG 59.046 45.455 0.00 0.00 45.80 4.45
616 644 3.628487 TCACGTTTGGTTTTTCCTACCAG 59.372 43.478 0.00 0.00 45.80 4.00
617 645 3.618351 TCACGTTTGGTTTTTCCTACCA 58.382 40.909 0.00 0.00 43.71 3.25
618 646 4.096833 AGTTCACGTTTGGTTTTTCCTACC 59.903 41.667 0.00 0.00 37.07 3.18
619 647 5.032220 CAGTTCACGTTTGGTTTTTCCTAC 58.968 41.667 0.00 0.00 37.07 3.18
620 648 4.096682 CCAGTTCACGTTTGGTTTTTCCTA 59.903 41.667 0.00 0.00 37.07 2.94
621 649 3.119280 CCAGTTCACGTTTGGTTTTTCCT 60.119 43.478 0.00 0.00 37.07 3.36
622 650 3.183754 CCAGTTCACGTTTGGTTTTTCC 58.816 45.455 0.00 0.00 0.00 3.13
623 651 2.601314 GCCAGTTCACGTTTGGTTTTTC 59.399 45.455 6.92 0.00 34.43 2.29
624 652 2.612604 GCCAGTTCACGTTTGGTTTTT 58.387 42.857 6.92 0.00 34.43 1.94
625 653 1.468395 CGCCAGTTCACGTTTGGTTTT 60.468 47.619 6.92 0.00 34.43 2.43
626 654 0.099791 CGCCAGTTCACGTTTGGTTT 59.900 50.000 6.92 0.00 34.43 3.27
627 655 1.725066 CGCCAGTTCACGTTTGGTT 59.275 52.632 6.92 0.00 34.43 3.67
628 656 2.830285 GCGCCAGTTCACGTTTGGT 61.830 57.895 0.00 0.00 34.43 3.67
629 657 2.051345 GCGCCAGTTCACGTTTGG 60.051 61.111 0.00 0.00 35.06 3.28
630 658 0.524392 TTTGCGCCAGTTCACGTTTG 60.524 50.000 4.18 0.00 0.00 2.93
631 659 0.171455 TTTTGCGCCAGTTCACGTTT 59.829 45.000 4.18 0.00 0.00 3.60
632 660 0.171455 TTTTTGCGCCAGTTCACGTT 59.829 45.000 4.18 0.00 0.00 3.99
633 661 1.803943 TTTTTGCGCCAGTTCACGT 59.196 47.368 4.18 0.00 0.00 4.49
634 662 4.700037 TTTTTGCGCCAGTTCACG 57.300 50.000 4.18 0.00 0.00 4.35
649 677 1.227118 CGTGCCGTTTGCCCTTTTT 60.227 52.632 0.00 0.00 40.16 1.94
650 678 2.415426 CGTGCCGTTTGCCCTTTT 59.585 55.556 0.00 0.00 40.16 2.27
651 679 4.279043 GCGTGCCGTTTGCCCTTT 62.279 61.111 0.00 0.00 40.16 3.11
675 703 2.658422 CTGCATGCCCCGCTTTTT 59.342 55.556 16.68 0.00 0.00 1.94
676 704 3.384532 CCTGCATGCCCCGCTTTT 61.385 61.111 16.68 0.00 0.00 2.27
685 713 2.146073 AAAACTCCACGCCTGCATGC 62.146 55.000 11.82 11.82 0.00 4.06
686 714 0.387622 CAAAACTCCACGCCTGCATG 60.388 55.000 0.00 0.00 0.00 4.06
687 715 1.526575 CCAAAACTCCACGCCTGCAT 61.527 55.000 0.00 0.00 0.00 3.96
688 716 2.192861 CCAAAACTCCACGCCTGCA 61.193 57.895 0.00 0.00 0.00 4.41
689 717 1.244019 ATCCAAAACTCCACGCCTGC 61.244 55.000 0.00 0.00 0.00 4.85
690 718 0.804989 GATCCAAAACTCCACGCCTG 59.195 55.000 0.00 0.00 0.00 4.85
691 719 0.693049 AGATCCAAAACTCCACGCCT 59.307 50.000 0.00 0.00 0.00 5.52
692 720 2.396590 TAGATCCAAAACTCCACGCC 57.603 50.000 0.00 0.00 0.00 5.68
693 721 4.537936 GAATAGATCCAAAACTCCACGC 57.462 45.455 0.00 0.00 0.00 5.34
706 734 5.057149 ACGGTGTGCATTTAGGAATAGATC 58.943 41.667 0.00 0.00 0.00 2.75
