Multiple sequence alignment - TraesCS3A01G113100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G113100 chr3A 100.000 2043 0 0 739 2781 80412785 80414827 0.000000e+00 3773.0
1 TraesCS3A01G113100 chr3A 100.000 458 0 0 1 458 80412047 80412504 0.000000e+00 846.0
2 TraesCS3A01G113100 chr3A 95.000 60 3 0 1716 1775 80410188 80410129 8.200000e-16 95.3
3 TraesCS3A01G113100 chr3D 84.627 1997 139 71 847 2780 68842745 68844636 0.000000e+00 1832.0
4 TraesCS3A01G113100 chr3D 90.962 1040 65 20 739 1775 68430242 68431255 0.000000e+00 1373.0
5 TraesCS3A01G113100 chr3D 94.170 892 37 10 742 1625 68336118 68335234 0.000000e+00 1345.0
6 TraesCS3A01G113100 chr3D 89.262 1043 62 18 739 1775 68388866 68389864 0.000000e+00 1260.0
7 TraesCS3A01G113100 chr3D 89.696 854 45 13 782 1626 68833009 68833828 0.000000e+00 1050.0
8 TraesCS3A01G113100 chr3D 98.361 61 1 0 1715 1775 68335232 68335172 1.050000e-19 108.0
9 TraesCS3A01G113100 chr3B 87.451 1275 85 31 773 2028 112465931 112464713 0.000000e+00 1399.0
10 TraesCS3A01G113100 chr3B 91.944 931 59 8 739 1656 112948709 112947782 0.000000e+00 1290.0
11 TraesCS3A01G113100 chr3B 91.676 901 54 13 739 1626 112497465 112496573 0.000000e+00 1229.0
12 TraesCS3A01G113100 chr3B 88.370 1049 82 22 742 1775 113299572 113298549 0.000000e+00 1225.0
13 TraesCS3A01G113100 chr3B 92.980 812 45 9 739 1547 113483189 113483991 0.000000e+00 1173.0
14 TraesCS3A01G113100 chr3B 88.703 956 61 22 842 1775 112836253 112835323 0.000000e+00 1123.0
15 TraesCS3A01G113100 chr3B 87.609 686 46 12 2120 2781 112464532 112463862 0.000000e+00 760.0
16 TraesCS3A01G113100 chr3B 80.631 222 20 11 1553 1772 113487299 113487499 1.730000e-32 150.0
17 TraesCS3A01G113100 chr3B 96.774 62 2 0 1714 1775 112947756 112947695 1.360000e-18 104.0
18 TraesCS3A01G113100 chr3B 92.537 67 5 0 1714 1780 112496573 112496507 2.280000e-16 97.1
19 TraesCS3A01G113100 chr4D 90.090 888 58 13 743 1610 134550696 134549819 0.000000e+00 1125.0
20 TraesCS3A01G113100 chr4D 84.155 284 39 4 4 284 421546308 421546588 1.270000e-68 270.0
21 TraesCS3A01G113100 chr4A 86.081 273 32 5 20 289 655516707 655516976 3.500000e-74 289.0
22 TraesCS3A01G113100 chr2D 86.822 258 31 2 4 259 273021711 273021455 4.530000e-73 285.0
23 TraesCS3A01G113100 chr1D 85.821 268 33 4 19 285 418405077 418404814 2.110000e-71 279.0
24 TraesCS3A01G113100 chr6D 85.556 270 33 5 18 284 314500341 314500075 7.590000e-71 278.0
25 TraesCS3A01G113100 chr4B 85.768 267 33 4 20 284 546575858 546575595 7.590000e-71 278.0
26 TraesCS3A01G113100 chr4B 85.768 267 33 4 20 284 546598225 546597962 7.590000e-71 278.0
27 TraesCS3A01G113100 chr4B 84.211 285 38 5 4 284 52407554 52407273 1.270000e-68 270.0
28 TraesCS3A01G113100 chr4B 83.562 292 41 5 1 288 2487317 2487029 1.640000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G113100 chr3A 80412047 80414827 2780 False 2309.50 3773 100.0000 1 2781 2 chr3A.!!$F1 2780
1 TraesCS3A01G113100 chr3D 68842745 68844636 1891 False 1832.00 1832 84.6270 847 2780 1 chr3D.!!$F4 1933
2 TraesCS3A01G113100 chr3D 68430242 68431255 1013 False 1373.00 1373 90.9620 739 1775 1 chr3D.!!$F2 1036
3 TraesCS3A01G113100 chr3D 68388866 68389864 998 False 1260.00 1260 89.2620 739 1775 1 chr3D.!!$F1 1036
4 TraesCS3A01G113100 chr3D 68833009 68833828 819 False 1050.00 1050 89.6960 782 1626 1 chr3D.!!$F3 844
5 TraesCS3A01G113100 chr3D 68335172 68336118 946 True 726.50 1345 96.2655 742 1775 2 chr3D.!!$R1 1033
6 TraesCS3A01G113100 chr3B 113298549 113299572 1023 True 1225.00 1225 88.3700 742 1775 1 chr3B.!!$R2 1033
7 TraesCS3A01G113100 chr3B 112835323 112836253 930 True 1123.00 1123 88.7030 842 1775 1 chr3B.!!$R1 933
8 TraesCS3A01G113100 chr3B 112463862 112465931 2069 True 1079.50 1399 87.5300 773 2781 2 chr3B.!!$R3 2008
9 TraesCS3A01G113100 chr3B 112947695 112948709 1014 True 697.00 1290 94.3590 739 1775 2 chr3B.!!$R5 1036
10 TraesCS3A01G113100 chr3B 112496507 112497465 958 True 663.05 1229 92.1065 739 1780 2 chr3B.!!$R4 1041
11 TraesCS3A01G113100 chr3B 113483189 113487499 4310 False 661.50 1173 86.8055 739 1772 2 chr3B.!!$F1 1033
12 TraesCS3A01G113100 chr4D 134549819 134550696 877 True 1125.00 1125 90.0900 743 1610 1 chr4D.!!$R1 867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 5206 0.32336 TCCCCAGGTACAAATGCAGC 60.323 55.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.961396 ATGATCCTTGCAATCTGCTATTC 57.039 39.130 0.00 0.00 45.31 1.75
24 25 5.045012 TGATCCTTGCAATCTGCTATTCT 57.955 39.130 0.00 0.00 45.31 2.40
25 26 5.443283 TGATCCTTGCAATCTGCTATTCTT 58.557 37.500 0.00 0.00 45.31 2.52
26 27 5.889853 TGATCCTTGCAATCTGCTATTCTTT 59.110 36.000 0.00 0.00 45.31 2.52
27 28 7.056006 TGATCCTTGCAATCTGCTATTCTTTA 58.944 34.615 0.00 0.00 45.31 1.85
28 29 7.722728 TGATCCTTGCAATCTGCTATTCTTTAT 59.277 33.333 0.00 0.00 45.31 1.40
29 30 7.886629 TCCTTGCAATCTGCTATTCTTTATT 57.113 32.000 0.00 0.00 45.31 1.40
30 31 7.709947 TCCTTGCAATCTGCTATTCTTTATTG 58.290 34.615 0.00 0.00 45.31 1.90
31 32 6.420008 CCTTGCAATCTGCTATTCTTTATTGC 59.580 38.462 0.00 10.13 45.31 3.56
32 33 5.835257 TGCAATCTGCTATTCTTTATTGCC 58.165 37.500 13.46 0.00 45.30 4.52
33 34 4.913924 GCAATCTGCTATTCTTTATTGCCG 59.086 41.667 0.00 0.00 41.95 5.69
34 35 5.455392 CAATCTGCTATTCTTTATTGCCGG 58.545 41.667 0.00 0.00 34.59 6.13
35 36 2.878406 TCTGCTATTCTTTATTGCCGGC 59.122 45.455 22.73 22.73 34.59 6.13
36 37 1.601903 TGCTATTCTTTATTGCCGGCG 59.398 47.619 23.90 6.13 34.59 6.46
37 38 1.069227 GCTATTCTTTATTGCCGGCGG 60.069 52.381 24.35 24.35 0.00 6.13
38 39 2.218603 CTATTCTTTATTGCCGGCGGT 58.781 47.619 28.82 15.55 0.00 5.68
39 40 1.470051 ATTCTTTATTGCCGGCGGTT 58.530 45.000 28.82 15.17 0.00 4.44
40 41 0.523966 TTCTTTATTGCCGGCGGTTG 59.476 50.000 28.82 9.73 0.00 3.77
41 42 1.516169 CTTTATTGCCGGCGGTTGC 60.516 57.895 28.82 14.02 41.71 4.17
42 43 1.933115 CTTTATTGCCGGCGGTTGCT 61.933 55.000 28.82 12.39 42.25 3.91
44 45 3.910914 TATTGCCGGCGGTTGCTGT 62.911 57.895 28.82 10.39 46.53 4.40
48 49 3.726517 CCGGCGGTTGCTGTTCTG 61.727 66.667 19.97 0.00 46.53 3.02
49 50 2.664851 CGGCGGTTGCTGTTCTGA 60.665 61.111 0.00 0.00 42.79 3.27
50 51 2.034879 CGGCGGTTGCTGTTCTGAT 61.035 57.895 0.00 0.00 42.79 2.90
51 52 1.503542 GGCGGTTGCTGTTCTGATG 59.496 57.895 0.00 0.00 42.25 3.07
