AutoCloner

Multiple sequence alignment - TraesCS3A01G114300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G114300	chr3A	100.000	3501	0	0	1	3501	81697744	81694244	0.000000e+00	6466
1	TraesCS3A01G114300	chr3A	94.000	600	21	1	1	585	108622176	108621577	0.000000e+00	894
2	TraesCS3A01G114300	chr3D	94.208	1036	51	5	1473	2506	70246270	70245242	0.000000e+00	1572
3	TraesCS3A01G114300	chr3D	92.522	1003	46	7	2502	3501	70245029	70244053	0.000000e+00	1410
4	TraesCS3A01G114300	chr3D	92.848	797	33	10	685	1469	70247098	70246314	0.000000e+00	1134
5	TraesCS3A01G114300	chr3D	88.489	278	30	2	638	915	70274363	70274088	5.600000e-88	335
6	TraesCS3A01G114300	chr3B	93.750	1056	41	14	1462	2506	116112278	116111237	0.000000e+00	1561
7	TraesCS3A01G114300	chr3B	94.406	1001	49	5	2505	3501	116111021	116110024	0.000000e+00	1531
8	TraesCS3A01G114300	chr3B	93.293	835	43	9	638	1460	116113157	116112324	0.000000e+00	1219
9	TraesCS3A01G114300	chr6A	96.752	585	17	1	1	585	270701452	270702034	0.000000e+00	974
10	TraesCS3A01G114300	chr7B	93.924	576	28	5	16	585	24412601	24413175	0.000000e+00	863
11	TraesCS3A01G114300	chr7B	93.403	576	32	4	16	585	748024446	748023871	0.000000e+00	848
12	TraesCS3A01G114300	chr2B	93.913	575	30	3	16	585	451633201	451633775	0.000000e+00	863
13	TraesCS3A01G114300	chr2B	91.478	575	44	3	16	585	644375283	644375857	0.000000e+00	785
14	TraesCS3A01G114300	chr2B	94.225	329	14	3	262	585	5069053	5069381	6.750000e-137	497
15	TraesCS3A01G114300	chr7D	91.400	593	43	6	1	585	277707386	277707978	0.000000e+00	806
16	TraesCS3A01G114300	chr5B	93.494	538	30	3	16	548	473662190	473662727	0.000000e+00	795
17	TraesCS3A01G114300	chr5B	92.547	322	20	2	10	327	144490804	144490483	3.180000e-125	459
18	TraesCS3A01G114300	chr1B	77.385	650	117	23	1575	2214	677914541	677913912	3.320000e-95	359
19	TraesCS3A01G114300	chr1A	77.167	600	113	18	1281	1864	584374761	584374170	9.370000e-86	327

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G114300	chr3A	81694244	81697744	3500	True	6466	6466	100.000000	1	3501	1	chr3A.!!$R1	3500
1	TraesCS3A01G114300	chr3A	108621577	108622176	599	True	894	894	94.000000	1	585	1	chr3A.!!$R2	584
2	TraesCS3A01G114300	chr3D	70244053	70247098	3045	True	1372	1572	93.192667	685	3501	3	chr3D.!!$R2	2816
3	TraesCS3A01G114300	chr3B	116110024	116113157	3133	True	1437	1561	93.816333	638	3501	3	chr3B.!!$R1	2863
4	TraesCS3A01G114300	chr6A	270701452	270702034	582	False	974	974	96.752000	1	585	1	chr6A.!!$F1	584