707 735 5.036117 ACGGTGTGCATTTAGGAATAGAT 57.964 39.130 0.00 0.00 0.00 1.98
708 736 4.481368 ACGGTGTGCATTTAGGAATAGA 57.519 40.909 0.00 0.00 0.00 1.98
709 737 4.260212 CGAACGGTGTGCATTTAGGAATAG 60.260 45.833 0.00 0.00 0.00 1.73
710 738 3.619483 CGAACGGTGTGCATTTAGGAATA 59.381 43.478 0.00 0.00 0.00 1.75
711 739 2.418628 CGAACGGTGTGCATTTAGGAAT 59.581 45.455 0.00 0.00 0.00 3.01
712 740 1.801771 CGAACGGTGTGCATTTAGGAA 59.198 47.619 0.00 0.00 0.00 3.36
713 741 1.270412 ACGAACGGTGTGCATTTAGGA 60.270 47.619 0.00 0.00 0.00 2.94
714 742 1.127951 GACGAACGGTGTGCATTTAGG 59.872 52.381 0.00 0.00 0.00 2.69
715 743 1.795872 TGACGAACGGTGTGCATTTAG 59.204 47.619 0.00 0.00 0.00 1.85
716 744 1.867166 TGACGAACGGTGTGCATTTA 58.133 45.000 0.00 0.00 0.00 1.40
717 745 1.018148 TTGACGAACGGTGTGCATTT 58.982 45.000 0.00 0.00 0.00 2.32
718 746 1.234821 ATTGACGAACGGTGTGCATT 58.765 45.000 0.00 0.00 0.00 3.56
719 747 1.234821 AATTGACGAACGGTGTGCAT 58.765 45.000 0.00 0.00 0.00 3.96
720 748 1.527736 GTAATTGACGAACGGTGTGCA 59.472 47.619 0.00 0.00 0.00 4.57
721 749 1.136169 GGTAATTGACGAACGGTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
722 750 2.409975 AGGTAATTGACGAACGGTGTG 58.590 47.619 0.00 0.00 0.00 3.82
723 751 2.825861 AGGTAATTGACGAACGGTGT 57.174 45.000 0.00 0.00 0.00 4.16
724 752 4.460505 GAAAAGGTAATTGACGAACGGTG 58.539 43.478 0.00 0.00 0.00 4.94
725 753 3.499537 GGAAAAGGTAATTGACGAACGGT 59.500 43.478 0.00 0.00 0.00 4.83
726 754 3.423907 CGGAAAAGGTAATTGACGAACGG 60.424 47.826 0.00 0.00 0.00 4.44
727 755 3.184986 ACGGAAAAGGTAATTGACGAACG 59.815 43.478 0.00 0.00 0.00 3.95
845 882 5.239963 CAGGGCTTCTTTGATTTGCATTTTT 59.760 36.000 0.00 0.00 0.00 1.94
863 900 0.179004 ATCTCGTCGATCTCAGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
1127 1167 1.736586 CTAGGGTAGTGAGCAGGCG 59.263 63.158 0.00 0.00 0.00 5.52
1134 1174 4.961637 TACGCGCTAGGGTAGTGA 57.038 55.556 5.73 3.13 43.60 3.41
1154 1194 1.134907 TCTAGGTTTTCCGCATCCGAC 60.135 52.381 0.00 0.00 46.35 4.79
1303 1350 1.215647 GAGCGAAGGCGAGAAAGGA 59.784 57.895 0.00 0.00 46.35 3.36
1321 1368 5.105228 AGGATTATTGACACAAGCAAATGGG 60.105 40.000 0.00 0.00 0.00 4.00
1333 1380 4.583489 GTCTCCGGTAGAGGATTATTGACA 59.417 45.833 0.00 0.00 43.44 3.58
1334 1381 4.022155 GGTCTCCGGTAGAGGATTATTGAC 60.022 50.000 0.00 0.00 43.44 3.18
1335 1382 4.150359 GGTCTCCGGTAGAGGATTATTGA 58.850 47.826 0.00 0.00 43.44 2.57
1353 1400 2.025155 CACTAGCCATCAGTACGGTCT 58.975 52.381 0.00 0.00 0.00 3.85
1357 1404 2.586258 AAGCACTAGCCATCAGTACG 57.414 50.000 0.00 0.00 43.56 3.67
1488 1547 3.242518 TCACATTGCTCGTAGTCTTTCG 58.757 45.455 0.00 0.00 0.00 3.46