52 53 1.154150 GCGGTTGCTGTTCTGATGC 60.154 57.895 0.00 0.00 38.39 3.91
53 54 1.133253 CGGTTGCTGTTCTGATGCG 59.867 57.895 0.00 0.00 0.00 4.73
54 55 1.568612 CGGTTGCTGTTCTGATGCGT 61.569 55.000 0.00 0.00 0.00 5.24
55 56 0.593128 GGTTGCTGTTCTGATGCGTT 59.407 50.000 0.00 0.00 0.00 4.84
56 57 1.664016 GGTTGCTGTTCTGATGCGTTG 60.664 52.381 0.00 0.00 0.00 4.10
57 58 1.002468 GTTGCTGTTCTGATGCGTTGT 60.002 47.619 0.00 0.00 0.00 3.32
58 59 1.308047 TGCTGTTCTGATGCGTTGTT 58.692 45.000 0.00 0.00 0.00 2.83
59 60 1.264020 TGCTGTTCTGATGCGTTGTTC 59.736 47.619 0.00 0.00 0.00 3.18
60 61 1.400242 GCTGTTCTGATGCGTTGTTCC 60.400 52.381 0.00 0.00 0.00 3.62
61 62 2.146342 CTGTTCTGATGCGTTGTTCCT 58.854 47.619 0.00 0.00 0.00 3.36
62 63 3.325870 CTGTTCTGATGCGTTGTTCCTA 58.674 45.455 0.00 0.00 0.00 2.94
63 64 3.935203 CTGTTCTGATGCGTTGTTCCTAT 59.065 43.478 0.00 0.00 0.00 2.57
64 65 3.684305 TGTTCTGATGCGTTGTTCCTATG 59.316 43.478 0.00 0.00 0.00 2.23
65 66 3.885724 TCTGATGCGTTGTTCCTATGA 57.114 42.857 0.00 0.00 0.00 2.15
66 67 3.785486 TCTGATGCGTTGTTCCTATGAG 58.215 45.455 0.00 0.00 0.00 2.90
67 68 2.868583 CTGATGCGTTGTTCCTATGAGG 59.131 50.000 0.00 0.00 36.46 3.86
68 69 2.236146 TGATGCGTTGTTCCTATGAGGT 59.764 45.455 0.00 0.00 36.53 3.85
69 70 2.380084 TGCGTTGTTCCTATGAGGTC 57.620 50.000 0.00 0.00 36.53 3.85
70 71 1.899814 TGCGTTGTTCCTATGAGGTCT 59.100 47.619 0.00 0.00 36.53 3.85
71 72 2.301870 TGCGTTGTTCCTATGAGGTCTT 59.698 45.455 0.00 0.00 36.53 3.01
72 73 3.512329 TGCGTTGTTCCTATGAGGTCTTA 59.488 43.478 0.00 0.00 36.53 2.10
73 74 4.113354 GCGTTGTTCCTATGAGGTCTTAG 58.887 47.826 0.00 0.00 36.53 2.18
74 75 4.113354 CGTTGTTCCTATGAGGTCTTAGC 58.887 47.826 0.00 0.00 36.53 3.09
75 76 4.381612 CGTTGTTCCTATGAGGTCTTAGCA 60.382 45.833 0.00 0.00 36.53 3.49
76 77 4.737855 TGTTCCTATGAGGTCTTAGCAC 57.262 45.455 0.00 0.00 36.53 4.40
77 78 4.093743 TGTTCCTATGAGGTCTTAGCACA 58.906 43.478 0.00 0.00 36.53 4.57
78 79 4.530553 TGTTCCTATGAGGTCTTAGCACAA 59.469 41.667 0.00 0.00 36.53 3.33
79 80 5.012664 TGTTCCTATGAGGTCTTAGCACAAA 59.987 40.000 0.00 0.00 36.53 2.83
80 81 5.344743 TCCTATGAGGTCTTAGCACAAAG 57.655 43.478 0.00 0.00 36.53 2.77
81 82 5.023452 TCCTATGAGGTCTTAGCACAAAGA 58.977 41.667 0.00 0.00 36.53 2.52
88 89 3.040147 TCTTAGCACAAAGACTTCCCG 57.960 47.619 0.00 0.00 30.54 5.14
89 90 2.631062 TCTTAGCACAAAGACTTCCCGA 59.369 45.455 0.00 0.00 30.54 5.14
90 91 2.450609 TAGCACAAAGACTTCCCGAC 57.549 50.000 0.00 0.00 0.00 4.79
91 92 0.759346 AGCACAAAGACTTCCCGACT 59.241 50.000 0.00 0.00 0.00 4.18
92 93 1.968493 AGCACAAAGACTTCCCGACTA 59.032 47.619 0.00 0.00 0.00 2.59
93 94 2.567615 AGCACAAAGACTTCCCGACTAT 59.432 45.455 0.00 0.00 0.00 2.12
94 95 2.930682 GCACAAAGACTTCCCGACTATC 59.069 50.000 0.00 0.00 0.00 2.08
95 96 3.368531 GCACAAAGACTTCCCGACTATCT 60.369 47.826 0.00 0.00 0.00 1.98
96 97 4.142227 GCACAAAGACTTCCCGACTATCTA 60.142 45.833 0.00 0.00 0.00 1.98
97 98 5.341617 CACAAAGACTTCCCGACTATCTAC 58.658 45.833 0.00 0.00 0.00 2.59
98 99 5.125739 CACAAAGACTTCCCGACTATCTACT 59.874 44.000 0.00 0.00 0.00 2.57
99 100 6.318144 CACAAAGACTTCCCGACTATCTACTA 59.682 42.308 0.00 0.00 0.00 1.82
100 101 6.318396 ACAAAGACTTCCCGACTATCTACTAC 59.682 42.308 0.00 0.00 0.00 2.73
101 102 5.627182 AGACTTCCCGACTATCTACTACA 57.373 43.478 0.00 0.00 0.00 2.74
102 103 5.999044 AGACTTCCCGACTATCTACTACAA 58.001 41.667 0.00 0.00 0.00 2.41
103 104 5.821995 AGACTTCCCGACTATCTACTACAAC 59.178 44.000 0.00 0.00 0.00 3.32
104 105 5.503927 ACTTCCCGACTATCTACTACAACA 58.496 41.667 0.00 0.00 0.00 3.33
105 106 5.948162 ACTTCCCGACTATCTACTACAACAA 59.052 40.000 0.00 0.00 0.00 2.83
106 107 6.095160 ACTTCCCGACTATCTACTACAACAAG 59.905 42.308 0.00 0.00 0.00 3.16
107 108 5.503927 TCCCGACTATCTACTACAACAAGT 58.496 41.667 0.00 0.00 0.00 3.16
108 109 5.948162 TCCCGACTATCTACTACAACAAGTT 59.052 40.000 0.00 0.00 0.00 2.66
109 110 6.435277 TCCCGACTATCTACTACAACAAGTTT 59.565 38.462 0.00 0.00 0.00 2.66
110 111 7.039504 TCCCGACTATCTACTACAACAAGTTTT 60.040 37.037 0.00 0.00 0.00 2.43
111 112 7.063074 CCCGACTATCTACTACAACAAGTTTTG 59.937 40.741 0.00 0.00 0.00 2.44
112 113 7.411588 CCGACTATCTACTACAACAAGTTTTGC 60.412 40.741 0.00 0.00 0.00 3.68
113 114 7.328737 CGACTATCTACTACAACAAGTTTTGCT 59.671 37.037 0.00 0.00 0.00 3.91
114 115 8.535690 ACTATCTACTACAACAAGTTTTGCTC 57.464 34.615 0.00 0.00 0.00 4.26
115 116 5.900339 TCTACTACAACAAGTTTTGCTCG 57.100 39.130 0.00 0.00 0.00 5.03
116 117 3.963383 ACTACAACAAGTTTTGCTCGG 57.037 42.857 0.00 0.00 0.00 4.63
117 118 2.032924 ACTACAACAAGTTTTGCTCGGC 59.967 45.455 0.00 0.00 0.00 5.54
118 119 1.102978 ACAACAAGTTTTGCTCGGCT 58.897 45.000 0.00 0.00 0.00 5.52
119 120 1.065551 ACAACAAGTTTTGCTCGGCTC 59.934 47.619 0.00 0.00 0.00 4.70
120 121 0.668535 AACAAGTTTTGCTCGGCTCC 59.331 50.000 0.00 0.00 0.00 4.70
121 122 1.207593 CAAGTTTTGCTCGGCTCCG 59.792 57.895 1.14 1.14 41.35 4.63
122 123 1.070786 AAGTTTTGCTCGGCTCCGA 59.929 52.632 10.84 10.84 46.87 4.55
135 136 2.523412 TCCGATAAGGGAGGGGCG 60.523 66.667 0.00 0.00 41.52 6.13
136 137 3.626924 CCGATAAGGGAGGGGCGG 61.627 72.222 0.00 0.00 35.97 6.13
137 138 2.842936 CGATAAGGGAGGGGCGGT 60.843 66.667 0.00 0.00 0.00 5.68
138 139 2.829592 GATAAGGGAGGGGCGGTG 59.170 66.667 0.00 0.00 0.00 4.94
139 140 1.764854 GATAAGGGAGGGGCGGTGA 60.765 63.158 0.00 0.00 0.00 4.02
140 141 2.041206 GATAAGGGAGGGGCGGTGAC 62.041 65.000 0.00 0.00 0.00 3.67
163 164 3.414700 CGCGTCTTTGGCTCGCTT 61.415 61.111 0.00 0.00 46.31 4.68
164 165 2.476499 GCGTCTTTGGCTCGCTTC 59.524 61.111 0.00 0.00 45.29 3.86
165 166 2.317609 GCGTCTTTGGCTCGCTTCA 61.318 57.895 0.00 0.00 45.29 3.02
166 167 1.784062 CGTCTTTGGCTCGCTTCAG 59.216 57.895 0.00 0.00 0.00 3.02
167 168 0.946221 CGTCTTTGGCTCGCTTCAGT 60.946 55.000 0.00 0.00 0.00 3.41
168 169 0.514691 GTCTTTGGCTCGCTTCAGTG 59.485 55.000 0.00 0.00 0.00 3.66
169 170 1.208614 CTTTGGCTCGCTTCAGTGC 59.791 57.895 0.00 0.00 0.00 4.40
170 171 1.227943 TTTGGCTCGCTTCAGTGCT 60.228 52.632 0.00 0.00 0.00 4.40
171 172 0.819259 TTTGGCTCGCTTCAGTGCTT 60.819 50.000 0.00 0.00 0.00 3.91
172 173 1.509644 TTGGCTCGCTTCAGTGCTTG 61.510 55.000 0.00 0.00 0.00 4.01
173 174 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
174 175 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
175 176 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
