Multiple sequence alignment - TraesCS3A01G114400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G114400 | chr3A | 100.000 | 7388 | 0 | 0 | 1 | 7388 | 81713876 | 81706489 | 0.000000e+00 | 13644.0 |
1 | TraesCS3A01G114400 | chr3A | 100.000 | 371 | 0 | 0 | 7609 | 7979 | 81706268 | 81705898 | 0.000000e+00 | 686.0 |
2 | TraesCS3A01G114400 | chr3B | 92.445 | 2528 | 115 | 37 | 4889 | 7386 | 116117639 | 116115158 | 0.000000e+00 | 3541.0 |
3 | TraesCS3A01G114400 | chr3B | 90.971 | 2625 | 146 | 28 | 2245 | 4815 | 116120253 | 116117666 | 0.000000e+00 | 3450.0 |
4 | TraesCS3A01G114400 | chr3B | 90.470 | 1511 | 95 | 28 | 769 | 2242 | 116121831 | 116120333 | 0.000000e+00 | 1947.0 |
5 | TraesCS3A01G114400 | chr3B | 86.822 | 129 | 17 | 0 | 1 | 129 | 751206418 | 751206290 | 2.320000e-30 | 145.0 |
6 | TraesCS3A01G114400 | chr3B | 81.197 | 117 | 15 | 4 | 2518 | 2631 | 124651323 | 124651211 | 3.970000e-13 | 87.9 |
7 | TraesCS3A01G114400 | chr3B | 81.416 | 113 | 10 | 6 | 2518 | 2623 | 157765887 | 157765995 | 1.850000e-11 | 82.4 |
8 | TraesCS3A01G114400 | chr3B | 90.741 | 54 | 4 | 1 | 5959 | 6012 | 424577226 | 424577174 | 3.990000e-08 | 71.3 |
9 | TraesCS3A01G114400 | chr3B | 87.097 | 62 | 6 | 2 | 7919 | 7979 | 116114826 | 116114766 | 1.440000e-07 | 69.4 |
10 | TraesCS3A01G114400 | chr3D | 94.514 | 1987 | 80 | 18 | 5416 | 7388 | 70277735 | 70275764 | 0.000000e+00 | 3038.0 |
11 | TraesCS3A01G114400 | chr3D | 91.124 | 1566 | 79 | 32 | 729 | 2242 | 70283133 | 70281576 | 0.000000e+00 | 2067.0 |
12 | TraesCS3A01G114400 | chr3D | 93.167 | 1244 | 71 | 7 | 3951 | 5188 | 70279216 | 70277981 | 0.000000e+00 | 1814.0 |
13 | TraesCS3A01G114400 | chr3D | 94.638 | 373 | 14 | 5 | 7610 | 7979 | 70275699 | 70275330 | 2.500000e-159 | 573.0 |
14 | TraesCS3A01G114400 | chr3D | 92.837 | 349 | 15 | 1 | 3562 | 3900 | 70280991 | 70280643 | 1.550000e-136 | 497.0 |
15 | TraesCS3A01G114400 | chr3D | 97.573 | 206 | 4 | 1 | 5215 | 5419 | 70277986 | 70277781 | 1.270000e-92 | 351.0 |
16 | TraesCS3A01G114400 | chr3D | 90.984 | 244 | 15 | 4 | 3027 | 3267 | 70281058 | 70281297 | 9.990000e-84 | 322.0 |
17 | TraesCS3A01G114400 | chr3D | 94.286 | 175 | 10 | 0 | 3951 | 4125 | 70279836 | 70279662 | 1.320000e-67 | 268.0 |
18 | TraesCS3A01G114400 | chr3D | 96.330 | 109 | 4 | 0 | 2246 | 2354 | 70281508 | 70281400 | 6.360000e-41 | 180.0 |
19 | TraesCS3A01G114400 | chr3D | 97.101 | 69 | 2 | 0 | 3889 | 3957 | 70280435 | 70280367 | 5.060000e-22 | 117.0 |
20 | TraesCS3A01G114400 | chr3D | 83.088 | 136 | 13 | 3 | 611 | 737 | 70290759 | 70290625 | 1.820000e-21 | 115.0 |
21 | TraesCS3A01G114400 | chr2B | 87.184 | 632 | 55 | 13 | 1 | 612 | 231633492 | 231632867 | 0.000000e+00 | 695.0 |
22 | TraesCS3A01G114400 | chr6B | 86.284 | 627 | 56 | 16 | 1 | 605 | 585997269 | 585997887 | 0.000000e+00 | 654.0 |
23 | TraesCS3A01G114400 | chr6B | 100.000 | 28 | 0 | 0 | 7855 | 7882 | 693099192 | 693099165 | 1.400000e-02 | 52.8 |
24 | TraesCS3A01G114400 | chr1B | 85.227 | 616 | 61 | 12 | 1 | 611 | 296504454 | 296503864 | 2.460000e-169 | 606.0 |
25 | TraesCS3A01G114400 | chr1B | 84.032 | 620 | 66 | 11 | 1 | 611 | 357108608 | 357108013 | 4.180000e-157 | 566.0 |
26 | TraesCS3A01G114400 | chr1B | 74.564 | 287 | 58 | 14 | 3475 | 3753 | 406350970 | 406351249 | 2.350000e-20 | 111.0 |
27 | TraesCS3A01G114400 | chr1B | 94.231 | 52 | 2 | 1 | 5959 | 6009 | 512673867 | 512673816 | 2.390000e-10 | 78.7 |
28 | TraesCS3A01G114400 | chr1B | 78.689 | 122 | 14 | 8 | 2509 | 2623 | 308873165 | 308873049 | 3.990000e-08 | 71.3 |
29 | TraesCS3A01G114400 | chr5A | 88.286 | 461 | 52 | 2 | 3293 | 3753 | 694982608 | 694983066 | 1.170000e-152 | 551.0 |
30 | TraesCS3A01G114400 | chr5A | 82.565 | 499 | 51 | 15 | 3750 | 4234 | 694984053 | 694984529 | 2.680000e-109 | 407.0 |
31 | TraesCS3A01G114400 | chr5A | 89.231 | 65 | 6 | 1 | 7817 | 7881 | 180343815 | 180343752 | 6.640000e-11 | 80.5 |
32 | TraesCS3A01G114400 | chr4B | 87.852 | 461 | 52 | 4 | 3293 | 3753 | 659165341 | 659165797 | 9.110000e-149 | 538.0 |
33 | TraesCS3A01G114400 | chr4B | 82.565 | 499 | 54 | 14 | 3750 | 4234 | 659166625 | 659167104 | 7.450000e-110 | 409.0 |
34 | TraesCS3A01G114400 | chr4B | 87.692 | 65 | 7 | 1 | 7817 | 7881 | 69461702 | 69461765 | 3.090000e-09 | 75.0 |
35 | TraesCS3A01G114400 | chr4D | 86.441 | 472 | 51 | 6 | 3293 | 3753 | 508694522 | 508694991 | 9.240000e-139 | 505.0 |
36 | TraesCS3A01G114400 | chr4D | 83.166 | 499 | 52 | 13 | 3750 | 4234 | 508695806 | 508696286 | 2.060000e-115 | 427.0 |
37 | TraesCS3A01G114400 | chr1A | 75.121 | 414 | 71 | 16 | 1 | 386 | 586055185 | 586054776 | 1.780000e-36 | 165.0 |
38 | TraesCS3A01G114400 | chr7A | 80.110 | 181 | 28 | 5 | 2517 | 2697 | 63909048 | 63909220 | 2.340000e-25 | 128.0 |
39 | TraesCS3A01G114400 | chr4A | 81.513 | 119 | 15 | 5 | 2523 | 2639 | 665644606 | 665644493 | 3.070000e-14 | 91.6 |
40 | TraesCS3A01G114400 | chr4A | 78.689 | 122 | 15 | 8 | 2509 | 2623 | 648889448 | 648889565 | 3.990000e-08 | 71.3 |
41 | TraesCS3A01G114400 | chr4A | 88.136 | 59 | 5 | 1 | 775 | 831 | 31614350 | 31614408 | 1.440000e-07 | 69.4 |
42 | TraesCS3A01G114400 | chr4A | 86.885 | 61 | 1 | 5 | 3220 | 3280 | 669197702 | 669197649 | 2.400000e-05 | 62.1 |
43 | TraesCS3A01G114400 | chr7D | 89.394 | 66 | 4 | 2 | 3217 | 3280 | 562440240 | 562440304 | 6.640000e-11 | 80.5 |
44 | TraesCS3A01G114400 | chr2A | 89.231 | 65 | 6 | 1 | 7817 | 7881 | 139859698 | 139859761 | 6.640000e-11 | 80.5 |
45 | TraesCS3A01G114400 | chr2A | 89.231 | 65 | 6 | 1 | 7817 | 7881 | 632618602 | 632618665 | 6.640000e-11 | 80.5 |
46 | TraesCS3A01G114400 | chr7B | 80.531 | 113 | 11 | 8 | 2518 | 2623 | 231724352 | 231724244 | 8.590000e-10 | 76.8 |
47 | TraesCS3A01G114400 | chr7B | 87.879 | 66 | 6 | 2 | 7817 | 7881 | 379727437 | 379727373 | 8.590000e-10 | 76.8 |
48 | TraesCS3A01G114400 | chr7B | 80.556 | 108 | 11 | 7 | 2509 | 2609 | 517318225 | 517318329 | 3.090000e-09 | 75.0 |
49 | TraesCS3A01G114400 | chr7B | 85.484 | 62 | 7 | 1 | 772 | 831 | 228009322 | 228009383 | 6.680000e-06 | 63.9 |
50 | TraesCS3A01G114400 | chr5B | 79.508 | 122 | 14 | 8 | 2509 | 2623 | 282083094 | 282083211 | 8.590000e-10 | 76.8 |
51 | TraesCS3A01G114400 | chr5D | 88.710 | 62 | 5 | 2 | 5950 | 6009 | 82948095 | 82948034 | 3.090000e-09 | 75.0 |
52 | TraesCS3A01G114400 | chr1D | 100.000 | 36 | 0 | 0 | 5959 | 5994 | 382733849 | 382733814 | 5.170000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G114400 | chr3A | 81705898 | 81713876 | 7978 | True | 7165.000000 | 13644 | 100.000000 | 1 | 7979 | 2 | chr3A.!!$R1 | 7978 |
1 | TraesCS3A01G114400 | chr3B | 116114766 | 116121831 | 7065 | True | 2251.850000 | 3541 | 90.245750 | 769 | 7979 | 4 | chr3B.!!$R4 | 7210 |
2 | TraesCS3A01G114400 | chr3D | 70275330 | 70283133 | 7803 | True | 989.444444 | 3038 | 94.618889 | 729 | 7979 | 9 | chr3D.!!$R2 | 7250 |
3 | TraesCS3A01G114400 | chr2B | 231632867 | 231633492 | 625 | True | 695.000000 | 695 | 87.184000 | 1 | 612 | 1 | chr2B.!!$R1 | 611 |
4 | TraesCS3A01G114400 | chr6B | 585997269 | 585997887 | 618 | False | 654.000000 | 654 | 86.284000 | 1 | 605 | 1 | chr6B.!!$F1 | 604 |
5 | TraesCS3A01G114400 | chr1B | 296503864 | 296504454 | 590 | True | 606.000000 | 606 | 85.227000 | 1 | 611 | 1 | chr1B.!!$R1 | 610 |
6 | TraesCS3A01G114400 | chr1B | 357108013 | 357108608 | 595 | True | 566.000000 | 566 | 84.032000 | 1 | 611 | 1 | chr1B.!!$R3 | 610 |
7 | TraesCS3A01G114400 | chr5A | 694982608 | 694984529 | 1921 | False | 479.000000 | 551 | 85.425500 | 3293 | 4234 | 2 | chr5A.!!$F1 | 941 |
8 | TraesCS3A01G114400 | chr4B | 659165341 | 659167104 | 1763 | False | 473.500000 | 538 | 85.208500 | 3293 | 4234 | 2 | chr4B.!!$F2 | 941 |
9 | TraesCS3A01G114400 | chr4D | 508694522 | 508696286 | 1764 | False | 466.000000 | 505 | 84.803500 | 3293 | 4234 | 2 | chr4D.!!$F1 | 941 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
645 | 673 | 0.099791 | AAACCAAACGTGAACTGGCG | 59.900 | 50.000 | 0.00 | 0.00 | 33.19 | 5.69 | F |
650 | 678 | 0.171455 | AAACGTGAACTGGCGCAAAA | 59.829 | 45.000 | 10.83 | 0.00 | 0.00 | 2.44 | F |
2587 | 2790 | 0.107214 | CCAACACCACACAGACACCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 | F |
2709 | 2912 | 0.181114 | TCAACTGTGAGCAAGCCACT | 59.819 | 50.000 | 12.54 | 0.00 | 35.66 | 4.00 | F |
2751 | 2954 | 0.532573 | TGACGACCCATGAGCTCTTC | 59.467 | 55.000 | 16.19 | 2.86 | 0.00 | 2.87 | F |
4433 | 7057 | 0.179018 | AAGAGGGTTGAGGCACACAC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 | F |
5211 | 7839 | 1.142870 | AGAGCAAACACCTAAGGCACA | 59.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 | F |
6754 | 9481 | 0.322906 | AAGCAAGCCTAAGCCACCTC | 60.323 | 55.000 | 0.00 | 0.00 | 41.25 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2557 | 2760 | 0.107606 | TGGTGTTGGCGTGTTGTACT | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 | R |