1489 1548 4.686554 ACTTCACATTGCTCGTAGTCTTTC 59.313 41.667 0.00 0.00 0.00 2.62
1490 1549 4.632153 ACTTCACATTGCTCGTAGTCTTT 58.368 39.130 0.00 0.00 0.00 2.52
1491 1550 4.258702 ACTTCACATTGCTCGTAGTCTT 57.741 40.909 0.00 0.00 0.00 3.01
1492 1551 3.944055 ACTTCACATTGCTCGTAGTCT 57.056 42.857 0.00 0.00 0.00 3.24
1493 1552 4.992381 AAACTTCACATTGCTCGTAGTC 57.008 40.909 0.00 0.00 0.00 2.59
1494 1553 6.620733 GCATTAAACTTCACATTGCTCGTAGT 60.621 38.462 0.00 0.00 0.00 2.73
1495 1554 5.734498 GCATTAAACTTCACATTGCTCGTAG 59.266 40.000 0.00 0.00 0.00 3.51
1496 1555 5.391523 GGCATTAAACTTCACATTGCTCGTA 60.392 40.000 0.00 0.00 0.00 3.43
1497 1556 4.475944 GCATTAAACTTCACATTGCTCGT 58.524 39.130 0.00 0.00 0.00 4.18
1498 1557 3.853671 GGCATTAAACTTCACATTGCTCG 59.146 43.478 0.00 0.00 0.00 5.03
1499 1558 4.176271 GGGCATTAAACTTCACATTGCTC 58.824 43.478 0.00 0.00 0.00 4.26
1514 1573 4.961730 ACTGCATCCTTTTAATGGGCATTA 59.038 37.500 0.00 0.00 32.50 1.90
1515 1574 3.776417 ACTGCATCCTTTTAATGGGCATT 59.224 39.130 0.00 0.00 34.93 3.56
1516 1575 3.377573 ACTGCATCCTTTTAATGGGCAT 58.622 40.909 0.00 0.00 0.00 4.40
1524 1594 5.178797 GCTCTAACTGACTGCATCCTTTTA 58.821 41.667 0.00 0.00 0.00 1.52
1629 1706 5.585047 CAGGTAAGCCCAACTGTAGATTAAC 59.415 44.000 0.00 0.00 34.66 2.01
1630 1707 5.249852 ACAGGTAAGCCCAACTGTAGATTAA 59.750 40.000 4.09 0.00 41.95 1.40
1632 1709 3.587506 ACAGGTAAGCCCAACTGTAGATT 59.412 43.478 4.09 0.00 41.95 2.40
1633 1710 3.182152 ACAGGTAAGCCCAACTGTAGAT 58.818 45.455 4.09 0.00 41.95 1.98
1635 1712 3.369157 GGTACAGGTAAGCCCAACTGTAG 60.369 52.174 12.15 0.00 44.36 2.74
1679 1766 3.891049 GTTCAGGCCAGAACAAGGATAT 58.109 45.455 30.10 0.00 45.53 1.63
1711 1798 6.697019 CCAACAAGACCAAAAGATGTTTACAG 59.303 38.462 0.00 0.00 32.25 2.74
1718 1805 4.916983 TGTCCAACAAGACCAAAAGATG 57.083 40.909 0.00 0.00 35.83 2.90
1719 1806 4.099419 GGTTGTCCAACAAGACCAAAAGAT 59.901 41.667 11.89 0.00 39.00 2.40
1720 1807 3.445805 GGTTGTCCAACAAGACCAAAAGA 59.554 43.478 11.89 0.00 39.00 2.52
1721 1808 3.447229 AGGTTGTCCAACAAGACCAAAAG 59.553 43.478 11.89 0.00 39.00 2.27
1773 1861 3.511540 GCTTTAGCCCTTTCAATGGAGTT 59.488 43.478 0.00 0.00 34.31 3.01
1778 1866 3.940209 TGTGCTTTAGCCCTTTCAATG 57.060 42.857 0.00 0.00 41.18 2.82
1779 1867 4.151883 TCTTGTGCTTTAGCCCTTTCAAT 58.848 39.130 0.00 0.00 41.18 2.57
1786 1874 3.381590 CCCTAAATCTTGTGCTTTAGCCC 59.618 47.826 0.00 0.00 41.18 5.19
1794 1882 9.923143 AAAATAACTAAACCCTAAATCTTGTGC 57.077 29.630 0.00 0.00 0.00 4.57
1839 1942 6.373759 GGGGTCCTGGATAGAACAATAAAAT 58.626 40.000 0.00 0.00 0.00 1.82
1844 1947 2.136026 GGGGGTCCTGGATAGAACAAT 58.864 52.381 0.00 0.00 0.00 2.71