5	TraesCS3A01G114300	chr7B	24412601	24413175	574	False	863	863	93.924000	16	585	1	chr7B.!!$F1	569
6	TraesCS3A01G114300	chr7B	748023871	748024446	575	True	848	848	93.403000	16	585	1	chr7B.!!$R1	569
7	TraesCS3A01G114300	chr2B	451633201	451633775	574	False	863	863	93.913000	16	585	1	chr2B.!!$F2	569
8	TraesCS3A01G114300	chr2B	644375283	644375857	574	False	785	785	91.478000	16	585	1	chr2B.!!$F3	569
9	TraesCS3A01G114300	chr7D	277707386	277707978	592	False	806	806	91.400000	1	585	1	chr7D.!!$F1	584
10	TraesCS3A01G114300	chr5B	473662190	473662727	537	False	795	795	93.494000	16	548	1	chr5B.!!$F1	532
11	TraesCS3A01G114300	chr1B	677913912	677914541	629	True	359	359	77.385000	1575	2214	1	chr1B.!!$R1	639
12	TraesCS3A01G114300	chr1A	584374170	584374761	591	True	327	327	77.167000	1281	1864	1	chr1A.!!$R1	583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
154	157	0.249398	GTTCCTGTACCCATCACGCT	59.751	55.0	0.00	0.0	0.00	5.07	F
940	967	0.546747	ACAGGGCCTGCCACTAACTA	60.547	55.0	33.04	0.0	37.98	2.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1898	1990	1.665916	CAGTCACAGCACGGTCTGG	60.666	63.158	10.28	1.32	38.36	3.86	R
2733	3063	0.179059	TCGACACCAAGAAGCTGCAA	60.179	50.000	1.02	0.00	0.00	4.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
154	157	0.249398	GTTCCTGTACCCATCACGCT	59.751	55.000	0.00	0.00	0.00	5.07
585	611	2.297701	GCGTGACCATGGGTTGAATAT	58.702	47.619	18.09	0.00	35.25	1.28
586	612	3.472652	GCGTGACCATGGGTTGAATATA	58.527	45.455	18.09	0.00	35.25	0.86
587	613	4.072131	GCGTGACCATGGGTTGAATATAT	58.928	43.478	18.09	0.00	35.25	0.86
588	614	5.242434	GCGTGACCATGGGTTGAATATATA	58.758	41.667	18.09	0.00	35.25	0.86
589	615	5.880332	GCGTGACCATGGGTTGAATATATAT	59.120	40.000	18.09	0.00	35.25	0.86
590	616	7.045416	GCGTGACCATGGGTTGAATATATATA	58.955	38.462	18.09	0.00	35.25	0.86
591	617	7.715249	GCGTGACCATGGGTTGAATATATATAT	59.285	37.037	18.09	0.00	35.25	0.86
592	618	9.613428	CGTGACCATGGGTTGAATATATATATT	57.387	33.333	18.09	16.28	35.25	1.28
662	688	9.517609	GATCTATTTAGTGTTGTAGTTGTCGAT	57.482	33.333	0.00	0.00	0.00	3.59
666	692	6.944557	TTAGTGTTGTAGTTGTCGATGATG	57.055	37.500	0.00	0.00	0.00	3.07
667	693	3.679980	AGTGTTGTAGTTGTCGATGATGC	59.320	43.478	0.00	0.00	0.00	3.91
668	694	3.000041	TGTTGTAGTTGTCGATGATGCC	59.000	45.455	0.00	0.00	0.00	4.40
683	709	5.446473	CGATGATGCCTCTTACAAACTTGAC	60.446	44.000	0.00	0.00	0.00	3.18
695	721	5.186996	ACAAACTTGACCAAACTATGCAG	57.813	39.130	0.00	0.00	0.00	4.41