2624 | 2827 | 1.072266 | ACTTGGAGTTGTATGGGGCA | 58.928 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 | R |
4255 | 6878 | 0.178990 | GCCTCTATTCCCCCGCAATT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 | R |
4433 | 7057 | 0.734889 | GGATCCAGCCACACAATTCG | 59.265 | 55.000 | 6.95 | 0.00 | 0.00 | 3.34 | R |
4567 | 7193 | 1.202452 | GGTCAAAGCAGCATTATGCCC | 60.202 | 52.381 | 14.10 | 5.48 | 46.52 | 5.36 | R |
6018 | 8733 | 3.139077 | CACACAACTTGTTACTCCCTCC | 58.861 | 50.000 | 0.00 | 0.00 | 35.67 | 4.30 | R |
6832 | 9559 | 0.393808 | GGAGCGGGCTTACATTCCAA | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 | R |
7677 | 10420 | 3.680777 | AGGAAAAGGGGTGAAAAGACA | 57.319 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 7.958053 | TTAGATCAGATGAACATGCATACTG | 57.042 | 36.000 | 0.00 | 3.20 | 0.00 | 2.74 |
41 | 42 | 7.651808 | ACATGCATACTGATTGCTAAATTACC | 58.348 | 34.615 | 0.00 | 0.00 | 40.77 | 2.85 |
75 | 76 | 8.231692 | TCATACAGGAAACAACAAGAAATTCA | 57.768 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
93 | 94 | 8.156165 | AGAAATTCAAAATTTTAGTGATGCCCA | 58.844 | 29.630 | 2.44 | 0.00 | 0.00 | 5.36 |
184 | 185 | 6.715344 | AGAGCGTTAACAAATTCGTATTGA | 57.285 | 33.333 | 6.39 | 0.00 | 0.00 | 2.57 |
256 | 257 | 4.436998 | GACGAGCACCAGACCGGG | 62.437 | 72.222 | 6.32 | 0.00 | 40.22 | 5.73 |
303 | 304 | 2.747855 | GGTCAAAGGGCTGAGGCG | 60.748 | 66.667 | 0.00 | 0.00 | 39.81 | 5.52 |
334 | 343 | 2.499685 | CCTCCTTAACGCCGGGAG | 59.500 | 66.667 | 2.18 | 0.00 | 44.36 | 4.30 |
432 | 447 | 1.588082 | CAGGTTGGCTGGTTCATGC | 59.412 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
438 | 453 | 0.251698 | TGGCTGGTTCATGCATGGAA | 60.252 | 50.000 | 25.97 | 15.62 | 0.00 | 3.53 |
442 | 457 | 0.322366 | TGGTTCATGCATGGAAGCGA | 60.322 | 50.000 | 25.97 | 14.54 | 43.69 | 4.93 |
445 | 460 | 0.677414 | TTCATGCATGGAAGCGAGCA | 60.677 | 50.000 | 25.97 | 0.55 | 41.73 | 4.26 |
449 | 464 | 2.719979 | CATGGAAGCGAGCATGGC | 59.280 | 61.111 | 0.00 | 0.00 | 41.64 | 4.40 |
478 | 498 | 2.835701 | GATGCGAACAGTGGAGGCGA | 62.836 | 60.000 | 0.00 | 0.00 | 0.00 | 5.54 |
481 | 501 | 1.503818 | GCGAACAGTGGAGGCGAAAA | 61.504 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
495 | 515 | 1.880646 | GCGAAAACAGGTTGCCCTCTA | 60.881 | 52.381 | 0.00 | 0.00 | 39.89 | 2.43 |
509 | 531 | 1.556911 | CCCTCTATGCCTGAAGTGTGT | 59.443 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
548 | 570 | 4.038883 | GGCCTACAATACTACTACCTGGTG | 59.961 | 50.000 | 10.23 | 2.08 | 0.00 | 4.17 |
572 | 594 | 0.407139 | ATATTCATCTGGGCTGGGGC | 59.593 | 55.000 | 0.00 | 0.00 | 37.82 | 5.80 |
612 | 640 | 0.384309 | TACATAGCTCCGCCGTTGAG | 59.616 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
613 | 641 | 1.141881 | CATAGCTCCGCCGTTGAGT | 59.858 | 57.895 | 0.00 | 0.00 | 32.31 | 3.41 |
614 | 642 | 0.384309 | CATAGCTCCGCCGTTGAGTA | 59.616 | 55.000 | 0.00 | 0.00 | 32.31 | 2.59 |
615 | 643 | 0.384669 | ATAGCTCCGCCGTTGAGTAC | 59.615 | 55.000 | 0.00 | 0.00 | 32.31 | 2.73 |
616 | 644 | 1.660560 | TAGCTCCGCCGTTGAGTACC | 61.661 | 60.000 | 0.00 | 0.00 | 32.31 | 3.34 |
617 | 645 | 3.003113 | GCTCCGCCGTTGAGTACCT | 62.003 | 63.158 | 0.00 | 0.00 | 32.31 | 3.08 |
618 | 646 | 1.153823 | CTCCGCCGTTGAGTACCTG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
619 | 647 | 2.125673 | CCGCCGTTGAGTACCTGG | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
620 | 648 | 2.654877 | CGCCGTTGAGTACCTGGT | 59.345 | 61.111 | 4.05 | 4.05 | 0.00 | 4.00 |
621 | 649 | 1.597797 | CCGCCGTTGAGTACCTGGTA | 61.598 | 60.000 | 1.49 | 1.49 | 0.00 | 3.25 |
622 | 650 | 0.179145 | CGCCGTTGAGTACCTGGTAG | 60.179 | 60.000 | 6.84 | 0.00 | 0.00 | 3.18 |
623 | 651 | 0.175073 | GCCGTTGAGTACCTGGTAGG | 59.825 | 60.000 | 6.84 | 5.03 | 42.49 | 3.18 |
624 | 652 | 1.843368 | CCGTTGAGTACCTGGTAGGA | 58.157 | 55.000 | 6.84 | 0.00 | 37.67 | 2.94 |
625 | 653 | 2.173519 | CCGTTGAGTACCTGGTAGGAA | 58.826 | 52.381 | 6.84 | 0.00 | 37.67 | 3.36 |
626 | 654 | 2.564062 | CCGTTGAGTACCTGGTAGGAAA | 59.436 | 50.000 | 6.84 | 0.00 | 37.67 | 3.13 |
627 | 655 | 3.007182 | CCGTTGAGTACCTGGTAGGAAAA | 59.993 | 47.826 | 6.84 | 0.00 | 37.67 | 2.29 |
628 | 656 | 4.503643 | CCGTTGAGTACCTGGTAGGAAAAA | 60.504 | 45.833 | 6.84 | 0.00 | 37.67 | 1.94 |
629 | 657 | 4.450080 | CGTTGAGTACCTGGTAGGAAAAAC | 59.550 | 45.833 | 6.84 | 7.16 | 37.67 | 2.43 |
630 | 658 | 4.628963 | TGAGTACCTGGTAGGAAAAACC | 57.371 | 45.455 | 6.84 | 0.00 | 37.67 | 3.27 |
631 | 659 | 3.975312 | TGAGTACCTGGTAGGAAAAACCA | 59.025 | 43.478 | 6.84 | 0.00 | 44.75 | 3.67 |
632 | 660 | 4.412858 | TGAGTACCTGGTAGGAAAAACCAA | 59.587 | 41.667 | 6.84 | 0.00 | 46.14 | 3.67 |
633 | 661 | 5.104024 | TGAGTACCTGGTAGGAAAAACCAAA | 60.104 | 40.000 | 6.84 | 0.00 | 46.14 | 3.28 |
634 | 662 | 5.135383 | AGTACCTGGTAGGAAAAACCAAAC | 58.865 | 41.667 | 6.84 | 0.00 | 46.14 | 2.93 |
635 | 663 | 2.953648 | ACCTGGTAGGAAAAACCAAACG | 59.046 | 45.455 | 0.00 | 0.00 | 46.14 | 3.60 |
636 | 664 | 2.953648 | CCTGGTAGGAAAAACCAAACGT | 59.046 | 45.455 | 0.00 | 0.00 | 46.14 | 3.99 |
637 | 665 | 3.243267 | CCTGGTAGGAAAAACCAAACGTG | 60.243 | 47.826 | 0.00 | 0.00 | 46.14 | 4.49 |
638 | 666 | 3.618351 | TGGTAGGAAAAACCAAACGTGA | 58.382 | 40.909 | 0.00 | 0.00 | 43.99 | 4.35 |
639 | 667 | 4.015084 | TGGTAGGAAAAACCAAACGTGAA | 58.985 | 39.130 | 0.00 | 0.00 | 43.99 | 3.18 |
640 | 668 | 4.142425 | TGGTAGGAAAAACCAAACGTGAAC | 60.142 | 41.667 | 0.00 | 0.00 | 43.99 | 3.18 |
641 | 669 | 4.096833 | GGTAGGAAAAACCAAACGTGAACT | 59.903 | 41.667 | 0.00 | 0.00 | 42.04 | 3.01 |
642 | 670 | 4.104696 | AGGAAAAACCAAACGTGAACTG | 57.895 | 40.909 | 0.00 | 0.00 | 42.04 | 3.16 |
643 | 671 | 3.119280 | AGGAAAAACCAAACGTGAACTGG | 60.119 | 43.478 | 0.00 | 0.00 | 42.04 | 4.00 |
644 | 672 | 2.287393 | AAAACCAAACGTGAACTGGC | 57.713 | 45.000 | 0.00 | 0.00 | 33.19 | 4.85 |
645 | 673 | 0.099791 | AAACCAAACGTGAACTGGCG | 59.900 | 50.000 | 0.00 | 0.00 | 33.19 | 5.69 |
646 | 674 | 2.051345 | CCAAACGTGAACTGGCGC | 60.051 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
647 | 675 | 2.712539 | CAAACGTGAACTGGCGCA | 59.287 | 55.556 | 10.83 | 0.00 | 0.00 | 6.09 |
648 | 676 | 1.063327 | CAAACGTGAACTGGCGCAA | 59.937 | 52.632 | 10.83 | 0.00 | 0.00 | 4.85 |
649 | 677 | 0.524392 | CAAACGTGAACTGGCGCAAA | 60.524 | 50.000 | 10.83 | 0.00 | 0.00 | 3.68 |
650 | 678 | 0.171455 | AAACGTGAACTGGCGCAAAA | 59.829 | 45.000 | 10.83 | 0.00 | 0.00 | 2.44 |
651 | 679 | 0.171455 | AACGTGAACTGGCGCAAAAA | 59.829 | 45.000 | 10.83 | 0.00 | 0.00 | 1.94 |
692 | 720 | 2.658422 | AAAAAGCGGGGCATGCAG | 59.342 | 55.556 | 21.36 | 11.27 | 33.85 | 4.41 |
693 | 721 | 2.946346 | AAAAAGCGGGGCATGCAGG | 61.946 | 57.895 | 21.36 | 8.78 | 33.85 | 4.85 |
702 | 730 | 3.058160 | GCATGCAGGCGTGGAGTT | 61.058 | 61.111 | 14.21 | 0.00 | 33.81 | 3.01 |
703 | 731 | 2.629656 | GCATGCAGGCGTGGAGTTT | 61.630 | 57.895 | 14.21 | 0.00 | 33.81 | 2.66 |
704 | 732 | 1.959085 | CATGCAGGCGTGGAGTTTT | 59.041 | 52.632 | 8.72 | 0.00 | 0.00 | 2.43 |
705 | 733 | 0.387622 | CATGCAGGCGTGGAGTTTTG | 60.388 | 55.000 | 8.72 | 0.00 | 0.00 | 2.44 |
706 | 734 | 1.526575 | ATGCAGGCGTGGAGTTTTGG | 61.527 | 55.000 | 8.72 | 0.00 | 0.00 | 3.28 |
707 | 735 | 1.896660 | GCAGGCGTGGAGTTTTGGA | 60.897 | 57.895 | 8.72 | 0.00 | 0.00 | 3.53 |
708 | 736 | 1.244019 | GCAGGCGTGGAGTTTTGGAT | 61.244 | 55.000 | 8.72 | 0.00 | 0.00 | 3.41 |
709 | 737 | 0.804989 | CAGGCGTGGAGTTTTGGATC | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
710 | 738 | 0.693049 | AGGCGTGGAGTTTTGGATCT | 59.307 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
711 | 739 | 1.906574 | AGGCGTGGAGTTTTGGATCTA | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
712 | 740 | 2.505819 | AGGCGTGGAGTTTTGGATCTAT | 59.494 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
713 | 741 | 3.054361 | AGGCGTGGAGTTTTGGATCTATT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
714 | 742 | 3.312697 | GGCGTGGAGTTTTGGATCTATTC | 59.687 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
715 | 743 | 3.312697 | GCGTGGAGTTTTGGATCTATTCC | 59.687 | 47.826 | 0.00 | 0.00 | 45.69 | 3.01 |
716 | 744 | 4.770795 | CGTGGAGTTTTGGATCTATTCCT | 58.229 | 43.478 | 0.00 | 0.00 | 45.68 | 3.36 |
717 | 745 | 5.684030 | GCGTGGAGTTTTGGATCTATTCCTA | 60.684 | 44.000 | 0.00 | 0.00 | 45.68 | 2.94 |
718 | 746 | 6.346096 | CGTGGAGTTTTGGATCTATTCCTAA | 58.654 | 40.000 | 0.00 | 0.00 | 45.68 | 2.69 |
719 | 747 | 6.821665 | CGTGGAGTTTTGGATCTATTCCTAAA | 59.178 | 38.462 | 0.00 | 0.00 | 43.90 | 1.85 |
720 | 748 | 7.499232 | CGTGGAGTTTTGGATCTATTCCTAAAT | 59.501 | 37.037 | 4.92 | 0.00 | 46.33 | 1.40 |
721 | 749 | 8.624776 | GTGGAGTTTTGGATCTATTCCTAAATG | 58.375 | 37.037 | 4.92 | 0.00 | 46.33 | 2.32 |
722 | 750 | 7.285401 | TGGAGTTTTGGATCTATTCCTAAATGC | 59.715 | 37.037 | 4.92 | 0.42 | 46.33 | 3.56 |
723 | 751 | 7.285401 | GGAGTTTTGGATCTATTCCTAAATGCA | 59.715 | 37.037 | 4.92 | 0.00 | 46.33 | 3.96 |