1883 1986 5.914085 ATTTGTCAAGAAACTCTGTCTCG 57.086 39.130 0.00 0.00 0.00 4.04
1969 2073 5.341617 GCCAACGATATGTACCTATAGCTC 58.658 45.833 0.00 0.00 0.00 4.09
1971 2075 4.103357 CGCCAACGATATGTACCTATAGC 58.897 47.826 0.00 0.00 43.93 2.97
1986 2090 0.449786 TGCCATACAAATCGCCAACG 59.550 50.000 0.00 0.00 42.01 4.10
1992 2096 0.937304 CGGGAGTGCCATACAAATCG 59.063 55.000 0.08 0.00 35.15 3.34
1993 2097 1.134220 TCCGGGAGTGCCATACAAATC 60.134 52.381 0.00 0.00 35.15 2.17
2044 2148 0.252103 AACCCTCGAGAACCCTAGCA 60.252 55.000 15.71 0.00 0.00 3.49
2045 2149 0.903236 AAACCCTCGAGAACCCTAGC 59.097 55.000 15.71 0.00 0.00 3.42
2046 2150 1.481363 GGAAACCCTCGAGAACCCTAG 59.519 57.143 15.71 0.00 0.00 3.02
2068 2172 6.823689 TCTCTTTCTTCCCTATACACATTTGC 59.176 38.462 0.00 0.00 0.00 3.68
2069 2173 7.824289 TGTCTCTTTCTTCCCTATACACATTTG 59.176 37.037 0.00 0.00 0.00 2.32
2159 2263 7.982919 GTGATTAATGTACCCGCACCATATATA 59.017 37.037 0.00 0.00 0.00 0.86
2242 2346 3.222173 TCAGCAAAGCTTCTGGGTTAA 57.778 42.857 13.54 0.00 36.40 2.01
2280 2461 1.523758 GTGTGCTGTCCCCTTTAGTG 58.476 55.000 0.00 0.00 0.00 2.74
2400 2581 1.882912 CCAAGGGCAAAAAGGCTTTC 58.117 50.000 13.76 0.46 40.21 2.62
2425 2606 4.472470 ACCTAACAATCCCTAAGGTGGTAC 59.528 45.833 0.00 0.00 39.10 3.34
2468 2649 4.962155 CCTTGTAGGTACTGATTCCATCC 58.038 47.826 0.00 0.00 41.52 3.51
2486 2667 1.133482 AGGGGGTCAACTGAAACCTTG 60.133 52.381 0.00 0.00 35.78 3.61
2487 2668 1.145119 GAGGGGGTCAACTGAAACCTT 59.855 52.381 0.00 0.00 35.78 3.50
2488 2669 0.771755 GAGGGGGTCAACTGAAACCT 59.228 55.000 0.00 0.00 35.78 3.50
2531 2734 2.031157 GCTGTATGTTGGTCGTTGCTTT 60.031 45.455 0.00 0.00 0.00 3.51
2557 2760 0.107606 TGGTGTTGGCGTGTTGTACT 60.108 50.000 0.00 0.00 0.00 2.73
2587 2790 1.208052 GCACCTCTGTATCTTGCCTCA 59.792 52.381 0.00 0.00 0.00 3.86
2624 2827 1.072266 ACTTGGAGTTGTATGGGGCA 58.928 50.000 0.00 0.00 0.00 5.36
2661 2864 4.098044 CCTTCGACTTCATAGTGAGGCTTA 59.902 45.833 0.00 0.00 33.84 3.09
2674 2877 2.230266 AGTTGAGAGCTCCTTCGACTTC 59.770 50.000 16.55 4.60 0.00 3.01
2690 2893 0.181114 AGTGGCTTGCTCACAGTTGA 59.819 50.000 13.60 0.00 37.58 3.18
2709 2912 3.439476 GTGTGTAGCTTCGTCTCTTCCTA 59.561 47.826 0.00 0.00 0.00 2.94
2710 2913 2.229302 GTGTGTAGCTTCGTCTCTTCCT 59.771 50.000 0.00 0.00 0.00 3.36
2711 2914 2.229302 AGTGTGTAGCTTCGTCTCTTCC 59.771 50.000 0.00 0.00 0.00 3.46
2726 2929 0.318441 CTCATGGGTCGTCAGTGTGT 59.682 55.000 0.00 0.00 0.00 3.72
2783 2986 7.275560 CGAACAAATTTTGAATGGGAGGATTAC 59.724 37.037 15.81 0.00 0.00 1.89
2867 3070 4.229876 GGTGTCACTTTCAAATTGCTAGC 58.770 43.478 8.10 8.10 0.00 3.42