176 177 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
177 178 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
178 179 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
179 180 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
180 181 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
181 182 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
182 183 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
183 184 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
184 185 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
185 186 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
186 187 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
187 188 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
188 189 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
189 190 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
190 191 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
191 192 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
192 193 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
193 194 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
194 195 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
195 196 1.002684 GTCGTCGCTAGGTGGTCTATG 60.003 57.143 0.00 0.00 0.00 2.23
196 197 1.134310 TCGTCGCTAGGTGGTCTATGA 60.134 52.381 0.00 0.00 0.00 2.15
197 198 1.674441 CGTCGCTAGGTGGTCTATGAA 59.326 52.381 0.00 0.00 0.00 2.57
198 199 2.293677 CGTCGCTAGGTGGTCTATGAAT 59.706 50.000 0.00 0.00 0.00 2.57
199 200 3.609644 CGTCGCTAGGTGGTCTATGAATC 60.610 52.174 0.00 0.00 0.00 2.52
200 201 3.570550 GTCGCTAGGTGGTCTATGAATCT 59.429 47.826 0.00 0.00 0.00 2.40
201 202 3.570125 TCGCTAGGTGGTCTATGAATCTG 59.430 47.826 0.00 0.00 0.00 2.90
202 203 3.305676 CGCTAGGTGGTCTATGAATCTGG 60.306 52.174 0.00 0.00 0.00 3.86
203 204 3.643792 GCTAGGTGGTCTATGAATCTGGT 59.356 47.826 0.00 0.00 0.00 4.00
204 205 4.502259 GCTAGGTGGTCTATGAATCTGGTG 60.502 50.000 0.00 0.00 0.00 4.17
205 206 3.454858 AGGTGGTCTATGAATCTGGTGT 58.545 45.455 0.00 0.00 0.00 4.16
206 207 4.620723 AGGTGGTCTATGAATCTGGTGTA 58.379 43.478 0.00 0.00 0.00 2.90
207 208 5.219739 AGGTGGTCTATGAATCTGGTGTAT 58.780 41.667 0.00 0.00 0.00 2.29
208 209 5.667626 AGGTGGTCTATGAATCTGGTGTATT 59.332 40.000 0.00 0.00 0.00 1.89
209 210 6.158695 AGGTGGTCTATGAATCTGGTGTATTT 59.841 38.462 0.00 0.00 0.00 1.40
210 211 6.828785 GGTGGTCTATGAATCTGGTGTATTTT 59.171 38.462 0.00 0.00 0.00 1.82
211 212 7.339466 GGTGGTCTATGAATCTGGTGTATTTTT 59.661 37.037 0.00 0.00 0.00 1.94
245 246 9.500785 TTTCTGATATTTGTTGTACTGACATGA 57.499 29.630 0.00 0.00 34.86 3.07
246 247 9.671279 TTCTGATATTTGTTGTACTGACATGAT 57.329 29.630 0.00 0.74 34.86 2.45
247 248 9.671279 TCTGATATTTGTTGTACTGACATGATT 57.329 29.630 0.00 0.00 34.86 2.57
248 249 9.712359 CTGATATTTGTTGTACTGACATGATTG 57.288 33.333 0.00 0.00 34.86 2.67
249 250 9.447157 TGATATTTGTTGTACTGACATGATTGA 57.553 29.630 0.00 0.00 34.86 2.57
252 253 7.800155 TTTGTTGTACTGACATGATTGAAGA 57.200 32.000 0.00 0.00 34.86 2.87
253 254 7.984422 TTGTTGTACTGACATGATTGAAGAT 57.016 32.000 0.00 0.00 34.86 2.40
254 255 7.368480 TGTTGTACTGACATGATTGAAGATG 57.632 36.000 0.00 0.00 34.86 2.90
255 256 7.160726 TGTTGTACTGACATGATTGAAGATGA 58.839 34.615 0.00 0.00 34.86 2.92
256 257 7.661027 TGTTGTACTGACATGATTGAAGATGAA 59.339 33.333 0.00 0.00 34.86 2.57
257 258 8.671921 GTTGTACTGACATGATTGAAGATGAAT 58.328 33.333 0.00 0.00 34.86 2.57
258 259 9.889128 TTGTACTGACATGATTGAAGATGAATA 57.111 29.630 0.00 0.00 34.86 1.75
259 260 9.317936 TGTACTGACATGATTGAAGATGAATAC 57.682 33.333 0.00 0.00 0.00 1.89
260 261 7.474398 ACTGACATGATTGAAGATGAATACG 57.526 36.000 0.00 0.00 0.00 3.06
261 262 7.044181 ACTGACATGATTGAAGATGAATACGT 58.956 34.615 0.00 0.00 0.00 3.57
262 263 7.223582 ACTGACATGATTGAAGATGAATACGTC 59.776 37.037 0.00 0.00 0.00 4.34
263 264 7.041107 TGACATGATTGAAGATGAATACGTCA 58.959 34.615 0.00 0.00 41.67 4.35
264 265 7.223387 TGACATGATTGAAGATGAATACGTCAG 59.777 37.037 0.00 0.00 40.43 3.51
265 266 7.267857 ACATGATTGAAGATGAATACGTCAGA 58.732 34.615 0.00 0.00 40.43 3.27
266 267 7.930325 ACATGATTGAAGATGAATACGTCAGAT 59.070 33.333 0.00 0.00 40.43 2.90
267 268 8.771766 CATGATTGAAGATGAATACGTCAGATT 58.228 33.333 0.00 0.00 40.43 2.40
268 269 9.987272 ATGATTGAAGATGAATACGTCAGATTA 57.013 29.630 0.00 0.00 40.43 1.75
269 270 9.987272 TGATTGAAGATGAATACGTCAGATTAT 57.013 29.630 0.00 0.00 40.43 1.28
276 277 8.768955 AGATGAATACGTCAGATTATTTCTTGC 58.231 33.333 0.00 0.00 40.43 4.01
277 278 7.841915 TGAATACGTCAGATTATTTCTTGCA 57.158 32.000 0.00 0.00 29.93 4.08
278 279 8.262715 TGAATACGTCAGATTATTTCTTGCAA 57.737 30.769 0.00 0.00 29.93 4.08
279 280 8.726068 TGAATACGTCAGATTATTTCTTGCAAA 58.274 29.630 0.00 0.00 29.93 3.68
280 281 9.554724 GAATACGTCAGATTATTTCTTGCAAAA 57.445 29.630 0.00 0.00 29.93 2.44
281 282 9.906660 AATACGTCAGATTATTTCTTGCAAAAA 57.093 25.926 0.00 5.01 29.93 1.94
301 302 3.895232 AAAGAAGAAGCGCTCCTATCA 57.105 42.857 12.06 0.00 0.00 2.15
302 303 4.414337 AAAGAAGAAGCGCTCCTATCAT 57.586 40.909 12.06 0.00 0.00 2.45
303 304 5.537300 AAAGAAGAAGCGCTCCTATCATA 57.463 39.130 12.06 0.00 0.00 2.15
304 305 4.782019 AGAAGAAGCGCTCCTATCATAG 57.218 45.455 12.06 0.00 0.00 2.23
305 306 4.148838 AGAAGAAGCGCTCCTATCATAGT 58.851 43.478 12.06 0.00 0.00 2.12
306 307 4.586841 AGAAGAAGCGCTCCTATCATAGTT 59.413 41.667 12.06 0.00 0.00 2.24
307 308 4.946478 AGAAGCGCTCCTATCATAGTTT 57.054 40.909 12.06 0.00 0.00 2.66
308 309 5.283457 AGAAGCGCTCCTATCATAGTTTT 57.717 39.130 12.06 0.00 0.00 2.43
309 310 6.406692 AGAAGCGCTCCTATCATAGTTTTA 57.593 37.500 12.06 0.00 0.00 1.52
310 311 6.817184 AGAAGCGCTCCTATCATAGTTTTAA 58.183 36.000 12.06 0.00 0.00 1.52
311 312 7.272978 AGAAGCGCTCCTATCATAGTTTTAAA 58.727 34.615 12.06 0.00 0.00 1.52
312 313 7.769044 AGAAGCGCTCCTATCATAGTTTTAAAA 59.231 33.333 12.06 0.00 0.00 1.52
313 314 7.859325 AGCGCTCCTATCATAGTTTTAAAAA 57.141 32.000 2.64 0.00 0.00 1.94
336 337 7.552050 AAAAATCCACATGTAAAGATTCCCA 57.448 32.000 14.75 0.00 0.00 4.37
337 338 7.552050 AAAATCCACATGTAAAGATTCCCAA 57.448 32.000 14.75 0.00 0.00 4.12
338 339 6.530019 AATCCACATGTAAAGATTCCCAAC 57.470 37.500 0.00 0.00 0.00 3.77
339 340 4.340617 TCCACATGTAAAGATTCCCAACC 58.659 43.478 0.00 0.00 0.00 3.77