724 | 752 | 8.000780 | AGTTTTGGATCTATTCCTAAATGCAC | 57.999 | 34.615 | 0.00 | 0.00 | 46.33 | 4.57 |
725 | 753 | 7.615365 | AGTTTTGGATCTATTCCTAAATGCACA | 59.385 | 33.333 | 0.00 | 0.00 | 46.33 | 4.57 |
726 | 754 | 6.942532 | TTGGATCTATTCCTAAATGCACAC | 57.057 | 37.500 | 0.00 | 0.00 | 45.68 | 3.82 |
727 | 755 | 5.376625 | TGGATCTATTCCTAAATGCACACC | 58.623 | 41.667 | 0.00 | 0.00 | 45.68 | 4.16 |
733 | 761 | 1.153353 | CCTAAATGCACACCGTTCGT | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
734 | 762 | 1.127951 | CCTAAATGCACACCGTTCGTC | 59.872 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
736 | 764 | 1.018148 | AAATGCACACCGTTCGTCAA | 58.982 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
874 | 911 | 4.439837 | GCAAATCAAAGAAGCCCTGAGATC | 60.440 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
982 | 1019 | 4.560856 | CGCGGCGGAGGAGAAGAG | 62.561 | 72.222 | 15.84 | 0.00 | 0.00 | 2.85 |
1108 | 1148 | 3.847081 | AGGCTACAGTACCCTAATCTCC | 58.153 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1127 | 1167 | 1.432270 | CGCCTCTCTTTCGATTGCCC | 61.432 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1134 | 1174 | 3.918253 | TTTCGATTGCCCGCCTGCT | 62.918 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
1135 | 1175 | 4.838152 | TCGATTGCCCGCCTGCTC | 62.838 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1154 | 1194 | 0.587285 | CACTACCCTAGCGCGTAGAG | 59.413 | 60.000 | 21.93 | 13.14 | 36.32 | 2.43 |
1205 | 1245 | 3.593771 | GATTTTGGCGGGGTGGGGA | 62.594 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
1210 | 1250 | 2.284331 | GGCGGGGTGGGGAAAAAT | 60.284 | 61.111 | 0.00 | 0.00 | 0.00 | 1.82 |
1321 | 1368 | 0.389948 | TTCCTTTCTCGCCTTCGCTC | 60.390 | 55.000 | 0.00 | 0.00 | 35.26 | 5.03 |
1333 | 1380 | 0.883833 | CTTCGCTCCCATTTGCTTGT | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1334 | 1381 | 0.597568 | TTCGCTCCCATTTGCTTGTG | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1335 | 1382 | 0.537143 | TCGCTCCCATTTGCTTGTGT | 60.537 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1353 | 1400 | 4.283337 | TGTGTCAATAATCCTCTACCGGA | 58.717 | 43.478 | 9.46 | 0.00 | 37.50 | 5.14 |
1357 | 1404 | 4.022155 | GTCAATAATCCTCTACCGGAGACC | 60.022 | 50.000 | 9.46 | 0.00 | 44.45 | 3.85 |
1488 | 1547 | 0.895100 | TGCACCACTTCCCATCTTGC | 60.895 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1489 | 1548 | 1.926511 | GCACCACTTCCCATCTTGCG | 61.927 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1490 | 1549 | 0.321564 | CACCACTTCCCATCTTGCGA | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 5.10 |
1491 | 1550 | 0.400213 | ACCACTTCCCATCTTGCGAA | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1492 | 1551 | 1.202879 | ACCACTTCCCATCTTGCGAAA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
1493 | 1552 | 1.470098 | CCACTTCCCATCTTGCGAAAG | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
1494 | 1553 | 2.426522 | CACTTCCCATCTTGCGAAAGA | 58.573 | 47.619 | 8.67 | 8.67 | 0.00 | 2.52 |
1495 | 1554 | 2.160417 | CACTTCCCATCTTGCGAAAGAC | 59.840 | 50.000 | 8.35 | 0.00 | 0.00 | 3.01 |
1496 | 1555 | 2.039084 | ACTTCCCATCTTGCGAAAGACT | 59.961 | 45.455 | 8.35 | 0.00 | 0.00 | 3.24 |
1497 | 1556 | 3.260884 | ACTTCCCATCTTGCGAAAGACTA | 59.739 | 43.478 | 8.35 | 0.00 | 0.00 | 2.59 |
1498 | 1557 | 3.247006 | TCCCATCTTGCGAAAGACTAC | 57.753 | 47.619 | 8.35 | 0.00 | 0.00 | 2.73 |
1499 | 1558 | 1.927174 | CCCATCTTGCGAAAGACTACG | 59.073 | 52.381 | 8.35 | 0.00 | 0.00 | 3.51 |
1514 | 1573 | 4.632153 | AGACTACGAGCAATGTGAAGTTT | 58.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
1515 | 1574 | 5.779922 | AGACTACGAGCAATGTGAAGTTTA | 58.220 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
1516 | 1575 | 6.220930 | AGACTACGAGCAATGTGAAGTTTAA | 58.779 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1524 | 1594 | 4.937015 | GCAATGTGAAGTTTAATGCCCATT | 59.063 | 37.500 | 0.00 | 0.00 | 34.93 | 3.16 |
1569 | 1646 | 6.241207 | GCAAGTAAGAAGTGAGTTGCAATA | 57.759 | 37.500 | 0.59 | 0.00 | 46.63 | 1.90 |
1601 | 1678 | 2.718563 | CCTACGGCCCAAAGTGTTTAT | 58.281 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
1657 | 1744 | 1.350019 | ACAGTTGGGCTTACCTGTACC | 59.650 | 52.381 | 0.00 | 0.00 | 41.11 | 3.34 |
1679 | 1766 | 6.659824 | ACCTTTTCTGAAACAAAGAGGAGTA | 58.340 | 36.000 | 19.52 | 0.00 | 32.56 | 2.59 |
1711 | 1798 | 1.005450 | TGGCCTGAACCTGGGATAAAC | 59.995 | 52.381 | 3.32 | 0.00 | 0.00 | 2.01 |
1718 | 1805 | 5.414765 | CCTGAACCTGGGATAAACTGTAAAC | 59.585 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1719 | 1806 | 5.942961 | TGAACCTGGGATAAACTGTAAACA | 58.057 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1720 | 1807 | 6.548321 | TGAACCTGGGATAAACTGTAAACAT | 58.452 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1721 | 1808 | 6.657541 | TGAACCTGGGATAAACTGTAAACATC | 59.342 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
1745 | 1833 | 2.650322 | TGGTCTTGTTGGACAACCTTC | 58.350 | 47.619 | 12.21 | 1.67 | 40.46 | 3.46 |
1779 | 1867 | 3.826637 | GCTAGTTGCCGTAACTCCA | 57.173 | 52.632 | 5.02 | 0.00 | 46.55 | 3.86 |
1786 | 1874 | 3.502211 | AGTTGCCGTAACTCCATTGAAAG | 59.498 | 43.478 | 0.00 | 0.00 | 46.55 | 2.62 |
1794 | 1882 | 5.163754 | CGTAACTCCATTGAAAGGGCTAAAG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1814 | 1902 | 8.336801 | CTAAAGCACAAGATTTAGGGTTTAGT | 57.663 | 34.615 | 11.41 | 0.00 | 45.41 | 2.24 |
1815 | 1903 | 7.597288 | AAAGCACAAGATTTAGGGTTTAGTT | 57.403 | 32.000 | 0.00 | 0.00 | 30.31 | 2.24 |
1816 | 1904 | 8.700439 | AAAGCACAAGATTTAGGGTTTAGTTA | 57.300 | 30.769 | 0.00 | 0.00 | 30.31 | 2.24 |
1819 | 1922 | 9.309224 | AGCACAAGATTTAGGGTTTAGTTATTT | 57.691 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1939 | 2043 | 7.591426 | GGTAAGCATTTAACATATTGCTAGCAC | 59.409 | 37.037 | 19.17 | 0.47 | 44.26 | 4.40 |
1971 | 2075 | 9.995003 | ATGATTATTCAAGCTAGAAAGTAGGAG | 57.005 | 33.333 | 0.00 | 0.00 | 34.96 | 3.69 |
1986 | 2090 | 9.689501 | AGAAAGTAGGAGCTATAGGTACATATC | 57.310 | 37.037 | 16.41 | 7.04 | 0.00 | 1.63 |
1992 | 2096 | 5.326200 | AGCTATAGGTACATATCGTTGGC | 57.674 | 43.478 | 2.78 | 3.01 | 0.00 | 4.52 |
1993 | 2097 | 4.103357 | GCTATAGGTACATATCGTTGGCG | 58.897 | 47.826 | 2.78 | 0.00 | 39.92 | 5.69 |
2033 | 2137 | 3.591527 | GGAAGGGGATTTGGGGAATTTTT | 59.408 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
2034 | 2138 | 4.567537 | GGAAGGGGATTTGGGGAATTTTTG | 60.568 | 45.833 | 0.00 | 0.00 | 0.00 | 2.44 |
2035 | 2139 | 3.608067 | AGGGGATTTGGGGAATTTTTGT | 58.392 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2068 | 2172 | 1.079336 | GGTTCTCGAGGGTTTCCGG | 60.079 | 63.158 | 13.56 | 0.00 | 38.33 | 5.14 |
2069 | 2173 | 1.740664 | GTTCTCGAGGGTTTCCGGC | 60.741 | 63.158 | 13.56 | 0.00 | 38.33 | 6.13 |
2159 | 2263 | 4.944619 | TCTCATTCACAGCCGAATCTAT | 57.055 | 40.909 | 0.00 | 0.00 | 33.27 | 1.98 |
2215 | 2319 | 4.632153 | AGCAGTGTGTAGGAGTAAAACAG | 58.368 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2400 | 2581 | 2.159037 | CAGTGCATTCATATAGCTGCCG | 59.841 | 50.000 | 0.00 | 0.00 | 33.70 | 5.69 |
2401 | 2582 | 2.037641 | AGTGCATTCATATAGCTGCCGA | 59.962 | 45.455 | 0.00 | 0.00 | 33.70 | 5.54 |
2531 | 2734 | 3.067742 | GCTCTCCGCCCGCTTTATATATA | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 0.86 |
2557 | 2760 | 1.202710 | ACGACCAACATACAGCCAACA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
2587 | 2790 | 0.107214 | CCAACACCACACAGACACCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2661 | 2864 | 5.071250 | TCCAAGTACACCACAGATAAACACT | 59.929 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2674 | 2877 | 7.223582 | CACAGATAAACACTAAGCCTCACTATG | 59.776 | 40.741 | 0.00 | 0.00 | 0.00 | 2.23 |
2690 | 2893 | 3.380004 | CACTATGAAGTCGAAGGAGCTCT | 59.620 | 47.826 | 14.64 | 0.00 | 31.97 | 4.09 |
2709 | 2912 | 0.181114 | TCAACTGTGAGCAAGCCACT | 59.819 | 50.000 | 12.54 | 0.00 | 35.66 | 4.00 |
2710 | 2913 | 1.416030 | TCAACTGTGAGCAAGCCACTA | 59.584 | 47.619 | 12.54 | 2.52 | 35.66 | 2.74 |
2711 | 2914 | 1.802960 | CAACTGTGAGCAAGCCACTAG | 59.197 | 52.381 | 12.54 | 10.73 | 35.66 | 2.57 |
2726 | 2929 | 3.280295 | CCACTAGGAAGAGACGAAGCTA | 58.720 | 50.000 | 0.00 | 0.00 | 36.89 | 3.32 |
2751 | 2954 | 0.532573 | TGACGACCCATGAGCTCTTC | 59.467 | 55.000 | 16.19 | 2.86 | 0.00 | 2.87 |
2783 | 2986 | 4.083484 | GGGTTTCAGTTTCTAATCCGTGTG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
2808 | 3011 | 8.093927 | TGTAATCCTCCCATTCAAAATTTGTTC | 58.906 | 33.333 | 5.56 | 0.00 | 0.00 | 3.18 |
2867 | 3070 | 6.889301 | ATGCTAAACAGTAATCATCCATGG | 57.111 | 37.500 | 4.97 | 4.97 | 0.00 | 3.66 |
2880 | 3083 | 4.279982 | TCATCCATGGCTAGCAATTTGAA | 58.720 | 39.130 | 18.24 | 0.00 | 0.00 | 2.69 |
2893 | 3096 | 4.044426 | GCAATTTGAAAGTGACACCAGTC | 58.956 | 43.478 | 9.77 | 0.00 | 45.19 | 3.51 |