2880 3083 3.576078 TGATTTGGACTGGTGTCACTT 57.424 42.857 2.35 0.00 44.61 3.16
2893 3096 3.439825 TCAACGTGTCATGGATGATTTGG 59.560 43.478 0.00 0.00 39.30 3.28
2907 3110 1.046472 TCCTGGAGGTGTCAACGTGT 61.046 55.000 0.00 0.00 36.34 4.49
2911 3114 2.930826 TCTTTCCTGGAGGTGTCAAC 57.069 50.000 0.00 0.00 36.34 3.18
2937 3140 9.146984 CTTGTATCAACGTGAAGGTTATTCTTA 57.853 33.333 0.00 0.00 0.00 2.10
2968 3171 9.905713 ATTATGTGTATGGAGTTGTGTAGAATT 57.094 29.630 0.00 0.00 0.00 2.17
2972 3175 8.397906 CCAAATTATGTGTATGGAGTTGTGTAG 58.602 37.037 0.00 0.00 32.82 2.74
3012 3215 7.147707 GCTAGATTCCCTTCTCTGGTTAACTTA 60.148 40.741 5.42 0.00 0.00 2.24
3062 3265 6.073981 AGCTCAATAGATGTGGACAGAGATA 58.926 40.000 0.00 0.00 0.00 1.98
3079 3282 7.651027 AATCTGGCACTAAAATTAGCTCAAT 57.349 32.000 0.00 0.00 34.09 2.57
3080 3283 7.067008 GGTAATCTGGCACTAAAATTAGCTCAA 59.933 37.037 0.00 0.00 34.09 3.02
3081 3284 6.542370 GGTAATCTGGCACTAAAATTAGCTCA 59.458 38.462 0.00 0.00 34.09 4.26
3082 3285 6.292919 CGGTAATCTGGCACTAAAATTAGCTC 60.293 42.308 0.00 0.00 34.09 4.09
3083 3286 5.527582 CGGTAATCTGGCACTAAAATTAGCT 59.472 40.000 0.00 0.00 34.09 3.32
3084 3287 5.296035 ACGGTAATCTGGCACTAAAATTAGC 59.704 40.000 0.13 0.00 34.09 3.09
3085 3288 6.920569 ACGGTAATCTGGCACTAAAATTAG 57.079 37.500 0.00 0.00 36.82 1.73
3086 3289 6.655848 ACAACGGTAATCTGGCACTAAAATTA 59.344 34.615 0.00 0.00 0.00 1.40
3102 3305 4.640789 AAAAATGTCAGCACAACGGTAA 57.359 36.364 0.00 0.00 35.64 2.85
3130 3333 9.554395 TGTTGAACATAATTCAGTAGTTTCTCA 57.446 29.630 0.00 0.00 0.00 3.27
3155 3358 3.979495 GCTTTTCATCTTGCTGACACTTG 59.021 43.478 0.00 0.00 0.00 3.16
3165 3368 8.158169 TGGCTATATAGTTGCTTTTCATCTTG 57.842 34.615 11.38 0.00 0.00 3.02
3205 3408 3.850098 AAACCCTGGCACCTCTGCG 62.850 63.158 0.00 0.00 45.31 5.18
3218 3421 6.439675 TGTTGTACAAGTTAACTCAAACCC 57.560 37.500 8.98 0.00 0.00 4.11
3239 3442 5.241949 TGGTTGTACAAACTGTTTCACTTGT 59.758 36.000 23.51 1.51 36.11 3.16
3243 3446 7.117092 ACAAAATGGTTGTACAAACTGTTTCAC 59.883 33.333 23.51 5.34 0.00 3.18
3244 3447 7.155328 ACAAAATGGTTGTACAAACTGTTTCA 58.845 30.769 23.51 3.38 0.00 2.69
3245 3448 7.329717 TGACAAAATGGTTGTACAAACTGTTTC 59.670 33.333 23.51 12.73 31.96 2.78
3246 3449 7.117092 GTGACAAAATGGTTGTACAAACTGTTT 59.883 33.333 23.51 19.55 31.96 2.83
3260 3463 2.091333 AGGTCTTGGGTGACAAAATGGT 60.091 45.455 0.00 0.00 38.91 3.55
3272 3475 3.144506 CATGCATAGCTAAGGTCTTGGG 58.855 50.000 0.00 0.00 0.00 4.12
3278 3481 2.441001 AGGAAGCATGCATAGCTAAGGT 59.559 45.455 21.98 7.96 42.53 3.50
3287 3490 1.760613 CCATTGGAAGGAAGCATGCAT 59.239 47.619 21.98 8.13 0.00 3.96