340 341 4.085733 CCACATGTAAAGATTCCCAACCA 58.914 43.478 0.00 0.00 0.00 3.67
341 342 4.711355 CCACATGTAAAGATTCCCAACCAT 59.289 41.667 0.00 0.00 0.00 3.55
342 343 5.394443 CCACATGTAAAGATTCCCAACCATG 60.394 44.000 0.00 0.00 35.69 3.66
343 344 5.418524 CACATGTAAAGATTCCCAACCATGA 59.581 40.000 0.00 0.00 34.17 3.07
344 345 5.418840 ACATGTAAAGATTCCCAACCATGAC 59.581 40.000 0.00 0.00 34.17 3.06
345 346 4.006989 TGTAAAGATTCCCAACCATGACG 58.993 43.478 0.00 0.00 0.00 4.35
346 347 2.128771 AAGATTCCCAACCATGACGG 57.871 50.000 0.00 0.00 42.50 4.79
361 362 2.279252 CGGTCCACGCGGATTAGG 60.279 66.667 12.47 4.13 45.33 2.69
362 363 2.588034 GGTCCACGCGGATTAGGC 60.588 66.667 12.47 0.00 45.33 3.93
363 364 2.588034 GTCCACGCGGATTAGGCC 60.588 66.667 12.47 0.00 45.33 5.19
380 381 2.732289 CCGAATAAGGCCCCAATGG 58.268 57.895 0.00 0.00 37.09 3.16
396 397 5.736951 CCAATGGGATTTAACCACTGAAA 57.263 39.130 0.00 0.00 37.41 2.69
397 398 6.107901 CCAATGGGATTTAACCACTGAAAA 57.892 37.500 0.00 0.00 37.41 2.29
398 399 6.710278 CCAATGGGATTTAACCACTGAAAAT 58.290 36.000 0.00 0.00 37.41 1.82
399 400 6.818142 CCAATGGGATTTAACCACTGAAAATC 59.182 38.462 0.00 0.00 37.41 2.17
400 401 7.310609 CCAATGGGATTTAACCACTGAAAATCT 60.311 37.037 0.00 0.00 37.41 2.40
401 402 7.797121 ATGGGATTTAACCACTGAAAATCTT 57.203 32.000 6.89 0.00 41.58 2.40
402 403 7.227049 TGGGATTTAACCACTGAAAATCTTC 57.773 36.000 6.89 2.34 38.86 2.87
403 404 6.780031 TGGGATTTAACCACTGAAAATCTTCA 59.220 34.615 6.89 4.29 38.86 3.02
404 405 7.288852 TGGGATTTAACCACTGAAAATCTTCAA 59.711 33.333 6.89 0.00 38.86 2.69
405 406 8.147704 GGGATTTAACCACTGAAAATCTTCAAA 58.852 33.333 6.89 0.00 41.05 2.69
406 407 9.710900 GGATTTAACCACTGAAAATCTTCAAAT 57.289 29.630 6.89 0.00 41.05 2.32
409 410 9.528018 TTTAACCACTGAAAATCTTCAAATGTC 57.472 29.630 0.00 0.00 41.05 3.06
410 411 6.966534 ACCACTGAAAATCTTCAAATGTCT 57.033 33.333 0.00 0.00 41.05 3.41
411 412 6.974965 ACCACTGAAAATCTTCAAATGTCTC 58.025 36.000 0.00 0.00 41.05 3.36
412 413 6.774656 ACCACTGAAAATCTTCAAATGTCTCT 59.225 34.615 0.00 0.00 41.05 3.10
413 414 7.082602 CCACTGAAAATCTTCAAATGTCTCTG 58.917 38.462 0.00 0.00 41.05 3.35
414 415 7.255381 CCACTGAAAATCTTCAAATGTCTCTGT 60.255 37.037 0.00 0.00 41.05 3.41
415 416 8.777413 CACTGAAAATCTTCAAATGTCTCTGTA 58.223 33.333 0.00 0.00 41.05 2.74
416 417 9.512588 ACTGAAAATCTTCAAATGTCTCTGTAT 57.487 29.630 0.00 0.00 41.05 2.29
417 418 9.770503 CTGAAAATCTTCAAATGTCTCTGTATG 57.229 33.333 0.00 0.00 41.05 2.39
418 419 8.239314 TGAAAATCTTCAAATGTCTCTGTATGC 58.761 33.333 0.00 0.00 38.65 3.14
419 420 7.934855 AAATCTTCAAATGTCTCTGTATGCT 57.065 32.000 0.00 0.00 0.00 3.79
420 421 7.934855 AATCTTCAAATGTCTCTGTATGCTT 57.065 32.000 0.00 0.00 0.00 3.91
421 422 6.732531 TCTTCAAATGTCTCTGTATGCTTG 57.267 37.500 0.00 0.00 0.00 4.01
422 423 6.233434 TCTTCAAATGTCTCTGTATGCTTGT 58.767 36.000 0.00 0.00 0.00 3.16
423 424 5.868043 TCAAATGTCTCTGTATGCTTGTG 57.132 39.130 0.00 0.00 0.00 3.33
424 425 4.696877 TCAAATGTCTCTGTATGCTTGTGG 59.303 41.667 0.00 0.00 0.00 4.17
425 426 3.988976 ATGTCTCTGTATGCTTGTGGT 57.011 42.857 0.00 0.00 0.00 4.16
426 427 5.420725 AATGTCTCTGTATGCTTGTGGTA 57.579 39.130 0.00 0.00 0.00 3.25
427 428 5.620738 ATGTCTCTGTATGCTTGTGGTAT 57.379 39.130 0.00 0.00 0.00 2.73
428 429 4.758688 TGTCTCTGTATGCTTGTGGTATG 58.241 43.478 0.00 0.00 0.00 2.39
429 430 3.557595 GTCTCTGTATGCTTGTGGTATGC 59.442 47.826 0.00 0.00 0.00 3.14
430 431 3.197549 TCTCTGTATGCTTGTGGTATGCA 59.802 43.478 0.00 0.00 42.73 3.96
432 433 5.070313 TCTCTGTATGCTTGTGGTATGCATA 59.930 40.000 1.16 1.16 45.27 3.14
437 438 4.652421 TGCTTGTGGTATGCATATTTGG 57.348 40.909 10.16 0.53 34.84 3.28
438 439 3.384146 TGCTTGTGGTATGCATATTTGGG 59.616 43.478 10.16 1.05 34.84 4.12
439 440 3.384467 GCTTGTGGTATGCATATTTGGGT 59.616 43.478 10.16 0.00 0.00 4.51
440 441 4.737352 GCTTGTGGTATGCATATTTGGGTG 60.737 45.833 10.16 0.09 0.00 4.61
441 442 2.692557 TGTGGTATGCATATTTGGGTGC 59.307 45.455 10.16 0.00 41.61 5.01
442 443 2.035832 GTGGTATGCATATTTGGGTGCC 59.964 50.000 10.16 4.30 40.56 5.01
443 444 1.269448 GGTATGCATATTTGGGTGCCG 59.731 52.381 10.16 0.00 40.56 5.69
444 445 1.953686 GTATGCATATTTGGGTGCCGT 59.046 47.619 10.16 0.00 40.56 5.68
445 446 2.356665 ATGCATATTTGGGTGCCGTA 57.643 45.000 0.00 0.00 40.56 4.02
446 447 2.130272 TGCATATTTGGGTGCCGTAA 57.870 45.000 0.00 0.00 40.56 3.18
447 448 2.447443 TGCATATTTGGGTGCCGTAAA 58.553 42.857 0.00 0.00 40.56 2.01
448 449 2.826128 TGCATATTTGGGTGCCGTAAAA 59.174 40.909 0.00 0.00 40.56 1.52
449 450 3.258372 TGCATATTTGGGTGCCGTAAAAA 59.742 39.130 0.00 0.00 40.56 1.94
764 765 6.268847 AGGAAAATCTCTCTATGCGTATCCTT 59.731 38.462 0.00 0.00 0.00 3.36
838 841 1.238439 ACCGCACAACCAATTCTGAG 58.762 50.000 0.00 0.00 0.00 3.35
867 870 6.462207 CGAACCTCTAGAACATTCTCCATCAT 60.462 42.308 0.00 0.00 38.70 2.45
868 871 6.172136 ACCTCTAGAACATTCTCCATCATG 57.828 41.667 0.00 0.00 38.70 3.07
881 884 1.473965 CCATCATGGGTCGAAGGACTG 60.474 57.143 0.00 0.00 42.97 3.51
1014 1023 5.049954 CACCAAAGCATTCCACAAAATTCAG 60.050 40.000 0.00 0.00 0.00 3.02
1115 1127 0.892358 CTTGGATGCCCCGATGATGG 60.892 60.000 0.00 0.00 37.93 3.51
1432 1453 4.724697 CGCAAGTTCGTGCTGCCG 62.725 66.667 8.76 0.19 42.62 5.69
1651 5004 7.009179 AGTGTCTGTCCTTTGATTTCATCTA 57.991 36.000 0.00 0.00 0.00 1.98
1753 5117 1.783250 AATGGGGATGATCTCCGGCC 61.783 60.000 6.89 0.00 40.96 6.13
1820 5186 5.526506 TTAAGTTAGATTAGAGGCCCGTC 57.473 43.478 0.00 0.00 0.00 4.79
1823 5189 3.637694 AGTTAGATTAGAGGCCCGTCTTC 59.362 47.826 0.00 0.00 0.00 2.87
1825 5191 3.596940 AGATTAGAGGCCCGTCTTCTA 57.403 47.619 0.00 0.00 0.00 2.10
1838 5206 6.086871 GCCCGTCTTCTAGAAATTTTGAAAG 58.913 40.000 6.63 0.00 0.00 2.62
1853 5221 3.921119 TGAAAGCTGCATTTGTACCTG 57.079 42.857 1.02 0.00 0.00 4.00
1875 5246 2.419159 GGGAAATTGGAGCCAGAATTGC 60.419 50.000 0.00 0.00 0.00 3.56
1891 5262 6.709846 CCAGAATTGCCAAATTTAGGTGAAAA 59.290 34.615 0.00 0.00 36.10 2.29
1892 5263 7.228308 CCAGAATTGCCAAATTTAGGTGAAAAA 59.772 33.333 0.00 0.00 36.10 1.94
1895 5266 9.396938 GAATTGCCAAATTTAGGTGAAAAATTG 57.603 29.630 0.00 0.00 36.81 2.32
1901 5273 9.323985 CCAAATTTAGGTGAAAAATTGAACAGA 57.676 29.630 0.00 0.00 36.81 3.41
1935 5307 2.029918 GGGTGTTTTGATGTCTGGCTTC 60.030 50.000 0.00 0.00 0.00 3.86
1938 5310 2.886523 TGTTTTGATGTCTGGCTTCTGG 59.113 45.455 0.00 0.00 0.00 3.86