2907 | 3110 | 3.010472 | ACACCAGTCCAAATCATCCATGA | 59.990 | 43.478 | 0.00 | 0.00 | 41.70 | 3.07 |
2911 | 3114 | 3.064408 | CAGTCCAAATCATCCATGACACG | 59.936 | 47.826 | 0.00 | 0.00 | 40.03 | 4.49 |
2937 | 3140 | 6.552008 | TGACACCTCCAGGAAAGATAAAAAT | 58.448 | 36.000 | 0.00 | 0.00 | 38.94 | 1.82 |
2968 | 3171 | 4.055360 | CCTTCACGTTGATACAAGTCACA | 58.945 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2972 | 3175 | 6.223138 | TCACGTTGATACAAGTCACAATTC | 57.777 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
3012 | 3215 | 8.573035 | ACACATAATTTGGTCTGAAAAATACGT | 58.427 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
3038 | 3241 | 5.129650 | AGTTAACCAGAGAAGGGAATCTAGC | 59.870 | 44.000 | 0.88 | 0.00 | 0.00 | 3.42 |
3085 | 3288 | 4.662468 | TCTCTGTCCACATCTATTGAGC | 57.338 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3086 | 3289 | 4.285020 | TCTCTGTCCACATCTATTGAGCT | 58.715 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
3102 | 3305 | 8.213679 | TCTATTGAGCTAATTTTAGTGCCAGAT | 58.786 | 33.333 | 0.00 | 0.00 | 33.32 | 2.90 |
3108 | 3311 | 5.296035 | GCTAATTTTAGTGCCAGATTACCGT | 59.704 | 40.000 | 0.00 | 0.00 | 33.32 | 4.83 |
3165 | 3368 | 6.437928 | TGAATTATGTTCAACAAGTGTCAGC | 58.562 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3239 | 3442 | 5.591067 | CCAGGGTTTGAGTTAACTTGTACAA | 59.409 | 40.000 | 10.02 | 8.28 | 0.00 | 2.41 |
3260 | 3463 | 6.740110 | ACAACAAGTGAAACAGTTTGTACAA | 58.260 | 32.000 | 3.59 | 3.59 | 41.43 | 2.41 |
3272 | 3475 | 6.096695 | ACAGTTTGTACAACCATTTTGTCAC | 58.903 | 36.000 | 8.07 | 0.00 | 34.11 | 3.67 |
3278 | 3481 | 3.370104 | ACAACCATTTTGTCACCCAAGA | 58.630 | 40.909 | 0.00 | 0.00 | 33.75 | 3.02 |
3287 | 3490 | 2.897350 | TGTCACCCAAGACCTTAGCTA | 58.103 | 47.619 | 0.00 | 0.00 | 37.73 | 3.32 |
3289 | 3492 | 3.197766 | TGTCACCCAAGACCTTAGCTATG | 59.802 | 47.826 | 0.00 | 0.00 | 37.73 | 2.23 |
3290 | 3493 | 2.170607 | TCACCCAAGACCTTAGCTATGC | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3331 | 3538 | 1.268625 | GTTTTCCTAACCAACTGCCCG | 59.731 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
3334 | 3541 | 2.332654 | CCTAACCAACTGCCCGCAC | 61.333 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
3350 | 3557 | 4.007659 | CCCGCACATTTTTAGTAAGGAGT | 58.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3399 | 3606 | 4.030913 | TCTGATCTTAGTGAAACCGGGAT | 58.969 | 43.478 | 6.32 | 0.00 | 37.80 | 3.85 |
3463 | 3670 | 6.410540 | AGGCAGAGAAAGTAGACAAATTAGG | 58.589 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3544 | 3751 | 9.399403 | GGATCTTGAATTAAGTTTGTCAAAGAC | 57.601 | 33.333 | 0.00 | 0.00 | 37.65 | 3.01 |
3739 | 3957 | 8.538409 | AGCACTTTATTAAATTCTTTTGCCTG | 57.462 | 30.769 | 0.00 | 0.00 | 0.00 | 4.85 |
3768 | 4990 | 6.653020 | TCCATATTATACTGCCATGATGGTC | 58.347 | 40.000 | 13.84 | 6.16 | 40.46 | 4.02 |
3794 | 5016 | 7.428826 | CAGAAGCCTAAATAAATCCAACCATC | 58.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
3904 | 5345 | 0.779997 | ATACATTCCCCAGGGCCATC | 59.220 | 55.000 | 6.18 | 0.00 | 34.68 | 3.51 |
3960 | 5402 | 7.171678 | CCAAAGATATTTTACGGTTGCCAAAAA | 59.828 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
3978 | 5957 | 9.278978 | TGCCAAAAATTATTTACCCTTTTCTTC | 57.721 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
4086 | 6076 | 0.820226 | GAAATCCTGGCAAAGGCTCC | 59.180 | 55.000 | 0.00 | 0.00 | 46.92 | 4.70 |
4177 | 6800 | 3.055385 | ACAGTGGCCACTATTACACGATT | 60.055 | 43.478 | 37.27 | 9.20 | 40.20 | 3.34 |
4234 | 6857 | 5.981088 | AACATCTGCATCCAAATAACACA | 57.019 | 34.783 | 0.00 | 0.00 | 0.00 | 3.72 |
4254 | 6877 | 1.153168 | CCATGACCGGGATGGACAC | 60.153 | 63.158 | 24.12 | 0.00 | 45.17 | 3.67 |
4255 | 6878 | 1.601703 | CATGACCGGGATGGACACA | 59.398 | 57.895 | 6.32 | 0.00 | 45.17 | 3.72 |
4260 | 6883 | 0.965363 | ACCGGGATGGACACAATTGC | 60.965 | 55.000 | 6.32 | 0.00 | 42.00 | 3.56 |
4271 | 6894 | 1.283613 | ACACAATTGCGGGGGAATAGA | 59.716 | 47.619 | 5.05 | 0.00 | 0.00 | 1.98 |
4272 | 6895 | 1.949525 | CACAATTGCGGGGGAATAGAG | 59.050 | 52.381 | 5.05 | 0.00 | 0.00 | 2.43 |
4275 | 6898 | 1.062488 | ATTGCGGGGGAATAGAGGCT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
4278 | 6901 | 1.459539 | CGGGGGAATAGAGGCTGGA | 60.460 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
4385 | 7008 | 3.441011 | GATTGGGCGTCGATCCCGT | 62.441 | 63.158 | 17.53 | 10.76 | 46.92 | 5.28 |
4398 | 7021 | 2.972589 | ATCCCGTCTGATCCCTGGGG | 62.973 | 65.000 | 14.00 | 2.42 | 40.42 | 4.96 |
4410 | 7033 | 2.190578 | CTGGGGATCCGAACAGGC | 59.809 | 66.667 | 17.42 | 0.00 | 40.77 | 4.85 |
4433 | 7057 | 0.179018 | AAGAGGGTTGAGGCACACAC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
4486 | 7110 | 2.967599 | TCTCTGATCATCGTGGTTGG | 57.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4611 | 7238 | 1.649664 | CATTGCTTCGGAGAGGTCTG | 58.350 | 55.000 | 0.00 | 0.00 | 38.43 | 3.51 |
4622 | 7249 | 1.229529 | GAGGTCTGTTCCCCAGGGA | 60.230 | 63.158 | 7.25 | 3.80 | 41.83 | 4.20 |
4652 | 7279 | 3.004734 | GTCCACAACTAGTTGCATGCTTT | 59.995 | 43.478 | 30.97 | 10.72 | 44.03 | 3.51 |
4742 | 7369 | 7.755618 | TGACCTTTATATATTTCCCCCTTCTG | 58.244 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4755 | 7382 | 2.232208 | CCCCTTCTGAATGAAAAGGCAC | 59.768 | 50.000 | 0.00 | 0.00 | 38.59 | 5.01 |
4775 | 7402 | 2.032528 | CTCCTGCCGGTTGCTTGA | 59.967 | 61.111 | 1.90 | 0.00 | 42.00 | 3.02 |
4776 | 7403 | 1.600636 | CTCCTGCCGGTTGCTTGAA | 60.601 | 57.895 | 1.90 | 0.00 | 42.00 | 2.69 |
4777 | 7404 | 1.152860 | TCCTGCCGGTTGCTTGAAA | 60.153 | 52.632 | 1.90 | 0.00 | 42.00 | 2.69 |
4922 | 7549 | 9.439500 | TTTTTGTACAAGTCACAGTAAACTAGT | 57.561 | 29.630 | 8.56 | 0.00 | 0.00 | 2.57 |
4924 | 7551 | 7.578310 | TGTACAAGTCACAGTAAACTAGTCT | 57.422 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4967 | 7594 | 7.751646 | TCACCCTTCCTTTTACAATAGAAAGA | 58.248 | 34.615 | 0.00 | 0.00 | 35.41 | 2.52 |
4970 | 7597 | 6.603599 | CCCTTCCTTTTACAATAGAAAGAGGG | 59.396 | 42.308 | 7.71 | 7.71 | 39.06 | 4.30 |
5179 | 7807 | 8.153083 | AGGTGTCCTAAGTTTGTGATAGCACA | 62.153 | 42.308 | 10.32 | 10.32 | 42.19 | 4.57 |
5191 | 7819 | 4.998788 | GTGATAGCACACACTACATCAGA | 58.001 | 43.478 | 6.17 | 0.00 | 44.51 | 3.27 |
5192 | 7820 | 5.039984 | GTGATAGCACACACTACATCAGAG | 58.960 | 45.833 | 6.17 | 0.00 | 44.51 | 3.35 |
5193 | 7821 | 4.949856 | TGATAGCACACACTACATCAGAGA | 59.050 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
5194 | 7822 | 3.865011 | AGCACACACTACATCAGAGAG | 57.135 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
5195 | 7823 | 2.094286 | AGCACACACTACATCAGAGAGC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
5196 | 7824 | 2.353109 | GCACACACTACATCAGAGAGCA | 60.353 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5197 | 7825 | 3.862264 | GCACACACTACATCAGAGAGCAA | 60.862 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
5198 | 7826 | 4.309933 | CACACACTACATCAGAGAGCAAA | 58.690 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
5199 | 7827 | 4.151335 | CACACACTACATCAGAGAGCAAAC | 59.849 | 45.833 | 0.00 | 0.00 | 0.00 | 2.93 |
5200 | 7828 | 4.202253 | ACACACTACATCAGAGAGCAAACA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
5201 | 7829 | 4.151335 | CACACTACATCAGAGAGCAAACAC | 59.849 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
5202 | 7830 | 3.681897 | CACTACATCAGAGAGCAAACACC | 59.318 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
5203 | 7831 | 3.580458 | ACTACATCAGAGAGCAAACACCT | 59.420 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
5204 | 7832 | 4.772624 | ACTACATCAGAGAGCAAACACCTA | 59.227 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
5205 | 7833 | 4.623932 | ACATCAGAGAGCAAACACCTAA | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
5206 | 7834 | 4.573900 | ACATCAGAGAGCAAACACCTAAG | 58.426 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
5207 | 7835 | 3.685139 | TCAGAGAGCAAACACCTAAGG | 57.315 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
5208 | 7836 | 2.079925 | CAGAGAGCAAACACCTAAGGC | 58.920 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
5209 | 7837 | 1.699634 | AGAGAGCAAACACCTAAGGCA | 59.300 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
5210 | 7838 | 1.807142 | GAGAGCAAACACCTAAGGCAC | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
5211 | 7839 | 1.142870 | AGAGCAAACACCTAAGGCACA | 59.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
5212 | 7840 | 2.162681 | GAGCAAACACCTAAGGCACAT | 58.837 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
5213 | 7841 | 2.162408 | GAGCAAACACCTAAGGCACATC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5297 | 7957 | 6.128363 | GCGTGGTTAGAATTAAACTAGCAACT | 60.128 | 38.462 | 10.33 | 0.00 | 33.20 | 3.16 |
5510 | 8225 | 7.709182 | TGGTGAATAATATTACAAGAGACCACG | 59.291 | 37.037 | 0.00 | 0.00 | 0.00 | 4.94 |