3289 3492 1.188863 ACCATTGGAAGGAAGCATGC 58.811 50.000 10.51 10.51 0.00 4.06
3290 3493 4.019174 ACTTACCATTGGAAGGAAGCATG 58.981 43.478 10.37 0.00 0.00 4.06
3331 3538 6.379386 GGAACACTCCTTACTAAAAATGTGC 58.621 40.000 0.00 0.00 38.88 4.57
3388 3595 7.338449 CCTTAAGATTTTCTTATCCCGGTTTCA 59.662 37.037 3.36 0.00 38.60 2.69
3389 3596 7.338703 ACCTTAAGATTTTCTTATCCCGGTTTC 59.661 37.037 3.36 0.00 38.60 2.78
3433 3640 4.219507 TGTCTACTTTCTCTGCCTTGAGAG 59.780 45.833 0.00 0.00 43.05 3.20
3463 3670 0.328258 ACAGCAAGGGTATGGTCACC 59.672 55.000 0.00 0.00 37.91 4.02
3480 3687 5.127682 TGCTGAGAAGCTACATATGAGAACA 59.872 40.000 10.38 0.00 35.49 3.18
3527 3734 8.000780 AGCTGAAAGTCTTTGACAAACTTAAT 57.999 30.769 1.60 0.00 34.60 1.40
3657 3875 6.489603 ACATGGTCATGAAAAGGTACCATAA 58.510 36.000 15.94 0.00 46.60 1.90
3739 3957 4.301072 TGGCAGTATAATATGGAAGCCC 57.699 45.455 0.00 0.00 40.08 5.19
3768 4990 5.656416 TGGTTGGATTTATTTAGGCTTCTGG 59.344 40.000 0.00 0.00 0.00 3.86
3794 5016 4.582240 GCCTAATCCCTTTTCCTCATTGAG 59.418 45.833 6.70 6.70 0.00 3.02
3904 5345 4.586841 TGTTAAATTGGAACTGAAGGTGGG 59.413 41.667 5.39 0.00 0.00 4.61
3960 5402 8.512138 CGTCACAAGAAGAAAAGGGTAAATAAT 58.488 33.333 0.00 0.00 0.00 1.28
3965 5944 5.026038 TCGTCACAAGAAGAAAAGGGTAA 57.974 39.130 0.00 0.00 29.12 2.85
4086 6076 6.596888 TGCTGAAATTGTCTCTCTAATCAAGG 59.403 38.462 0.00 0.00 0.00 3.61
4089 6079 7.333323 TCATGCTGAAATTGTCTCTCTAATCA 58.667 34.615 0.00 0.00 0.00 2.57
4177 6800 2.158769 ACAGCACTGGAACACTTCATGA 60.159 45.455 2.21 0.00 34.19 3.07
4234 6857 1.204786 TGTCCATCCCGGTCATGGTT 61.205 55.000 22.98 0.00 41.59 3.67
4254 6877 1.609208 CCTCTATTCCCCCGCAATTG 58.391 55.000 0.00 0.00 0.00 2.32
4255 6878 0.178990 GCCTCTATTCCCCCGCAATT 60.179 55.000 0.00 0.00 0.00 2.32
4260 6883 0.838122 ATCCAGCCTCTATTCCCCCG 60.838 60.000 0.00 0.00 0.00 5.73
4278 6901 2.831607 AATCCCTCTCAGGATCCCAT 57.168 50.000 8.55 0.00 46.31 4.00
4398 7021 1.069358 CTCTTAGGGCCTGTTCGGATC 59.931 57.143 18.53 0.00 33.16 3.36
4433 7057 0.734889 GGATCCAGCCACACAATTCG 59.265 55.000 6.95 0.00 0.00 3.34
4486 7110 3.879295 TGCAAAGATATAGACAAGCCTGC 59.121 43.478 0.00 0.00 0.00 4.85
4562 7188 3.699411 AAGCAGCATTATGCCCAAAAA 57.301 38.095 14.10 0.00 46.52 1.94
4567 7193 1.202452 GGTCAAAGCAGCATTATGCCC 60.202 52.381 14.10 5.48 46.52 5.36
4622 7249 4.335594 GCAACTAGTTGTGGACTCTTGTTT 59.664 41.667 30.90 0.00 42.31 2.83
4718 7345 7.985589 TCAGAAGGGGGAAATATATAAAGGTC 58.014 38.462 0.00 0.00 0.00 3.85
4742 7369 2.094854 CAGGAGCAGTGCCTTTTCATTC 60.095 50.000 12.58 0.00 32.12 2.67
4922 7549 4.456911 GTGAAAGGAATGCAGATTGACAGA 59.543 41.667 0.00 0.00 0.00 3.41