718	744	1.786937	TTGATCTCAGAGGAGGGAGC	58.213	55.000	0.00	0.00	41.69	4.70
731	757	2.678336	GGAGGGAGCAGAAAATAACACG	59.322	50.000	0.00	0.00	0.00	4.49
739	765	6.325919	AGCAGAAAATAACACGATTCCAAA	57.674	33.333	0.00	0.00	0.00	3.28
794	821	1.593196	ACATCGTGAACACAACTGGG	58.407	50.000	5.80	0.00	0.00	4.45
815	842	2.032808	GCCGAAAGACAGTCTTGACAAC	60.033	50.000	16.85	2.63	36.71	3.32
871	898	3.731547	TGAGCCACCCTCAGATGG	58.268	61.111	0.00	0.00	45.44	3.51
895	922	5.698832	CAAGAATCGTACTTTCATGCCAAA	58.301	37.500	7.80	0.00	0.00	3.28
939	966	1.842381	GACAGGGCCTGCCACTAACT	61.842	60.000	33.04	11.34	37.98	2.24
940	967	0.546747	ACAGGGCCTGCCACTAACTA	60.547	55.000	33.04	0.00	37.98	2.24
961	989	8.431910	AACTAGTGTTCTCTTGGATAAAGGTA	57.568	34.615	0.00	0.00	36.46	3.08
1027	1056	4.845447	TGGCCCCATGCAGCATCC	62.845	66.667	4.38	4.27	43.89	3.51
1078	1107	2.125147	TCAGCTTTCATCCGCGGG	60.125	61.111	27.83	10.69	0.00	6.13
1469	1507	4.392921	ACCGGTAGTGATGATCAAGAAG	57.607	45.455	4.49	0.00	0.00	2.85
1539	1630	1.135731	GCAGAGGAGAGTGACGACG	59.864	63.158	0.00	0.00	0.00	5.12
1898	1990	1.370051	GCACCCGCAACGTTTCTTC	60.370	57.895	0.00	0.00	38.36	2.87
1914	2006	0.946221	CTTCCAGACCGTGCTGTGAC	60.946	60.000	0.00	0.00	34.06	3.67
1939	2031	3.597255	TCTACTGATCTTGACGACGAGT	58.403	45.455	0.00	0.00	0.00	4.18
1940	2032	2.620779	ACTGATCTTGACGACGAGTG	57.379	50.000	0.00	0.00	0.00	3.51
1941	2033	2.152016	ACTGATCTTGACGACGAGTGA	58.848	47.619	0.00	0.00	0.00	3.41
1942	2034	2.160615	ACTGATCTTGACGACGAGTGAG	59.839	50.000	0.00	0.00	0.00	3.51
2074	2169	0.596600	GCAACGACGACCAGAAGTCA	60.597	55.000	0.00	0.00	46.69	3.41
2075	2170	1.935300	GCAACGACGACCAGAAGTCAT	60.935	52.381	0.00	0.00	46.69	3.06
2311	2406	1.595882	GCCTCAGCTCTGCTCTTCA	59.404	57.895	0.00	0.00	36.40	3.02
2391	2486	6.106673	AGTTCTTCGGAATCATGTAATTCGT	58.893	36.000	0.00	0.00	36.66	3.85
2422	2524	0.176680	ATGATGCTGTCGTCCTGTCC	59.823	55.000	0.00	0.00	0.00	4.02
2423	2525	0.900182	TGATGCTGTCGTCCTGTCCT	60.900	55.000	0.00	0.00	0.00	3.85
2424	2526	0.459237	GATGCTGTCGTCCTGTCCTG	60.459	60.000	0.00	0.00	0.00	3.86
2425	2527	1.188219	ATGCTGTCGTCCTGTCCTGT	61.188	55.000	0.00	0.00	0.00	4.00
2426	2528	1.373497	GCTGTCGTCCTGTCCTGTG	60.373	63.158	0.00	0.00	0.00	3.66
2449	2551	1.862815	GCACTGCACTTGTGAGCAAAG	60.863	52.381	8.64	0.00	39.15	2.77
2496	2598	7.208777	ACTGCAGTAGAATCAATATCACTGAG	58.791	38.462	20.16	1.91	36.37	3.35
2500	2602	9.703892	GCAGTAGAATCAATATCACTGAGTAAT	57.296	33.333	3.84	0.00	36.37	1.89