5562 | 8277 | 4.791334 | TGGGTGAAGGAGGTATGGAAAATA | 59.209 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
5855 | 8570 | 4.445453 | CTGCCATGCAACATCTTACTCTA | 58.555 | 43.478 | 0.00 | 0.00 | 38.41 | 2.43 |
6036 | 8751 | 2.044758 | ACGGAGGGAGTAACAAGTTGT | 58.955 | 47.619 | 1.64 | 1.64 | 0.00 | 3.32 |
6044 | 8759 | 5.763204 | AGGGAGTAACAAGTTGTGTGTATTG | 59.237 | 40.000 | 9.79 | 0.00 | 40.60 | 1.90 |
6134 | 8856 | 1.890876 | ATACGCTTTGACTGGTTGCA | 58.109 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
6164 | 8886 | 4.511454 | TGCATTATTGTCCGTCTAGCATTC | 59.489 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
6169 | 8894 | 2.809446 | TGTCCGTCTAGCATTCATTCG | 58.191 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
6210 | 8936 | 5.241506 | ACACGATGTGAATGTGGAGAAATTT | 59.758 | 36.000 | 3.61 | 0.00 | 37.92 | 1.82 |
6266 | 8992 | 4.164988 | ACAGCAGATAGTGGAGCCTTTTAT | 59.835 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
6267 | 8993 | 4.754114 | CAGCAGATAGTGGAGCCTTTTATC | 59.246 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
6268 | 8994 | 4.410228 | AGCAGATAGTGGAGCCTTTTATCA | 59.590 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
6303 | 9030 | 8.840321 | TGATTCTATGCTTTGTCTTAATAAGCC | 58.160 | 33.333 | 0.00 | 0.00 | 42.70 | 4.35 |
6318 | 9045 | 5.824904 | AATAAGCCTGTAATGTTCAGCAG | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
6359 | 9086 | 1.009060 | TGTGGGTAGGCAGGATAGGAA | 59.991 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
6360 | 9087 | 1.694696 | GTGGGTAGGCAGGATAGGAAG | 59.305 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
6361 | 9088 | 1.353091 | GGGTAGGCAGGATAGGAAGG | 58.647 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
6362 | 9089 | 0.687920 | GGTAGGCAGGATAGGAAGGC | 59.312 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
6458 | 9185 | 4.122776 | CTCACTCACATGGCATACCTAAC | 58.877 | 47.826 | 0.00 | 0.00 | 36.63 | 2.34 |
6476 | 9203 | 5.361571 | ACCTAACGAATGTGTTTTTCCCTTT | 59.638 | 36.000 | 0.00 | 0.00 | 33.32 | 3.11 |
6602 | 9329 | 4.264460 | TGCCAGGCGAAAATTACATTTT | 57.736 | 36.364 | 7.03 | 0.00 | 44.56 | 1.82 |
6643 | 9370 | 4.586001 | CCAGTTGCTATATTTGCATTCCCT | 59.414 | 41.667 | 4.32 | 0.00 | 40.34 | 4.20 |
6664 | 9391 | 1.466856 | TCATGATGGCAGAGGCAAAC | 58.533 | 50.000 | 0.00 | 0.00 | 42.43 | 2.93 |
6668 | 9395 | 0.881118 | GATGGCAGAGGCAAACGAAA | 59.119 | 50.000 | 0.00 | 0.00 | 42.43 | 3.46 |
6688 | 9415 | 6.816140 | ACGAAACATTTCTTCAACCAAATTGT | 59.184 | 30.769 | 3.04 | 0.00 | 36.05 | 2.71 |
6708 | 9435 | 5.930837 | TGTCCTGGTTTTCATCTTTGTTT | 57.069 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
6709 | 9436 | 6.293004 | TGTCCTGGTTTTCATCTTTGTTTT | 57.707 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
6750 | 9477 | 0.405585 | AGGAAAGCAAGCCTAAGCCA | 59.594 | 50.000 | 0.00 | 0.00 | 41.25 | 4.75 |
6754 | 9481 | 0.322906 | AAGCAAGCCTAAGCCACCTC | 60.323 | 55.000 | 0.00 | 0.00 | 41.25 | 3.85 |
6786 | 9513 | 2.026449 | CCAGCCTGAGTTCCTGAGAAAT | 60.026 | 50.000 | 0.00 | 0.00 | 32.58 | 2.17 |
6846 | 9573 | 3.350219 | TCTGACTTGGAATGTAAGCCC | 57.650 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
6974 | 9707 | 1.731709 | CGATGAAAGTGGCGATGAACA | 59.268 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
6980 | 9713 | 1.453155 | AGTGGCGATGAACAATGACC | 58.547 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7103 | 9837 | 2.832643 | AGGTTGCATCCATGATTCCA | 57.167 | 45.000 | 16.12 | 0.00 | 0.00 | 3.53 |
7130 | 9864 | 5.494618 | CAGTGTATGAACGTTTTGTCGAAA | 58.505 | 37.500 | 0.46 | 0.00 | 34.70 | 3.46 |
7131 | 9865 | 5.960683 | CAGTGTATGAACGTTTTGTCGAAAA | 59.039 | 36.000 | 0.46 | 0.00 | 34.70 | 2.29 |
7177 | 9911 | 4.448060 | GGATCTAACACCGTAATAGCAAGC | 59.552 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
7186 | 9920 | 3.000925 | CCGTAATAGCAAGCGAAACGATT | 59.999 | 43.478 | 12.45 | 0.00 | 35.32 | 3.34 |
7218 | 9954 | 7.040892 | AGTGCAATTATGGTACTATGCAATCAG | 60.041 | 37.037 | 6.78 | 0.00 | 44.39 | 2.90 |
7221 | 9957 | 7.173907 | GCAATTATGGTACTATGCAATCAGAGT | 59.826 | 37.037 | 1.31 | 0.00 | 45.69 | 3.24 |
7341 | 10081 | 3.521560 | TCATGAGTGTCACGCTATTTCC | 58.478 | 45.455 | 8.24 | 0.00 | 0.00 | 3.13 |
7345 | 10085 | 0.727398 | GTGTCACGCTATTTCCTGGC | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
7348 | 10088 | 2.434336 | TGTCACGCTATTTCCTGGCTAT | 59.566 | 45.455 | 0.00 | 0.00 | 0.00 | 2.97 |
7349 | 10089 | 3.118408 | TGTCACGCTATTTCCTGGCTATT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
7677 | 10420 | 2.742348 | AGGTTTTCACGGGTTTTCCTT | 58.258 | 42.857 | 0.00 | 0.00 | 40.46 | 3.36 |
7889 | 10635 | 7.994194 | ACTAAAGTTGTACTAAGGATAGGACG | 58.006 | 38.462 | 0.00 | 0.00 | 44.73 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 7.650890 | TGGTAATTTAGCAATCAGTATGCATG | 58.349 | 34.615 | 10.16 | 0.00 | 46.22 | 4.06 |
41 | 42 | 7.424803 | TGTTGTTTCCTGTATGAGTTTGATTG | 58.575 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
75 | 76 | 7.174772 | GGAAAACATGGGCATCACTAAAATTTT | 59.825 | 33.333 | 8.75 | 8.75 | 0.00 | 1.82 |
93 | 94 | 8.164070 | AGTAGGACAGTGAAATTAGGAAAACAT | 58.836 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
160 | 161 | 7.756272 | TCTCAATACGAATTTGTTAACGCTCTA | 59.244 | 33.333 | 3.03 | 0.00 | 0.00 | 2.43 |
167 | 168 | 5.355910 | GCCCCTCTCAATACGAATTTGTTAA | 59.644 | 40.000 | 3.03 | 0.00 | 0.00 | 2.01 |
169 | 170 | 3.694566 | GCCCCTCTCAATACGAATTTGTT | 59.305 | 43.478 | 3.03 | 0.00 | 0.00 | 2.83 |
234 | 235 | 4.357947 | TCTGGTGCTCGTCCACGC | 62.358 | 66.667 | 0.00 | 0.00 | 39.60 | 5.34 |
303 | 304 | 1.002011 | GGAGGGAGGAACAAGGTGC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
305 | 306 | 2.643304 | GTTAAGGAGGGAGGAACAAGGT | 59.357 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
410 | 419 | 4.204028 | AACCAGCCAACCTGCCGT | 62.204 | 61.111 | 0.00 | 0.00 | 40.36 | 5.68 |
432 | 447 | 1.822613 | AGCCATGCTCGCTTCCATG | 60.823 | 57.895 | 0.00 | 0.00 | 38.78 | 3.66 |
442 | 457 | 0.401105 | ATCTACTCCCCAGCCATGCT | 60.401 | 55.000 | 0.00 | 0.00 | 40.77 | 3.79 |
445 | 460 | 1.762522 | CGCATCTACTCCCCAGCCAT | 61.763 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
449 | 464 | 0.824109 | TGTTCGCATCTACTCCCCAG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
451 | 466 | 0.824759 | ACTGTTCGCATCTACTCCCC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
454 | 469 | 2.480416 | CCTCCACTGTTCGCATCTACTC | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
455 | 470 | 1.478510 | CCTCCACTGTTCGCATCTACT | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
495 | 515 | 0.466007 | TGCACACACACTTCAGGCAT | 60.466 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
509 | 531 | 2.352821 | GCCCATCAAGCCATGCACA | 61.353 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
548 | 570 | 4.039609 | CCCCAGCCCAGATGAATATTTTTC | 59.960 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
572 | 594 | 2.449322 | AGCTGAGGGGGCTATGGG | 60.449 | 66.667 | 0.00 | 0.00 | 38.36 | 4.00 |
573 | 595 | 1.461075 | AGAGCTGAGGGGGCTATGG | 60.461 | 63.158 | 0.00 | 0.00 | 40.40 | 2.74 |
574 | 596 | 0.471591 | AGAGAGCTGAGGGGGCTATG | 60.472 | 60.000 | 0.00 | 0.00 | 40.40 | 2.23 |
575 | 597 | 1.162505 | TAGAGAGCTGAGGGGGCTAT | 58.837 | 55.000 | 0.00 | 0.00 | 40.40 | 2.97 |
576 | 598 | 0.186386 | GTAGAGAGCTGAGGGGGCTA | 59.814 | 60.000 | 0.00 | 0.00 | 40.40 | 3.93 |
577 | 599 | 1.075600 | GTAGAGAGCTGAGGGGGCT | 60.076 | 63.158 | 0.00 | 0.00 | 43.26 | 5.19 |
612 | 640 | 4.023792 | CGTTTGGTTTTTCCTACCAGGTAC | 60.024 | 45.833 | 0.00 | 0.00 | 45.80 | 3.34 |
613 | 641 | 4.136051 | CGTTTGGTTTTTCCTACCAGGTA | 58.864 | 43.478 | 0.00 | 0.00 | 45.80 | 3.08 |
614 | 642 | 2.953648 | CGTTTGGTTTTTCCTACCAGGT | 59.046 | 45.455 | 0.00 | 0.00 | 45.80 | 4.00 |
615 | 643 | 2.953648 | ACGTTTGGTTTTTCCTACCAGG | 59.046 | 45.455 | 0.00 | 0.00 | 45.80 | 4.45 |
616 | 644 | 3.628487 | TCACGTTTGGTTTTTCCTACCAG | 59.372 | 43.478 | 0.00 | 0.00 | 45.80 | 4.00 |
617 | 645 | 3.618351 | TCACGTTTGGTTTTTCCTACCA | 58.382 | 40.909 | 0.00 | 0.00 | 43.71 | 3.25 |
618 | 646 | 4.096833 | AGTTCACGTTTGGTTTTTCCTACC | 59.903 | 41.667 | 0.00 | 0.00 | 37.07 | 3.18 |
619 | 647 | 5.032220 | CAGTTCACGTTTGGTTTTTCCTAC | 58.968 | 41.667 | 0.00 | 0.00 | 37.07 | 3.18 |
620 | 648 | 4.096682 | CCAGTTCACGTTTGGTTTTTCCTA | 59.903 | 41.667 | 0.00 | 0.00 | 37.07 | 2.94 |
621 | 649 | 3.119280 | CCAGTTCACGTTTGGTTTTTCCT | 60.119 | 43.478 | 0.00 | 0.00 | 37.07 | 3.36 |
622 | 650 | 3.183754 | CCAGTTCACGTTTGGTTTTTCC | 58.816 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
623 | 651 | 2.601314 | GCCAGTTCACGTTTGGTTTTTC | 59.399 | 45.455 | 6.92 | 0.00 | 34.43 | 2.29 |
624 | 652 | 2.612604 | GCCAGTTCACGTTTGGTTTTT | 58.387 | 42.857 | 6.92 | 0.00 | 34.43 | 1.94 |
625 | 653 | 1.468395 | CGCCAGTTCACGTTTGGTTTT | 60.468 | 47.619 | 6.92 | 0.00 | 34.43 | 2.43 |