4924 7551 3.507233 GGTGAAAGGAATGCAGATTGACA 59.493 43.478 0.00 0.00 0.00 3.58
5131 7759 6.268617 CCTGGTCACTAGAGAATGGATAATGA 59.731 42.308 0.00 0.00 0.00 2.57
5179 7807 4.310769 GTGTTTGCTCTCTGATGTAGTGT 58.689 43.478 0.00 0.00 0.00 3.55
5182 7810 4.199432 AGGTGTTTGCTCTCTGATGTAG 57.801 45.455 0.00 0.00 0.00 2.74
5183 7811 5.337571 CCTTAGGTGTTTGCTCTCTGATGTA 60.338 44.000 0.00 0.00 0.00 2.29
5184 7812 4.564406 CCTTAGGTGTTTGCTCTCTGATGT 60.564 45.833 0.00 0.00 0.00 3.06
5185 7813 3.937706 CCTTAGGTGTTTGCTCTCTGATG 59.062 47.826 0.00 0.00 0.00 3.07
5186 7814 3.620966 GCCTTAGGTGTTTGCTCTCTGAT 60.621 47.826 0.00 0.00 0.00 2.90
5187 7815 2.289694 GCCTTAGGTGTTTGCTCTCTGA 60.290 50.000 0.00 0.00 0.00 3.27
5188 7816 2.079925 GCCTTAGGTGTTTGCTCTCTG 58.920 52.381 0.00 0.00 0.00 3.35
5189 7817 1.699634 TGCCTTAGGTGTTTGCTCTCT 59.300 47.619 0.00 0.00 0.00 3.10
5190 7818 1.807142 GTGCCTTAGGTGTTTGCTCTC 59.193 52.381 0.00 0.00 0.00 3.20
5191 7819 1.142870 TGTGCCTTAGGTGTTTGCTCT 59.857 47.619 0.00 0.00 0.00 4.09
5192 7820 1.604604 TGTGCCTTAGGTGTTTGCTC 58.395 50.000 0.00 0.00 0.00 4.26
5193 7821 2.162681 GATGTGCCTTAGGTGTTTGCT 58.837 47.619 0.00 0.00 0.00 3.91
5194 7822 1.202348 GGATGTGCCTTAGGTGTTTGC 59.798 52.381 0.00 0.00 0.00 3.68
5206 7834 7.445945 ACTTCTGTCTTAATATAGGATGTGCC 58.554 38.462 0.00 0.00 0.00 5.01
5207 7835 9.413048 GTACTTCTGTCTTAATATAGGATGTGC 57.587 37.037 0.00 0.00 0.00 4.57
5406 8069 8.244113 CCAAAGAAGGTGAATACTAAATTGGTC 58.756 37.037 0.00 0.00 0.00 4.02
5510 8225 7.043565 TCGTACCCAAGGTAAATAATGAAGTC 58.956 38.462 0.00 0.00 40.12 3.01
5562 8277 4.592942 TCTTGAGGAAAATAGCAGCACAT 58.407 39.130 0.00 0.00 0.00 3.21
5668 8383 4.523943 AGCCATTTTACTGCAGACAATTCA 59.476 37.500 23.35 0.00 0.00 2.57
5734 8449 6.396829 AATATCAAATAGCCAAAGACCAGC 57.603 37.500 0.00 0.00 0.00 4.85
5855 8570 4.699735 TGACTGCACCATCGTAAATTGAAT 59.300 37.500 0.00 0.00 0.00 2.57
6018 8733 3.139077 CACACAACTTGTTACTCCCTCC 58.861 50.000 0.00 0.00 35.67 4.30
6044 8759 6.818142 ACATTTGCAGTATTGAAAATAAGGGC 59.182 34.615 3.98 0.00 39.99 5.19
6134 8856 4.072131 GACGGACAATAATGCACCCATAT 58.928 43.478 0.00 0.00 0.00 1.78
6147 8869 3.804325 CGAATGAATGCTAGACGGACAAT 59.196 43.478 0.00 0.00 0.00 2.71
6210 8936 3.384168 AGCTAGATACCCACATGACCAA 58.616 45.455 0.00 0.00 0.00 3.67
6266 8992 3.713248 AGCATAGAATCAGGTGTGGATGA 59.287 43.478 0.00 0.00 0.00 2.92
6267 8993 4.082665 AGCATAGAATCAGGTGTGGATG 57.917 45.455 0.00 0.00 0.00 3.51
6268 8994 4.785346 AAGCATAGAATCAGGTGTGGAT 57.215 40.909 0.00 0.00 0.00 3.41
6303 9030 5.820131 TGAAACAACTGCTGAACATTACAG 58.180 37.500 0.00 0.00 38.27 2.74