1945 5317 0.035915 GTCTGGCTTCTGGGAAGGAC 60.036 60.000 8.98 4.94 0.00 3.85
1976 5348 3.532641 AAGGTTTCCTCCTGCAATCTT 57.467 42.857 0.00 0.00 37.93 2.40
1977 5349 2.800250 AGGTTTCCTCCTGCAATCTTG 58.200 47.619 0.00 0.00 36.35 3.02
1978 5350 4.626631 AAGGTTTCCTCCTGCAATCTTGC 61.627 47.826 7.96 7.96 43.30 4.01
2008 5382 2.080286 AGGAAAACTCACCATCGACG 57.920 50.000 0.00 0.00 0.00 5.12
2031 5405 6.073369 CGCCAAATTCGATTACACATATGAG 58.927 40.000 10.38 3.79 0.00 2.90
2037 5411 8.454293 AATTCGATTACACATATGAGATCGAC 57.546 34.615 23.28 7.30 44.58 4.20
2081 5509 3.212685 AGCTGATTTGGAGATAAGCTGC 58.787 45.455 0.00 0.00 41.39 5.25
2090 5518 4.449131 TGGAGATAAGCTGCATCTTGAAG 58.551 43.478 12.98 0.00 40.31 3.02
2194 5666 2.894000 CGCACAACTAAACGTGATTTCG 59.106 45.455 0.00 0.00 35.02 3.46
2195 5667 3.602946 CGCACAACTAAACGTGATTTCGT 60.603 43.478 0.00 0.00 46.19 3.85
2297 5793 9.706846 CAGAAAAATCAGTTCAAAAATTTCACC 57.293 29.630 0.00 0.00 0.00 4.02
2338 5834 6.683974 AGATGGTCCACTATCAAAATTTCG 57.316 37.500 0.00 0.00 36.45 3.46
2353 5849 1.563111 TTTCGTGTTGTGTCTCCGAC 58.437 50.000 0.00 0.00 0.00 4.79
2361 5857 0.038251 TGTGTCTCCGACATGTCAGC 60.038 55.000 24.93 12.04 44.63 4.26
2363 5859 1.153549 GTCTCCGACATGTCAGCCC 60.154 63.158 24.93 5.35 32.09 5.19
2364 5860 1.609210 TCTCCGACATGTCAGCCCA 60.609 57.895 24.93 2.24 0.00 5.36
2366 5862 1.003839 TCCGACATGTCAGCCCAAC 60.004 57.895 24.93 0.00 0.00 3.77
2370 5866 1.298859 GACATGTCAGCCCAACCGAC 61.299 60.000 21.07 0.00 0.00 4.79
2386 5882 0.104120 CGACCGCCATACATCTCCAA 59.896 55.000 0.00 0.00 0.00 3.53
2387 5883 1.270305 CGACCGCCATACATCTCCAAT 60.270 52.381 0.00 0.00 0.00 3.16
2398 5894 7.201848 GCCATACATCTCCAATGAAAATGAAGA 60.202 37.037 0.00 0.00 0.00 2.87
2399 5895 8.133627 CCATACATCTCCAATGAAAATGAAGAC 58.866 37.037 0.00 0.00 0.00 3.01
2410 5906 5.747565 TGAAAATGAAGACACGAACATGAC 58.252 37.500 0.00 0.00 0.00 3.06
2615 6112 3.183373 GCAACAAAATTTCAATTCGCGGA 59.817 39.130 6.13 0.00 0.00 5.54
2637 6136 5.413309 AGCAAGAGTTAGTAGTTGCATCT 57.587 39.130 8.47 2.28 46.28 2.90
2670 6175 6.942532 ATTGATGGTCCATATGTTACACAC 57.057 37.500 3.72 0.00 0.00 3.82
2695 6200 2.376808 ACAGCTTGATTCTCTCGTGG 57.623 50.000 0.00 0.00 0.00 4.94
2710 6215 1.819632 GTGGGCTCGTGGCATTAGG 60.820 63.158 13.29 0.00 44.01 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.913924 CGGCAATAAAGAATAGCAGATTGC 59.086 41.667 8.51 8.51 45.28 3.56
11 12 5.455392 CCGGCAATAAAGAATAGCAGATTG 58.545 41.667 0.00 0.00 0.00 2.67
12 13 4.022849 GCCGGCAATAAAGAATAGCAGATT 60.023 41.667 24.80 0.00 0.00 2.40
13 14 3.503748 GCCGGCAATAAAGAATAGCAGAT 59.496 43.478 24.80 0.00 0.00 2.90
14 15 2.878406 GCCGGCAATAAAGAATAGCAGA 59.122 45.455 24.80 0.00 0.00 4.26
15 16 2.349817 CGCCGGCAATAAAGAATAGCAG 60.350 50.000 28.98 0.00 0.00 4.24
16 17 1.601903 CGCCGGCAATAAAGAATAGCA 59.398 47.619 28.98 0.00 0.00 3.49
17 18 1.069227 CCGCCGGCAATAAAGAATAGC 60.069 52.381 28.98 0.00 0.00 2.97
18 19 2.218603 ACCGCCGGCAATAAAGAATAG 58.781 47.619 28.98 4.76 0.00 1.73
19 20 2.335316 ACCGCCGGCAATAAAGAATA 57.665 45.000 28.98 0.00 0.00 1.75
20 21 1.134175 CAACCGCCGGCAATAAAGAAT 59.866 47.619 28.98 0.00 0.00 2.40
21 22 0.523966 CAACCGCCGGCAATAAAGAA 59.476 50.000 28.98 0.00 0.00 2.52
22 23 1.928706 GCAACCGCCGGCAATAAAGA 61.929 55.000 28.98 0.00 0.00 2.52
23 24 1.516169 GCAACCGCCGGCAATAAAG 60.516 57.895 28.98 11.69 0.00 1.85
24 25 1.974343 AGCAACCGCCGGCAATAAA 60.974 52.632 28.98 0.00 39.83 1.40
25 26 2.360600 AGCAACCGCCGGCAATAA 60.361 55.556 28.98 0.00 39.83 1.40
26 27 3.130819 CAGCAACCGCCGGCAATA 61.131 61.111 28.98 0.00 39.83 1.90
31 32 3.726517 CAGAACAGCAACCGCCGG 61.727 66.667 0.00 0.00 39.83 6.13
32 33 2.034879 ATCAGAACAGCAACCGCCG 61.035 57.895 0.00 0.00 39.83 6.46
33 34 1.503542 CATCAGAACAGCAACCGCC 59.496 57.895 0.00 0.00 39.83 6.13
34 35 1.154150 GCATCAGAACAGCAACCGC 60.154 57.895 0.00 0.00 38.99 5.68
35 36 1.133253 CGCATCAGAACAGCAACCG 59.867 57.895 0.00 0.00 0.00 4.44
36 37 0.593128 AACGCATCAGAACAGCAACC 59.407 50.000 0.00 0.00 0.00 3.77
37 38 1.002468 ACAACGCATCAGAACAGCAAC 60.002 47.619 0.00 0.00 0.00 4.17
38 39 1.308047 ACAACGCATCAGAACAGCAA 58.692 45.000 0.00 0.00 0.00 3.91
39 40 1.264020 GAACAACGCATCAGAACAGCA 59.736 47.619 0.00 0.00 0.00 4.41
40 41 1.400242 GGAACAACGCATCAGAACAGC 60.400 52.381 0.00 0.00 0.00 4.40
41 42 2.146342 AGGAACAACGCATCAGAACAG 58.854 47.619 0.00 0.00 0.00 3.16
42 43 2.254546 AGGAACAACGCATCAGAACA 57.745 45.000 0.00 0.00 0.00 3.18
43 44 3.932710 TCATAGGAACAACGCATCAGAAC 59.067 43.478 0.00 0.00 0.00 3.01
44 45 4.183865 CTCATAGGAACAACGCATCAGAA 58.816 43.478 0.00 0.00 0.00 3.02
45 46 3.430790 CCTCATAGGAACAACGCATCAGA 60.431 47.826 0.00 0.00 37.67 3.27
46 47 2.868583 CCTCATAGGAACAACGCATCAG 59.131 50.000 0.00 0.00 37.67 2.90
47 48 2.236146 ACCTCATAGGAACAACGCATCA 59.764 45.455 0.00 0.00 37.67 3.07
48 49 2.866762 GACCTCATAGGAACAACGCATC 59.133 50.000 0.00 0.00 37.67 3.91
49 50 2.501723 AGACCTCATAGGAACAACGCAT 59.498 45.455 0.00 0.00 37.67 4.73
50 51 1.899814 AGACCTCATAGGAACAACGCA 59.100 47.619 0.00 0.00 37.67 5.24
51 52 2.674796 AGACCTCATAGGAACAACGC 57.325 50.000 0.00 0.00 37.67 4.84
52 53 4.113354 GCTAAGACCTCATAGGAACAACG 58.887 47.826 0.00 0.00 37.67 4.10
53 54 4.870991 GTGCTAAGACCTCATAGGAACAAC 59.129 45.833 0.00 0.00 37.67 3.32
54 55 4.530553 TGTGCTAAGACCTCATAGGAACAA 59.469 41.667 0.00 0.00 37.67 2.83
55 56 4.093743 TGTGCTAAGACCTCATAGGAACA 58.906 43.478 0.00 0.00 37.67 3.18
56 57 4.737855 TGTGCTAAGACCTCATAGGAAC 57.262 45.455 0.00 0.00 37.67 3.62
57 58 5.483937 TCTTTGTGCTAAGACCTCATAGGAA 59.516 40.000 0.00 0.00 37.67 3.36
58 59 5.023452 TCTTTGTGCTAAGACCTCATAGGA 58.977 41.667 0.00 0.00 37.67 2.94
59 60 5.112686 GTCTTTGTGCTAAGACCTCATAGG 58.887 45.833 13.03 0.00 45.27 2.57
68 69 2.631062 TCGGGAAGTCTTTGTGCTAAGA 59.369 45.455 0.00 0.00 0.00 2.10
69 70 2.737252 GTCGGGAAGTCTTTGTGCTAAG 59.263 50.000 0.00 0.00 0.00 2.18
70 71 2.367567 AGTCGGGAAGTCTTTGTGCTAA 59.632 45.455 0.00 0.00 0.00 3.09
71 72 1.968493 AGTCGGGAAGTCTTTGTGCTA 59.032 47.619 0.00 0.00 0.00 3.49
72 73 0.759346 AGTCGGGAAGTCTTTGTGCT 59.241 50.000 0.00 0.00 0.00 4.40
73 74 2.450609 TAGTCGGGAAGTCTTTGTGC 57.549 50.000 0.00 0.00 0.00 4.57
74 75 4.457834 AGATAGTCGGGAAGTCTTTGTG 57.542 45.455 0.00 0.00 0.00 3.33