626 | 654 | 0.099791 | CGCCAGTTCACGTTTGGTTT | 59.900 | 50.000 | 6.92 | 0.00 | 34.43 | 3.27 |
627 | 655 | 1.725066 | CGCCAGTTCACGTTTGGTT | 59.275 | 52.632 | 6.92 | 0.00 | 34.43 | 3.67 |
628 | 656 | 2.830285 | GCGCCAGTTCACGTTTGGT | 61.830 | 57.895 | 0.00 | 0.00 | 34.43 | 3.67 |
629 | 657 | 2.051345 | GCGCCAGTTCACGTTTGG | 60.051 | 61.111 | 0.00 | 0.00 | 35.06 | 3.28 |
630 | 658 | 0.524392 | TTTGCGCCAGTTCACGTTTG | 60.524 | 50.000 | 4.18 | 0.00 | 0.00 | 2.93 |
631 | 659 | 0.171455 | TTTTGCGCCAGTTCACGTTT | 59.829 | 45.000 | 4.18 | 0.00 | 0.00 | 3.60 |
632 | 660 | 0.171455 | TTTTTGCGCCAGTTCACGTT | 59.829 | 45.000 | 4.18 | 0.00 | 0.00 | 3.99 |
633 | 661 | 1.803943 | TTTTTGCGCCAGTTCACGT | 59.196 | 47.368 | 4.18 | 0.00 | 0.00 | 4.49 |
634 | 662 | 4.700037 | TTTTTGCGCCAGTTCACG | 57.300 | 50.000 | 4.18 | 0.00 | 0.00 | 4.35 |
649 | 677 | 1.227118 | CGTGCCGTTTGCCCTTTTT | 60.227 | 52.632 | 0.00 | 0.00 | 40.16 | 1.94 |
650 | 678 | 2.415426 | CGTGCCGTTTGCCCTTTT | 59.585 | 55.556 | 0.00 | 0.00 | 40.16 | 2.27 |
651 | 679 | 4.279043 | GCGTGCCGTTTGCCCTTT | 62.279 | 61.111 | 0.00 | 0.00 | 40.16 | 3.11 |
675 | 703 | 2.658422 | CTGCATGCCCCGCTTTTT | 59.342 | 55.556 | 16.68 | 0.00 | 0.00 | 1.94 |
676 | 704 | 3.384532 | CCTGCATGCCCCGCTTTT | 61.385 | 61.111 | 16.68 | 0.00 | 0.00 | 2.27 |
685 | 713 | 2.146073 | AAAACTCCACGCCTGCATGC | 62.146 | 55.000 | 11.82 | 11.82 | 0.00 | 4.06 |
686 | 714 | 0.387622 | CAAAACTCCACGCCTGCATG | 60.388 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
687 | 715 | 1.526575 | CCAAAACTCCACGCCTGCAT | 61.527 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
688 | 716 | 2.192861 | CCAAAACTCCACGCCTGCA | 61.193 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
689 | 717 | 1.244019 | ATCCAAAACTCCACGCCTGC | 61.244 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
690 | 718 | 0.804989 | GATCCAAAACTCCACGCCTG | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
691 | 719 | 0.693049 | AGATCCAAAACTCCACGCCT | 59.307 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
692 | 720 | 2.396590 | TAGATCCAAAACTCCACGCC | 57.603 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
693 | 721 | 4.537936 | GAATAGATCCAAAACTCCACGC | 57.462 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
706 | 734 | 5.057149 | ACGGTGTGCATTTAGGAATAGATC | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
707 | 735 | 5.036117 | ACGGTGTGCATTTAGGAATAGAT | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
708 | 736 | 4.481368 | ACGGTGTGCATTTAGGAATAGA | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
709 | 737 | 4.260212 | CGAACGGTGTGCATTTAGGAATAG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
710 | 738 | 3.619483 | CGAACGGTGTGCATTTAGGAATA | 59.381 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
711 | 739 | 2.418628 | CGAACGGTGTGCATTTAGGAAT | 59.581 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
712 | 740 | 1.801771 | CGAACGGTGTGCATTTAGGAA | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
713 | 741 | 1.270412 | ACGAACGGTGTGCATTTAGGA | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
714 | 742 | 1.127951 | GACGAACGGTGTGCATTTAGG | 59.872 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
715 | 743 | 1.795872 | TGACGAACGGTGTGCATTTAG | 59.204 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
716 | 744 | 1.867166 | TGACGAACGGTGTGCATTTA | 58.133 | 45.000 | 0.00 | 0.00 | 0.00 | 1.40 |
717 | 745 | 1.018148 | TTGACGAACGGTGTGCATTT | 58.982 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
718 | 746 | 1.234821 | ATTGACGAACGGTGTGCATT | 58.765 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
719 | 747 | 1.234821 | AATTGACGAACGGTGTGCAT | 58.765 | 45.000 | 0.00 | 0.00 | 0.00 | 3.96 |
720 | 748 | 1.527736 | GTAATTGACGAACGGTGTGCA | 59.472 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
721 | 749 | 1.136169 | GGTAATTGACGAACGGTGTGC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
722 | 750 | 2.409975 | AGGTAATTGACGAACGGTGTG | 58.590 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
723 | 751 | 2.825861 | AGGTAATTGACGAACGGTGT | 57.174 | 45.000 | 0.00 | 0.00 | 0.00 | 4.16 |
724 | 752 | 4.460505 | GAAAAGGTAATTGACGAACGGTG | 58.539 | 43.478 | 0.00 | 0.00 | 0.00 | 4.94 |
725 | 753 | 3.499537 | GGAAAAGGTAATTGACGAACGGT | 59.500 | 43.478 | 0.00 | 0.00 | 0.00 | 4.83 |
726 | 754 | 3.423907 | CGGAAAAGGTAATTGACGAACGG | 60.424 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
727 | 755 | 3.184986 | ACGGAAAAGGTAATTGACGAACG | 59.815 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
845 | 882 | 5.239963 | CAGGGCTTCTTTGATTTGCATTTTT | 59.760 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
863 | 900 | 0.179004 | ATCTCGTCGATCTCAGGGCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1127 | 1167 | 1.736586 | CTAGGGTAGTGAGCAGGCG | 59.263 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
1134 | 1174 | 4.961637 | TACGCGCTAGGGTAGTGA | 57.038 | 55.556 | 5.73 | 3.13 | 43.60 | 3.41 |
1154 | 1194 | 1.134907 | TCTAGGTTTTCCGCATCCGAC | 60.135 | 52.381 | 0.00 | 0.00 | 46.35 | 4.79 |
1303 | 1350 | 1.215647 | GAGCGAAGGCGAGAAAGGA | 59.784 | 57.895 | 0.00 | 0.00 | 46.35 | 3.36 |
1321 | 1368 | 5.105228 | AGGATTATTGACACAAGCAAATGGG | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1333 | 1380 | 4.583489 | GTCTCCGGTAGAGGATTATTGACA | 59.417 | 45.833 | 0.00 | 0.00 | 43.44 | 3.58 |
1334 | 1381 | 4.022155 | GGTCTCCGGTAGAGGATTATTGAC | 60.022 | 50.000 | 0.00 | 0.00 | 43.44 | 3.18 |
1335 | 1382 | 4.150359 | GGTCTCCGGTAGAGGATTATTGA | 58.850 | 47.826 | 0.00 | 0.00 | 43.44 | 2.57 |
1353 | 1400 | 2.025155 | CACTAGCCATCAGTACGGTCT | 58.975 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1357 | 1404 | 2.586258 | AAGCACTAGCCATCAGTACG | 57.414 | 50.000 | 0.00 | 0.00 | 43.56 | 3.67 |
1488 | 1547 | 3.242518 | TCACATTGCTCGTAGTCTTTCG | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
1489 | 1548 | 4.686554 | ACTTCACATTGCTCGTAGTCTTTC | 59.313 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
1490 | 1549 | 4.632153 | ACTTCACATTGCTCGTAGTCTTT | 58.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1491 | 1550 | 4.258702 | ACTTCACATTGCTCGTAGTCTT | 57.741 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
1492 | 1551 | 3.944055 | ACTTCACATTGCTCGTAGTCT | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
1493 | 1552 | 4.992381 | AAACTTCACATTGCTCGTAGTC | 57.008 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
1494 | 1553 | 6.620733 | GCATTAAACTTCACATTGCTCGTAGT | 60.621 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1495 | 1554 | 5.734498 | GCATTAAACTTCACATTGCTCGTAG | 59.266 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1496 | 1555 | 5.391523 | GGCATTAAACTTCACATTGCTCGTA | 60.392 | 40.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1497 | 1556 | 4.475944 | GCATTAAACTTCACATTGCTCGT | 58.524 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
1498 | 1557 | 3.853671 | GGCATTAAACTTCACATTGCTCG | 59.146 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
1499 | 1558 | 4.176271 | GGGCATTAAACTTCACATTGCTC | 58.824 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
1514 | 1573 | 4.961730 | ACTGCATCCTTTTAATGGGCATTA | 59.038 | 37.500 | 0.00 | 0.00 | 32.50 | 1.90 |
1515 | 1574 | 3.776417 | ACTGCATCCTTTTAATGGGCATT | 59.224 | 39.130 | 0.00 | 0.00 | 34.93 | 3.56 |
1516 | 1575 | 3.377573 | ACTGCATCCTTTTAATGGGCAT | 58.622 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
1524 | 1594 | 5.178797 | GCTCTAACTGACTGCATCCTTTTA | 58.821 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
1629 | 1706 | 5.585047 | CAGGTAAGCCCAACTGTAGATTAAC | 59.415 | 44.000 | 0.00 | 0.00 | 34.66 | 2.01 |
1630 | 1707 | 5.249852 | ACAGGTAAGCCCAACTGTAGATTAA | 59.750 | 40.000 | 4.09 | 0.00 | 41.95 | 1.40 |
1632 | 1709 | 3.587506 | ACAGGTAAGCCCAACTGTAGATT | 59.412 | 43.478 | 4.09 | 0.00 | 41.95 | 2.40 |
1633 | 1710 | 3.182152 | ACAGGTAAGCCCAACTGTAGAT | 58.818 | 45.455 | 4.09 | 0.00 | 41.95 | 1.98 |
1635 | 1712 | 3.369157 | GGTACAGGTAAGCCCAACTGTAG | 60.369 | 52.174 | 12.15 | 0.00 | 44.36 | 2.74 |
1679 | 1766 | 3.891049 | GTTCAGGCCAGAACAAGGATAT | 58.109 | 45.455 | 30.10 | 0.00 | 45.53 | 1.63 |
1711 | 1798 | 6.697019 | CCAACAAGACCAAAAGATGTTTACAG | 59.303 | 38.462 | 0.00 | 0.00 | 32.25 | 2.74 |
1718 | 1805 | 4.916983 | TGTCCAACAAGACCAAAAGATG | 57.083 | 40.909 | 0.00 | 0.00 | 35.83 | 2.90 |
1719 | 1806 | 4.099419 | GGTTGTCCAACAAGACCAAAAGAT | 59.901 | 41.667 | 11.89 | 0.00 | 39.00 | 2.40 |
1720 | 1807 | 3.445805 | GGTTGTCCAACAAGACCAAAAGA | 59.554 | 43.478 | 11.89 | 0.00 | 39.00 | 2.52 |
1721 | 1808 | 3.447229 | AGGTTGTCCAACAAGACCAAAAG | 59.553 | 43.478 | 11.89 | 0.00 | 39.00 | 2.27 |
1773 | 1861 | 3.511540 | GCTTTAGCCCTTTCAATGGAGTT | 59.488 | 43.478 | 0.00 | 0.00 | 34.31 | 3.01 |
1778 | 1866 | 3.940209 | TGTGCTTTAGCCCTTTCAATG | 57.060 | 42.857 | 0.00 | 0.00 | 41.18 | 2.82 |