2552	2881	1.722751	GCTGAACGCATCGAACAGTTG	60.723	52.381	7.35	0.00	38.92	3.16
2569	2898	7.519809	CGAACAGTTGAGGTGTGAATTTTCATA	60.520	37.037	0.00	0.00	39.73	2.15
2570	2899	7.206981	ACAGTTGAGGTGTGAATTTTCATAG	57.793	36.000	0.00	0.00	39.73	2.23
2586	2915	3.994165	TAGGGACTACTCGGCAGTT	57.006	52.632	0.00	0.00	41.75	3.16
2628	2958	4.122776	CCTGTAATGTGCCTAGCTACTTG	58.877	47.826	0.00	0.00	0.00	3.16
2646	2976	3.274288	CTTGGGTTTATCTGTGAGGCTC	58.726	50.000	7.79	7.79	0.00	4.70
2664	2994	2.893637	CTCACGAGGGATTTCACGATT	58.106	47.619	0.00	0.00	0.00	3.34
2733	3063	4.156455	TGACTTCTCCTTCACAAAGCTT	57.844	40.909	0.00	0.00	0.00	3.74
2757	3087	1.149148	GCTTCTTGGTGTCGAAGTCC	58.851	55.000	0.00	0.00	39.01	3.85
2823	3153	7.719633	AGGAATTGCATAATCATTAGTAACGGT	59.280	33.333	0.00	0.00	0.00	4.83
2887	3217	6.439675	AAAGTTTGCATGCAAAGAAAATGT	57.560	29.167	38.93	20.36	45.16	2.71
2937	3267	6.440647	TCAGATCACTACTTTTCACCAGGTAT	59.559	38.462	0.00	0.00	0.00	2.73
2938	3268	7.618117	TCAGATCACTACTTTTCACCAGGTATA	59.382	37.037	0.00	0.00	0.00	1.47
2982	3312	5.009410	AGGAGCAATTCAACAGACTTTTGAG	59.991	40.000	4.34	0.00	34.50	3.02
2985	3315	6.963796	AGCAATTCAACAGACTTTTGAGTAG	58.036	36.000	4.34	0.89	34.50	2.57
3039	3369	4.870123	TTGCATGCATCAAACCTACTTT	57.130	36.364	23.37	0.00	0.00	2.66
3040	3370	5.973899	TTGCATGCATCAAACCTACTTTA	57.026	34.783	23.37	0.00	0.00	1.85
3047	3377	6.065374	TGCATCAAACCTACTTTAACAGGAA	58.935	36.000	4.37	0.00	35.76	3.36
3049	3379	6.016610	GCATCAAACCTACTTTAACAGGAACA	60.017	38.462	4.37	0.00	35.76	3.18
3074	3404	4.356405	TGCACCGAATTCATAGATCCAT	57.644	40.909	6.22	0.00	0.00	3.41
3077	3407	5.876460	TGCACCGAATTCATAGATCCATATG	59.124	40.000	6.22	0.00	34.96	1.78
3121	3451	5.626543	CAGAATAGTGTGTGTTGCATGAAAC	59.373	40.000	9.87	9.87	0.00	2.78
3255	3585	6.737254	TCCTTCCATTTCTTTCATTACGAC	57.263	37.500	0.00	0.00	0.00	4.34
3381	3711	3.947196	TGATGCTCACACAAGAACAAACT	59.053	39.130	0.00	0.00	0.00	2.66
3438	3771	6.849085	ACAGAATAAATTGCAACCCATACA	57.151	33.333	0.00	0.00	0.00	2.29
3439	3772	6.630071	ACAGAATAAATTGCAACCCATACAC	58.370	36.000	0.00	0.00	0.00	2.90
3454	3787	0.830648	TACACACCTCATGCCTAGCC	59.169	55.000	0.00	0.00	0.00	3.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	2.286950	CGAGGAAATGAGAGAGAGAGCG	60.287	54.545	0.00	0.00	0.00	5.03
154	157	3.427598	TTGGTGGTCGTTGACGCGA	62.428	57.895	15.93	0.00	39.60	5.87
168	171	2.521708	GGGTGCCAGCAACTTGGT	60.522	61.111	7.74	0.00	40.49	3.67
634	660	9.355215	CGACAACTACAACACTAAATAGATCTT	57.645	33.333	0.00	0.00	0.00	2.40