75 76 5.262804 AGTAGATAGTCGGGAAGTCTTTGT 58.737 41.667 0.00 0.00 0.00 2.83
76 77 5.838531 AGTAGATAGTCGGGAAGTCTTTG 57.161 43.478 0.00 0.00 0.00 2.77
77 78 6.421485 TGTAGTAGATAGTCGGGAAGTCTTT 58.579 40.000 0.00 0.00 0.00 2.52
78 79 5.999044 TGTAGTAGATAGTCGGGAAGTCTT 58.001 41.667 0.00 0.00 0.00 3.01
79 80 5.627182 TGTAGTAGATAGTCGGGAAGTCT 57.373 43.478 0.00 0.00 0.00 3.24
80 81 5.587844 TGTTGTAGTAGATAGTCGGGAAGTC 59.412 44.000 0.00 0.00 0.00 3.01
81 82 5.503927 TGTTGTAGTAGATAGTCGGGAAGT 58.496 41.667 0.00 0.00 0.00 3.01
82 83 6.095160 ACTTGTTGTAGTAGATAGTCGGGAAG 59.905 42.308 0.00 0.00 0.00 3.46
83 84 5.948162 ACTTGTTGTAGTAGATAGTCGGGAA 59.052 40.000 0.00 0.00 0.00 3.97
84 85 5.503927 ACTTGTTGTAGTAGATAGTCGGGA 58.496 41.667 0.00 0.00 0.00 5.14
85 86 5.831702 ACTTGTTGTAGTAGATAGTCGGG 57.168 43.478 0.00 0.00 0.00 5.14
86 87 7.411588 GCAAAACTTGTTGTAGTAGATAGTCGG 60.412 40.741 0.00 0.00 0.00 4.79
87 88 7.328737 AGCAAAACTTGTTGTAGTAGATAGTCG 59.671 37.037 0.00 0.00 0.00 4.18
88 89 8.535690 AGCAAAACTTGTTGTAGTAGATAGTC 57.464 34.615 0.00 0.00 0.00 2.59
89 90 7.328737 CGAGCAAAACTTGTTGTAGTAGATAGT 59.671 37.037 0.00 0.00 0.00 2.12
90 91 7.201444 CCGAGCAAAACTTGTTGTAGTAGATAG 60.201 40.741 0.00 0.00 0.00 2.08
91 92 6.588756 CCGAGCAAAACTTGTTGTAGTAGATA 59.411 38.462 0.00 0.00 0.00 1.98
92 93 5.408604 CCGAGCAAAACTTGTTGTAGTAGAT 59.591 40.000 0.00 0.00 0.00 1.98
93 94 4.748102 CCGAGCAAAACTTGTTGTAGTAGA 59.252 41.667 0.00 0.00 0.00 2.59
94 95 4.610680 GCCGAGCAAAACTTGTTGTAGTAG 60.611 45.833 0.00 0.00 0.00 2.57
95 96 3.249080 GCCGAGCAAAACTTGTTGTAGTA 59.751 43.478 0.00 0.00 0.00 1.82
96 97 2.032924 GCCGAGCAAAACTTGTTGTAGT 59.967 45.455 0.00 0.00 0.00 2.73
97 98 2.290641 AGCCGAGCAAAACTTGTTGTAG 59.709 45.455 0.00 0.00 0.00 2.74
98 99 2.289547 GAGCCGAGCAAAACTTGTTGTA 59.710 45.455 0.00 0.00 0.00 2.41
99 100 1.065551 GAGCCGAGCAAAACTTGTTGT 59.934 47.619 0.00 0.00 0.00 3.32
100 101 1.600413 GGAGCCGAGCAAAACTTGTTG 60.600 52.381 0.00 0.00 0.00 3.33
101 102 0.668535 GGAGCCGAGCAAAACTTGTT 59.331 50.000 0.00 0.00 0.00 2.83
102 103 1.507141 CGGAGCCGAGCAAAACTTGT 61.507 55.000 2.00 0.00 42.83 3.16
103 104 1.207593 CGGAGCCGAGCAAAACTTG 59.792 57.895 2.00 0.00 42.83 3.16
104 105 1.070786 TCGGAGCCGAGCAAAACTT 59.929 52.632 7.66 0.00 44.01 2.66
105 106 2.741092 TCGGAGCCGAGCAAAACT 59.259 55.556 7.66 0.00 44.01 2.66
118 119 2.523412 CGCCCCTCCCTTATCGGA 60.523 66.667 0.00 0.00 33.16 4.55
119 120 3.626924 CCGCCCCTCCCTTATCGG 61.627 72.222 0.00 0.00 0.00 4.18
120 121 2.842936 ACCGCCCCTCCCTTATCG 60.843 66.667 0.00 0.00 0.00 2.92
121 122 1.764854 TCACCGCCCCTCCCTTATC 60.765 63.158 0.00 0.00 0.00 1.75
122 123 2.070650 GTCACCGCCCCTCCCTTAT 61.071 63.158 0.00 0.00 0.00 1.73
123 124 2.686106 GTCACCGCCCCTCCCTTA 60.686 66.667 0.00 0.00 0.00 2.69
148 149 0.946221 ACTGAAGCGAGCCAAAGACG 60.946 55.000 0.00 0.00 0.00 4.18
149 150 0.514691 CACTGAAGCGAGCCAAAGAC 59.485 55.000 0.00 0.00 0.00 3.01
150 151 1.230635 GCACTGAAGCGAGCCAAAGA 61.231 55.000 0.00 0.00 0.00 2.52
151 152 1.208614 GCACTGAAGCGAGCCAAAG 59.791 57.895 0.00 0.00 0.00 2.77
152 153 0.819259 AAGCACTGAAGCGAGCCAAA 60.819 50.000 0.00 0.00 40.15 3.28
153 154 1.227943 AAGCACTGAAGCGAGCCAA 60.228 52.632 0.00 0.00 40.15 4.52
154 155 1.962822 CAAGCACTGAAGCGAGCCA 60.963 57.895 0.00 0.00 40.15 4.75
155 156 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
156 157 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
157 158 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
158 159 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
159 160 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
160 161 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
161 162 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
162 163 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
163 164 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
164 165 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
165 166 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
166 167 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
167 168 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
168 169 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
169 170 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
170 171 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
171 172 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
172 173 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
173 174 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
174 175 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
175 176 1.002684 CATAGACCACCTAGCGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
176 177 1.134310 TCATAGACCACCTAGCGACGA 60.134 52.381 0.00 0.00 0.00 4.20
177 178 1.306148 TCATAGACCACCTAGCGACG 58.694 55.000 0.00 0.00 0.00 5.12
178 179 3.570550 AGATTCATAGACCACCTAGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
179 180 3.570125 CAGATTCATAGACCACCTAGCGA 59.430 47.826 0.00 0.00 0.00 4.93
180 181 3.305676 CCAGATTCATAGACCACCTAGCG 60.306 52.174 0.00 0.00 0.00 4.26
181 182 3.643792 ACCAGATTCATAGACCACCTAGC 59.356 47.826 0.00 0.00 0.00 3.42
182 183 4.651503 ACACCAGATTCATAGACCACCTAG 59.348 45.833 0.00 0.00 0.00 3.02
183 184 4.620723 ACACCAGATTCATAGACCACCTA 58.379 43.478 0.00 0.00 0.00 3.08
184 185 3.454858 ACACCAGATTCATAGACCACCT 58.545 45.455 0.00 0.00 0.00 4.00
185 186 3.914426 ACACCAGATTCATAGACCACC 57.086 47.619 0.00 0.00 0.00 4.61
186 187 7.865706 AAAATACACCAGATTCATAGACCAC 57.134 36.000 0.00 0.00 0.00 4.16
219 220 9.500785 TCATGTCAGTACAACAAATATCAGAAA 57.499 29.630 5.35 0.00 39.58 2.52
220 221 9.671279 ATCATGTCAGTACAACAAATATCAGAA 57.329 29.630 5.35 0.00 39.58 3.02
221 222 9.671279 AATCATGTCAGTACAACAAATATCAGA 57.329 29.630 5.35 0.00 39.58 3.27
222 223 9.712359 CAATCATGTCAGTACAACAAATATCAG 57.288 33.333 5.35 0.00 39.58 2.90
223 224 9.447157 TCAATCATGTCAGTACAACAAATATCA 57.553 29.630 5.35 0.00 39.58 2.15
226 227 9.500785 TCTTCAATCATGTCAGTACAACAAATA 57.499 29.630 5.35 0.00 39.58 1.40
227 228 8.394971 TCTTCAATCATGTCAGTACAACAAAT 57.605 30.769 5.35 1.11 39.58 2.32
228 229 7.800155 TCTTCAATCATGTCAGTACAACAAA 57.200 32.000 5.35 0.00 39.58 2.83
229 230 7.661027 TCATCTTCAATCATGTCAGTACAACAA 59.339 33.333 5.35 0.00 39.58 2.83