1779 | 1867 | 4.151883 | TCTTGTGCTTTAGCCCTTTCAAT | 58.848 | 39.130 | 0.00 | 0.00 | 41.18 | 2.57 |
1786 | 1874 | 3.381590 | CCCTAAATCTTGTGCTTTAGCCC | 59.618 | 47.826 | 0.00 | 0.00 | 41.18 | 5.19 |
1794 | 1882 | 9.923143 | AAAATAACTAAACCCTAAATCTTGTGC | 57.077 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
1839 | 1942 | 6.373759 | GGGGTCCTGGATAGAACAATAAAAT | 58.626 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1844 | 1947 | 2.136026 | GGGGGTCCTGGATAGAACAAT | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
1883 | 1986 | 5.914085 | ATTTGTCAAGAAACTCTGTCTCG | 57.086 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
1969 | 2073 | 5.341617 | GCCAACGATATGTACCTATAGCTC | 58.658 | 45.833 | 0.00 | 0.00 | 0.00 | 4.09 |
1971 | 2075 | 4.103357 | CGCCAACGATATGTACCTATAGC | 58.897 | 47.826 | 0.00 | 0.00 | 43.93 | 2.97 |
1986 | 2090 | 0.449786 | TGCCATACAAATCGCCAACG | 59.550 | 50.000 | 0.00 | 0.00 | 42.01 | 4.10 |
1992 | 2096 | 0.937304 | CGGGAGTGCCATACAAATCG | 59.063 | 55.000 | 0.08 | 0.00 | 35.15 | 3.34 |
1993 | 2097 | 1.134220 | TCCGGGAGTGCCATACAAATC | 60.134 | 52.381 | 0.00 | 0.00 | 35.15 | 2.17 |
2044 | 2148 | 0.252103 | AACCCTCGAGAACCCTAGCA | 60.252 | 55.000 | 15.71 | 0.00 | 0.00 | 3.49 |
2045 | 2149 | 0.903236 | AAACCCTCGAGAACCCTAGC | 59.097 | 55.000 | 15.71 | 0.00 | 0.00 | 3.42 |
2046 | 2150 | 1.481363 | GGAAACCCTCGAGAACCCTAG | 59.519 | 57.143 | 15.71 | 0.00 | 0.00 | 3.02 |
2068 | 2172 | 6.823689 | TCTCTTTCTTCCCTATACACATTTGC | 59.176 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
2069 | 2173 | 7.824289 | TGTCTCTTTCTTCCCTATACACATTTG | 59.176 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2159 | 2263 | 7.982919 | GTGATTAATGTACCCGCACCATATATA | 59.017 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
2242 | 2346 | 3.222173 | TCAGCAAAGCTTCTGGGTTAA | 57.778 | 42.857 | 13.54 | 0.00 | 36.40 | 2.01 |
2280 | 2461 | 1.523758 | GTGTGCTGTCCCCTTTAGTG | 58.476 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2400 | 2581 | 1.882912 | CCAAGGGCAAAAAGGCTTTC | 58.117 | 50.000 | 13.76 | 0.46 | 40.21 | 2.62 |
2425 | 2606 | 4.472470 | ACCTAACAATCCCTAAGGTGGTAC | 59.528 | 45.833 | 0.00 | 0.00 | 39.10 | 3.34 |
2468 | 2649 | 4.962155 | CCTTGTAGGTACTGATTCCATCC | 58.038 | 47.826 | 0.00 | 0.00 | 41.52 | 3.51 |
2486 | 2667 | 1.133482 | AGGGGGTCAACTGAAACCTTG | 60.133 | 52.381 | 0.00 | 0.00 | 35.78 | 3.61 |
2487 | 2668 | 1.145119 | GAGGGGGTCAACTGAAACCTT | 59.855 | 52.381 | 0.00 | 0.00 | 35.78 | 3.50 |
2488 | 2669 | 0.771755 | GAGGGGGTCAACTGAAACCT | 59.228 | 55.000 | 0.00 | 0.00 | 35.78 | 3.50 |
2531 | 2734 | 2.031157 | GCTGTATGTTGGTCGTTGCTTT | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2557 | 2760 | 0.107606 | TGGTGTTGGCGTGTTGTACT | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2587 | 2790 | 1.208052 | GCACCTCTGTATCTTGCCTCA | 59.792 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2624 | 2827 | 1.072266 | ACTTGGAGTTGTATGGGGCA | 58.928 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2661 | 2864 | 4.098044 | CCTTCGACTTCATAGTGAGGCTTA | 59.902 | 45.833 | 0.00 | 0.00 | 33.84 | 3.09 |
2674 | 2877 | 2.230266 | AGTTGAGAGCTCCTTCGACTTC | 59.770 | 50.000 | 16.55 | 4.60 | 0.00 | 3.01 |
2690 | 2893 | 0.181114 | AGTGGCTTGCTCACAGTTGA | 59.819 | 50.000 | 13.60 | 0.00 | 37.58 | 3.18 |
2709 | 2912 | 3.439476 | GTGTGTAGCTTCGTCTCTTCCTA | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 2.94 |
2710 | 2913 | 2.229302 | GTGTGTAGCTTCGTCTCTTCCT | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2711 | 2914 | 2.229302 | AGTGTGTAGCTTCGTCTCTTCC | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2726 | 2929 | 0.318441 | CTCATGGGTCGTCAGTGTGT | 59.682 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2783 | 2986 | 7.275560 | CGAACAAATTTTGAATGGGAGGATTAC | 59.724 | 37.037 | 15.81 | 0.00 | 0.00 | 1.89 |
2867 | 3070 | 4.229876 | GGTGTCACTTTCAAATTGCTAGC | 58.770 | 43.478 | 8.10 | 8.10 | 0.00 | 3.42 |
2880 | 3083 | 3.576078 | TGATTTGGACTGGTGTCACTT | 57.424 | 42.857 | 2.35 | 0.00 | 44.61 | 3.16 |
2893 | 3096 | 3.439825 | TCAACGTGTCATGGATGATTTGG | 59.560 | 43.478 | 0.00 | 0.00 | 39.30 | 3.28 |
2907 | 3110 | 1.046472 | TCCTGGAGGTGTCAACGTGT | 61.046 | 55.000 | 0.00 | 0.00 | 36.34 | 4.49 |
2911 | 3114 | 2.930826 | TCTTTCCTGGAGGTGTCAAC | 57.069 | 50.000 | 0.00 | 0.00 | 36.34 | 3.18 |
2937 | 3140 | 9.146984 | CTTGTATCAACGTGAAGGTTATTCTTA | 57.853 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2968 | 3171 | 9.905713 | ATTATGTGTATGGAGTTGTGTAGAATT | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2972 | 3175 | 8.397906 | CCAAATTATGTGTATGGAGTTGTGTAG | 58.602 | 37.037 | 0.00 | 0.00 | 32.82 | 2.74 |
3012 | 3215 | 7.147707 | GCTAGATTCCCTTCTCTGGTTAACTTA | 60.148 | 40.741 | 5.42 | 0.00 | 0.00 | 2.24 |
3062 | 3265 | 6.073981 | AGCTCAATAGATGTGGACAGAGATA | 58.926 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3079 | 3282 | 7.651027 | AATCTGGCACTAAAATTAGCTCAAT | 57.349 | 32.000 | 0.00 | 0.00 | 34.09 | 2.57 |
3080 | 3283 | 7.067008 | GGTAATCTGGCACTAAAATTAGCTCAA | 59.933 | 37.037 | 0.00 | 0.00 | 34.09 | 3.02 |
3081 | 3284 | 6.542370 | GGTAATCTGGCACTAAAATTAGCTCA | 59.458 | 38.462 | 0.00 | 0.00 | 34.09 | 4.26 |
3082 | 3285 | 6.292919 | CGGTAATCTGGCACTAAAATTAGCTC | 60.293 | 42.308 | 0.00 | 0.00 | 34.09 | 4.09 |
3083 | 3286 | 5.527582 | CGGTAATCTGGCACTAAAATTAGCT | 59.472 | 40.000 | 0.00 | 0.00 | 34.09 | 3.32 |
3084 | 3287 | 5.296035 | ACGGTAATCTGGCACTAAAATTAGC | 59.704 | 40.000 | 0.13 | 0.00 | 34.09 | 3.09 |
3085 | 3288 | 6.920569 | ACGGTAATCTGGCACTAAAATTAG | 57.079 | 37.500 | 0.00 | 0.00 | 36.82 | 1.73 |
3086 | 3289 | 6.655848 | ACAACGGTAATCTGGCACTAAAATTA | 59.344 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3102 | 3305 | 4.640789 | AAAAATGTCAGCACAACGGTAA | 57.359 | 36.364 | 0.00 | 0.00 | 35.64 | 2.85 |
3130 | 3333 | 9.554395 | TGTTGAACATAATTCAGTAGTTTCTCA | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
3155 | 3358 | 3.979495 | GCTTTTCATCTTGCTGACACTTG | 59.021 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3165 | 3368 | 8.158169 | TGGCTATATAGTTGCTTTTCATCTTG | 57.842 | 34.615 | 11.38 | 0.00 | 0.00 | 3.02 |
3205 | 3408 | 3.850098 | AAACCCTGGCACCTCTGCG | 62.850 | 63.158 | 0.00 | 0.00 | 45.31 | 5.18 |
3218 | 3421 | 6.439675 | TGTTGTACAAGTTAACTCAAACCC | 57.560 | 37.500 | 8.98 | 0.00 | 0.00 | 4.11 |
3239 | 3442 | 5.241949 | TGGTTGTACAAACTGTTTCACTTGT | 59.758 | 36.000 | 23.51 | 1.51 | 36.11 | 3.16 |
3243 | 3446 | 7.117092 | ACAAAATGGTTGTACAAACTGTTTCAC | 59.883 | 33.333 | 23.51 | 5.34 | 0.00 | 3.18 |
3244 | 3447 | 7.155328 | ACAAAATGGTTGTACAAACTGTTTCA | 58.845 | 30.769 | 23.51 | 3.38 | 0.00 | 2.69 |
3245 | 3448 | 7.329717 | TGACAAAATGGTTGTACAAACTGTTTC | 59.670 | 33.333 | 23.51 | 12.73 | 31.96 | 2.78 |
3246 | 3449 | 7.117092 | GTGACAAAATGGTTGTACAAACTGTTT | 59.883 | 33.333 | 23.51 | 19.55 | 31.96 | 2.83 |
3260 | 3463 | 2.091333 | AGGTCTTGGGTGACAAAATGGT | 60.091 | 45.455 | 0.00 | 0.00 | 38.91 | 3.55 |
3272 | 3475 | 3.144506 | CATGCATAGCTAAGGTCTTGGG | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3278 | 3481 | 2.441001 | AGGAAGCATGCATAGCTAAGGT | 59.559 | 45.455 | 21.98 | 7.96 | 42.53 | 3.50 |
3287 | 3490 | 1.760613 | CCATTGGAAGGAAGCATGCAT | 59.239 | 47.619 | 21.98 | 8.13 | 0.00 | 3.96 |
3289 | 3492 | 1.188863 | ACCATTGGAAGGAAGCATGC | 58.811 | 50.000 | 10.51 | 10.51 | 0.00 | 4.06 |
3290 | 3493 | 4.019174 | ACTTACCATTGGAAGGAAGCATG | 58.981 | 43.478 | 10.37 | 0.00 | 0.00 | 4.06 |
3331 | 3538 | 6.379386 | GGAACACTCCTTACTAAAAATGTGC | 58.621 | 40.000 | 0.00 | 0.00 | 38.88 | 4.57 |
3388 | 3595 | 7.338449 | CCTTAAGATTTTCTTATCCCGGTTTCA | 59.662 | 37.037 | 3.36 | 0.00 | 38.60 | 2.69 |
3389 | 3596 | 7.338703 | ACCTTAAGATTTTCTTATCCCGGTTTC | 59.661 | 37.037 | 3.36 | 0.00 | 38.60 | 2.78 |
3433 | 3640 | 4.219507 | TGTCTACTTTCTCTGCCTTGAGAG | 59.780 | 45.833 | 0.00 | 0.00 | 43.05 | 3.20 |
3463 | 3670 | 0.328258 | ACAGCAAGGGTATGGTCACC | 59.672 | 55.000 | 0.00 | 0.00 | 37.91 | 4.02 |
3480 | 3687 | 5.127682 | TGCTGAGAAGCTACATATGAGAACA | 59.872 | 40.000 | 10.38 | 0.00 | 35.49 | 3.18 |
3527 | 3734 | 8.000780 | AGCTGAAAGTCTTTGACAAACTTAAT | 57.999 | 30.769 | 1.60 | 0.00 | 34.60 | 1.40 |
3657 | 3875 | 6.489603 | ACATGGTCATGAAAAGGTACCATAA | 58.510 | 36.000 | 15.94 | 0.00 | 46.60 | 1.90 |
3739 | 3957 | 4.301072 | TGGCAGTATAATATGGAAGCCC | 57.699 | 45.455 | 0.00 | 0.00 | 40.08 | 5.19 |
3768 | 4990 | 5.656416 | TGGTTGGATTTATTTAGGCTTCTGG | 59.344 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3794 | 5016 | 4.582240 | GCCTAATCCCTTTTCCTCATTGAG | 59.418 | 45.833 | 6.70 | 6.70 | 0.00 | 3.02 |
3904 | 5345 | 4.586841 | TGTTAAATTGGAACTGAAGGTGGG | 59.413 | 41.667 | 5.39 | 0.00 | 0.00 | 4.61 |
3960 | 5402 | 8.512138 | CGTCACAAGAAGAAAAGGGTAAATAAT | 58.488 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3965 | 5944 | 5.026038 | TCGTCACAAGAAGAAAAGGGTAA | 57.974 | 39.130 | 0.00 | 0.00 | 29.12 | 2.85 |