635	661	8.737175	TCGACAACTACAACACTAAATAGATCT	58.263	33.333	0.00	0.00	0.00	2.75
636	662	8.906636	TCGACAACTACAACACTAAATAGATC	57.093	34.615	0.00	0.00	0.00	2.75
648	674	3.262420	AGGCATCATCGACAACTACAAC	58.738	45.455	0.00	0.00	0.00	3.32
659	685	4.631377	TCAAGTTTGTAAGAGGCATCATCG	59.369	41.667	0.00	0.00	0.00	3.84
662	688	4.072131	GGTCAAGTTTGTAAGAGGCATCA	58.928	43.478	0.00	0.00	0.00	3.07
666	692	4.338400	AGTTTGGTCAAGTTTGTAAGAGGC	59.662	41.667	0.00	0.00	0.00	4.70
667	693	7.584987	CATAGTTTGGTCAAGTTTGTAAGAGG	58.415	38.462	0.00	0.00	0.00	3.69
668	694	7.078228	GCATAGTTTGGTCAAGTTTGTAAGAG	58.922	38.462	0.00	0.00	0.00	2.85
695	721	1.488393	CCCTCCTCTGAGATCAAACCC	59.512	57.143	6.17	0.00	41.42	4.11
718	744	8.574196	AGTTTTTGGAATCGTGTTATTTTCTG	57.426	30.769	0.00	0.00	0.00	3.02
746	772	8.133754	GTATGTTAGGCATACGAACACATAAA	57.866	34.615	2.40	0.00	46.98	1.40
794	821	1.865865	TGTCAAGACTGTCTTTCGGC	58.134	50.000	19.89	12.16	33.78	5.54
895	922	0.597637	CTCTGCTTTCGACGTGTGGT	60.598	55.000	0.00	0.00	0.00	4.16
939	966	6.405508	CGCTACCTTTATCCAAGAGAACACTA	60.406	42.308	0.00	0.00	33.80	2.74
940	967	5.624738	CGCTACCTTTATCCAAGAGAACACT	60.625	44.000	0.00	0.00	33.80	3.55
1027	1056	4.060900	CCGAACTATCACATGGAGATTGG	58.939	47.826	8.02	5.35	0.00	3.16
1460	1498	5.061560	CAGTTACACTTCTCGCTTCTTGATC	59.938	44.000	0.00	0.00	0.00	2.92
1462	1500	4.037565	TCAGTTACACTTCTCGCTTCTTGA	59.962	41.667	0.00	0.00	0.00	3.02
1463	1501	4.299155	TCAGTTACACTTCTCGCTTCTTG	58.701	43.478	0.00	0.00	0.00	3.02
1464	1502	4.585955	TCAGTTACACTTCTCGCTTCTT	57.414	40.909	0.00	0.00	0.00	2.52
1466	1504	4.486090	TGATCAGTTACACTTCTCGCTTC	58.514	43.478	0.00	0.00	0.00	3.86
1468	1506	4.400884	AGATGATCAGTTACACTTCTCGCT	59.599	41.667	0.09	0.00	0.00	4.93
1469	1507	4.677584	AGATGATCAGTTACACTTCTCGC	58.322	43.478	0.09	0.00	0.00	5.03
1492	1583	8.711457	CAAGCACAAACACATCGATCATATATA	58.289	33.333	0.00	0.00	0.00	0.86
1495	1586	5.355071	ACAAGCACAAACACATCGATCATAT	59.645	36.000	0.00	0.00	0.00	1.78
1898	1990	1.665916	CAGTCACAGCACGGTCTGG	60.666	63.158	10.28	1.32	38.36	3.86
1939	2031	4.005650	GGATCACAGCAAAGATTCACTCA	58.994	43.478	0.00	0.00	0.00	3.41
1940	2032	4.005650	TGGATCACAGCAAAGATTCACTC	58.994	43.478	0.00	0.00	0.00	3.51
1941	2033	4.025040	TGGATCACAGCAAAGATTCACT	57.975	40.909	0.00	0.00	0.00	3.41
1942	2034	4.201990	GGATGGATCACAGCAAAGATTCAC	60.202	45.833	0.00	0.00	37.17	3.18
2074	2169	2.437895	TGGACGCTCGACTCCGAT	60.438	61.111	0.00	0.00	44.62	4.18