230 231 7.160726 TCATCTTCAATCATGTCAGTACAACA 58.839 34.615 3.88 3.88 39.58 3.33
231 232 7.601073 TCATCTTCAATCATGTCAGTACAAC 57.399 36.000 0.00 0.00 39.58 3.32
232 233 8.797350 ATTCATCTTCAATCATGTCAGTACAA 57.203 30.769 0.00 0.00 39.58 2.41
233 234 9.317936 GTATTCATCTTCAATCATGTCAGTACA 57.682 33.333 0.00 0.00 40.69 2.90
234 235 8.483218 CGTATTCATCTTCAATCATGTCAGTAC 58.517 37.037 0.00 0.00 0.00 2.73
235 236 8.197439 ACGTATTCATCTTCAATCATGTCAGTA 58.803 33.333 0.00 0.00 0.00 2.74
236 237 7.044181 ACGTATTCATCTTCAATCATGTCAGT 58.956 34.615 0.00 0.00 0.00 3.41
237 238 7.223387 TGACGTATTCATCTTCAATCATGTCAG 59.777 37.037 0.00 0.00 0.00 3.51
238 239 7.041107 TGACGTATTCATCTTCAATCATGTCA 58.959 34.615 0.00 0.00 0.00 3.58
239 240 7.436376 TCTGACGTATTCATCTTCAATCATGTC 59.564 37.037 0.00 0.00 32.17 3.06
240 241 7.267857 TCTGACGTATTCATCTTCAATCATGT 58.732 34.615 0.00 0.00 32.17 3.21
241 242 7.704789 TCTGACGTATTCATCTTCAATCATG 57.295 36.000 0.00 0.00 32.17 3.07
242 243 8.899427 AATCTGACGTATTCATCTTCAATCAT 57.101 30.769 0.00 0.00 32.17 2.45
243 244 9.987272 ATAATCTGACGTATTCATCTTCAATCA 57.013 29.630 0.00 0.00 32.17 2.57
250 251 8.768955 GCAAGAAATAATCTGACGTATTCATCT 58.231 33.333 0.00 0.00 38.79 2.90
251 252 8.551205 TGCAAGAAATAATCTGACGTATTCATC 58.449 33.333 0.00 0.00 38.79 2.92
252 253 8.437360 TGCAAGAAATAATCTGACGTATTCAT 57.563 30.769 0.00 0.00 38.79 2.57
253 254 7.841915 TGCAAGAAATAATCTGACGTATTCA 57.158 32.000 0.00 0.00 38.79 2.57
254 255 9.554724 TTTTGCAAGAAATAATCTGACGTATTC 57.445 29.630 0.00 0.00 38.79 1.75
255 256 9.906660 TTTTTGCAAGAAATAATCTGACGTATT 57.093 25.926 0.00 0.00 38.79 1.89
279 280 4.579869 TGATAGGAGCGCTTCTTCTTTTT 58.420 39.130 26.28 0.00 31.56 1.94
280 281 4.207891 TGATAGGAGCGCTTCTTCTTTT 57.792 40.909 26.28 0.00 31.56 2.27
281 282 3.895232 TGATAGGAGCGCTTCTTCTTT 57.105 42.857 26.28 6.70 31.56 2.52
282 283 4.586841 ACTATGATAGGAGCGCTTCTTCTT 59.413 41.667 26.28 19.16 31.56 2.52
283 284 4.148838 ACTATGATAGGAGCGCTTCTTCT 58.851 43.478 26.28 12.18 34.25 2.85
284 285 4.513198 ACTATGATAGGAGCGCTTCTTC 57.487 45.455 26.28 20.13 0.00 2.87
285 286 4.946478 AACTATGATAGGAGCGCTTCTT 57.054 40.909 26.28 11.93 0.00 2.52
286 287 4.946478 AAACTATGATAGGAGCGCTTCT 57.054 40.909 24.37 24.37 0.00 2.85
287 288 7.478520 TTTAAAACTATGATAGGAGCGCTTC 57.521 36.000 13.26 10.56 0.00 3.86
288 289 7.859325 TTTTAAAACTATGATAGGAGCGCTT 57.141 32.000 13.26 0.00 0.00 4.68
289 290 7.859325 TTTTTAAAACTATGATAGGAGCGCT 57.141 32.000 11.27 11.27 0.00 5.92
312 313 7.552050 TGGGAATCTTTACATGTGGATTTTT 57.448 32.000 9.11 0.00 0.00 1.94
313 314 7.386059 GTTGGGAATCTTTACATGTGGATTTT 58.614 34.615 9.11 0.00 0.00 1.82
314 315 6.070824 GGTTGGGAATCTTTACATGTGGATTT 60.071 38.462 9.11 0.00 0.00 2.17
315 316 5.422012 GGTTGGGAATCTTTACATGTGGATT 59.578 40.000 9.11 14.53 0.00 3.01
316 317 4.956075 GGTTGGGAATCTTTACATGTGGAT 59.044 41.667 9.11 6.78 0.00 3.41
317 318 4.202620 TGGTTGGGAATCTTTACATGTGGA 60.203 41.667 9.11 4.56 0.00 4.02
318 319 4.085733 TGGTTGGGAATCTTTACATGTGG 58.914 43.478 9.11 0.00 0.00 4.17
319 320 5.418524 TCATGGTTGGGAATCTTTACATGTG 59.581 40.000 9.11 0.00 36.68 3.21
320 321 5.418840 GTCATGGTTGGGAATCTTTACATGT 59.581 40.000 2.69 2.69 36.68 3.21
321 322 5.449041 CGTCATGGTTGGGAATCTTTACATG 60.449 44.000 0.00 0.00 36.66 3.21
322 323 4.640201 CGTCATGGTTGGGAATCTTTACAT 59.360 41.667 0.00 0.00 0.00 2.29
323 324 4.006989 CGTCATGGTTGGGAATCTTTACA 58.993 43.478 0.00 0.00 0.00 2.41
324 325 3.377172 CCGTCATGGTTGGGAATCTTTAC 59.623 47.826 0.00 0.00 0.00 2.01
325 326 3.616219 CCGTCATGGTTGGGAATCTTTA 58.384 45.455 0.00 0.00 0.00 1.85
326 327 2.446435 CCGTCATGGTTGGGAATCTTT 58.554 47.619 0.00 0.00 0.00 2.52
327 328 2.128771 CCGTCATGGTTGGGAATCTT 57.871 50.000 0.00 0.00 0.00 2.40
328 329 3.882131 CCGTCATGGTTGGGAATCT 57.118 52.632 0.00 0.00 0.00 2.40
339 340 4.429212 TCCGCGTGGACCGTCATG 62.429 66.667 15.21 0.00 40.17 3.07
362 363 2.732289 CCATTGGGGCCTTATTCGG 58.268 57.895 0.84 0.00 0.00 4.30
373 374 3.707316 TCAGTGGTTAAATCCCATTGGG 58.293 45.455 16.26 16.26 46.11 4.12
374 375 5.736951 TTTCAGTGGTTAAATCCCATTGG 57.263 39.130 6.34 0.00 39.45 3.16
375 376 7.614494 AGATTTTCAGTGGTTAAATCCCATTG 58.386 34.615 16.07 1.03 40.12 2.82
376 377 7.797121 AGATTTTCAGTGGTTAAATCCCATT 57.203 32.000 16.07 3.31 38.45 3.16
377 378 7.454380 TGAAGATTTTCAGTGGTTAAATCCCAT 59.546 33.333 16.07 8.35 38.37 4.00
378 379 6.780031 TGAAGATTTTCAGTGGTTAAATCCCA 59.220 34.615 16.07 13.26 38.37 4.37
379 380 7.227049 TGAAGATTTTCAGTGGTTAAATCCC 57.773 36.000 16.07 11.78 38.37 3.85
380 381 9.710900 ATTTGAAGATTTTCAGTGGTTAAATCC 57.289 29.630 16.07 8.07 43.76 3.01
383 384 9.528018 GACATTTGAAGATTTTCAGTGGTTAAA 57.472 29.630 14.04 0.86 43.76 1.52
384 385 8.912988 AGACATTTGAAGATTTTCAGTGGTTAA 58.087 29.630 14.04 1.42 43.76 2.01
385 386 8.463930 AGACATTTGAAGATTTTCAGTGGTTA 57.536 30.769 14.04 0.00 43.76 2.85
386 387 7.286316 AGAGACATTTGAAGATTTTCAGTGGTT 59.714 33.333 14.04 5.61 43.76 3.67
387 388 6.774656 AGAGACATTTGAAGATTTTCAGTGGT 59.225 34.615 14.04 7.77 43.76 4.16
388 389 7.082602 CAGAGACATTTGAAGATTTTCAGTGG 58.917 38.462 14.04 5.40 43.76 4.00
389 390 7.646314 ACAGAGACATTTGAAGATTTTCAGTG 58.354 34.615 10.16 10.16 43.76 3.66
390 391 7.814264 ACAGAGACATTTGAAGATTTTCAGT 57.186 32.000 0.00 0.00 43.76 3.41
391 392 9.770503 CATACAGAGACATTTGAAGATTTTCAG 57.229 33.333 0.00 0.00 43.76 3.02
392 393 8.239314 GCATACAGAGACATTTGAAGATTTTCA 58.761 33.333 0.00 0.00 41.44 2.69
393 394 8.457261 AGCATACAGAGACATTTGAAGATTTTC 58.543 33.333 0.00 0.00 0.00 2.29
394 395 8.345724 AGCATACAGAGACATTTGAAGATTTT 57.654 30.769 0.00 0.00 0.00 1.82
395 396 7.934855 AGCATACAGAGACATTTGAAGATTT 57.065 32.000 0.00 0.00 0.00 2.17
396 397 7.392673 ACAAGCATACAGAGACATTTGAAGATT 59.607 33.333 0.00 0.00 0.00 2.40
397 398 6.883217 ACAAGCATACAGAGACATTTGAAGAT 59.117 34.615 0.00 0.00 0.00 2.40
398 399 6.148315 CACAAGCATACAGAGACATTTGAAGA 59.852 38.462 0.00 0.00 0.00 2.87
399 400 6.312487 CACAAGCATACAGAGACATTTGAAG 58.688 40.000 0.00 0.00 0.00 3.02
400 401 5.181811 CCACAAGCATACAGAGACATTTGAA 59.818 40.000 0.00 0.00 0.00 2.69
401 402 4.696877 CCACAAGCATACAGAGACATTTGA 59.303 41.667 0.00 0.00 0.00 2.69
402 403 4.456911 ACCACAAGCATACAGAGACATTTG 59.543 41.667 0.00 0.00 0.00 2.32