4086 | 6076 | 6.596888 | TGCTGAAATTGTCTCTCTAATCAAGG | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
4089 | 6079 | 7.333323 | TCATGCTGAAATTGTCTCTCTAATCA | 58.667 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4177 | 6800 | 2.158769 | ACAGCACTGGAACACTTCATGA | 60.159 | 45.455 | 2.21 | 0.00 | 34.19 | 3.07 |
4234 | 6857 | 1.204786 | TGTCCATCCCGGTCATGGTT | 61.205 | 55.000 | 22.98 | 0.00 | 41.59 | 3.67 |
4254 | 6877 | 1.609208 | CCTCTATTCCCCCGCAATTG | 58.391 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4255 | 6878 | 0.178990 | GCCTCTATTCCCCCGCAATT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4260 | 6883 | 0.838122 | ATCCAGCCTCTATTCCCCCG | 60.838 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
4278 | 6901 | 2.831607 | AATCCCTCTCAGGATCCCAT | 57.168 | 50.000 | 8.55 | 0.00 | 46.31 | 4.00 |
4398 | 7021 | 1.069358 | CTCTTAGGGCCTGTTCGGATC | 59.931 | 57.143 | 18.53 | 0.00 | 33.16 | 3.36 |
4433 | 7057 | 0.734889 | GGATCCAGCCACACAATTCG | 59.265 | 55.000 | 6.95 | 0.00 | 0.00 | 3.34 |
4486 | 7110 | 3.879295 | TGCAAAGATATAGACAAGCCTGC | 59.121 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
4562 | 7188 | 3.699411 | AAGCAGCATTATGCCCAAAAA | 57.301 | 38.095 | 14.10 | 0.00 | 46.52 | 1.94 |
4567 | 7193 | 1.202452 | GGTCAAAGCAGCATTATGCCC | 60.202 | 52.381 | 14.10 | 5.48 | 46.52 | 5.36 |
4622 | 7249 | 4.335594 | GCAACTAGTTGTGGACTCTTGTTT | 59.664 | 41.667 | 30.90 | 0.00 | 42.31 | 2.83 |
4718 | 7345 | 7.985589 | TCAGAAGGGGGAAATATATAAAGGTC | 58.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
4742 | 7369 | 2.094854 | CAGGAGCAGTGCCTTTTCATTC | 60.095 | 50.000 | 12.58 | 0.00 | 32.12 | 2.67 |
4922 | 7549 | 4.456911 | GTGAAAGGAATGCAGATTGACAGA | 59.543 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4924 | 7551 | 3.507233 | GGTGAAAGGAATGCAGATTGACA | 59.493 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
5131 | 7759 | 6.268617 | CCTGGTCACTAGAGAATGGATAATGA | 59.731 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
5179 | 7807 | 4.310769 | GTGTTTGCTCTCTGATGTAGTGT | 58.689 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
5182 | 7810 | 4.199432 | AGGTGTTTGCTCTCTGATGTAG | 57.801 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
5183 | 7811 | 5.337571 | CCTTAGGTGTTTGCTCTCTGATGTA | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5184 | 7812 | 4.564406 | CCTTAGGTGTTTGCTCTCTGATGT | 60.564 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
5185 | 7813 | 3.937706 | CCTTAGGTGTTTGCTCTCTGATG | 59.062 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
5186 | 7814 | 3.620966 | GCCTTAGGTGTTTGCTCTCTGAT | 60.621 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
5187 | 7815 | 2.289694 | GCCTTAGGTGTTTGCTCTCTGA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5188 | 7816 | 2.079925 | GCCTTAGGTGTTTGCTCTCTG | 58.920 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
5189 | 7817 | 1.699634 | TGCCTTAGGTGTTTGCTCTCT | 59.300 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
5190 | 7818 | 1.807142 | GTGCCTTAGGTGTTTGCTCTC | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
5191 | 7819 | 1.142870 | TGTGCCTTAGGTGTTTGCTCT | 59.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
5192 | 7820 | 1.604604 | TGTGCCTTAGGTGTTTGCTC | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5193 | 7821 | 2.162681 | GATGTGCCTTAGGTGTTTGCT | 58.837 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
5194 | 7822 | 1.202348 | GGATGTGCCTTAGGTGTTTGC | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
5206 | 7834 | 7.445945 | ACTTCTGTCTTAATATAGGATGTGCC | 58.554 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
5207 | 7835 | 9.413048 | GTACTTCTGTCTTAATATAGGATGTGC | 57.587 | 37.037 | 0.00 | 0.00 | 0.00 | 4.57 |
5406 | 8069 | 8.244113 | CCAAAGAAGGTGAATACTAAATTGGTC | 58.756 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
5510 | 8225 | 7.043565 | TCGTACCCAAGGTAAATAATGAAGTC | 58.956 | 38.462 | 0.00 | 0.00 | 40.12 | 3.01 |
5562 | 8277 | 4.592942 | TCTTGAGGAAAATAGCAGCACAT | 58.407 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
5668 | 8383 | 4.523943 | AGCCATTTTACTGCAGACAATTCA | 59.476 | 37.500 | 23.35 | 0.00 | 0.00 | 2.57 |
5734 | 8449 | 6.396829 | AATATCAAATAGCCAAAGACCAGC | 57.603 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
5855 | 8570 | 4.699735 | TGACTGCACCATCGTAAATTGAAT | 59.300 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
6018 | 8733 | 3.139077 | CACACAACTTGTTACTCCCTCC | 58.861 | 50.000 | 0.00 | 0.00 | 35.67 | 4.30 |
6044 | 8759 | 6.818142 | ACATTTGCAGTATTGAAAATAAGGGC | 59.182 | 34.615 | 3.98 | 0.00 | 39.99 | 5.19 |
6134 | 8856 | 4.072131 | GACGGACAATAATGCACCCATAT | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
6147 | 8869 | 3.804325 | CGAATGAATGCTAGACGGACAAT | 59.196 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
6210 | 8936 | 3.384168 | AGCTAGATACCCACATGACCAA | 58.616 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
6266 | 8992 | 3.713248 | AGCATAGAATCAGGTGTGGATGA | 59.287 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
6267 | 8993 | 4.082665 | AGCATAGAATCAGGTGTGGATG | 57.917 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6268 | 8994 | 4.785346 | AAGCATAGAATCAGGTGTGGAT | 57.215 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
6303 | 9030 | 5.820131 | TGAAACAACTGCTGAACATTACAG | 58.180 | 37.500 | 0.00 | 0.00 | 38.27 | 2.74 |
6362 | 9089 | 3.181493 | CCTAATTGTAGCAAGCAAGCCTG | 60.181 | 47.826 | 0.00 | 0.00 | 34.23 | 4.85 |
6458 | 9185 | 5.335661 | CCTCCTAAAGGGAAAAACACATTCG | 60.336 | 44.000 | 0.00 | 0.00 | 44.58 | 3.34 |
6484 | 9211 | 1.320344 | TAGTGGACTGGGCAGCTACG | 61.320 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6602 | 9329 | 5.551305 | ACTGGCTACATGTGCAATATCTA | 57.449 | 39.130 | 9.11 | 0.00 | 0.00 | 1.98 |
6643 | 9370 | 3.216800 | GTTTGCCTCTGCCATCATGATA | 58.783 | 45.455 | 8.15 | 0.00 | 36.33 | 2.15 |
6664 | 9391 | 7.232945 | ACAATTTGGTTGAAGAAATGTTTCG | 57.767 | 32.000 | 0.78 | 0.00 | 39.89 | 3.46 |
6668 | 9395 | 6.282930 | CAGGACAATTTGGTTGAAGAAATGT | 58.717 | 36.000 | 0.78 | 0.00 | 40.37 | 2.71 |
6708 | 9435 | 9.475620 | TCCTGAAGAAGAGCGGATATATATAAA | 57.524 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6709 | 9436 | 9.475620 | TTCCTGAAGAAGAGCGGATATATATAA | 57.524 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
6754 | 9481 | 3.080121 | AGGCTGGCTCCTCTTCGG | 61.080 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
6786 | 9513 | 3.998341 | GTGGCTTCACGGAAACTGTAATA | 59.002 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
6832 | 9559 | 0.393808 | GGAGCGGGCTTACATTCCAA | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6951 | 9684 | 0.652592 | CATCGCCACTTTCATCGTCC | 59.347 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6974 | 9707 | 6.969043 | TCTTGGATATTACTGTTGGGTCATT | 58.031 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7087 | 9821 | 2.766828 | TGCAATGGAATCATGGATGCAA | 59.233 | 40.909 | 0.00 | 0.00 | 39.95 | 4.08 |
7103 | 9837 | 5.181690 | ACAAAACGTTCATACACTGCAAT | 57.818 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
7130 | 9864 | 6.591834 | CCTTTTGTCAGATAGAACTCATCGTT | 59.408 | 38.462 | 0.00 | 0.00 | 38.91 | 3.85 |
7131 | 9865 | 6.071334 | TCCTTTTGTCAGATAGAACTCATCGT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 3.73 |
7197 | 9931 | 8.432013 | TGACTCTGATTGCATAGTACCATAATT | 58.568 | 33.333 | 0.00 | 0.00 | 32.29 | 1.40 |
7218 | 9954 | 5.755861 | GCCTTTGATAGGTGAATACTGACTC | 59.244 | 44.000 | 0.00 | 0.00 | 46.61 | 3.36 |
7221 | 9957 | 4.473196 | TGGCCTTTGATAGGTGAATACTGA | 59.527 | 41.667 | 3.32 | 0.00 | 46.61 | 3.41 |
7250 | 9986 | 5.925506 | TTTTGTGCAATGATCAGATGGAT | 57.074 | 34.783 | 0.09 | 0.00 | 39.53 | 3.41 |
7251 | 9987 | 5.725325 | TTTTTGTGCAATGATCAGATGGA | 57.275 | 34.783 | 0.09 | 1.20 | 0.00 | 3.41 |
7252 | 9988 | 6.103330 | TGATTTTTGTGCAATGATCAGATGG | 58.897 | 36.000 | 0.09 | 0.00 | 0.00 | 3.51 |
7253 | 9989 | 7.009265 | GTCTGATTTTTGTGCAATGATCAGATG | 59.991 | 37.037 | 25.62 | 4.20 | 43.20 | 2.90 |
7329 | 10069 | 3.838244 | AATAGCCAGGAAATAGCGTGA | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
7608 | 10351 | 5.170021 | CCGATGAAAGGCAATGAAAATCAA | 58.830 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
7649 | 10392 | 5.918426 | AACCCGTGAAAACCTAAGAAAAA | 57.082 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
7650 | 10393 | 5.918426 | AAACCCGTGAAAACCTAAGAAAA | 57.082 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
7677 | 10420 | 3.680777 | AGGAAAAGGGGTGAAAAGACA | 57.319 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
7752 | 10498 | 8.600625 | GCTCGACATGTATAAAAGAATGTTACA | 58.399 | 33.333 | 0.00 | 0.00 | 33.51 | 2.41 |
7880 | 10626 | 7.439381 | TCAAAAACATATACTCCGTCCTATCC | 58.561 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.