6362 9089 3.181493 CCTAATTGTAGCAAGCAAGCCTG 60.181 47.826 0.00 0.00 34.23 4.85
6458 9185 5.335661 CCTCCTAAAGGGAAAAACACATTCG 60.336 44.000 0.00 0.00 44.58 3.34
6484 9211 1.320344 TAGTGGACTGGGCAGCTACG 61.320 60.000 0.00 0.00 0.00 3.51
6602 9329 5.551305 ACTGGCTACATGTGCAATATCTA 57.449 39.130 9.11 0.00 0.00 1.98
6643 9370 3.216800 GTTTGCCTCTGCCATCATGATA 58.783 45.455 8.15 0.00 36.33 2.15
6664 9391 7.232945 ACAATTTGGTTGAAGAAATGTTTCG 57.767 32.000 0.78 0.00 39.89 3.46
6668 9395 6.282930 CAGGACAATTTGGTTGAAGAAATGT 58.717 36.000 0.78 0.00 40.37 2.71
6708 9435 9.475620 TCCTGAAGAAGAGCGGATATATATAAA 57.524 33.333 0.00 0.00 0.00 1.40
6709 9436 9.475620 TTCCTGAAGAAGAGCGGATATATATAA 57.524 33.333 0.00 0.00 0.00 0.98
6754 9481 3.080121 AGGCTGGCTCCTCTTCGG 61.080 66.667 0.00 0.00 0.00 4.30
6786 9513 3.998341 GTGGCTTCACGGAAACTGTAATA 59.002 43.478 0.00 0.00 0.00 0.98
6832 9559 0.393808 GGAGCGGGCTTACATTCCAA 60.394 55.000 0.00 0.00 0.00 3.53
6951 9684 0.652592 CATCGCCACTTTCATCGTCC 59.347 55.000 0.00 0.00 0.00 4.79
6974 9707 6.969043 TCTTGGATATTACTGTTGGGTCATT 58.031 36.000 0.00 0.00 0.00 2.57
7087 9821 2.766828 TGCAATGGAATCATGGATGCAA 59.233 40.909 0.00 0.00 39.95 4.08
7103 9837 5.181690 ACAAAACGTTCATACACTGCAAT 57.818 34.783 0.00 0.00 0.00 3.56
7130 9864 6.591834 CCTTTTGTCAGATAGAACTCATCGTT 59.408 38.462 0.00 0.00 38.91 3.85
7131 9865 6.071334 TCCTTTTGTCAGATAGAACTCATCGT 60.071 38.462 0.00 0.00 0.00 3.73
7197 9931 8.432013 TGACTCTGATTGCATAGTACCATAATT 58.568 33.333 0.00 0.00 32.29 1.40
7218 9954 5.755861 GCCTTTGATAGGTGAATACTGACTC 59.244 44.000 0.00 0.00 46.61 3.36
7221 9957 4.473196 TGGCCTTTGATAGGTGAATACTGA 59.527 41.667 3.32 0.00 46.61 3.41
7250 9986 5.925506 TTTTGTGCAATGATCAGATGGAT 57.074 34.783 0.09 0.00 39.53 3.41
7251 9987 5.725325 TTTTTGTGCAATGATCAGATGGA 57.275 34.783 0.09 1.20 0.00 3.41
7252 9988 6.103330 TGATTTTTGTGCAATGATCAGATGG 58.897 36.000 0.09 0.00 0.00 3.51
7253 9989 7.009265 GTCTGATTTTTGTGCAATGATCAGATG 59.991 37.037 25.62 4.20 43.20 2.90
7329 10069 3.838244 AATAGCCAGGAAATAGCGTGA 57.162 42.857 0.00 0.00 0.00 4.35
7608 10351 5.170021 CCGATGAAAGGCAATGAAAATCAA 58.830 37.500 0.00 0.00 0.00 2.57
7649 10392 5.918426 AACCCGTGAAAACCTAAGAAAAA 57.082 34.783 0.00 0.00 0.00 1.94
7650 10393 5.918426 AAACCCGTGAAAACCTAAGAAAA 57.082 34.783 0.00 0.00 0.00 2.29
7677 10420 3.680777 AGGAAAAGGGGTGAAAAGACA 57.319 42.857 0.00 0.00 0.00 3.41
7752 10498 8.600625 GCTCGACATGTATAAAAGAATGTTACA 58.399 33.333 0.00 0.00 33.51 2.41
7880 10626 7.439381 TCAAAAACATATACTCCGTCCTATCC 58.561 38.462 0.00 0.00 0.00 2.59



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.