403 404 4.655963 ACCACAAGCATACAGAGACATTT 58.344 39.130 0.00 0.00 0.00 2.32
404 405 4.292186 ACCACAAGCATACAGAGACATT 57.708 40.909 0.00 0.00 0.00 2.71
405 406 3.988976 ACCACAAGCATACAGAGACAT 57.011 42.857 0.00 0.00 0.00 3.06
406 407 4.758688 CATACCACAAGCATACAGAGACA 58.241 43.478 0.00 0.00 0.00 3.41
407 408 3.557595 GCATACCACAAGCATACAGAGAC 59.442 47.826 0.00 0.00 0.00 3.36
408 409 3.197549 TGCATACCACAAGCATACAGAGA 59.802 43.478 0.00 0.00 32.55 3.10
409 410 3.534554 TGCATACCACAAGCATACAGAG 58.465 45.455 0.00 0.00 32.55 3.35
410 411 3.625649 TGCATACCACAAGCATACAGA 57.374 42.857 0.00 0.00 32.55 3.41
416 417 3.384146 CCCAAATATGCATACCACAAGCA 59.616 43.478 8.99 0.00 43.14 3.91
417 418 3.384467 ACCCAAATATGCATACCACAAGC 59.616 43.478 8.99 0.00 0.00 4.01
418 419 4.737352 GCACCCAAATATGCATACCACAAG 60.737 45.833 8.99 0.00 41.65 3.16
419 420 3.131933 GCACCCAAATATGCATACCACAA 59.868 43.478 8.99 0.00 41.65 3.33
420 421 2.692557 GCACCCAAATATGCATACCACA 59.307 45.455 8.99 0.00 41.65 4.17
421 422 2.035832 GGCACCCAAATATGCATACCAC 59.964 50.000 8.99 0.00 43.93 4.16
422 423 2.315176 GGCACCCAAATATGCATACCA 58.685 47.619 8.99 0.00 43.93 3.25
423 424 1.269448 CGGCACCCAAATATGCATACC 59.731 52.381 8.99 2.10 43.93 2.73
424 425 1.953686 ACGGCACCCAAATATGCATAC 59.046 47.619 8.99 0.00 43.93 2.39
425 426 2.356665 ACGGCACCCAAATATGCATA 57.643 45.000 9.27 9.27 43.93 3.14
426 427 2.356665 TACGGCACCCAAATATGCAT 57.643 45.000 3.79 3.79 43.93 3.96
427 428 2.130272 TTACGGCACCCAAATATGCA 57.870 45.000 0.00 0.00 43.93 3.96
428 429 3.512033 TTTTACGGCACCCAAATATGC 57.488 42.857 0.00 0.00 41.29 3.14
838 841 5.061920 AGAATGTTCTAGAGGTTCGACAC 57.938 43.478 0.00 0.00 35.34 3.67
867 870 3.319198 GGGCAGTCCTTCGACCCA 61.319 66.667 0.30 0.00 40.12 4.51
868 871 3.319198 TGGGCAGTCCTTCGACCC 61.319 66.667 0.00 0.00 40.12 4.46
1014 1023 0.730494 GACTGCGTTGGATTGCTTGC 60.730 55.000 0.00 0.00 0.00 4.01
1432 1453 1.519455 CTCCATGTCGGCGTTCTCC 60.519 63.158 6.85 0.00 33.14 3.71
1651 5004 7.295196 TCTCCCTCAGATAACCATACTACTAGT 59.705 40.741 0.00 0.00 0.00 2.57
1673 5026 1.546476 CAGACAGTACACACCCTCTCC 59.454 57.143 0.00 0.00 0.00 3.71
1776 5140 4.965042 AAAACGCGCTTCAAAATTAAGG 57.035 36.364 5.73 0.00 0.00 2.69
1799 5165 4.801164 AGACGGGCCTCTAATCTAACTTA 58.199 43.478 0.84 0.00 0.00 2.24
1801 5167 3.315880 AGACGGGCCTCTAATCTAACT 57.684 47.619 0.84 0.00 0.00 2.24
1802 5168 3.637694 AGAAGACGGGCCTCTAATCTAAC 59.362 47.826 0.84 0.00 0.00 2.34
1803 5169 3.912248 AGAAGACGGGCCTCTAATCTAA 58.088 45.455 0.84 0.00 0.00 2.10
1804 5170 3.596940 AGAAGACGGGCCTCTAATCTA 57.403 47.619 0.84 0.00 0.00 1.98
1805 5171 2.463047 AGAAGACGGGCCTCTAATCT 57.537 50.000 0.84 2.04 0.00 2.40
1806 5172 3.488363 TCTAGAAGACGGGCCTCTAATC 58.512 50.000 0.84 0.00 0.00 1.75
1807 5173 3.596940 TCTAGAAGACGGGCCTCTAAT 57.403 47.619 0.84 0.00 0.00 1.73
1820 5186 8.530269 AATGCAGCTTTCAAAATTTCTAGAAG 57.470 30.769 5.12 0.00 0.00 2.85
1823 5189 8.080083 ACAAATGCAGCTTTCAAAATTTCTAG 57.920 30.769 0.00 0.00 0.00 2.43
1825 5191 6.930667 ACAAATGCAGCTTTCAAAATTTCT 57.069 29.167 0.00 0.00 0.00 2.52
1838 5206 0.323360 TCCCCAGGTACAAATGCAGC 60.323 55.000 0.00 0.00 0.00 5.25
1853 5221 2.165357 ATTCTGGCTCCAATTTCCCC 57.835 50.000 0.00 0.00 0.00 4.81
1875 5246 9.323985 TCTGTTCAATTTTTCACCTAAATTTGG 57.676 29.630 0.00 0.00 34.01 3.28
1891 5262 8.061304 ACCCAGGATTTGTATATCTGTTCAATT 58.939 33.333 0.00 0.00 0.00 2.32
1892 5263 7.503566 CACCCAGGATTTGTATATCTGTTCAAT 59.496 37.037 0.00 0.00 0.00 2.57
1895 5266 6.357367 ACACCCAGGATTTGTATATCTGTTC 58.643 40.000 0.00 0.00 0.00 3.18
1901 5273 7.619302 ACATCAAAACACCCAGGATTTGTATAT 59.381 33.333 11.33 0.00 35.01 0.86
1904 5276 5.144100 ACATCAAAACACCCAGGATTTGTA 58.856 37.500 11.33 3.62 35.01 2.41
1912 5284 1.270550 GCCAGACATCAAAACACCCAG 59.729 52.381 0.00 0.00 0.00 4.45
1914 5286 1.620822 AGCCAGACATCAAAACACCC 58.379 50.000 0.00 0.00 0.00 4.61
1935 5307 5.934625 CCTTAATATGATTCGTCCTTCCCAG 59.065 44.000 0.00 0.00 0.00 4.45
1938 5310 7.041303 GGAAACCTTAATATGATTCGTCCTTCC 60.041 40.741 0.00 0.00 0.00 3.46
1945 5317 6.073003 GCAGGAGGAAACCTTAATATGATTCG 60.073 42.308 0.00 0.00 38.32 3.34
1976 5348 4.207165 GAGTTTTCCTAGCATAATGGGCA 58.793 43.478 0.00 0.00 0.00 5.36
1977 5349 4.036852 GTGAGTTTTCCTAGCATAATGGGC 59.963 45.833 0.00 0.00 0.00 5.36
1978 5350 4.580580 GGTGAGTTTTCCTAGCATAATGGG 59.419 45.833 0.00 0.00 0.00 4.00
2008 5382 7.189693 TCTCATATGTGTAATCGAATTTGGC 57.810 36.000 1.90 0.00 0.00 4.52
2031 5405 5.121142 TCAAAAATTTCCTGGTACGTCGATC 59.879 40.000 0.00 0.00 0.00 3.69
2037 5411 8.621286 AGCTTATATCAAAAATTTCCTGGTACG 58.379 33.333 0.00 0.00 0.00 3.67
2075 5503 5.010314 TGAAAATCACTTCAAGATGCAGCTT 59.990 36.000 12.34 12.34 32.39 3.74
2076 5504 4.521639 TGAAAATCACTTCAAGATGCAGCT 59.478 37.500 0.00 0.00 32.39 4.24
2113 5541 4.083110 GCAGCTCTATTTTGCTCTTTGTCA 60.083 41.667 0.00 0.00 37.44 3.58
2118 5582 3.015327 CAGGCAGCTCTATTTTGCTCTT 58.985 45.455 0.00 0.00 37.44 2.85
2130 5594 2.101770 GCGCAAATCAGGCAGCTC 59.898 61.111 0.30 0.00 0.00 4.09
2297 5793 5.710099 ACCATCTTATTTTGTGTACCCAGTG 59.290 40.000 0.00 0.00 0.00 3.66
2361 5857 2.512974 GTATGGCGGTCGGTTGGG 60.513 66.667 0.00 0.00 0.00 4.12
2363 5859 0.179084 AGATGTATGGCGGTCGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
2364 5860 0.104304 GAGATGTATGGCGGTCGGTT 59.896 55.000 0.00 0.00 0.00 4.44
2366 5862 1.006102 GGAGATGTATGGCGGTCGG 60.006 63.158 0.00 0.00 0.00 4.79
2370 5866 2.549064 TCATTGGAGATGTATGGCGG 57.451 50.000 0.00 0.00 0.00 6.13
2386 5882 6.373779 GTCATGTTCGTGTCTTCATTTTCAT 58.626 36.000 0.00 0.00 0.00 2.57
2387 5883 5.558083 CGTCATGTTCGTGTCTTCATTTTCA 60.558 40.000 0.00 0.00 0.00 2.69
2398 5894 0.531974 ACCTTGCGTCATGTTCGTGT 60.532 50.000 12.58 5.14 0.00 4.49
2399 5895 0.586319 AACCTTGCGTCATGTTCGTG 59.414 50.000 12.58 5.82 0.00 4.35
2410 5906 4.808895 TGCAGATACTATGTAAACCTTGCG 59.191 41.667 0.00 0.00 0.00 4.85
2615 6112 5.413309 AGATGCAACTACTAACTCTTGCT 57.587 39.130 0.00 0.00 39.81 3.91
2637 6136 9.707957 ACATATGGACCATCAATTAGGTTTTAA 57.292 29.630 11.17 0.00 38.50 1.52
2670 6175 2.723658 GAGAGAATCAAGCTGTATCGCG 59.276 50.000 0.00 0.00 37.82 5.87
2695 6200 2.203209 CCCCTAATGCCACGAGCC 60.203 66.667 0.00 0.00 42.71 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.