2075	2170	3.125573	CTGGACGCTCGACTCCGA	61.126	66.667	0.00	0.00	43.35	4.55
2188	2283	3.484742	GATCGTCGCCCTCATCGCA	62.485	63.158	0.00	0.00	0.00	5.10
2378	2473	5.650266	TGGTAAGGCAAACGAATTACATGAT	59.350	36.000	0.00	0.00	31.25	2.45
2391	2486	3.164268	ACAGCATCATTGGTAAGGCAAA	58.836	40.909	0.00	0.00	30.88	3.68
2425	2527	1.441732	CTCACAAGTGCAGTGCAGCA	61.442	55.000	20.42	0.00	40.08	4.41
2426	2528	1.281960	CTCACAAGTGCAGTGCAGC	59.718	57.895	20.42	13.52	40.08	5.25
2449	2551	2.616842	ACAACTGAAATGTCCCGTTCAC	59.383	45.455	0.00	0.00	30.73	3.18
2552	2881	5.501156	AGTCCCTATGAAAATTCACACCTC	58.499	41.667	0.00	0.00	40.49	3.85
2569	2898	1.685491	CCTAACTGCCGAGTAGTCCCT	60.685	57.143	0.00	0.00	0.00	4.20
2570	2899	0.745468	CCTAACTGCCGAGTAGTCCC	59.255	60.000	0.00	0.00	0.00	4.46
2628	2958	2.633488	GTGAGCCTCACAGATAAACCC	58.367	52.381	19.77	0.00	46.22	4.11
2646	2976	1.933853	GGAATCGTGAAATCCCTCGTG	59.066	52.381	0.00	0.00	0.00	4.35
2649	2979	2.565841	CCTGGAATCGTGAAATCCCTC	58.434	52.381	0.00	0.00	32.01	4.30
2664	2994	3.087343	TGACAAGATCAGCCCTGGA	57.913	52.632	0.00	0.00	31.91	3.86
2733	3063	0.179059	TCGACACCAAGAAGCTGCAA	60.179	50.000	1.02	0.00	0.00	4.08
2757	3087	1.135859	GTTGCAGATCAAGAACGCCTG	60.136	52.381	0.00	0.00	34.91	4.85
2823	3153	2.236395	GGTCAGGGTTAGCAAGCTTAGA	59.764	50.000	0.00	0.00	0.00	2.10
2887	3217	3.615056	CCGTAATTGTGTCATAGTTGCGA	59.385	43.478	14.50	0.00	31.15	5.10
2982	3312	5.880887	CCAGGAGGGTTTATTTCAAGTCTAC	59.119	44.000	0.00	0.00	0.00	2.59
2985	3315	4.918588	TCCAGGAGGGTTTATTTCAAGTC	58.081	43.478	0.00	0.00	38.11	3.01
3039	3369	3.215151	TCGGTGCATTTTGTTCCTGTTA	58.785	40.909	0.00	0.00	0.00	2.41
3040	3370	2.028130	TCGGTGCATTTTGTTCCTGTT	58.972	42.857	0.00	0.00	0.00	3.16
3047	3377	5.895636	TCTATGAATTCGGTGCATTTTGT	57.104	34.783	0.04	0.00	0.00	2.83
3049	3379	5.593909	TGGATCTATGAATTCGGTGCATTTT	59.406	36.000	0.04	0.00	0.00	1.82
3121	3451	2.422127	AGATATTTTTGCCCGTGTTCCG	59.578	45.455	0.00	0.00	0.00	4.30
3193	3523	3.958147	TGGTAAAGGAGATATGCTCGACA	59.042	43.478	0.00	0.00	44.91	4.35
3255	3585	2.076863	GTGTTCCATCTCCCTTTGACG	58.923	52.381	0.00	0.00	0.00	4.35
3416	3748	6.531240	GTGTGTATGGGTTGCAATTTATTCTG	59.469	38.462	0.59	0.00	0.00	3.02
3438	3771	0.618680	TCTGGCTAGGCATGAGGTGT	60.619	55.000	20.56	0.00	0.00	4.16
3439	3772	0.543277	TTCTGGCTAGGCATGAGGTG	59.457	55.000	20.56	7.04	0.00	4.00
3454	3787	3.072211	TGATGCAGAGCAACTTCTTCTG	58.928	45.455	0.00	0.00	43.62	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.